Citrus Sinensis ID: 044320

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENISSMLPESDTIPTESDISASGEILEYFLCITTN
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccccccccccccccccccEEEcEEcccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccHHHEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccEEEccccccEEccccHcEccccccEccccccccccHHHHHcccccccccHEHHHEEEEEcccccHHHHHHHHHHHHHHHcccHcccccHHHHHHHHHHHcccccccccccccccccccccccccEcccccc
Coil and Loop (DISEMBL)
MTSRFRRSVSLAMRLHIALGLAEGILYlhteadppiihwdikatntlldskftpkvfdfeisrlapvpningvVGHVSIVVKgthtqqlteksdiyGLGIACLYMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENissmlpesdtiptesdisasGEILEYFLCITTN
Flexible Loop (DISEMBL)
MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGthtqqlteksdiYGLGIACLYMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENISsmlpesdtiptesdisasgEILEYFLCITTN
Low Complexity Region (SEG)
MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENISSMLPESDTIPTESDISASGEILEYFLCITTN
Disordered region (IsUnstruct)
********VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYMGLYSFEYLKRFMSLALKYCED*************************************GEILEYFLCIT**
Disordered Region (DISOPRED)
*****RR**SLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENI*************************FLCI***
Disordered Region (DISEMBL)
********VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENISSMLPESDTIPTESDISASGEILEYFLCITTN
Disordered Region (DISPRO)
*****RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENISS******************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENISSMLPESDTIPTESDISASGEILEYFLCITTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
C0LGU1	959	Probable LRR receptor-lik	no	no	0.863	0.158	0.446	6e-37
C0LGD7	953	Probable LRR receptor-lik	no	no	0.909	0.167	0.443	2e-36
Q9LFG1	937	Putative leucine-rich rep	no	no	0.823	0.154	0.386	3e-26
Q9LT96	946	Probable leucine-rich rep	no	no	0.823	0.153	0.343	2e-19
Q3E8W4	858	Receptor-like protein kin	no	no	0.517	0.106	0.471	4e-17
Q9SR05	850	Receptor-like protein kin	no	no	0.471	0.097	0.489	2e-16
Q8VZJ9	411	Calmodulin-binding recept	no	no	0.522	0.223	0.446	7e-16
Q9FID9	880	Probable receptor-like pr	no	no	0.545	0.109	0.456	9e-16
Q9FID8	873	Putative receptor-like pr	no	no	0.545	0.109	0.456	1e-15
Q9SFT7	414	Serine/threonine-protein	no	no	0.5	0.212	0.445	1e-15

>sp|C0LGU1|Y5374_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1

 Score =  153 bits (386), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 87/195 (44%), Positives = 112/195 (57%), Gaps = 43/195 (22%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           +++RFR+ +SLA+RL IALG A GILYLHTEADPPIIH DIK +N LLDSK  PKV DF 
Sbjct: 716 LSARFRQPLSLALRLRIALGSARGILYLHTEADPPIIHRDIKPSNILLDSKMNPKVADFG 775

Query: 61  ISRLAPVPNINGVVGHVSIVVKGTH---------TQQLTEKSDIYGLGIACL-------- 103
           IS+L  +        HV+ +VKGT          + +LTEKSD+Y LGI  L        
Sbjct: 776 ISKLIALDGGGVQRDHVTTIVKGTPGYVDPEYYLSHRLTEKSDVYSLGIVFLEILTGMRP 835

Query: 104 --------------------------YMGLYSFEYLKRFMSLALKYCEDETKARPSMLEV 137
                                      MG YS E +KRFM LA++ C+D  +ARP MLE+
Sbjct: 836 ISHGRNIVREVNEACDAGMMMSVIDRSMGQYSEECVKRFMELAIRCCQDNPEARPWMLEI 895

Query: 138 ARQLENISSMLPESD 152
            R+LENI  ++P+ +
Sbjct: 896 VRELENIYGLIPKEE 910

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGD7|Y1684_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/205 (44%), Positives = 119/205 (58%), Gaps = 45/205 (21%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           ++ + +  +  AMRL IALG A+GILYLHTEA+PPI H DIKA+N LLDS+FT KV DF 
Sbjct: 710 ISVKLKEPLDFAMRLRIALGSAKGILYLHTEANPPIFHRDIKASNILLDSRFTAKVADFG 769

Query: 61  ISRLAPVPNINGVV-GHVSIVVKGTH---------TQQLTEKSDIYGLGIAC--LYMGLY 108
           +SRLAPVP++ G+   HVS VVKGT          T QLT+KSD+Y LG+    L+ G+ 
Sbjct: 770 LSRLAPVPDMEGISPQHVSTVVKGTPGYLDPEYFLTHQLTDKSDVYSLGVVLLELFTGMQ 829

Query: 109 SF--------------------------------EYLKRFMSLALKYCEDETKARPSMLE 136
                                             E L++F +LAL+ C +ET ARPSM E
Sbjct: 830 PITHGKNIVREINIAYESGSILSTVDKRMSSVPDECLEKFATLALRCCREETDARPSMAE 889

Query: 137 VARQLENISSMLPESDTIPTESDIS 161
           V R+LE I  ++PES    T +D+S
Sbjct: 890 VVRELEIIWELMPESHVAKT-ADLS 913

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFG1|Y3359_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At3g53590 OS=Arabidopsis thaliana GN=At3g53590 PE=3 SV=2

 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 97/189 (51%), Gaps = 44/189 (23%)

Query: 8   SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV 67
           ++S +MR H+ALG A+GILYLHTEA+PP+IH DIK +N LLD +   KV DF +SRLAP 
Sbjct: 706 TLSFSMRSHVALGSAKGILYLHTEANPPVIHRDIKTSNILLDCQLHAKVADFGLSRLAPA 765

Query: 68  -PNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACL-------------- 103
               +G   HVS VV+GT          TQQLT +SD+Y  G+  L              
Sbjct: 766 FGEGDGEPAHVSTVVRGTPGYLDPEYFMTQQLTVRSDVYSFGVVLLELLTGMHPFFEGTH 825

Query: 104 --------------------YMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLEN 143
                                MG  S + +K+   LAL  CED  + RP M +V ++LE 
Sbjct: 826 IIREVRTANECGTVLSVADSRMGQCSPDKVKKLAELALWCCEDRPETRPPMSKVVKELEG 885

Query: 144 ISSMLPESD 152
           I   + E +
Sbjct: 886 ICQSVREPE 894

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LT96|Y5977_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 96/204 (47%), Gaps = 59/204 (28%)

Query: 14  RLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV 73
           RL IALG  +G+ YLH  ADPPIIH D+K+ N LLD   T KV DF +S+L   P     
Sbjct: 732 RLKIALGSGKGLAYLHELADPPIIHRDVKSNNILLDEHLTAKVADFGLSKLVGDPE---- 787

Query: 74  VGHVSIVVKGT---------HTQQLTEKSDIYGLGIACLYM------------------- 105
             HV+  VKGT          T QLTEKSD+YG G+  L +                   
Sbjct: 788 KAHVTTQVKGTMGYLDPEYYMTNQLTEKSDVYGFGVVMLELLTGKSPIDRGSYVVKEVKK 847

Query: 106 ------GLYSFEYL---------------KRFMSLALKYCEDETKARPSMLEVARQLENI 144
                  LY  + L               ++++ +AL+  E E   RP+M EV ++LE+I
Sbjct: 848 KMDKSRNLYDLQELLDTTIIQNSGNLKGFEKYVDVALQCVEPEGVNRPTMSEVVQELESI 907

Query: 145 SSML---PESDTIPTESDISASGE 165
             ++   P +D+   E    ASG+
Sbjct: 908 LRLVGLNPNADSATYE---EASGD 928

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q3E8W4|ANX2_ARATH Receptor-like protein kinase ANXUR2 OS=Arabidopsis thaliana GN=ANX2 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 62/104 (59%), Gaps = 13/104 (12%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           R  ++   RL IA+G A G+ YLHT A   IIH D+K TN LLD  +  KV DF +S+  
Sbjct: 611 RPQLTWKRRLEIAIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTG 670

Query: 66  PVPNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGI 100
             PN+NG  GHV+ VVKG+           QQLTEKSD+Y  G+
Sbjct: 671 --PNMNG--GHVTTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGV 710

Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SR05|ANX1_ARATH Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana GN=ANX1 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 59/96 (61%), Gaps = 13/96 (13%)

Query: 14  RLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV 73
           RL IA+G A G+ YLHT A   IIH D+K TN L+D  +  KV DF +S+    PN+NG 
Sbjct: 615 RLEIAIGAARGLHYLHTGAKYTIIHRDVKTTNILVDENWVAKVSDFGLSKTG--PNMNG- 671

Query: 74  VGHVSIVVKGT---------HTQQLTEKSDIYGLGI 100
            GHV+ VVKG+           QQLTEKSD+Y  G+
Sbjct: 672 -GHVTTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGV 706

Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZJ9|CRCK2_ARATH Calmodulin-binding receptor-like cytoplasmic kinase 2 OS=Arabidopsis thaliana GN=CRCK2 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 59/103 (57%), Gaps = 11/103 (10%)

Query: 7   RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP 66
           +++ +A RL IA  +A  I YLH    PPIIH DIK++N LL   +  KV DF  +RLA 
Sbjct: 214 KTLDMATRLDIATDVAHAITYLHMYTQPPIIHRDIKSSNILLTENYRAKVADFGFARLA- 272

Query: 67  VPNINGVVGHVSIVVKGTH---------TQQLTEKSDIYGLGI 100
            P+ +    HVS  VKGT          T QLTEKSD+Y  G+
Sbjct: 273 -PDTDSGATHVSTQVKGTAGYLDPEYLTTYQLTEKSDVYSFGV 314

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FID9|Y5389_ARATH Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 60/114 (52%), Gaps = 18/114 (15%)

Query: 5   FRRS------VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFD 58
           FRR       +S   RL I +G A G+ YLHT A   IIH DIK TN LLD  F  KV D
Sbjct: 612 FRRDKASDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVAKVSD 671

Query: 59  FEISRLAPVPNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACL 103
           F +SR+ P    +    HVS VVKGT           Q LTEKSD+Y  G+  L
Sbjct: 672 FGLSRVGPT---SASQTHVSTVVKGTFGYLDPEYYRRQILTEKSDVYSFGVVLL 722

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9FID8|Y5900_ARATH Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 60/114 (52%), Gaps = 18/114 (15%)

Query: 5   FRRS------VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFD 58
           FRR       +S   RL I +G A G+ YLHT A   IIH DIK TN LLD  F  KV D
Sbjct: 605 FRRDKTSDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVTKVSD 664

Query: 59  FEISRLAPVPNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACL 103
           F +SR+ P    +    HVS VVKGT           Q LTEKSD+Y  G+  L
Sbjct: 665 FGLSRVGPT---SASQTHVSTVVKGTFGYLDPEYYRRQVLTEKSDVYSFGVVLL 715

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9SFT7|Y3707_ARATH Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 13/101 (12%)

Query: 14  RLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV 73
           R+ IALG A G+ YLH +A+PP+I+ D+KA N LLD +F  K+ DF +++L PV    G 
Sbjct: 180 RIRIALGAAMGLEYLHDKANPPVIYRDLKAANILLDGEFNAKLSDFGLAKLGPV----GD 235

Query: 74  VGHVSIVVKGTH---------TQQLTEKSDIYGLGIACLYM 105
             HVS  V GT+         T QLT KSD+Y  G+  L +
Sbjct: 236 KQHVSSRVMGTYGYCAPEYQRTGQLTTKSDVYSFGVVLLEL 276

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
356537716	954	PREDICTED: probable LRR receptor-like se	0.909	0.167	0.480	5e-41
356569432	953	PREDICTED: probable LRR receptor-like se	0.909	0.167	0.470	4e-40
413945756	245	putative leucine-rich repeat receptor-li	0.937	0.673	0.464	6e-40
413945754	835	putative leucine-rich repeat receptor-li	0.943	0.198	0.452	2e-39
242088275	943	hypothetical protein SORBIDRAFT_09g02362	0.943	0.176	0.447	2e-39
147789396	782	hypothetical protein VITISV_043541 [Viti	0.937	0.210	0.459	2e-39
225434309	959	PREDICTED: probable LRR receptor-like se	0.937	0.172	0.459	2e-39
297745743	960	unnamed protein product [Vitis vinifera]	0.937	0.171	0.459	2e-39
413945753	948	putative leucine-rich repeat receptor-li	0.943	0.175	0.441	6e-39
413945755	724	putative leucine-rich repeat receptor-li	0.943	0.229	0.441	7e-39

>gi|356537716|ref|XP_003537371.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like [Glycine max]

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 98/204 (48%), Positives = 125/204 (61%), Gaps = 44/204 (21%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           +  ++ AMRL IALG A+G++YLHTEADPPI H D+KA+N LLDSKF+ KV DF +SRLA
Sbjct: 709 KDPLTFAMRLKIALGAAKGLMYLHTEADPPIFHRDVKASNILLDSKFSAKVADFGLSRLA 768

Query: 66  PVPNINGVV-GHVSIVVKGTH---------TQQLTEKSDIYGLGIACL------------ 103
           PVP++ GVV GHVS VVKGT          T +LT+KSD+Y LG+  L            
Sbjct: 769 PVPDMEGVVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHG 828

Query: 104 ----------------------YMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQL 141
                                  MG Y  E++++F++LA+K CEDE +ARPSM EV R+L
Sbjct: 829 KNIVREVNVAYQSGVIFSIIDGRMGSYPSEHVEKFLTLAMKCCEDEPEARPSMTEVVREL 888

Query: 142 ENISSMLPESDTIPTESDISASGE 165
           ENI S +PESDT   E   S SG+
Sbjct: 889 ENIWSTMPESDTKRAEFISSDSGK 912

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569432|ref|XP_003552905.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like [Glycine max]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/204 (47%), Positives = 125/204 (61%), Gaps = 44/204 (21%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           +  ++ AMRL +ALG A+G+LYLH+EADPPI H D+KA+N LLDSKF+ KV DF +SRLA
Sbjct: 708 KDPLTFAMRLKMALGAAKGLLYLHSEADPPIFHRDVKASNILLDSKFSAKVADFGLSRLA 767

Query: 66  PVPNINGVV-GHVSIVVKGTH---------TQQLTEKSDIYGLGIACL------------ 103
           PVP++ GVV GHVS VVKGT          T++LT+KSD+Y LG+  L            
Sbjct: 768 PVPDMEGVVPGHVSTVVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVFLELLTGMHPISHG 827

Query: 104 ----------------------YMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQL 141
                                  MG Y  E++++F++LA+K CEDE +ARP M EV R+L
Sbjct: 828 KNIVREVNVAYQSGVIFSIIDGRMGSYPSEHVEKFLTLAMKCCEDEPEARPRMAEVVREL 887

Query: 142 ENISSMLPESDTIPTESDISASGE 165
           ENI S +PESDT   E   S SG+
Sbjct: 888 ENIWSTMPESDTKRAEFMSSDSGK 911

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413945756|gb|AFW78405.1| putative leucine-rich repeat receptor-like protein kinase family protein, partial [Zea mays]

 Score =  169 bits (427), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 97/209 (46%), Positives = 123/209 (58%), Gaps = 44/209 (21%)

Query: 2   TSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEI 61
           T++ +R +S  +RL IALG A+GILYLHTEADPPI H D+KA+N LLDSKF  KV DF +
Sbjct: 1   TAKSKRPLSFGLRLKIALGAAKGILYLHTEADPPIFHRDVKASNILLDSKFVAKVADFGL 60

Query: 62  SRLAPVPNINGVV-GHVSIVVKGTH---------TQQLTEKSDIYGLGI----------- 100
           SRLAPVP++ G +  HVS VVKGT          T +LT+KSD+Y LG+           
Sbjct: 61  SRLAPVPDVEGTLPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLEMLTGMKP 120

Query: 101 -------------ACL----------YMGLYSFEYLKRFMSLALKYCEDETKARPSMLEV 137
                        AC            MGLY  E +KRF+SLA K C+DET  RPSM E+
Sbjct: 121 IEHGKNIVREVNSACQSGAVSGIIDGRMGLYPPECIKRFLSLATKCCQDETDDRPSMWEI 180

Query: 138 ARQLENISSMLPESDTIPTESDISASGEI 166
            R+LE I  M+PE D I  E+  + S ++
Sbjct: 181 VRELELILRMMPEEDLILLETSETDSTDV 209

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413945754|gb|AFW78403.1| putative leucine-rich repeat receptor-like protein kinase family protein [Zea mays]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/210 (45%), Positives = 123/210 (58%), Gaps = 44/210 (20%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           ++++ +R +S  +RL IALG A+GILYLHTEADPPI H D+KA+N LLDSKF  KV DF 
Sbjct: 590 LSAKSKRPLSFGLRLKIALGAAKGILYLHTEADPPIFHRDVKASNILLDSKFVAKVADFG 649

Query: 61  ISRLAPVPNINGVV-GHVSIVVKGTH---------TQQLTEKSDIYGLGIACL------- 103
           +SRLAPVP++ G +  HVS VVKGT          T +LT+KSD+Y LG+  L       
Sbjct: 650 LSRLAPVPDVEGTLPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLEMLTGMK 709

Query: 104 ---------------------------YMGLYSFEYLKRFMSLALKYCEDETKARPSMLE 136
                                       MGLY  E +KRF+SLA K C+DET  RPSM E
Sbjct: 710 PIEHGKNIVREVNSACQSGAVSGIIDGRMGLYPPECIKRFLSLATKCCQDETDDRPSMWE 769

Query: 137 VARQLENISSMLPESDTIPTESDISASGEI 166
           + R+LE I  M+PE D I  E+  + S ++
Sbjct: 770 IVRELELILRMMPEEDLILLETSETDSTDV 799

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242088275|ref|XP_002439970.1| hypothetical protein SORBIDRAFT_09g023620 [Sorghum bicolor] gi|241945255|gb|EES18400.1| hypothetical protein SORBIDRAFT_09g023620 [Sorghum bicolor]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/210 (44%), Positives = 123/210 (58%), Gaps = 44/210 (20%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           ++++ +R +S  +RL IALG A+GILYLHTEADPPI H D+KA+N LLDSKF  KV DF 
Sbjct: 698 LSAKSKRPLSFGLRLKIALGAAKGILYLHTEADPPIFHRDVKASNILLDSKFVAKVADFG 757

Query: 61  ISRLAPVPNINGVV-GHVSIVVKGTH---------TQQLTEKSDIYGLGIACL------- 103
           +SRLAPVP++ G +  HVS VVKGT          T +LT+KSD+Y LG+  L       
Sbjct: 758 LSRLAPVPDVEGTLPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLEMLTGMK 817

Query: 104 ---------------------------YMGLYSFEYLKRFMSLALKYCEDETKARPSMLE 136
                                       MGLY  E ++RF+SLA K C+DET  RPSM E
Sbjct: 818 PIEHGKNIVREVNSACQSGSVSEIIDGRMGLYPPECIRRFLSLATKCCQDETDDRPSMWE 877

Query: 137 VARQLENISSMLPESDTIPTESDISASGEI 166
           + R+LE I  M+PE D I  E+  + S ++
Sbjct: 878 IVRELELILRMMPEEDVILLETSETDSTDV 907

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789396|emb|CAN75549.1| hypothetical protein VITISV_043541 [Vitis vinifera]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/209 (45%), Positives = 125/209 (59%), Gaps = 44/209 (21%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
           ++ +  +S AMRL IALG ++GILYLHTEA+PPI H D+KA+N LLDSKF  KV DF +S
Sbjct: 540 AKSKEPLSFAMRLSIALGSSKGILYLHTEANPPIFHRDVKASNILLDSKFIAKVADFGLS 599

Query: 63  RLAPVPNINGVV-GHVSIVVKGTH---------TQQLTEKSDIYGLGIACL--------- 103
           RLAPVP+I G    HVS VVKGT          T +LT+KSD+Y LG+  L         
Sbjct: 600 RLAPVPDIEGSTPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPI 659

Query: 104 -------------------------YMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVA 138
                                     MG Y  E +++F+ LALK C+++T ARPSM +V 
Sbjct: 660 SHGKNIVREVNVSYQSGMIFSVIDNRMGSYPSECVEKFVKLALKCCQEDTDARPSMAQVV 719

Query: 139 RQLENISSMLPESDTIPTESDISASGEIL 167
           R+LENI  M+PESDT  TES I+  G+++
Sbjct: 720 RELENIWLMMPESDTKTTESLITEPGKLI 748

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434309|ref|XP_002276020.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like [Vitis vinifera]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/209 (45%), Positives = 125/209 (59%), Gaps = 44/209 (21%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
           ++ +  +S AMRL IALG ++GILYLHTEA+PPI H D+KA+N LLDSKF  KV DF +S
Sbjct: 717 AKSKEPLSFAMRLSIALGSSKGILYLHTEANPPIFHRDVKASNILLDSKFIAKVADFGLS 776

Query: 63  RLAPVPNINGVV-GHVSIVVKGTH---------TQQLTEKSDIYGLGIACL--------- 103
           RLAPVP+I G    HVS VVKGT          T +LT+KSD+Y LG+  L         
Sbjct: 777 RLAPVPDIEGSTPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPI 836

Query: 104 -------------------------YMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVA 138
                                     MG Y  E +++F+ LALK C+++T ARPSM +V 
Sbjct: 837 SHGKNIVREVNVSYQSGMIFSVIDNRMGSYPSECVEKFVKLALKCCQEDTDARPSMAQVV 896

Query: 139 RQLENISSMLPESDTIPTESDISASGEIL 167
           R+LENI  M+PESDT  TES I+  G+++
Sbjct: 897 RELENIWLMMPESDTKTTESLITEPGKLI 925

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745743|emb|CBI15799.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/209 (45%), Positives = 125/209 (59%), Gaps = 44/209 (21%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
           ++ +  +S AMRL IALG ++GILYLHTEA+PPI H D+KA+N LLDSKF  KV DF +S
Sbjct: 718 AKSKEPLSFAMRLSIALGSSKGILYLHTEANPPIFHRDVKASNILLDSKFIAKVADFGLS 777

Query: 63  RLAPVPNINGVV-GHVSIVVKGTH---------TQQLTEKSDIYGLGIACL--------- 103
           RLAPVP+I G    HVS VVKGT          T +LT+KSD+Y LG+  L         
Sbjct: 778 RLAPVPDIEGSTPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPI 837

Query: 104 -------------------------YMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVA 138
                                     MG Y  E +++F+ LALK C+++T ARPSM +V 
Sbjct: 838 SHGKNIVREVNVSYQSGMIFSVIDNRMGSYPSECVEKFVKLALKCCQEDTDARPSMAQVV 897

Query: 139 RQLENISSMLPESDTIPTESDISASGEIL 167
           R+LENI  M+PESDT  TES I+  G+++
Sbjct: 898 RELENIWLMMPESDTKTTESLITEPGKLI 926

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413945753|gb|AFW78402.1| putative leucine-rich repeat receptor-like protein kinase family protein [Zea mays]

 Score =  165 bits (418), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 95/215 (44%), Positives = 123/215 (57%), Gaps = 49/215 (22%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           ++++ +R +S  +RL IALG A+GILYLHTEADPPI H D+KA+N LLDSKF  KV DF 
Sbjct: 698 LSAKSKRPLSFGLRLKIALGAAKGILYLHTEADPPIFHRDVKASNILLDSKFVAKVADFG 757

Query: 61  ISRLAPVPNINGVV-GHVSIVVKGTH---------TQQLTEKSDIYGLGIACL------- 103
           +SRLAPVP++ G +  HVS VVKGT          T +LT+KSD+Y LG+  L       
Sbjct: 758 LSRLAPVPDVEGTLPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLEMLTGMK 817

Query: 104 --------------------------------YMGLYSFEYLKRFMSLALKYCEDETKAR 131
                                            MGLY  E +KRF+SLA K C+DET  R
Sbjct: 818 PIEHGKNIVREVCTSSVNSACQSGAVSGIIDGRMGLYPPECIKRFLSLATKCCQDETDDR 877

Query: 132 PSMLEVARQLENISSMLPESDTIPTESDISASGEI 166
           PSM E+ R+LE I  M+PE D I  E+  + S ++
Sbjct: 878 PSMWEIVRELELILRMMPEEDLILLETSETDSTDV 912

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413945755|gb|AFW78404.1| putative leucine-rich repeat receptor-like protein kinase family protein [Zea mays]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 95/215 (44%), Positives = 123/215 (57%), Gaps = 49/215 (22%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           ++++ +R +S  +RL IALG A+GILYLHTEADPPI H D+KA+N LLDSKF  KV DF 
Sbjct: 474 LSAKSKRPLSFGLRLKIALGAAKGILYLHTEADPPIFHRDVKASNILLDSKFVAKVADFG 533

Query: 61  ISRLAPVPNINGVV-GHVSIVVKGTH---------TQQLTEKSDIYGLGIACL------- 103
           +SRLAPVP++ G +  HVS VVKGT          T +LT+KSD+Y LG+  L       
Sbjct: 534 LSRLAPVPDVEGTLPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLEMLTGMK 593

Query: 104 --------------------------------YMGLYSFEYLKRFMSLALKYCEDETKAR 131
                                            MGLY  E +KRF+SLA K C+DET  R
Sbjct: 594 PIEHGKNIVREVCTSSVNSACQSGAVSGIIDGRMGLYPPECIKRFLSLATKCCQDETDDR 653

Query: 132 PSMLEVARQLENISSMLPESDTIPTESDISASGEI 166
           PSM E+ R+LE I  M+PE D I  E+  + S ++
Sbjct: 654 PSMWEIVRELELILRMMPEEDLILLETSETDSTDV 688

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2181017	951	AT5G01950 [Arabidopsis thalian	0.664	0.123	0.449	2.3e-21
TAIR|locus:2084016	937	AT3G53590 [Arabidopsis thalian	0.585	0.109	0.495	5.4e-20
TAIR|locus:2085720	386	AT3G20530 [Arabidopsis thalian	0.5	0.227	0.435	3.4e-18
UNIPROTKB|Q9ARH1	647	Q9ARH1 "Receptor protein kinas	0.528	0.143	0.420	1.6e-17
TAIR|locus:2148830	858	ANX2 "ANXUR2" [Arabidopsis tha	0.517	0.106	0.471	2e-17
TAIR|locus:2084953	850	ANX1 "ANXUR1" [Arabidopsis tha	0.471	0.097	0.489	2.5e-17
TAIR|locus:2087263	363	AT3G24790 [Arabidopsis thalian	0.488	0.236	0.454	3.9e-17
TAIR|locus:2019863	971	AT1G79620 [Arabidopsis thalian	0.812	0.147	0.365	5.7e-17
TAIR|locus:2098580	414	AT3G07070 [Arabidopsis thalian	0.488	0.207	0.454	7.1e-17
TAIR|locus:2177202	873	AT5G39000 [Arabidopsis thalian	0.522	0.105	0.471	9.4e-17

TAIR|locus:2181017 AT5G01950 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 2.3e-21, P = 2.3e-21
 Identities = 58/129 (44%), Positives = 84/129 (65%)

Query:     1 MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
             ++++ + S+S  MR+ +ALG A+GILYLHTEA+PP+ H DIKA+N LLD  F  KV DF 
Sbjct:   711 LSAKGKESLSFGMRIRVALGAAKGILYLHTEANPPVFHRDIKASNILLDPNFNAKVADFG 770

Query:    61 ISRLAPV-PNINGVVGHVSIVVKGTH---------TQQLTEKSDIYGLGIACLYM--GLY 108
             +SRLAPV  +   V  HVS VV+GT          T +LT+KSD+Y +G+  L +  G++
Sbjct:   771 LSRLAPVLEDEEDVPKHVSTVVRGTPGYLDPEYFLTHKLTDKSDVYSIGVVFLELLTGMH 830

Query:   109 SFEYLKRFM 117
             +  + K  +
Sbjct:   831 AISHGKNIV 839

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2084016 AT3G53590 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 5.4e-20, P = 5.4e-20
 Identities = 57/115 (49%), Positives = 75/115 (65%)

Query:     8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV 67
             ++S +MR H+ALG A+GILYLHTEA+PP+IH DIK +N LLD +   KV DF +SRLAP 
Sbjct:   706 TLSFSMRSHVALGSAKGILYLHTEANPPVIHRDIKTSNILLDCQLHAKVADFGLSRLAPA 765

Query:    68 -PNINGVVGHVSIVVKGTH---------TQQLTEKSDIYGLGIACLYM--GLYSF 110
                 +G   HVS VV+GT          TQQLT +SD+Y  G+  L +  G++ F
Sbjct:   766 FGEGDGEPAHVSTVVRGTPGYLDPEYFMTQQLTVRSDVYSFGVVLLELLTGMHPF 820

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2085720 AT3G20530 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
 Identities = 44/101 (43%), Positives = 59/101 (58%)

Query:    14 RLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV 73
             R+ +A G A G+ YLH  ADPP+I+ D KA+N LLD +F PK+ DF ++++ P     G 
Sbjct:   184 RMKVAAGAARGLEYLHETADPPVIYRDFKASNILLDEEFNPKLSDFGLAKVGPT----GG 239

Query:    74 VGHVSIVVKGTH---------TQQLTEKSDIYGLGIACLYM 105
               HVS  V GT+         T QLT KSD+Y  G+  L M
Sbjct:   240 ETHVSTRVMGTYGYCAPEYALTGQLTVKSDVYSFGVVFLEM 280

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|Q9ARH1 Q9ARH1 "Receptor protein kinase PERK1" [Brassica napus (taxid:3708)]

 Score = 180 (68.4 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
 Identities = 45/107 (42%), Positives = 63/107 (58%)

Query:     6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
             R ++  + RL IALG A+G+ YLH + +P IIH DIKA+N L+D KF  KV DF ++++A
Sbjct:   365 RPTMEWSTRLKIALGSAKGLSYLHEDCNPKIIHRDIKASNILIDFKFEAKVADFGLAKIA 424

Query:    66 PVPNINGVVGHVSIVVKGTH---------TQQLTEKSDIYGLGIACL 103
                N      HVS  V GT          + +LTEKSD++  G+  L
Sbjct:   425 SDTNT-----HVSTRVMGTFGYLAPEYAASGKLTEKSDVFSFGVVLL 466

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

TAIR|locus:2148830 ANX2 "ANXUR2" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
 Identities = 49/104 (47%), Positives = 62/104 (59%)

Query:     6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
             R  ++   RL IA+G A G+ YLHT A   IIH D+K TN LLD  +  KV DF +S+  
Sbjct:   611 RPQLTWKRRLEIAIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTG 670

Query:    66 PVPNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGI 100
             P  N+NG  GHV+ VVKG+           QQLTEKSD+Y  G+
Sbjct:   671 P--NMNG--GHVTTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGV 710

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009860 "pollen tube growth" evidence=IGI

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0090404 "pollen tube tip" evidence=IDA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2084953 ANX1 "ANXUR1" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
 Identities = 47/96 (48%), Positives = 59/96 (61%)

Query:    14 RLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV 73
             RL IA+G A G+ YLHT A   IIH D+K TN L+D  +  KV DF +S+  P  N+NG 
Sbjct:   615 RLEIAIGAARGLHYLHTGAKYTIIHRDVKTTNILVDENWVAKVSDFGLSKTGP--NMNG- 671

Query:    74 VGHVSIVVKGT---------HTQQLTEKSDIYGLGI 100
              GHV+ VVKG+           QQLTEKSD+Y  G+
Sbjct:   672 -GHVTTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGV 706

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009860 "pollen tube growth" evidence=IGI;RCA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0090404 "pollen tube tip" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2087263 AT3G24790 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
 Identities = 45/99 (45%), Positives = 61/99 (61%)

Query:    14 RLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV 73
             R+ IALG A+GI YLH EADPP+I+ D+K++N LLD ++  K+ DF +++L PV    G 
Sbjct:   148 RIKIALGAAKGIEYLHDEADPPVIYRDLKSSNILLDPEYVAKLSDFGLAKLGPV----GD 203

Query:    74 VGHVSIVVKGTH---------TQQLTEKSDIYGLGIACL 103
               HVS  V GT+         T  LT KSD+Y  G+  L
Sbjct:   204 TLHVSSRVMGTYGYCAPEYQRTGYLTNKSDVYSFGVVLL 242

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2019863 AT1G79620 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 5.7e-17, P = 5.7e-17
 Identities = 60/164 (36%), Positives = 87/164 (53%)

Query:     1 MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
             +T R   ++    RL +ALG A G+ YLH  ADPPIIH D+K+TN LLD   T KV DF 
Sbjct:   723 LTGRSGITLDWKRRLRVALGSARGLAYLHELADPPIIHRDVKSTNILLDENLTAKVADFG 782

Query:    61 ISRLAPVPNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACLYM-----G 106
             +S+L      +   GHVS  VKGT          TQ+LTEKSD+Y  G+  + +      
Sbjct:   783 LSKLVS----DCTKGHVSTQVKGTLGYLDPEYYTTQKLTEKSDVYSFGVVMMELITAKQP 838

Query:   107 LYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENISSMLPE 150
             +   +Y+ R + L +   +D+       ++  R L ++ + LPE
Sbjct:   839 IEKGKYIVREIKLVMNKSDDDFYGLRDKMD--RSLRDVGT-LPE 879

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2098580 AT3G07070 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
 Identities = 45/99 (45%), Positives = 60/99 (60%)

Query:    14 RLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV 73
             R+ IALG A G+ YLH +A+PP+I+ D+KA N LLD +F  K+ DF +++L PV    G 
Sbjct:   180 RIRIALGAAMGLEYLHDKANPPVIYRDLKAANILLDGEFNAKLSDFGLAKLGPV----GD 235

Query:    74 VGHVSIVVKGTH---------TQQLTEKSDIYGLGIACL 103
               HVS  V GT+         T QLT KSD+Y  G+  L
Sbjct:   236 KQHVSSRVMGTYGYCAPEYQRTGQLTTKSDVYSFGVVLL 274

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2177202 AT5G39000 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
 Identities = 49/104 (47%), Positives = 57/104 (54%)

Query:     9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP 68
             +S   RL I +G A G+ YLHT A   IIH DIK TN LLD  F  KV DF +SR+ P  
Sbjct:   615 LSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVTKVSDFGLSRVGPT- 673

Query:    69 NINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACL 103
               +    HVS VVKGT           Q LTEKSD+Y  G+  L
Sbjct:   674 --SASQTHVSTVVKGTFGYLDPEYYRRQVLTEKSDVYSFGVVLL 715

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-11
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-08
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	6e-08
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-07
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	8e-07
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	1e-06
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-06
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	5e-06
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	5e-06
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	1e-05
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	2e-05
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	3e-05
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	3e-05
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	4e-05
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	5e-05
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	6e-05
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	6e-05
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	6e-05
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	7e-05
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	8e-05
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	8e-05
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-04
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	1e-04
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-04
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	3e-04
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	3e-04
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	4e-04
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	5e-04
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	5e-04
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	6e-04
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	6e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-04
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	7e-04
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	8e-04
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	0.001
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	0.001
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	0.001
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	0.001
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	0.002
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	0.002
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	0.003
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	0.003
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	0.003
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	0.004
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	0.004
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 20/145 (13%)

Query: 4   RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEIS 62
                +S    L I L + EG+ YLH+     IIH D+K  N LLDS     K+ DF +S
Sbjct: 84  ENEGKLSEDEILRILLQILEGLEYLHSN---GIIHRDLKPENILLDSDNGKVKLADFGLS 140

Query: 63  RLAPVPN-----INGVVGHVSI-VVKGTHTQQLTEKSDIYGLGIACLYMGLYSFEYLKRF 116
           +L          I G   +++  V+ G      +EKSDI+ LG+      LY    LK  
Sbjct: 141 KLLTSDKSLLKTIVGTPAYMAPEVLLGKGYY--SEKSDIWSLGVI-----LYELPELKDL 193

Query: 117 MSLALKYCEDETKARPSMLEVARQL 141
           +   L+    + + RPS  E+   L
Sbjct: 194 IRKMLQK---DPEKRPSAKEILEHL 215

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 21/112 (18%)

Query: 6   RRSVSLAMRL--HIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
            R   L+      IAL +  G+ YLH+     IIH D+K  N LLD     K+ DF +++
Sbjct: 90  SRGGPLSEDEAKKIALQILRGLEYLHSNG---IIHRDLKPENILLDENGVVKIADFGLAK 146

Query: 64  LAPVPNINGVVGHVSIVVKGTHT----------QQLTEKSDIYGLGIACLYM 105
                +       ++  V GT                 K D++ LG+    +
Sbjct: 147 KLLKSS-----SSLTTFV-GTPWYMAPEVLLGGNGYGPKVDVWSLGVILYEL 192

Length = 260

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 50.6 bits (122), Expect = 6e-08
 Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 53/177 (29%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           + ++SL   L  A+ +A+G+ YL        +H D+ A N L+      K+ DF +SR  
Sbjct: 99  KSTLSLKDLLSFAIQIAKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDV 155

Query: 66  PVPNINGVVGHVSIVVKGTH--------------TQQLTEKSDIYGLGIACLY----MGL 107
              +            K T                   T KSD++  G+  L+    +G 
Sbjct: 156 YDDDYY---------RKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGV-LLWEIFTLGA 205

Query: 108 --YS-------FEYLKRFMSLAL-KYCEDE------------TKARPSMLEVARQLE 142
             Y         EYL++   L   +YC DE             + RP+  E+  +LE
Sbjct: 206 TPYPGLSNEEVLEYLRKGYRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE 262

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 39/175 (22%), Positives = 61/175 (34%), Gaps = 52/175 (29%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           R  +SL+  L  AL +A G+ YL ++     IH D+ A N L+      K+ DF +SR  
Sbjct: 96  RPKLSLSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDL 152

Query: 66  PVPNINGVVGHVSIVVKGTH------------TQQLTEKSDIYGLGIACLYMGLYSF--- 110
                           +G                + T KSD++  G+  L+  +++    
Sbjct: 153 YD--------DDYYRKRGGKLPIRWMAPESLKEGKFTSKSDVWSFGV-LLWE-IFTLGEQ 202

Query: 111 -----------EYLKRFMSLAL-KYCEDE------------TKARPSMLEVARQL 141
                      EYLK    L     C  E             + RP+  E+   L
Sbjct: 203 PYPGMSNEEVLEYLKNGYRLPQPPNCPPELYDLMLQCWAEDPEDRPTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 16/92 (17%)

Query: 23  EGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVK 82
           EG+ YLH+     I+H DIK  N L+DS    K+ DF  ++       +   G  +  V+
Sbjct: 112 EGLAYLHSNG---IVHRDIKGANILVDSDGVVKLADFGCAKRLG----DIETGEGTGSVR 164

Query: 83  GT---------HTQQLTEKSDIYGLGIACLYM 105
           GT           ++    +DI+ LG   + M
Sbjct: 165 GTPYWMAPEVIRGEEYGRAADIWSLGCTVIEM 196

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
            + +SL+  L  AL +A G+ YL ++     IH D+ A N L+      K+ DF +SR
Sbjct: 97  PKELSLSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSR 151

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 21/124 (16%)

Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGH 76
           IA  + +G+ YLHT+    IIH DIK +N L++SK   K+ DF IS++      N +   
Sbjct: 104 IARQILKGLDYLHTKRH--IIHRDIKPSNLLINSKGEVKIADFGISKVLE----NTLDQC 157

Query: 77  VSIVVKGTHTQQLTE---------KSDIYGLGIAC--LYMGLYSFEYLK--RFMSLALKY 123
            + V  GT T    E          +DI+ LG+      +G + F       F  L    
Sbjct: 158 NTFV--GTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAI 215

Query: 124 CEDE 127
           C+  
Sbjct: 216 CDGP 219

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS-RLAPVPNINGVVG 75
           +   L +G+ YLH+     IIH DIKA N LL S    K+ DF +S +L+     N +VG
Sbjct: 103 VCKELLKGLEYLHSNG---IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVG 159

Query: 76  HVSI----VVKGTHTQQLTEKSDIYGLGIACLYM 105
                   V+ G        K+DI+ LGI  + +
Sbjct: 160 TPYWMAPEVINGKP---YDYKADIWSLGITAIEL 190

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
              ++L   L +AL +A+G+ YL        +H D+ A N L+      K+ DF +SR  
Sbjct: 96  GEKLTLKDLLQMALQIAKGMEYLE---SKNFVHRDLAARNCLVTENLVVKISDFGLSRDI 152

Query: 66  PVPNINGVVGHVSIVVKGT-----HTQQLTEKSDIYGLGI 100
              +     G   + +K          + T KSD++  G+
Sbjct: 153 YEDDYYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGV 192

Length = 258

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 37/164 (22%)

Query: 17  IALGL--AEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVP 68
           I  GL  A+G+ YL   A    +H D+ A N +LD  FT KV DF ++R         V 
Sbjct: 101 IGFGLQVAKGMEYL---ASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVH 157

Query: 69  NINGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI---------ACLYMGLYSFE---YLKR 115
           N  G    V  + ++   TQ+ T KSD++  G+         A  Y  + SF+   YL +
Sbjct: 158 NHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQ 217

Query: 116 FMSLAL-KYCED------------ETKARPSMLEVARQLENISS 146
              L   +YC D            + + RP+  E+  ++E I S
Sbjct: 218 GRRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIFS 261

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 20/93 (21%)

Query: 23  EGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV-----------PNIN 71
           +G+ YLH      IIH DIK  N L+D+K   K+ DF IS+               P++ 
Sbjct: 117 KGLNYLHNRG---IIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQ 173

Query: 72  GVVGHVSI-VVKGTHTQQLTEKSDIYGLGIACL 103
           G V  ++  VVK T     T K+DI+ LG  CL
Sbjct: 174 GSVFWMAPEVVKQT---SYTRKADIWSLG--CL 201

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 23  EGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR-----LAPVPNIN--GVVG 75
           EG+ YLH++    I+H D+KA N L+D+    K+ DF IS+          N++  G V 
Sbjct: 119 EGLAYLHSKG---ILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVF 175

Query: 76  HVSIVVKGTHTQQLTEKSDIYGLGIACLYM 105
            ++  V  +++Q  + K DI+ LG   L M
Sbjct: 176 WMAPEVIHSYSQGYSAKVDIWSLGCVVLEM 205

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 19/106 (17%)

Query: 16  HIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVG 75
            IA+ + EG+ YL+      I+H DIK +N L++S+   K+ DF +S          ++ 
Sbjct: 107 KIAVAVVEGLTYLYNVHR--IMHRDIKPSNILVNSRGQIKLCDFGVS--------GELIN 156

Query: 76  HVSIVVKGTHT---------QQLTEKSDIYGLGIACLYMGLYSFEY 112
            ++    GT T          + T KSD++ LGI+ + + L  F +
Sbjct: 157 SIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPF 202

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 16  HIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDF----EISRLAPVPNIN 71
                L EG+ YLH+     I+H DIK +N L+++    K+ DF      ++       N
Sbjct: 104 CYMKQLLEGLQYLHSNG---ILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTN 160

Query: 72  GVV 74
            V+
Sbjct: 161 RVI 163

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 16/91 (17%)

Query: 23  EGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDF----EISRLAPVPNINGVVG--- 75
           +G+ YLH++    +IH DIK+ N LL    + K+ DF    ++++       N VVG   
Sbjct: 127 QGLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGFAAQLTK--EKSKRNSVVGTPY 181

Query: 76  -HVSIVVKGTHTQQLTEKSDIYGLGIACLYM 105
                V+K    +    K DI+ LGI C+ M
Sbjct: 182 WMAPEVIKR---KDYGPKVDIWSLGIMCIEM 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 13/105 (12%)

Query: 16  HIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR-----LAPVPNI 70
            +A  +  GI YLH      I+H DIK +N L++S    K+ DF +SR     + P  + 
Sbjct: 172 DVARQILSGIAYLHRRH---IVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSS 228

Query: 71  NGVVGHVS---IVVKGTHTQQLTEKSDIYGLGIACL--YMGLYSF 110
            G + ++S   I     H        DI+ LG++ L  Y+G + F
Sbjct: 229 VGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPF 273

Length = 353

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 30/96 (31%)

Query: 23  EGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVK 82
           +G+ YLH +    +IH DIKA N L       K+ DF            GV   ++ V K
Sbjct: 110 QGLAYLHEQG---VIHRDIKAANILTTKDGVVKLADF------------GVATKLNDVSK 154

Query: 83  GTHT---------------QQLTEKSDIYGLGIACL 103
              +                  +  SDI+ LG   +
Sbjct: 155 DDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVI 190

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 41.5 bits (97), Expect = 6e-05
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 13/105 (12%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           + +R R  VS+   L  +L +AEG+ YL ++    ++H D+ A N L+      KV DF 
Sbjct: 89  LRTRGRALVSVIQLLQFSLDVAEGMEYLESKK---LVHRDLAARNILVSEDGVAKVSDFG 145

Query: 61  ISRLAPVPNINGVVGHVSIVVKGTHTQQL-----TEKSDIYGLGI 100
           ++R+  +      V +  + VK T  + L     + KSD++  G+
Sbjct: 146 LARVGSMG-----VDNSKLPVKWTAPEALKHKKFSSKSDVWSYGV 185

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 16/108 (14%)

Query: 4   RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
           + R  +S          +   + YLH      I+H D+K  N LLD     K+ DF ++R
Sbjct: 89  KKRGRLSEDEARFYLRQILSALEYLH---SKGIVHRDLKPENILLDEDGHVKLADFGLAR 145

Query: 64  -LAPVPNINGVVGHVSI------VVKGTHTQQLTEKSDIYGLGIACLY 104
            L P   +   VG  +       V+ G   +   +  DI+ LG+  LY
Sbjct: 146 QLDPGEKLTTFVG--TPEYMAPEVLLG---KGYGKAVDIWSLGV-ILY 187

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 32/105 (30%)

Query: 16  HIALGLAEGIL----YLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN 71
            +   +AE +L    YLH+     IIH DIK +N LL  K   K+ DF            
Sbjct: 105 KVLGKIAESVLKGLSYLHSRK---IIHRDIKPSNILLTRKGQVKLCDF------------ 149

Query: 72  GVVGHVSIVVKGTHT-------------QQLTEKSDIYGLGIACL 103
           GV G +   + GT T             +  +  SD++ LG+  L
Sbjct: 150 GVSGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLL 194

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 33/112 (29%)

Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------------- 63
           IA+ + +G+ YLH      IIH D+K +N L++S+   K+ DF +S              
Sbjct: 105 IAVAVLKGLTYLHE--KHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFVGT 162

Query: 64  ---LAPVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYMGLYSFEY 112
              +AP   I G     S+            KSDI+ LG++ + +    F Y
Sbjct: 163 SSYMAP-ERIQG--NDYSV------------KSDIWSLGLSLIELATGRFPY 199

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 45/150 (30%), Positives = 64/150 (42%), Gaps = 32/150 (21%)

Query: 15  LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVV 74
           L   + L   + YLH+     I+H DIK  N  L S    K+ DF IS++     ++  V
Sbjct: 106 LDWFVQLCLALKYLHSRK---ILHRDIKPQNIFLTSNGLVKLGDFGISKV-----LSSTV 157

Query: 75  GHVSIVVKGT---------HTQQLTEKSDIYGLGIACLYMGLYSFEYLKR------FMSL 119
                VV GT           +    KSDI+ LG  C+   LY    LK        + L
Sbjct: 158 DLAKTVV-GTPYYLSPELCQNKPYNYKSDIWSLG--CV---LYELCTLKHPFEGENLLEL 211

Query: 120 ALKYCEDETKARPSMLEVARQLEN-ISSML 148
           ALK  + +    PS    + +L N +SS+L
Sbjct: 212 ALKILKGQYPPIPSQ--YSSELRNLVSSLL 239

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
             L L EGI YLH   +  I+H DIKA N L+D++   K+ DF ++R
Sbjct: 120 YMLQLLEGINYLH---ENHILHRDIKAANILIDNQGILKIADFGLAR 163

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 15/113 (13%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
           SR R  ++LA +L  AL + EG+ YL  +     +H D+ A N L+      KV DF ++
Sbjct: 93  SRGRAVITLAQQLGFALDVCEGMEYLEEKN---FVHRDLAARNVLVSEDLVAKVSDFGLA 149

Query: 63  RLAPVPNINGVVGHVSIVVKGTHTQQL-----TEKSDIYGLGIACLYMGLYSF 110
           + A   +     G + +  K T  + L     + KSD++  GI  L   +YSF
Sbjct: 150 KEA---SQGQDSGKLPV--KWTAPEALREKKFSTKSDVWSFGI--LLWEIYSF 195

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 23  EGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
           +G+ YLH       IH DIKA N LL+ +   K+ DF +S
Sbjct: 110 KGLEYLH---SNKKIHRDIKAGNILLNEEGQAKLADFGVS 146

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEI 61
              +  +S +  L I   +   + YLH++    IIH DIK  N LLD      K+ DF +
Sbjct: 92  IGRKGPLSESEALFILAQILSALEYLHSK---GIIHRDIKPENILLDRDGRVVKLIDFGL 148

Query: 62  SRLAPVPNINGVVGHVSIVVKGT------------HTQQLTEKSDIYGLGIACLYM 105
           ++L P P     +  +     GT                 +  SDI+ LGI    +
Sbjct: 149 AKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYEL 204

Length = 384

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 11/92 (11%)

Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDF-EISRLAPVPNINGVVG 75
           I  G  +G+ YLH+      IH DIKA N LL    T K+ DF   S ++P    N  VG
Sbjct: 120 ICHGALQGLAYLHSHE---RIHRDIKAGNILLTEPGTVKLADFGSASLVSPA---NSFVG 173

Query: 76  ----HVSIVVKGTHTQQLTEKSDIYGLGIACL 103
                   V+      Q   K D++ LGI C+
Sbjct: 174 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCI 205

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 15  LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVV 74
           LHIA  +A G++YL   A    +H D+   N L+      K+ DF +SR     +   V 
Sbjct: 123 LHIAQQIAAGMVYL---ASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVG 179

Query: 75  GHVSIVVK-----GTHTQQLTEKSDIYGLGI 100
           GH  + ++         ++ T +SD++ LG+
Sbjct: 180 GHTMLPIRWMPPESIMYRKFTTESDVWSLGV 210

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           +  ++LA  L  A  + EG+ YLH++     IH D+ A N LLD+    K+ DF +++  
Sbjct: 101 KHKLNLAQLLLFAQQICEGMAYLHSQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAV 157

Query: 66  P 66
           P
Sbjct: 158 P 158

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 11/92 (11%)

Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDF-EISRLAPVPNINGVVG 75
           I  G  +G+ YLH+     +IH DIKA N LL      K+ DF   S+ +P    N  VG
Sbjct: 126 ITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASKSSPA---NSFVG 179

Query: 76  ----HVSIVVKGTHTQQLTEKSDIYGLGIACL 103
                   V+      Q   K D++ LGI C+
Sbjct: 180 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCI 211

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 9   VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP 68
           + L+  LHIA  +A G++YL   A    +H D+   N L+ +    K+ DF +SR     
Sbjct: 120 LGLSQMLHIASQIASGMVYL---ASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYST 176

Query: 69  NINGVVGHVSIVVK-----GTHTQQLTEKSDIYGLGI 100
           +   V GH  + ++         ++ T +SD++  G+
Sbjct: 177 DYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGV 213

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
           S   R++S   R  IA+G+A+ + +LH    P ++  ++     ++D K  P +      
Sbjct: 771 SEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHL------ 824

Query: 63  RLAP----VPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGI 100
           RL+       +    +    +  +   T+ +TEKSDIYG G+
Sbjct: 825 RLSLPGLLCTDTKCFISSAYVAPETRETKDITEKSDIYGFGL 866

Length = 968

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 38.8 bits (90), Expect = 7e-04
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 8   SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
           SVS+A  L++A+ +A G+ YL   A    +H D+   N L+ + +T K+ DF +SR
Sbjct: 125 SVSIANLLYMAVQIASGMKYL---ASLNFVHRDLATRNCLVGNHYTIKIADFGMSR 177

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 30/98 (30%)

Query: 23  EGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVK 82
            G+ YLH E     IH DIKA N LL  +   K+ DF            GV G ++  + 
Sbjct: 109 LGLEYLHEEGK---IHRDIKAANILLSEEGDVKLADF------------GVSGQLTSTMS 153

Query: 83  GTHT---------------QQLTEKSDIYGLGIACLYM 105
             +T                   EK+DI+ LGI  + +
Sbjct: 154 KRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIEL 191

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 26/123 (21%)

Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGH 76
           IA+ + +G+ YL +     I+H D+K +N L++++   K+ DF +S          +V  
Sbjct: 100 IAVAVVKGLTYLWSLK---ILHRDVKPSNMLVNTRGQVKLCDFGVST--------QLVNS 148

Query: 77  VSIVVKGTHTQQLTEK---------SDIYGLGIACLYMGLYSFEYLKRF------MSLAL 121
           ++    GT+     E+         SD++ LGI+ + + L  F Y +        M L L
Sbjct: 149 IAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQL 208

Query: 122 KYC 124
             C
Sbjct: 209 LQC 211

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 4   RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
           R R  ++L   L  +  + +G+ YL ++     IH D+ A N L++S+   K+ DF +++
Sbjct: 101 RHRDQINLKRLLLFSSQICKGMDYLGSQR---YIHRDLAARNILVESEDLVKISDFGLAK 157

Query: 64  LAP 66
           + P
Sbjct: 158 VLP 160

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 7   RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL 64
           + + +A  + +A  +AEG+ YL    +   IH D+ A N L+      KV DF ++RL
Sbjct: 99  QVLPVASLIDMACQVAEGMAYLE---EQNSIHRDLAARNILVGEDLVCKVADFGLARL 153

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 21  LAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR-LAPVPNINGVVG 75
           +   + YLH++    IIH DIK  N LLD +    + DF I+  + P        G
Sbjct: 109 IVLALEYLHSKG---IIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTSG 161

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDF-EISRLAPVPNINGVVG 75
           +  G  +G+ YLH+     +IH D+KA N LL      K+ DF   S +AP    N  VG
Sbjct: 120 VTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA---NXFVG 173

Query: 76  ----HVSIVVKGTHTQQLTEKSDIYGLGIACLYMG 106
                   V+      Q   K D++ LGI C+ + 
Sbjct: 174 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA 208

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 23  EGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
           EG+ YLH+     I+H DIK  N L DS    K+ DF  S+
Sbjct: 115 EGVEYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASK 152

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 15/115 (13%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           + SR R  +     L  +L + E + YL        +H D+ A N L+      KV DF 
Sbjct: 91  LRSRGRSVLGGDCLLKFSLDVCEAMEYLEANN---FVHRDLAARNVLVSEDNVAKVSDFG 147

Query: 61  ISRLAPVPNINGVVGHVSIVVKGTHTQQLTE-----KSDIYGLGIACLYMGLYSF 110
           +++ A      G      + VK T  + L E     KSD++  GI  L   +YSF
Sbjct: 148 LTKEASSTQDTG-----KLPVKWTAPEALREKKFSTKSDVWSFGI--LLWEIYSF 195

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 11/95 (11%)

Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDF-EISRLAPVPNINGVVG 75
           I  G  +G+ YLH+     +IH DIKA N LL      K+ DF   S  +P    N  VG
Sbjct: 130 ITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASIASPA---NSFVG 183

Query: 76  ----HVSIVVKGTHTQQLTEKSDIYGLGIACLYMG 106
                   V+      Q   K D++ LGI C+ + 
Sbjct: 184 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA 218

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 18/107 (16%)

Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS-RLAPVPNINGVVG 75
           IA+ + + + YLH++    +IH D+K +N L++     K+ DF IS  L     ++ V  
Sbjct: 108 IAVSIVKALEYLHSKLS--VIHRDVKPSNVLINRNGQVKLCDFGISGYL-----VDSVAK 160

Query: 76  HVSIVVK----------GTHTQQLTEKSDIYGLGIACLYMGLYSFEY 112
            +    K            + +    KSD++ LGI  + +    F Y
Sbjct: 161 TIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPY 207

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           +T R R  + +   L I   + EG+ YLH +    IIH D+K  N  ++      + D  
Sbjct: 147 LTKRSRP-LPIDQALIIEKQILEGLRYLHAQR---IIHRDVKTENIFINDVDQVCIGDLG 202

Query: 61  ISRLAPV--PNINGVVGHV-----SIVVKGTHTQQLTEKSDIYGLGIACLYMGLY 108
            ++  PV  P   G+ G V      ++ +  +      K+DI+  GI    M  Y
Sbjct: 203 AAQF-PVVAPAFLGLAGTVETNAPEVLARDKYNS----KADIWSAGIVLFEMLAY 252

Length = 357

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 9/98 (9%)

Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGH 76
           +++ + +G+ YL  +    I+H D+K +N L++S+   K+ DF +S        N  VG 
Sbjct: 108 VSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGT 165

Query: 77  VSIV----VKGTHTQQLTEKSDIYGLGIACLYMGLYSF 110
            S +    ++GTH    + +SDI+ +G++ + M +  +
Sbjct: 166 RSYMSPERLQGTH---YSVQSDIWSMGLSLVEMAIGRY 200

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 7   RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
           +S+S +  L++A  +A G+ YL        +H D+   N L+   +T K+ DF +SR
Sbjct: 125 KSLSFSTLLYMATQIASGMRYL---ESLNFVHRDLATRNCLVGKNYTIKIADFGMSR 178

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.98
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.97
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.96
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.96
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.96
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.96
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.96
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.96
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.96
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.96
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.95
KOG0198	313	consensus MEKK and related serine/threonine protei	99.95
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.95
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.95
PHA02988	283	hypothetical protein; Provisional	99.95
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.95
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.95
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.95
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.95
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.94
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.94
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.94
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.94
KOG0584	632	consensus Serine/threonine protein kinase [General	99.94
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.94
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.94
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.94
PHA02882	294	putative serine/threonine kinase; Provisional	99.94
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.94
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.94
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.94
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.94
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.94
KOG0578	550	consensus p21-activated serine/threonine protein k	99.94
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.94
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.94
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.94
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.94
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.94
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.94
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.94
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.94
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.94
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.94
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.94
PHA03212	391	serine/threonine kinase US3; Provisional	99.94
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.94
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.94
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.93
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.93
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.93
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.93
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.93
PTZ00284	467	protein kinase; Provisional	99.93
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.93
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.93
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.93
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.93
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.93
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.93
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.93
PTZ00036	440	glycogen synthase kinase; Provisional	99.93
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.93
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.93
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.93
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.93
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.93
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.93
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.93
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.93
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.93
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.93
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.93
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.93
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.93
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.93
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.93
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.93
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.93
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.93
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.93
PHA03207	392	serine/threonine kinase US3; Provisional	99.93
PHA03209	357	serine/threonine kinase US3; Provisional	99.93
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.93
PTZ00283	496	serine/threonine protein kinase; Provisional	99.93
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.93
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.93
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.93
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.93
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.93
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.93
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.93
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.93
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.93
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.93
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.93
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.93
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.93
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.93
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.93
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.93
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.93
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.93
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.93
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.93
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.93
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.93
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.93
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.93
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.93
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.93
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.93
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.92
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.92
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.92
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.92
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.92
PTZ00267	478	NIMA-related protein kinase; Provisional	99.92
KOG0589	426	consensus Serine/threonine protein kinase [General	99.92
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.92
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.92
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.92
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.92
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.92
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.92
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.92
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.92
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.92
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.92
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.92
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.92
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.92
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.92
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.92
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.92
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.92
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.92
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.92
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.92
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.92
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.92
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.92
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.92
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.92
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.92
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.92
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.92
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.92
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.92
PHA03211	461	serine/threonine kinase US3; Provisional	99.92
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.92
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.92
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.92
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.92
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.92
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.92
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.92
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.92
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.92
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.92
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.92
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.92
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.92
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.92
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.92
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.92
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.92
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.92
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.92
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.92
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.92
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.92
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.92
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.92
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.92
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.92
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.92
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.92
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.92
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.92
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.92
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.92
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.91
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.91
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.91
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.91
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.91
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.91
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.91
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.91
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.91
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.91
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.91
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.91
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.91
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.91
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.91
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.91
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.91
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.91
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.91
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.91
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.91
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.91
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.91
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.91
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.91
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.91
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.91
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.91
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.91
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.91
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.91
PLN00181	793	protein SPA1-RELATED; Provisional	99.91
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.91
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.91
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.91
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.91
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.91
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.91
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.91
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.91
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.91
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.91
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.91
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.91
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.91
PHA03210	501	serine/threonine kinase US3; Provisional	99.91
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.91
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.91
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.91
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.91
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.91
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.9
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.9
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.9
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.9
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.9
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.9
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.9
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.9
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.9
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.9
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.9
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.9
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.9
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.9
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.9
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.9
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.9
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.9
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.9
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.9
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.9
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.9
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.9
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.9
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.9
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.9
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.9
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.9
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.9
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.9
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.9
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.9
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.9
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.9
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.9
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.9
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.9
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.9
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.9
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.9
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.9
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.9
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.9
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.9
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.9
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.9
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.9
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.9
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.9
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.9
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.9
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.9
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.9
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.9
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.9
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.9
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.9
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.9
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.89
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.89
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.89
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.89
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.89
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.89
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.89
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.89
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.89
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.89
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.89
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.89
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.89
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.89
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.89
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.89
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.89
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.89
KOG0610	459	consensus Putative serine/threonine protein kinase	99.89
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.89
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.89
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.89
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.89
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.89
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.89
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.89
KOG0605	550	consensus NDR and related serine/threonine kinases	99.89
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.89
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.89
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.89
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.89
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.89
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.89
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.89
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.89
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.89
PLN00009	294	cyclin-dependent kinase A; Provisional	99.89
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.89
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.89
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.89
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.89
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.88
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.88
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.88
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.88
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.88
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.88
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.88
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.88
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.88
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.88
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.88
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.88
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.88
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.88
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.88
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.88
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.88
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.88
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.88
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.88
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.88
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.88
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.87
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.87
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.87
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.87
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.87
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.87
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.87
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.87
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.87
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.86
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.86
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.86
KOG3653	534	consensus Transforming growth factor beta/activin	99.86
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.86
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.86
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.86
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.86
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.85
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.85
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.85
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.84
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.84
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.83
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.83
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.82
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.82
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.82
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.82
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.82
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.81
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.81
KOG0586	596	consensus Serine/threonine protein kinase [General	99.81
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.8
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.8
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.8
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.79
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.78
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.77
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.77
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.77
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.76
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.74
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.72
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.71
KOG1152	772	consensus Signal transduction serine/threonine kin	99.71
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.69
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.64
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.62
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.58
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.57
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.57
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.56
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.55
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.53
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.52
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.48
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.47
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.46
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.44
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.38
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.35
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.31
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.31
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.28
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.21
PRK09188	365	serine/threonine protein kinase; Provisional	99.12
PRK12274	218	serine/threonine protein kinase; Provisional	99.07
PRK14879	211	serine/threonine protein kinase; Provisional	98.94
smart00090	237	RIO RIO-like kinase.	98.94
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	98.94
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.9
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.88
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.85
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.85
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.85
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.78
PRK10345	210	hypothetical protein; Provisional	98.73
COG4248	637	Uncharacterized protein with protein kinase and he	98.67
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.6
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.52
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.44
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.33
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.33
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.28
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.26
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.12
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.07
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.06
KOG1243	690	consensus Protein kinase [General function predict	97.93
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	97.9
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	97.75
PRK09902	216	hypothetical protein; Provisional	97.72
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	97.69
KOG3087	229	consensus Serine/threonine protein kinase [General	97.66
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.64
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.42
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.32
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	97.17
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.08
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	96.72
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	96.65
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	95.57
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	95.53
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	95.42
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	95.26
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	95.26
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	95.22
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	95.1
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	95.08
COG0661	517	AarF Predicted unusual protein kinase [General fun	95.06
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	94.99
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	94.77
PRK10271	188	thiK thiamine kinase; Provisional	94.63
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	94.57
PF01636	239	APH: Phosphotransferase enzyme family This family	94.45
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	94.41
PRK05231	319	homoserine kinase; Provisional	94.37
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	94.3
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	94.0
PLN02236	344	choline kinase	93.87
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	93.47
COG2334	331	Putative homoserine kinase type II (protein kinase	93.39
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	93.34
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	93.02
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	92.88
PRK09550	401	mtnK methylthioribose kinase; Reviewed	92.36
PRK06148	1013	hypothetical protein; Provisional	92.01
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	90.55
KOG1093	725	consensus Predicted protein kinase (contains TBC a	90.14
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	90.11
KOG1235	538	consensus Predicted unusual protein kinase [Genera	89.84
PRK11768	325	serine/threonine protein kinase; Provisional	89.42
KOG2268	465	consensus Serine/threonine protein kinase [Signal	88.73
COG3178	351	Predicted phosphotransferase related to Ser/Thr pr	87.94
PRK10593	297	hypothetical protein; Provisional	87.85
PHA03111	444	Ser/Thr kinase; Provisional	87.64
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	87.62
PLN02756	418	S-methyl-5-thioribose kinase	87.47
PRK12396	409	5-methylribose kinase; Reviewed	86.53
PRK06149	972	hypothetical protein; Provisional	86.51
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	86.29
PF05445	434	Pox_ser-thr_kin: Poxvirus serine/threonine protein	86.12
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	84.87
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	84.81

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.98  E-value=1e-32  Score=212.68  Aligned_cols=142  Identities=22%  Similarity=0.312  Sum_probs=122.2

Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC----ccccce
Q 044320            3 SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING----VVGHVS   78 (176)
Q Consensus         3 ~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~----~~~~~~   78 (176)
                      ++.+..++..+.+.|+.|||.|++||.+++   +|||||..+|||++.+..|||+|||+++...+..+..    .....|
T Consensus       294 ~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~---~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkW  370 (468)
T KOG0197|consen  294 TREGGLLNLPQLLDFAAQIAEGMAYLESKN---YIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKW  370 (468)
T ss_pred             hcCCCccchHHHHHHHHHHHHHHHHHHhCC---ccchhhhhhheeeccCceEEEcccccccccCCCceeecCCCCCCcee
Confidence            356788999999999999999999999999   9999999999999999999999999999655544432    234457


Q ss_pred             eeecCCCCCCCCcccchhhHhHHHHHHhcc-------------------------ChHHHHHHHHHHHhhcccCCCCCCC
Q 044320           79 IVVKGTHTQQLTEKSDIYGLGIACLYMGLY-------------------------SFEYLKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        79 ~~~~~~~~~~~~~~~Dv~s~G~~l~~l~~~-------------------------~~~~~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      ++|+......|+.+|||||||++|||+.+.                         |..++..+.++|+.||..+|++|||
T Consensus       371 tAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPt  450 (468)
T KOG0197|consen  371 TAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGYRLPRPEGCPDEVYELMKSCWHEDPEDRPT  450 (468)
T ss_pred             cCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccCcCCCCCCCCHHHHHHHHHHhhCCcccCCC
Confidence            778888899999999999999999999442                         3334567999999999999999999


Q ss_pred             HHHHHHHHHhhhhc
Q 044320          134 MLEVARQLENISSM  147 (176)
Q Consensus       134 ~~~i~~~l~~~~~~  147 (176)
                      |+.+...|+.+...
T Consensus       451 F~~L~~~l~~~~~~  464 (468)
T KOG0197|consen  451 FETLREVLEDFFTS  464 (468)
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999999887664

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-31  Score=204.99  Aligned_cols=144  Identities=34%  Similarity=0.484  Sum_probs=122.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-CeEEeecCCcccCCCC--CCCCccccceeee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF-TPKVFDFEISRLAPVP--NINGVVGHVSIVV   81 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~-~~~l~dfg~~~~~~~~--~~~~~~~~~~~~~   81 (176)
                      .+..|++..++.+|.|||.||.|||+++.  |||||||+.|+|++.++ ++||+|||+++.....  ......|++.+++
T Consensus       135 ~~~~l~~~~~l~~aldiArGm~YLH~~~~--iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMA  212 (362)
T KOG0192|consen  135 RKRKLPLKVRLRIALDIARGMEYLHSEGP--IIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTSMTSVAGTYRWMA  212 (362)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHhcCCC--eeecccChhhEEEcCCCCEEEECCCccceeeccccccccCCCCCccccC
Confidence            57889999999999999999999999853  89999999999999997 9999999999876643  2333456666666


Q ss_pred             cCCCC---CCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCCC
Q 044320           82 KGTHT---QQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        82 ~~~~~---~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      |+...   ..|+.++||||||+++||+.++..||.                         ..+..++..||..+|..||+
T Consensus       213 PEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~  292 (362)
T KOG0192|consen  213 PEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRPPIPKECPPHLSSLMERCWLVDPSRRPS  292 (362)
T ss_pred             hhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCC
Confidence            66654   469999999999999999988876652                         35889999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCC
Q 044320          134 MLEVARQLENISSMLPE  150 (176)
Q Consensus       134 ~~~i~~~l~~~~~~~~~  150 (176)
                      |.+++..|+.+......
T Consensus       293 f~ei~~~l~~~~~~~~~  309 (362)
T KOG0192|consen  293 FLEIVSRLESIMSHISS  309 (362)
T ss_pred             HHHHHHHHHHHHHhhcc
Confidence            99999999988886544

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.96  E-value=1.4e-30  Score=193.59  Aligned_cols=131  Identities=28%  Similarity=0.401  Sum_probs=114.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT-   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~-   84 (176)
                      +++++...-+++.++++||.|||. ++   ||||||||.|+|+..+|.+||+|||+++..-........|+..|+.|+. 
T Consensus       173 g~i~E~~L~~ia~~VL~GL~YLh~~~~---IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~a~tfvGT~~YMsPERi  249 (364)
T KOG0581|consen  173 GRIPEPVLGKIARAVLRGLSYLHEERK---IIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSIANTFVGTSAYMSPERI  249 (364)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhccC---eeeccCCHHHeeeccCCCEEeccccccHHhhhhhcccccccccccChhhh
Confidence            569999999999999999999995 77   9999999999999999999999999999877776667778777766555 


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH------------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      .+..|+.++||||||+.++|+.+|..|+                              ..++++++..|++.||.+||+.
T Consensus       250 ~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~  329 (364)
T KOG0581|consen  250 SGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSA  329 (364)
T ss_pred             cCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCH
Confidence            4779999999999999999997775544                              2358999999999999999999


Q ss_pred             HHHHHH
Q 044320          135 LEVARQ  140 (176)
Q Consensus       135 ~~i~~~  140 (176)
                      .++++.
T Consensus       330 ~qLl~H  335 (364)
T KOG0581|consen  330 KQLLQH  335 (364)
T ss_pred             HHHhcC
Confidence            988764

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=9.7e-30  Score=194.18  Aligned_cols=135  Identities=16%  Similarity=0.158  Sum_probs=114.9

Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeee
Q 044320            3 SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVV   81 (176)
Q Consensus         3 ~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~   81 (176)
                      +.+++.|++++++.|+.||++||+|+|++|   +.|||+||+|||+..+..+||+|||+++...... ++....++||-+
T Consensus       101 K~R~r~fse~~irnim~QilqGL~hiHk~G---fFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpPYTeYVSTRWYRA  177 (538)
T KOG0661|consen  101 KDRNRLFSESDIRNIMYQILQGLAHIHKHG---FFHRDLKPENILISGNDVIKIADFGLAREVRSKPPYTEYVSTRWYRA  177 (538)
T ss_pred             hhcCCcCCHHHHHHHHHHHHHHHHHHHhcC---cccccCChhheEecccceeEecccccccccccCCCcchhhhcccccc
Confidence            344889999999999999999999999999   9999999999999999999999999999877654 445567888887


Q ss_pred             cCCC--CCCCCcccchhhHhHHHHHHhccChHH-----------------------------------------------
Q 044320           82 KGTH--TQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------------------------------  112 (176)
Q Consensus        82 ~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------------------------------  112 (176)
                      |+..  ..-|+.+.||||+||+++|+..-.+-|                                               
T Consensus       178 PEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~  257 (538)
T KOG0661|consen  178 PEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLK  257 (538)
T ss_pred             hHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChH
Confidence            7765  788999999999999999883222211                                               


Q ss_pred             ------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 ------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 ------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                            ..+..+++.+|+.+||.+|||++++++.
T Consensus       258 ~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  258 DLLPNASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             HhCcccCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence                  2247889999999999999999998764

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.1e-29  Score=183.36  Aligned_cols=140  Identities=19%  Similarity=0.259  Sum_probs=115.1

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCC-CCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceee
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEA-DPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIV   80 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~-~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~   80 (176)
                      +.++.++++++|+++.|++.||.+||.+- .+.++||||||.||+++.+|.+|++|||+++.......  ....|+++++
T Consensus       116 ~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYM  195 (375)
T KOG0591|consen  116 KQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYM  195 (375)
T ss_pred             hccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhcchhHHHHhhcCCCccc
Confidence            56778999999999999999999999841 23499999999999999999999999999998776543  3456777777


Q ss_pred             ecCC-CCCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      .|+. ...+|+.++||||+||++|||..-..||                         ...+..++..|+..||+.||+.
T Consensus       196 SPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t  275 (375)
T KOG0591|consen  196 SPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYPPLPDEHYSTDLRELINMCIAVDPEQRPDT  275 (375)
T ss_pred             CHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCCCCcHHHhhhHHHHHHHHHccCCcccCCCc
Confidence            6554 5889999999999999999994444433                         4568899999999999999996


Q ss_pred             HHHHHHHHh
Q 044320          135 LEVARQLEN  143 (176)
Q Consensus       135 ~~i~~~l~~  143 (176)
                      ..++..+..
T Consensus       276 ~~~v~di~~  284 (375)
T KOG0591|consen  276 VPYVQDIQS  284 (375)
T ss_pred             chHHHHHHH
Confidence            555555543

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.96  E-value=2.3e-29  Score=196.76  Aligned_cols=142  Identities=23%  Similarity=0.381  Sum_probs=119.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCC----CCCCCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP----VPNINGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~----~~~~~~~~~~~~~~~   81 (176)
                      +.+|+..+.++||.|+|+|+.|||+++   |||||||..||++.++++|||+|||++....    ........++..|.+
T Consensus       482 etkfdm~~~idIAqQiaqGM~YLHAK~---IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmA  558 (678)
T KOG0193|consen  482 ETKFDMNTTIDIAQQIAQGMDYLHAKN---IIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMA  558 (678)
T ss_pred             hhhhhHHHHHHHHHHHHHhhhhhhhhh---hhhhhccccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhc
Confidence            467899999999999999999999999   9999999999999999999999999986532    223333445555554


Q ss_pred             cCC----CCCCCCcccchhhHhHHHHHHhccChHH----------------------------HHHHHHHHHhhcccCCC
Q 044320           82 KGT----HTQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------LKRFMSLALKYCEDETK  129 (176)
Q Consensus        82 ~~~----~~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------~~~l~~l~~~~~~~~p~  129 (176)
                      ++.    ...+|+.++||||||+++|||+++..||                            ++.+.+|+..||..+++
T Consensus       559 PEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~  638 (678)
T KOG0193|consen  559 PEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDRE  638 (678)
T ss_pred             HHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEecccccCccchhhhccCHHHHHHHHHHHHhcCcc
Confidence            443    3788999999999999999998888776                            34688999999999999


Q ss_pred             CCCCHHHHHHHHHhhhhcCCC
Q 044320          130 ARPSMLEVARQLENISSMLPE  150 (176)
Q Consensus       130 ~Rp~~~~i~~~l~~~~~~~~~  150 (176)
                      +||.|.+|+..|+.+...+|.
T Consensus       639 eRP~F~~il~~l~~l~~~~pk  659 (678)
T KOG0193|consen  639 ERPLFPQLLSKLEELLPSLPK  659 (678)
T ss_pred             cCccHHHHHHHHHHhhhcccc
Confidence            999999999988888775533

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.96  E-value=1.7e-29  Score=183.97  Aligned_cols=132  Identities=19%  Similarity=0.196  Sum_probs=113.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~   82 (176)
                      ....++...+.++++|++.|+.|||+++   +|||||||+||+++.++.+|+||||+++....++  ++....++||.+|
T Consensus        94 ~p~G~~~~~vk~~l~Q~l~ai~~cHk~n---~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~YTDYVATRWYRaP  170 (396)
T KOG0593|consen   94 YPNGVPSELVKKYLYQLLKAIHFCHKNN---CIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNYTDYVATRWYRAP  170 (396)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhhhhhhcC---eecccCChhheEEecCCcEEeccchhhHhhcCCcchhhhhhhhhhccCh
Confidence            4556889999999999999999999999   9999999999999999999999999999887544  3445677888887


Q ss_pred             CCC--CCCCCcccchhhHhHHHHHHhccChHHHH----------------------------------------------
Q 044320           83 GTH--TQQLTEKSDIYGLGIACLYMGLYSFEYLK----------------------------------------------  114 (176)
Q Consensus        83 ~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~----------------------------------------------  114 (176)
                      ++.  ..+|+.+.||||+||++.||.+|.+-|++                                              
T Consensus       171 ELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe  250 (396)
T KOG0593|consen  171 ELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLE  250 (396)
T ss_pred             hhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchh
Confidence            776  47899999999999999999777665532                                              


Q ss_pred             --------HHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          115 --------RFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       115 --------~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                              -+.+++++|++.||.+|++.++++.
T Consensus       251 ~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~  283 (396)
T KOG0593|consen  251 RKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLH  283 (396)
T ss_pred             hhcccchHHHHHHHHHHhcCCccccccHHHHhc
Confidence                    2678999999999999999888753

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.96  E-value=4.8e-29  Score=192.95  Aligned_cols=132  Identities=21%  Similarity=0.236  Sum_probs=113.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---------------   70 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---------------   70 (176)
                      -+.|++..++.|+.||..||+|||+.|   ||||||||+|||++.+++++|+|||.++.+.....               
T Consensus       168 ~Gsfde~caR~YAAeIldAleylH~~G---IIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~  244 (604)
T KOG0592|consen  168 YGSFDETCARFYAAEILDALEYLHSNG---IIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRR  244 (604)
T ss_pred             hCcchHHHHHHHHHHHHHHHHHHHhcC---ceeccCChhheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcc
Confidence            467999999999999999999999999   99999999999999999999999999987643211               


Q ss_pred             CCccccceeeecCCC-CCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhccc
Q 044320           71 NGVVGHVSIVVKGTH-TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCED  126 (176)
Q Consensus        71 ~~~~~~~~~~~~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~  126 (176)
                      ....|++.|..|++. ....+.++|+|+|||++|+|+.|.+||-                       +...+|+.+++..
T Consensus       245 ~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~~l~y~fp~~fp~~a~dLv~KLLv~  324 (604)
T KOG0592|consen  245 SSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQALDYEFPEGFPEDARDLIKKLLVR  324 (604)
T ss_pred             cceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHcc
Confidence            235677767666655 6677889999999999999999998873                       4588999999999


Q ss_pred             CCCCCCCHHHHHHH
Q 044320          127 ETKARPSMLEVARQ  140 (176)
Q Consensus       127 ~p~~Rp~~~~i~~~  140 (176)
                      ||..|++.++|.++
T Consensus       325 dp~~Rlt~~qIk~H  338 (604)
T KOG0592|consen  325 DPSDRLTSQQIKAH  338 (604)
T ss_pred             CccccccHHHHhhC
Confidence            99999999888654

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7.2e-29  Score=200.17  Aligned_cols=140  Identities=24%  Similarity=0.321  Sum_probs=121.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCcccc-----ceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGH-----VSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~-----~~~~   80 (176)
                      +.+|+..+.+.||.|||.|+.||.++.   ||||||..+|+|+.++..|||+|||+++.....+++...+.     +|.+
T Consensus       597 ~~~L~~~q~L~iA~QIAaGM~YLs~~~---FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMp  673 (774)
T KOG1026|consen  597 PPPLSTSQFLHIATQIAAGMEYLSSHH---FVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMP  673 (774)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCc---ccccchhhhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCC
Confidence            456999999999999999999999998   99999999999999999999999999998887777655433     4555


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-------------------------cChHHHHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-------------------------YSFEYLKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-------------------------~~~~~~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++.+..++|+++||||||||+|||+.+                         .+...|.+++++|..||+.+|++||+|.
T Consensus       674 pEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~  753 (774)
T KOG1026|consen  674 PESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAGQLLSCPENCPTEVYSLMLECWNENPKRRPSFK  753 (774)
T ss_pred             HHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcCCcccCCCCCCHHHHHHHHHHhhcCcccCCCHH
Confidence            556669999999999999999999833                         3333456799999999999999999999


Q ss_pred             HHHHHHHhhhhcC
Q 044320          136 EVARQLENISSML  148 (176)
Q Consensus       136 ~i~~~l~~~~~~~  148 (176)
                      +|-..|+......
T Consensus       754 eI~~~L~~~~~~s  766 (774)
T KOG1026|consen  754 EIHSRLQAWAQAS  766 (774)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999776653

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.96  E-value=1.9e-28  Score=187.54  Aligned_cols=138  Identities=17%  Similarity=0.254  Sum_probs=111.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccc-eee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHV-SIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~-~~~   80 (176)
                      +..+++.++..++.|++.||+|||+.+   ++||||||+||+++.++.++++|||+++........    ...+.. |.+
T Consensus       168 ~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~a  244 (338)
T cd05102         168 KSPLTMEDLICYSFQVARGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMA  244 (338)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccC
Confidence            456999999999999999999999999   999999999999999999999999998764322211    111122 334


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH-------------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL-------------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      |+......++.++||||||+++||+.+ +..||.                         ..+.+++.+||..+|.+||++
T Consensus       245 PE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~  324 (338)
T cd05102         245 PESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTF  324 (338)
T ss_pred             cHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCH
Confidence            444456778999999999999999975 554432                         247889999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 044320          135 LEVARQLENISS  146 (176)
Q Consensus       135 ~~i~~~l~~~~~  146 (176)
                      .++++.|+++..
T Consensus       325 ~el~~~l~~~~~  336 (338)
T cd05102         325 SALVEILGDLLQ  336 (338)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1e-28  Score=193.21  Aligned_cols=133  Identities=21%  Similarity=0.270  Sum_probs=115.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC-CC-CCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP-NI-NGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~-~~-~~~~~~~~~~~~   82 (176)
                      +++.|++.+++.|..||+.||.|||+++   |+|||||..|++++++..+||+|||++.....+ +. ....|++.|-+|
T Consensus       111 rrk~ltEpEary~l~QIv~GlkYLH~~~---IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAP  187 (592)
T KOG0575|consen  111 RRKPLTEPEARYFLRQIVEGLKYLHSLG---IIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAP  187 (592)
T ss_pred             hcCCCCcHHHHHHHHHHHHHHHHHHhcC---ceecccchhheeecCcCcEEecccceeeeecCcccccceecCCCcccCh
Confidence            5788999999999999999999999999   999999999999999999999999999876644 22 234566666555


Q ss_pred             CC-CCCCCCcccchhhHhHHHHHHhccChHHHH-----------------------HHHHHHHhhcccCCCCCCCHHHHH
Q 044320           83 GT-HTQQLTEKSDIYGLGIACLYMGLYSFEYLK-----------------------RFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        83 ~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~-----------------------~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                      +. .....+..+||||+||++|-++.|.+||..                       +..+||.++++.+|.+||++++|+
T Consensus       188 EVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL  267 (592)
T KOG0575|consen  188 EVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVL  267 (592)
T ss_pred             hHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCcccccccCHHHHHHHHHHhcCCcccCCCHHHHh
Confidence            54 467788999999999999999999999853                       367899999999999999999998


Q ss_pred             HH
Q 044320          139 RQ  140 (176)
Q Consensus       139 ~~  140 (176)
                      ..
T Consensus       268 ~h  269 (592)
T KOG0575|consen  268 DH  269 (592)
T ss_pred             cC
Confidence            64

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=9.2e-29  Score=184.99  Aligned_cols=135  Identities=21%  Similarity=0.258  Sum_probs=112.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-CCCeEEeecCCcccCCC-----CCCCCccccceeee
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-KFTPKVFDFEISRLAPV-----PNINGVVGHVSIVV   81 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-~~~~~l~dfg~~~~~~~-----~~~~~~~~~~~~~~   81 (176)
                      .|+++.+.++.+|++.||+|+|++|   +||+||||.|||++. ++.+||+|||.++....     .......|++.+++
T Consensus       113 ~l~E~~v~~ytr~iL~GL~ylHs~g---~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~ma  189 (313)
T KOG0198|consen  113 KLPEPLVRRYTRQILEGLAYLHSKG---IVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMA  189 (313)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCC---EeccCcccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccC
Confidence            7999999999999999999999999   999999999999999 79999999999886653     11223456666666


Q ss_pred             cCCCCCCCC--cccchhhHhHHHHHHhccChHHHH--------------------------HHHHHHHhhcccCCCCCCC
Q 044320           82 KGTHTQQLT--EKSDIYGLGIACLYMGLYSFEYLK--------------------------RFMSLALKYCEDETKARPS  133 (176)
Q Consensus        82 ~~~~~~~~~--~~~Dv~s~G~~l~~l~~~~~~~~~--------------------------~l~~l~~~~~~~~p~~Rp~  133 (176)
                      |+.......  .++||||+||++.||+++..||.+                          +.++++.+|+..+|++|||
T Consensus       190 PEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpt  269 (313)
T KOG0198|consen  190 PEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLIGREDSLPEIPDSLSDEAKDFLRKCFKRDPEKRPT  269 (313)
T ss_pred             chhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcchHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhhcCcccCcC
Confidence            665542333  499999999999999999888765                          4788999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 044320          134 MLEVARQLENIS  145 (176)
Q Consensus       134 ~~~i~~~l~~~~  145 (176)
                      +.++++.---..
T Consensus       270 a~eLL~hpf~~~  281 (313)
T KOG0198|consen  270 AEELLEHPFLKQ  281 (313)
T ss_pred             HHHHhhChhhhc
Confidence            999988765433

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=7.5e-28  Score=185.13  Aligned_cols=139  Identities=38%  Similarity=0.599  Sum_probs=113.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC-CCCCCc--cccceeeecCC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV-PNINGV--VGHVSIVVKGT   84 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~-~~~~~~--~~~~~~~~~~~   84 (176)
                      .|+|.++++||.++|.||+|||....++|||||||+.|||+|+++..|++|||+++..+. ......  .|+.+|.+|+.
T Consensus       170 ~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy  249 (361)
T KOG1187|consen  170 PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEY  249 (361)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccceeeecCCCCccCChhh
Confidence            889999999999999999999998777899999999999999999999999999976654 322111  45555655544


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChH------------------------------------------HHHHHHHHHH
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFE------------------------------------------YLKRFMSLAL  121 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~------------------------------------------~~~~l~~l~~  121 (176)
                       ..+..+.++||||||++++|+.++..+                                          ....+..+..
T Consensus       250 ~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~  329 (361)
T KOG1187|consen  250 ASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELAL  329 (361)
T ss_pred             hccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHH
Confidence             367889999999999999998554432                                          1223667888


Q ss_pred             hhcccCCCCCCCHHHHHHHHHhhhh
Q 044320          122 KYCEDETKARPSMLEVARQLENISS  146 (176)
Q Consensus       122 ~~~~~~p~~Rp~~~~i~~~l~~~~~  146 (176)
                      +|++.+|+.||+|.++++.|+.+..
T Consensus       330 ~C~~~~~~~RP~m~~Vv~~L~~~~~  354 (361)
T KOG1187|consen  330 RCLRPDPKERPTMSQVVKELEGILS  354 (361)
T ss_pred             HHcCcCCCcCcCHHHHHHHHHhhcc
Confidence            9999999999999999999965544

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.95  E-value=2.8e-28  Score=197.17  Aligned_cols=146  Identities=21%  Similarity=0.291  Sum_probs=117.5

Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----------
Q 044320            2 TSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----------   70 (176)
Q Consensus         2 ~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----------   70 (176)
                      +.|-..+|++.++++|+.|+|+|+.+||.. .+|+||||||.+|||++.+|..||||||.+...-....           
T Consensus       134 n~Rlq~~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~e  212 (738)
T KOG1989|consen  134 NTRLQTRLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEE  212 (738)
T ss_pred             HHHHhccCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHH
Confidence            344556699999999999999999999998 78899999999999999999999999998865332221           


Q ss_pred             -CCccccceeeecCCC---CCCCCcccchhhHhHHHHHHhccChHH---------------------HHHHHHHHHhhcc
Q 044320           71 -NGVVGHVSIVVKGTH---TQQLTEKSDIYGLGIACLYMGLYSFEY---------------------LKRFMSLALKYCE  125 (176)
Q Consensus        71 -~~~~~~~~~~~~~~~---~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------~~~l~~l~~~~~~  125 (176)
                       .......|..|+.+.   +..++.|+||||+||+||.++....||                     .+.+.+||..||+
T Consensus       213 I~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~laIlng~Y~~P~~p~ys~~l~~LI~~mL~  292 (738)
T KOG1989|consen  213 IEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLAILNGNYSFPPFPNYSDRLKDLIRTMLQ  292 (738)
T ss_pred             HHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcceeEEeccccCCCCccHHHHHHHHHHHHhc
Confidence             011111233333332   778899999999999999886655554                     5679999999999


Q ss_pred             cCCCCCCCHHHHHHHHHhhhhcC
Q 044320          126 DETKARPSMLEVARQLENISSML  148 (176)
Q Consensus       126 ~~p~~Rp~~~~i~~~l~~~~~~~  148 (176)
                      .+|.+||++.++++.+-+++..-
T Consensus       293 ~nP~~RPnI~Qv~~~~~~l~~~~  315 (738)
T KOG1989|consen  293 PNPDERPNIYQVLEEIFELANKP  315 (738)
T ss_pred             cCcccCCCHHHHHHHHHHHhcCC
Confidence            99999999999999999888764

>PHA02988 hypothetical protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=179.36  Aligned_cols=137  Identities=15%  Similarity=0.209  Sum_probs=112.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcC-CCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTE-ADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~-~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~   84 (176)
                      ...+++.....++.|++.||.|+|+. +   ++||||||+|++++.++.+|++|||+++....... ...+...+.+|+.
T Consensus       116 ~~~~~~~~~~~i~~~i~~~l~~lH~~~~---~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~y~aPE~  191 (283)
T PHA02988        116 EKDLSFKTKLDMAIDCCKGLYNLYKYTN---KPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPF-KNVNFMVYFSYKM  191 (283)
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhcCC---CCCCcCChhhEEECCCCcEEEcccchHhhhccccc-cccCcccccCHHH
Confidence            35689999999999999999999984 6   88999999999999999999999999876543322 2223334444444


Q ss_pred             C---CCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           85 H---TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        85 ~---~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      .   ...++.++|||||||++||+.++..||                         +..+.+++.+||+.+|.+||++.+
T Consensus       192 ~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~e  271 (283)
T PHA02988        192 LNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKE  271 (283)
T ss_pred             hhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHH
Confidence            3   257899999999999999998877665                         235889999999999999999999


Q ss_pred             HHHHHHhhhh
Q 044320          137 VARQLENISS  146 (176)
Q Consensus       137 i~~~l~~~~~  146 (176)
                      +++.|+.+..
T Consensus       272 ll~~l~~~~~  281 (283)
T PHA02988        272 ILYNLSLYKF  281 (283)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=5.1e-28  Score=179.37  Aligned_cols=133  Identities=19%  Similarity=0.191  Sum_probs=113.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC----CCCCCccccceee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV----PNINGVVGHVSIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~----~~~~~~~~~~~~~   80 (176)
                      .++.|+.+.+..++.|++.||+|+|+.+   ++||||||.|++++.+..+|++|||+++....    ..-+....+.|+.
T Consensus       118 ~~~~L~d~H~q~f~YQiLrgLKyiHSAn---ViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYR  194 (359)
T KOG0660|consen  118 SQQDLTDDHAQYFLYQILRGLKYIHSAN---VIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYR  194 (359)
T ss_pred             cCccccHHHHHHHHHHHHHhcchhhccc---ccccccchhheeeccCCCEEeccccceeeccccCcccchhcceeeeeec
Confidence            3455999999999999999999999999   99999999999999999999999999998753    2223445566777


Q ss_pred             ecCCC--CCCCCcccchhhHhHHHHHHhccChHHHH--------------------------------------------
Q 044320           81 VKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEYLK--------------------------------------------  114 (176)
Q Consensus        81 ~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~--------------------------------------------  114 (176)
                      +|++.  ...|+.+.||||.||++.||+++++-|++                                            
T Consensus       195 APElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~  274 (359)
T KOG0660|consen  195 APELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQP  274 (359)
T ss_pred             CHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCC
Confidence            76654  88999999999999999999887776643                                            


Q ss_pred             ----------HHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          115 ----------RFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       115 ----------~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                ...+++.+++..||.+|+|+++.++.
T Consensus       275 f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~h  310 (359)
T KOG0660|consen  275 FSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAH  310 (359)
T ss_pred             HHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcC
Confidence                      26789999999999999999998765

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.6e-28  Score=184.79  Aligned_cols=132  Identities=22%  Similarity=0.258  Sum_probs=109.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC---CCeEEeecCCcccCCCCCCC-Cccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK---FTPKVFDFEISRLAPVPNIN-GVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~---~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~   81 (176)
                      ++.+.++....++.|++.|+.|||++|   |+||||||+|||+..+   ..+|++|||+++..+..... ...|++.|.+
T Consensus       270 nk~l~ed~~K~~f~Qll~avkYLH~~G---I~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvA  346 (475)
T KOG0615|consen  270 NKYLREDLGKLLFKQLLTAVKYLHSQG---IIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVA  346 (475)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHcC---cccccCCcceEEeccCCcceEEEecccchhhccccceehhhhcCCccccC
Confidence            456888899999999999999999999   9999999999999766   67999999999987644432 3457777777


Q ss_pred             cCCC-C---CCCCcccchhhHhHHHHHHhccChHHHH----------------------------HHHHHHHhhcccCCC
Q 044320           82 KGTH-T---QQLTEKSDIYGLGIACLYMGLYSFEYLK----------------------------RFMSLALKYCEDETK  129 (176)
Q Consensus        82 ~~~~-~---~~~~~~~Dv~s~G~~l~~l~~~~~~~~~----------------------------~l~~l~~~~~~~~p~  129 (176)
                      |+.. .   ..+..+.|+||+||++|-+++|.+||.+                            +..++|.+++..||+
T Consensus       347 PEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~  426 (475)
T KOG0615|consen  347 PEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPE  426 (475)
T ss_pred             hhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcc
Confidence            6654 2   2234588999999999988888888754                            478899999999999


Q ss_pred             CCCCHHHHHHH
Q 044320          130 ARPSMLEVARQ  140 (176)
Q Consensus       130 ~Rp~~~~i~~~  140 (176)
                      .||+++++++.
T Consensus       427 ~R~s~~eaL~h  437 (475)
T KOG0615|consen  427 NRPSADEALNH  437 (475)
T ss_pred             cCcCHHHHhcC
Confidence            99999988764

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.95  E-value=5.2e-28  Score=179.79  Aligned_cols=125  Identities=19%  Similarity=0.173  Sum_probs=107.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC-C-CCCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP-N-INGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~-~-~~~~~~~~~~~~~   82 (176)
                      +.+.|+++.+..|+++|+.||.|||+++   ||||||||+|||++.+|+++|+|||+++..-.. . .....|+..|++|
T Consensus       118 ~eg~F~E~~arfYlaEi~lAL~~LH~~g---IiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAP  194 (357)
T KOG0598|consen  118 REGRFSEDRARFYLAEIVLALGYLHSKG---IIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAP  194 (357)
T ss_pred             hcCCcchhHHHHHHHHHHHHHHHHHhCC---eeeccCCHHHeeecCCCcEEEeccccchhcccCCCccccccCCccccCh
Confidence            4567999999999999999999999999   999999999999999999999999999864333 2 2334677777766


Q ss_pred             CCC-CCCCCcccchhhHhHHHHHHhccChHHHH------------------------HHHHHHHhhcccCCCCCC
Q 044320           83 GTH-TQQLTEKSDIYGLGIACLYMGLYSFEYLK------------------------RFMSLALKYCEDETKARP  132 (176)
Q Consensus        83 ~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~------------------------~l~~l~~~~~~~~p~~Rp  132 (176)
                      +.. ...|+..+|+||+|+++|||+++.+||..                        +.++++.+++..+|++|-
T Consensus       195 Eil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k~~~~p~~ls~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  195 EILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGKLPLPPGYLSEEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             HHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCcCCCCCccCCHHHHHHHHHHhccCHHHhc
Confidence            654 78999999999999999999999999853                        367788888888888884

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.95  E-value=8.2e-28  Score=199.83  Aligned_cols=140  Identities=24%  Similarity=0.304  Sum_probs=118.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccc-----cceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVG-----HVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~-----~~~~~   80 (176)
                      ...|+..+.+.++.|||+|+.||++++   +|||||..+|+|++....+|+.|||+++......++...+     .+|.+
T Consensus       796 ~~~L~~~dLl~~a~dvA~G~~YLe~~~---fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~  872 (1025)
T KOG1095|consen  796 PSNLSMRDLLAFALDVAKGMNYLESKH---FVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMP  872 (1025)
T ss_pred             CCCCCHHHHHHHHHHHhhhhHHHHhCC---CcCcchhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCC
Confidence            567999999999999999999999998   9999999999999999999999999999655555443333     34555


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhcc-------------------------ChHHHHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGLY-------------------------SFEYLKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~~-------------------------~~~~~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++....+.|+.++|||||||++||+++.                         +...++.+.++|.+||+.+|++||+|.
T Consensus       873 PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~ggRL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~  952 (1025)
T KOG1095|consen  873 PESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGGRLDPPSYCPEKLYQLMLQCWKHDPEDRPSFR  952 (1025)
T ss_pred             HHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCCccCCCCCCChHHHHHHHHHccCChhhCccHH
Confidence            6666689999999999999999998442                         222356789999999999999999999


Q ss_pred             HHHHHHHhhhhcC
Q 044320          136 EVARQLENISSML  148 (176)
Q Consensus       136 ~i~~~l~~~~~~~  148 (176)
                      .|++++..+....
T Consensus       953 ~i~~q~~~i~~~~  965 (1025)
T KOG1095|consen  953 TIVEQDPAISNAA  965 (1025)
T ss_pred             HHHhhhhhhhhhh
Confidence            9999999887764

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.94  E-value=5.1e-27  Score=182.21  Aligned_cols=137  Identities=20%  Similarity=0.206  Sum_probs=111.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC----ccccc-eee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING----VVGHV-SIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~----~~~~~-~~~   80 (176)
                      ..+++++++++++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++.........    ..+.. +.+
T Consensus       206 ~~~l~~~~~~~i~~qi~~aL~yLH~~g---iiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~a  282 (374)
T cd05106         206 SWPLDLDDLLRFSSQVAQGMDFLASKN---CIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMA  282 (374)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHCC---EEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeC
Confidence            346899999999999999999999999   9999999999999999999999999987644322111    11112 333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH-------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY-------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      ++......++.++||||||+++|+|.+ +..||                         +.++.+++.+||..+|++||++
T Consensus       283 PE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~  362 (374)
T cd05106         283 PESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMVKRGYQMSRPDFAPPEIYSIMKMCWNLEPTERPTF  362 (374)
T ss_pred             HHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHHHHcccCccCCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence            444446778999999999999999986 66554                         2357899999999999999999


Q ss_pred             HHHHHHHHhhh
Q 044320          135 LEVARQLENIS  145 (176)
Q Consensus       135 ~~i~~~l~~~~  145 (176)
                      .++++.|+++.
T Consensus       363 ~~l~~~l~~~~  373 (374)
T cd05106         363 SQISQLIQRQL  373 (374)
T ss_pred             HHHHHHHHHHh
Confidence            99999998753

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.94  E-value=1.3e-26  Score=164.72  Aligned_cols=140  Identities=25%  Similarity=0.339  Sum_probs=112.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----------Cc
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----------GV   73 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----------~~   73 (176)
                      ++.-+++.+++.++.+++.||+++|.. .+++.||||||.||++++.+..++.|||.+......-..           ..
T Consensus       120 kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e  198 (302)
T KOG2345|consen  120 KGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEE  198 (302)
T ss_pred             cCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHH
Confidence            345699999999999999999999998 678999999999999999999999999988654321110           11


Q ss_pred             cccceeeecCCC----CCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHh
Q 044320           74 VGHVSIVVKGTH----TQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALK  122 (176)
Q Consensus        74 ~~~~~~~~~~~~----~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~  122 (176)
                      .....+-+|++.    ....+.++|||||||++|.|+.+..||                           ++.+.++++.
T Consensus       199 ~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~q~s~P~~~~yse~l~~lik~  278 (302)
T KOG2345|consen  199 RCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQNAQISIPNSSRYSEALHQLIKS  278 (302)
T ss_pred             hCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeeccccccCCCCCccHHHHHHHHH
Confidence            122233344443    556788999999999999997666665                           4468999999


Q ss_pred             hcccCCCCCCCHHHHHHHHHhhh
Q 044320          123 YCEDETKARPSMLEVARQLENIS  145 (176)
Q Consensus       123 ~~~~~p~~Rp~~~~i~~~l~~~~  145 (176)
                      |++.||.+||++.+++..++.+.
T Consensus       279 mlqvdP~qRP~i~~ll~~~d~Li  301 (302)
T KOG2345|consen  279 MLQVDPNQRPTIPELLSKLDDLI  301 (302)
T ss_pred             HhcCCcccCCCHHHHHHHHHhhc
Confidence            99999999999999999998764

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.94  E-value=9.6e-27  Score=178.38  Aligned_cols=138  Identities=19%  Similarity=0.261  Sum_probs=112.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Ccccc-ceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGH-VSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~-~~~~   80 (176)
                      ...++++.+..++.|++.||+|||+.+   ++||||||.||+++.++.++|+|||++.........    ...+. .+.+
T Consensus       167 ~~~l~~~~~~~~~~qi~~aL~~lH~~~---ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~a  243 (337)
T cd05054         167 KEPLTLEDLISYSFQVARGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA  243 (337)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccC
Confidence            347999999999999999999999999   999999999999999999999999998765322211    11122 2344


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH-------------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL-------------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      ++......++.++|||||||++|++.+ +..||.                         .++.+++.+||+.+|++||++
T Consensus       244 PE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~  323 (337)
T cd05054         244 PESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPTF  323 (337)
T ss_pred             cHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHhccCCCCCCccCCHHHHHHHHHHccCChhhCcCH
Confidence            444557788999999999999999976 555541                         246889999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 044320          135 LEVARQLENISS  146 (176)
Q Consensus       135 ~~i~~~l~~~~~  146 (176)
                      .++++.|+++..
T Consensus       324 ~ell~~l~~~~~  335 (337)
T cd05054         324 SELVEILGDLLQ  335 (337)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.94  E-value=8.6e-27  Score=171.79  Aligned_cols=136  Identities=23%  Similarity=0.326  Sum_probs=108.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      ...+++..++.++.|++.||+|+|+++   ++|+||+|+||+++.++.++++|||+++..............+.+++...
T Consensus        96 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~  172 (256)
T cd05082          96 RSVLGGDCLLKFSLDVCEAMEYLEANN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALR  172 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---EeccccchheEEEcCCCcEEecCCccceeccccCCCCccceeecCHHHHc
Confidence            345899999999999999999999999   99999999999999999999999999876543322221111223333334


Q ss_pred             CCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320           86 TQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus        86 ~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                      ...++.++||||||+++|++.+ +..||                        +..+.+++.+||..+|++||++.++++.
T Consensus       173 ~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~  252 (256)
T cd05082         173 EKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLREQ  252 (256)
T ss_pred             cCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence            5678889999999999999986 54443                        2347899999999999999999999999


Q ss_pred             HHhh
Q 044320          141 LENI  144 (176)
Q Consensus       141 l~~~  144 (176)
                      |+.+
T Consensus       253 l~~~  256 (256)
T cd05082         253 LEHI  256 (256)
T ss_pred             HhcC
Confidence            8753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.94  E-value=2.3e-27  Score=186.13  Aligned_cols=134  Identities=23%  Similarity=0.385  Sum_probs=124.0

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-CCeEEeecCCcccCCCCCCCCccccceeeec
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEISRLAPVPNINGVVGHVSIVVK   82 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~   82 (176)
                      ++.+.++.+.+..+++||+.||.|||++ .|||||||||.+||++..+ |.|||+|+|++............|++.+++|
T Consensus       135 kk~~~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~aksvIGTPEFMAP  213 (632)
T KOG0584|consen  135 KKHRRVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHAKSVIGTPEFMAP  213 (632)
T ss_pred             HHhccCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhhccccceeccCccccCh
Confidence            4567789999999999999999999999 8999999999999999775 8999999999999988888888999999999


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhccChHHHH--------------------------HHHHHHHhhcccCCCCCCCHHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGLYSFEYLK--------------------------RFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~--------------------------~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +.....|+...||||||+.++||.++.+||.+                          +++++|.+|+.. ...||++.+
T Consensus       214 EmYEE~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~sa~e  292 (632)
T KOG0584|consen  214 EMYEENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDPEVREFIEKCLAT-KSERLSAKE  292 (632)
T ss_pred             HHHhhhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcC-chhccCHHH
Confidence            99999999999999999999999999999864                          489999999999 899999998


Q ss_pred             HHH
Q 044320          137 VAR  139 (176)
Q Consensus       137 i~~  139 (176)
                      ++.
T Consensus       293 LL~  295 (632)
T KOG0584|consen  293 LLK  295 (632)
T ss_pred             Hhh
Confidence            875

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.94  E-value=1.6e-26  Score=171.57  Aligned_cols=136  Identities=23%  Similarity=0.298  Sum_probs=109.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC----cccc-ceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING----VVGH-VSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~----~~~~-~~~~   80 (176)
                      ...+++..+..++.|++.||+|||..+   ++||||||+||+++.++.++++|||+++.........    ..+. .+.+
T Consensus       106 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~  182 (272)
T cd05075         106 PQYLPTQMLVKFMTDIASGMEYLSSKS---FIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIA  182 (272)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCC
Confidence            345899999999999999999999998   9999999999999999999999999987654332111    1111 2233


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++|+||||+++|++.+ +..||                        +..+.+++.+||..+|++||++.
T Consensus       183 pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  262 (272)
T cd05075         183 IESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGNRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFE  262 (272)
T ss_pred             HHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHH
Confidence            333446678899999999999999977 44443                        23588899999999999999999


Q ss_pred             HHHHHHHhh
Q 044320          136 EVARQLENI  144 (176)
Q Consensus       136 ~i~~~l~~~  144 (176)
                      ++++.|+++
T Consensus       263 ~l~~~l~~~  271 (272)
T cd05075         263 TLRCELEKA  271 (272)
T ss_pred             HHHHHHHhh
Confidence            999999864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.94  E-value=1.5e-26  Score=179.58  Aligned_cols=136  Identities=18%  Similarity=0.205  Sum_probs=109.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC----cccc-ceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING----VVGH-VSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~----~~~~-~~~~   80 (176)
                      ...+++++++.++.|++.||.|||+.+   ++||||||.||+++.++.++++|||+++.........    ..+. .+.+
T Consensus       208 ~~~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~a  284 (375)
T cd05104         208 ELALDTEDLLSFSYQVAKGMSFLASKN---CIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMA  284 (375)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeC
Confidence            346899999999999999999999999   9999999999999999999999999987654332111    1111 2334


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH-------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY-------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      ++......++.++|+||||+++|++.+ +..||                         +.++.+++.+||..+|++||++
T Consensus       285 PE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~  364 (375)
T cd05104         285 PESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKEGYRMLSPECAPSEMYDIMKSCWDADPLKRPTF  364 (375)
T ss_pred             hhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHhCccCCCCCCCCHHHHHHHHHHccCChhHCcCH
Confidence            444456778999999999999999876 44333                         2357899999999999999999


Q ss_pred             HHHHHHHHhh
Q 044320          135 LEVARQLENI  144 (176)
Q Consensus       135 ~~i~~~l~~~  144 (176)
                      .++++.|++.
T Consensus       365 ~eil~~l~~~  374 (375)
T cd05104         365 KQIVQLIEQQ  374 (375)
T ss_pred             HHHHHHHHhh
Confidence            9999999863

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.94  E-value=1.9e-27  Score=172.61  Aligned_cols=124  Identities=20%  Similarity=0.182  Sum_probs=108.0

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecC
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKG   83 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~   83 (176)
                      |+.++|++..++.+|.||+.||+|||+.+   +++|||||+|||+|++|.+|++|||+++..... .+...|++.+.+|+
T Consensus       136 rk~~rF~e~~arFYAAeivlAleylH~~~---iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r-T~TlCGTPeYLAPE  211 (355)
T KOG0616|consen  136 RKSGRFSEPHARFYAAEIVLALEYLHSLD---IIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR-TWTLCGTPEYLAPE  211 (355)
T ss_pred             HhcCCCCchhHHHHHHHHHHHHHHHHhcC---eeeccCChHHeeeccCCcEEEEeccceEEecCc-EEEecCCccccChH
Confidence            35678999999999999999999999999   999999999999999999999999999987766 44556777666555


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHHH-----------------------HHHHHHHhhcccCCCCC
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYLK-----------------------RFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~-----------------------~l~~l~~~~~~~~p~~R  131 (176)
                      . ....++.++|+||||+++|||+.|.+||..                       .+.+|+.+.++.|-.+|
T Consensus       212 ii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~iY~KI~~~~v~fP~~fs~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  212 IIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQIYEKILEGKVKFPSYFSSDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             HhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHHHHHHHHhCcccCCcccCHHHHHHHHHHHhhhhHhh
Confidence            4 588999999999999999999999888743                       47788888888888888

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.94  E-value=1.1e-26  Score=174.82  Aligned_cols=131  Identities=15%  Similarity=0.172  Sum_probs=107.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC---------CCCccccce
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN---------INGVVGHVS   78 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---------~~~~~~~~~   78 (176)
                      .+++..+..++.|++.||.|+|+.+   ++||||||+||+++.++.++++|||+++......         .....|...
T Consensus       122 ~~~~~~~~~i~~qi~~~l~~lH~~~---iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~  198 (294)
T PHA02882        122 CKNKKLIKNIMKDMLTTLEYIHEHG---ISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLY  198 (294)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCcc
Confidence            3578888999999999999999999   9999999999999999999999999987643211         111234555


Q ss_pred             eeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH-------------------------------HHHHHHHHhhccc
Q 044320           79 IVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------------KRFMSLALKYCED  126 (176)
Q Consensus        79 ~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------------~~l~~l~~~~~~~  126 (176)
                      +.+++. .+..++.++||||+||+++++.++..||.                               +.+.+++..|+..
T Consensus       199 y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (294)
T PHA02882        199 YAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEGKIKIKNANKFIYDFIECVTKL  278 (294)
T ss_pred             ccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHhhhhhhccCCCCHHHHHHHHHHHhC
Confidence            555544 36678999999999999999988877752                               1367899999999


Q ss_pred             CCCCCCCHHHHHHHH
Q 044320          127 ETKARPSMLEVARQL  141 (176)
Q Consensus       127 ~p~~Rp~~~~i~~~l  141 (176)
                      +|++||++.++.+.|
T Consensus       279 ~~~~rp~~~~l~~~~  293 (294)
T PHA02882        279 SYEEKPDYDALIKIF  293 (294)
T ss_pred             CCCCCCCHHHHHHhh
Confidence            999999999999876

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=7.5e-27  Score=180.06  Aligned_cols=136  Identities=19%  Similarity=0.251  Sum_probs=115.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-CCeEEeecCCcccCC-C-CCCCCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEISRLAP-V-PNINGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-~~~~l~dfg~~~~~~-~-~~~~~~~~~~~~~~~   82 (176)
                      +.++++.++..++.|++.|++|||++|   |+||||||+|++++.+ +.+|++|||++.... . .......|.+.|.+|
T Consensus       114 ~g~l~E~~ar~~F~Qlisav~y~H~~g---i~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aP  190 (370)
T KOG0583|consen  114 KGRLKEDEARKYFRQLISAVAYCHSRG---IVHRDLKPENILLDGNEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAP  190 (370)
T ss_pred             cCCCChHHHHHHHHHHHHHHHHHHhCC---EeeCCCCHHHEEecCCCCCEEEeccccccccCCCCCcccCCCCCcccCCH
Confidence            578999999999999999999999999   9999999999999999 999999999998873 2 334455677888877


Q ss_pred             CCCCC-C-C-CcccchhhHhHHHHHHhccChHHH------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           83 GTHTQ-Q-L-TEKSDIYGLGIACLYMGLYSFEYL------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        83 ~~~~~-~-~-~~~~Dv~s~G~~l~~l~~~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      +.... . | +.++||||+|++||-|++|..||.                        .++..++.+|+..+|..|+++.
T Consensus       191 Evl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~  270 (370)
T KOG0583|consen  191 EVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKGEFKIPSYLLSPEARSLIEKMLVPDPSTRITLL  270 (370)
T ss_pred             HHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcCCccCCCCcCCHHHHHHHHHHcCCCcccCCCHH
Confidence            77633 3 5 579999999999999988888763                        2458899999999999999999


Q ss_pred             HHHHHHHhhh
Q 044320          136 EVARQLENIS  145 (176)
Q Consensus       136 ~i~~~l~~~~  145 (176)
                      +|+ .-.-+.
T Consensus       271 ~i~-~h~w~~  279 (370)
T KOG0583|consen  271 EIL-EHPWFQ  279 (370)
T ss_pred             HHh-hChhhc
Confidence            998 433333

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.94  E-value=2.3e-27  Score=185.17  Aligned_cols=141  Identities=24%  Similarity=0.354  Sum_probs=119.7

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-Cccccceeeec
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-GVVGHVSIVVK   82 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~~   82 (176)
                      +.++.++.....++..+||.|+.|||.+.   |||||||+-||||..+-.+||+|||.++........ .+.|+..++++
T Consensus       204 ka~~~itp~llv~Wsk~IA~GM~YLH~hK---IIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkMSFaGTVaWMAP  280 (904)
T KOG4721|consen  204 KAGRPITPSLLVDWSKGIAGGMNYLHLHK---IIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKMSFAGTVAWMAP  280 (904)
T ss_pred             hccCccCHHHHHHHHHHhhhhhHHHHHhh---HhhhccCCCceEeeccceEEeccccchHhhhhhhhhhhhhhhHhhhCH
Confidence            34677888899999999999999999998   999999999999999999999999999887655432 34566655554


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      + +.....+.+.|||||||+||||+++..||.                         +-+.-|+++||+..|..||+|.+
T Consensus       281 EvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVGsNsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrq  360 (904)
T KOG4721|consen  281 EVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQ  360 (904)
T ss_pred             HHhhcCCcccccceehhHHHHHHHHhcCCCccccchheeEEeccCCcccccCcccCchHHHHHHHHHHhcCCCCCccHHH
Confidence            4 457888999999999999999999888874                         34788999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 044320          137 VARQLENISSM  147 (176)
Q Consensus       137 i~~~l~~~~~~  147 (176)
                      |+..|+-....
T Consensus       361 il~HldIa~pe  371 (904)
T KOG4721|consen  361 ILLHLDIASPE  371 (904)
T ss_pred             HHHHHhhcCHH
Confidence            99999865543

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.94  E-value=1.8e-26  Score=170.71  Aligned_cols=136  Identities=22%  Similarity=0.303  Sum_probs=110.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC---ccccc-eeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING---VVGHV-SIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~---~~~~~-~~~~   81 (176)
                      ...+++..++.++.|++.||+|+|+.+   ++|+||+|+||+++.++.++++|||.+..........   ..... +.++
T Consensus        98 ~~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aP  174 (263)
T cd05052          98 RQEVNAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP  174 (263)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---EeecccCcceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccCCH
Confidence            456899999999999999999999999   9999999999999999999999999987654332211   11112 2333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++||||||+++|++.+ +..++                        +..+.+++.+||..+|.+||++.+
T Consensus       175 E~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~  254 (263)
T cd05052         175 ESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKGYRMERPEGCPPKVYELMRACWQWNPSDRPSFAE  254 (263)
T ss_pred             HHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHH
Confidence            33446778899999999999999987 55443                        135888999999999999999999


Q ss_pred             HHHHHHhh
Q 044320          137 VARQLENI  144 (176)
Q Consensus       137 i~~~l~~~  144 (176)
                      +++.|+.+
T Consensus       255 l~~~l~~~  262 (263)
T cd05052         255 IHQAFETM  262 (263)
T ss_pred             HHHHHHhh
Confidence            99999865

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.94  E-value=6.1e-27  Score=178.97  Aligned_cols=132  Identities=18%  Similarity=0.193  Sum_probs=107.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----CCccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----NGVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~   80 (176)
                      ...+++..+..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++.......     ....+...+.
T Consensus        97 ~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~  173 (338)
T cd07859          97 NDDLTPEHHQFFLYQLLRALKYIHTAN---VFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYR  173 (338)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcC
Confidence            346899999999999999999999999   99999999999999999999999999875432211     1223445555


Q ss_pred             ecCCC---CCCCCcccchhhHhHHHHHHhccChHHH--------------------------------------------
Q 044320           81 VKGTH---TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------------------------  113 (176)
Q Consensus        81 ~~~~~---~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------------------------  113 (176)
                      +|+..   ...++.++|||||||++|+|.++..+|.                                            
T Consensus       174 aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  253 (338)
T cd07859         174 APELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPV  253 (338)
T ss_pred             CHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCC
Confidence            55543   2577889999999999999998876551                                            


Q ss_pred             ----------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 ----------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 ----------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                ..+.+++.+||..+|++||++.++++.
T Consensus       254 ~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~h  290 (338)
T cd07859         254 PFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALAD  290 (338)
T ss_pred             chHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence                      124689999999999999999999864

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.94  E-value=2.4e-26  Score=171.70  Aligned_cols=140  Identities=19%  Similarity=0.279  Sum_probs=112.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccc-eee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHV-SIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~-~~~   80 (176)
                      ...+++..+..++.|++.||.|+|+.+   ++|+||||+||+++.++.++++|||.++.......    ....+.. +.+
T Consensus       103 ~~~~~~~~~~~i~~qi~~~l~~lH~~~---iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~  179 (279)
T cd05111         103 RDSLDPQRLLNWCVQIAKGMYYLEEHR---MVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMA  179 (279)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHCC---EeccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccC
Confidence            456899999999999999999999999   99999999999999999999999999875432211    1112222 333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++||||||+++||+.+ +..||.                        ..+..++.+||..+|.+||++.
T Consensus       180 pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~  259 (279)
T cd05111         180 LESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENVRPTFK  259 (279)
T ss_pred             HHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHH
Confidence            444446778999999999999999986 555441                        1366789999999999999999


Q ss_pred             HHHHHHHhhhhcC
Q 044320          136 EVARQLENISSML  148 (176)
Q Consensus       136 ~i~~~l~~~~~~~  148 (176)
                      ++++.|..+....
T Consensus       260 el~~~l~~~~~~~  272 (279)
T cd05111         260 ELANEFTRMARDP  272 (279)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999877643

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=5.8e-27  Score=182.07  Aligned_cols=131  Identities=23%  Similarity=0.272  Sum_probs=114.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~~   84 (176)
                      ..+++.++..|.++++.||+|||.++   |+|||||.+|||++.+|.+|++|||++.......  .....|++||++++.
T Consensus       364 ~~~~E~qIA~Icre~l~aL~fLH~~g---IiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEV  440 (550)
T KOG0578|consen  364 TRMTEGQIAAICREILQGLKFLHARG---IIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEV  440 (550)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhcc---eeeeccccceeEeccCCcEEEeeeeeeeccccccCccccccCCCCccchhh
Confidence            34889999999999999999999999   9999999999999999999999999987655433  344567777776665


Q ss_pred             C-CCCCCcccchhhHhHHHHHHhccChHHHH--------------------------HHHHHHHhhcccCCCCCCCHHHH
Q 044320           85 H-TQQLTEKSDIYGLGIACLYMGLYSFEYLK--------------------------RFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        85 ~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~--------------------------~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      . ...|+++.||||||++.+||..|.+||..                          .+++++.+||..|+++|+++.++
T Consensus       441 vtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eL  520 (550)
T KOG0578|consen  441 VTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKEL  520 (550)
T ss_pred             hhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHH
Confidence            4 67899999999999999999999998852                          48999999999999999999999


Q ss_pred             HHH
Q 044320          138 ARQ  140 (176)
Q Consensus       138 ~~~  140 (176)
                      ++.
T Consensus       521 L~H  523 (550)
T KOG0578|consen  521 LEH  523 (550)
T ss_pred             hcC
Confidence            864

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.94  E-value=1.9e-26  Score=172.04  Aligned_cols=139  Identities=19%  Similarity=0.309  Sum_probs=111.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Ccccc-ceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGH-VSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~-~~~~   80 (176)
                      ...+++.+++.++.|++.||+|+|+.+   ++||||||+||+++.++.++++|||+++........    ...+. .+.+
T Consensus       103 ~~~~~~~~~~~~~~qi~~~L~~lH~~~---iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~  179 (279)
T cd05109         103 KDRIGSQDLLNWCVQIAKGMSYLEEVR---LVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMA  179 (279)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCC
Confidence            456899999999999999999999999   999999999999999999999999998765432211    11111 2333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++||||||+++||+.+ +..||                        +..+.+++.+||..+|+.||++.
T Consensus       180 PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~  259 (279)
T cd05109         180 LESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERLPQPPICTIDVYMIMVKCWMIDSECRPRFR  259 (279)
T ss_pred             HHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcCCCCccCCHHHHHHHHHHcCCChhhCcCHH
Confidence            444456778899999999999999876 44443                        13467899999999999999999


Q ss_pred             HHHHHHHhhhhc
Q 044320          136 EVARQLENISSM  147 (176)
Q Consensus       136 ~i~~~l~~~~~~  147 (176)
                      ++++.|.++...
T Consensus       260 ~l~~~l~~~~~~  271 (279)
T cd05109         260 ELVDEFSRMARD  271 (279)
T ss_pred             HHHHHHHHhhcC
Confidence            999999877654

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.94  E-value=2.8e-26  Score=172.16  Aligned_cols=138  Identities=20%  Similarity=0.311  Sum_probs=113.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~~   82 (176)
                      ..+++..++.++.|++.||+|+|+++   ++|+||||+||+++.++.++++|||++........    ....+...+.+|
T Consensus       118 ~~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aP  194 (291)
T cd05094         118 GELGLSQMLHIASQIASGMVYLASQH---FVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPP  194 (291)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecCh
Confidence            45899999999999999999999999   99999999999999999999999999875443221    112223334444


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      + .....++.++|+||||+++|++.+ +..||                        +..+.+++.+||..+|.+||++.+
T Consensus       195 E~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~  274 (291)
T cd05094         195 ESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRVCPKEVYDIMLGCWQREPQQRLNIKE  274 (291)
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhCCCCCCCCccCCHHHHHHHHHHcccChhhCcCHHH
Confidence            4 446778889999999999999987 66664                        235889999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 044320          137 VARQLENISSM  147 (176)
Q Consensus       137 i~~~l~~~~~~  147 (176)
                      +++.|+.+...
T Consensus       275 v~~~l~~~~~~  285 (291)
T cd05094         275 IYKILHALGKA  285 (291)
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.94  E-value=8.7e-27  Score=174.64  Aligned_cols=131  Identities=19%  Similarity=0.183  Sum_probs=106.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~~   84 (176)
                      ...+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++++|||++........ ....+...+.+|+.
T Consensus       104 ~~~~~~~~~~~i~~qi~~aL~~lH~~~---iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~  180 (290)
T cd07862         104 EPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEV  180 (290)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEEcCCCCEEEccccceEeccCCcccccccccccccChHH
Confidence            455899999999999999999999999   99999999999999999999999999876543321 12234444444443


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------------------------------
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------------------------------  113 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------------------------------  113 (176)
                       ....++.++|||||||++|++.++..+|.                                                  
T Consensus       181 ~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (290)
T cd07862         181 LLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDID  260 (290)
T ss_pred             HhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCC
Confidence             46678899999999999999987765541                                                  


Q ss_pred             HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      ..+.+++.+|++.+|++||++.++++
T Consensus       261 ~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         261 ELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             HHHHHHHHHHhccCchhcCCHHHHhc
Confidence            13468999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.94  E-value=2e-26  Score=172.01  Aligned_cols=134  Identities=24%  Similarity=0.321  Sum_probs=108.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~~   82 (176)
                      ..+++.+++.++.|++.||.|||+.+   ++|+||||+||+++.++.++++|||+++........    ...+...+.+|
T Consensus       119 ~~l~~~~~~~~~~~l~~al~~lH~~~---i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (283)
T cd05048         119 SSLDCSDFLHIAIQIAAGMEYLSSHH---FVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPP  195 (283)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCH
Confidence            56899999999999999999999999   999999999999999999999999998754332211    11122233333


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      + .....++.++|+|||||++||+.+ +..||                        +.++.+++.+||..+|.+||++.+
T Consensus       196 E~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~  275 (283)
T cd05048         196 EAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMIRSRQLLPCPEDCPARVYALMIECWNEIPARRPRFKD  275 (283)
T ss_pred             HHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCcccCCHHHHHHHHHHccCChhhCcCHHH
Confidence            3 446778899999999999999976 54443                        246889999999999999999999


Q ss_pred             HHHHHHh
Q 044320          137 VARQLEN  143 (176)
Q Consensus       137 i~~~l~~  143 (176)
                      +++.|+.
T Consensus       276 i~~~l~~  282 (283)
T cd05048         276 IHTRLRS  282 (283)
T ss_pred             HHHHHhc
Confidence            9999975

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.94  E-value=3.6e-26  Score=172.09  Aligned_cols=139  Identities=22%  Similarity=0.308  Sum_probs=111.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--CccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~~~   84 (176)
                      ..+++.+++.++.|++.||+|||+.+   ++|+||||+||+++.++.++++|||++.........  ......+.+++..
T Consensus       114 ~~l~~~~~~~i~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~  190 (297)
T cd05089         114 STLTSQQLLQFASDVATGMQYLSEKQ---FIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESL  190 (297)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCcCCcceEEECCCCeEEECCcCCCccccceeccCCCCcCccccCchhh
Confidence            45899999999999999999999999   999999999999999999999999998643221111  1111123334444


Q ss_pred             CCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      ....++.++||||||+++|+|.+ +..||                        +..+.+++.+||..+|.+||+++++++
T Consensus       191 ~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  270 (297)
T cd05089         191 NYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISV  270 (297)
T ss_pred             ccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            46678899999999999999986 55443                        235789999999999999999999999


Q ss_pred             HHHhhhhcC
Q 044320          140 QLENISSML  148 (176)
Q Consensus       140 ~l~~~~~~~  148 (176)
                      .|..+....
T Consensus       271 ~l~~~~~~~  279 (297)
T cd05089         271 QLSRMLEAR  279 (297)
T ss_pred             HHHHHHHhh
Confidence            999888754

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.94  E-value=1.6e-26  Score=174.47  Aligned_cols=133  Identities=23%  Similarity=0.359  Sum_probs=105.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC----ccccc-eeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING----VVGHV-SIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~----~~~~~-~~~~   81 (176)
                      ..+++.+++.++.|++.||.|||+.+   ++||||||+||+++.++.++++|||+++.........    ..+.. +.++
T Consensus       133 ~~~~~~~~~~i~~~i~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aP  209 (304)
T cd05096         133 PAISYSSLLHVALQIASGMKYLSSLN---FVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAW  209 (304)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHCC---ccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCH
Confidence            45888999999999999999999999   9999999999999999999999999987643322111    11122 3333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc--cChHH-------------------------------HHHHHHHHHhhcccCC
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL--YSFEY-------------------------------LKRFMSLALKYCEDET  128 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~--~~~~~-------------------------------~~~l~~l~~~~~~~~p  128 (176)
                      +......++.++||||||+++|++.+  +..||                               +..+.+++.+||..+|
T Consensus       210 E~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p  289 (304)
T cd05096         210 ECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTDEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDC  289 (304)
T ss_pred             HHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCc
Confidence            33346678999999999999999854  22221                               2457899999999999


Q ss_pred             CCCCCHHHHHHHHH
Q 044320          129 KARPSMLEVARQLE  142 (176)
Q Consensus       129 ~~Rp~~~~i~~~l~  142 (176)
                      ++||++.++.+.|+
T Consensus       290 ~~RPs~~~i~~~l~  303 (304)
T cd05096         290 RERPSFSDIHAFLT  303 (304)
T ss_pred             hhCcCHHHHHHHHh
Confidence            99999999988876

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.94  E-value=3.2e-26  Score=168.89  Aligned_cols=135  Identities=19%  Similarity=0.183  Sum_probs=109.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Cccc-cceee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVG-HVSIV   80 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~-~~~~~   80 (176)
                      ..++++.+..++.|++.||+|+|+++   ++|+||||.||+++.++.++++|||+++........     ...+ ..+.+
T Consensus        90 ~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  166 (257)
T cd05116          90 KHVTEKNITELVHQVSMGMKYLEETN---FVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYA  166 (257)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccC
Confidence            46899999999999999999999999   999999999999999999999999998765433211     1111 12333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++|+||||+++||+.+ +..||                        +.++.+++.+||+.+|+.||++.
T Consensus       167 PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~  246 (257)
T cd05116         167 PECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESGERMECPQRCPPEMYDLMKLCWTYGVDERPGFA  246 (257)
T ss_pred             HhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHhccCchhCcCHH
Confidence            333345667889999999999999986 66554                        23588999999999999999999


Q ss_pred             HHHHHHHhh
Q 044320          136 EVARQLENI  144 (176)
Q Consensus       136 ~i~~~l~~~  144 (176)
                      +|.+.|++.
T Consensus       247 ~i~~~l~~~  255 (257)
T cd05116         247 VVELRLRNY  255 (257)
T ss_pred             HHHHHHhcc
Confidence            999999864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.94  E-value=4e-26  Score=168.60  Aligned_cols=136  Identities=16%  Similarity=0.231  Sum_probs=109.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Cc--c-cccee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GV--V-GHVSI   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~--~-~~~~~   79 (176)
                      +..+++.+++.++.|++.||.|+|+++   ++|+||||+||+++.++.++++|||++.........   ..  . ...+.
T Consensus        89 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~  165 (257)
T cd05115          89 KDEITVSNVVELMHQVSMGMKYLEGKN---FVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWY  165 (257)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhcC---eeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccC
Confidence            457899999999999999999999999   999999999999999999999999998754332211   11  1 12233


Q ss_pred             eecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           80 VVKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        80 ~~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +++......++.++|+||||+++|++.+ +..||                        +..+.+++.+||..+|++||++
T Consensus       166 aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~  245 (257)
T cd05115         166 APECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQGKRLDCPAECPPEMYALMKDCWIYKWEDRPNF  245 (257)
T ss_pred             CHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence            3443445678889999999999999885 66554                        2457889999999999999999


Q ss_pred             HHHHHHHHhh
Q 044320          135 LEVARQLENI  144 (176)
Q Consensus       135 ~~i~~~l~~~  144 (176)
                      .++.+.|+.+
T Consensus       246 ~~i~~~l~~~  255 (257)
T cd05115         246 AKVEERMRTY  255 (257)
T ss_pred             HHHHHHHhhh
Confidence            9999999864

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.94  E-value=3.4e-26  Score=173.69  Aligned_cols=140  Identities=18%  Similarity=0.272  Sum_probs=112.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Ccccc-ceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGH-VSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~-~~~~   80 (176)
                      ...+++..++.++.|++.||+|||+.+   ++||||||+||+++.++.++++|||+++........    ..... .+.+
T Consensus       103 ~~~~~~~~~~~~~~qi~~~L~~LH~~~---iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~a  179 (316)
T cd05108         103 KDNIGSQYLLNWCVQIAKGMNYLEERR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMA  179 (316)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhcC---eeccccchhheEecCCCcEEEccccccccccCCCcceeccCCccceeecC
Confidence            346889999999999999999999999   999999999999999999999999999865432211    11111 2333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++|+||||+++||+.+ +..||.                        ..+.+++.+||..+|.+||++.
T Consensus       180 pE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~  259 (316)
T cd05108         180 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFR  259 (316)
T ss_pred             hHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHH
Confidence            444456778899999999999999876 544431                        2478899999999999999999


Q ss_pred             HHHHHHHhhhhcC
Q 044320          136 EVARQLENISSML  148 (176)
Q Consensus       136 ~i~~~l~~~~~~~  148 (176)
                      +++..+..+....
T Consensus       260 ~l~~~l~~~~~~~  272 (316)
T cd05108         260 ELIIEFSKMARDP  272 (316)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999887653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.94  E-value=2.3e-26  Score=172.10  Aligned_cols=131  Identities=18%  Similarity=0.166  Sum_probs=105.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKG-   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~-   83 (176)
                      ...+++.++..++.|++.||.|+|+.+   ++||||||+||+++.++.++++|||++........ ....+...+.+|+ 
T Consensus       102 ~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~  178 (288)
T cd07863         102 PPGLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGQVKLADFGLARIYSCQMALTPVVVTLWYRAPEV  178 (288)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEECccCccccccCcccCCCccccccccCchH
Confidence            345899999999999999999999999   99999999999999999999999999876543322 1222333344444 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHH--------------------------------------------------H
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------------------------------L  113 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------------------------------~  113 (176)
                      ..+..++.++|+||+||++|+|.++..+|                                                  .
T Consensus       179 ~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (288)
T cd07863         179 LLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIE  258 (288)
T ss_pred             hhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcC
Confidence            44667899999999999999998766543                                                  2


Q ss_pred             HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      +.+.+++.+|+..||++||++.+++.
T Consensus       259 ~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         259 ESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             HHHHHHHHHHhccCcccCCCHHHHhc
Confidence            23578999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.94  E-value=4.5e-26  Score=169.03  Aligned_cols=136  Identities=24%  Similarity=0.352  Sum_probs=110.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC----cc-ccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING----VV-GHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~----~~-~~~~~~   80 (176)
                      ...+++..+..++.|++.||.|+|+.+   ++|+||||+||+++.++.++++|||+++.........    .. ...+.+
T Consensus       107 ~~~~~~~~~~~~~~~i~~aL~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  183 (273)
T cd05035         107 PEKLPLQTLLKFMVDIALGMEYLSNRN---FIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIA  183 (273)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhCC---eeccccchheEEECCCCeEEECCccceeeccccccccccccccCCccccC
Confidence            346899999999999999999999998   9999999999999999999999999987654332111    11 112333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++||||||+++||+.+ +..||                        +..+.+++.+||..+|.+||++.
T Consensus       184 pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~  263 (273)
T cd05035         184 IESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHGNRLKQPEDCLDELYDLMYSCWRADPKDRPTFT  263 (273)
T ss_pred             HhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCcCCCHHHHHHHHHHcCCChhhCcCHH
Confidence            444446678899999999999999987 54443                        24678999999999999999999


Q ss_pred             HHHHHHHhh
Q 044320          136 EVARQLENI  144 (176)
Q Consensus       136 ~i~~~l~~~  144 (176)
                      ++++.|+++
T Consensus       264 e~~~~l~~~  272 (273)
T cd05035         264 KLREVLENI  272 (273)
T ss_pred             HHHHHHHhh
Confidence            999999875

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=2.7e-26  Score=179.05  Aligned_cols=131  Identities=22%  Similarity=0.242  Sum_probs=105.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC---CCCCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP---NINGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~---~~~~~~~~~~~~~~   82 (176)
                      +..+++.+++.++.|++.||.|+|+++   |+||||||+||+++.++.++|+|||++......   ......|+..+.+|
T Consensus       176 ~~~l~~~~~~~i~~qi~~aL~ylH~~~---IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aP  252 (391)
T PHA03212        176 KRNIAICDILAIERSVLRAIQYLHENR---IIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAP  252 (391)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHhEEEcCCCCEEEEeCCcccccccccccccccccCccCCCCh
Confidence            456899999999999999999999999   999999999999999999999999998653221   12223345555444


Q ss_pred             CC-CCCCCCcccchhhHhHHHHHHhccChHH-------------------------------------------------
Q 044320           83 GT-HTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------------  112 (176)
Q Consensus        83 ~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------------  112 (176)
                      +. ....++.++||||+||++|++.++..++                                                 
T Consensus       253 E~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  332 (391)
T PHA03212        253 ELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKS  332 (391)
T ss_pred             hhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhcc
Confidence            44 3667899999999999999998764221                                                 


Q ss_pred             ----------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ----------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ----------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                      +.++.+++.+|+..+|++|||+.++++
T Consensus       333 ~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~  375 (391)
T PHA03212        333 SRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLD  375 (391)
T ss_pred             CCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhc
Confidence                            124677899999999999999999875

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.94  E-value=2.6e-26  Score=171.47  Aligned_cols=135  Identities=18%  Similarity=0.248  Sum_probs=107.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccc-eee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHV-SIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~-~~~   80 (176)
                      +..+++..+..++.|++.||.|+|+.+   ++||||||.||+++.++.++++|||+++........    ...+.. +.+
T Consensus       118 ~~~~~~~~~~~~~~ql~~aL~~lH~~g---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a  194 (283)
T cd05091         118 KSTLEPADFVHIVTQIAAGMEFLSSHH---VVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMS  194 (283)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHcC---ccccccchhheEecCCCceEecccccccccccchheeeccCccCCccccC
Confidence            345899999999999999999999999   999999999999999999999999998765432211    111122 333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++||||+|+++||+.+ +..++                        +..+.+++..||+.+|++||++.
T Consensus       195 PE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~  274 (283)
T cd05091         195 PEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMIRNRQVLPCPDDCPAWVYTLMLECWNEFPSRRPRFK  274 (283)
T ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhCCCcccCCCHH
Confidence            333446678899999999999999976 43332                        23478999999999999999999


Q ss_pred             HHHHHHHh
Q 044320          136 EVARQLEN  143 (176)
Q Consensus       136 ~i~~~l~~  143 (176)
                      +|+..|+.
T Consensus       275 ~i~~~l~~  282 (283)
T cd05091         275 DIHSRLRT  282 (283)
T ss_pred             HHHHHhhC
Confidence            99999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.6e-26  Score=177.70  Aligned_cols=134  Identities=18%  Similarity=0.147  Sum_probs=112.0

Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC---CCCcccccee
Q 044320            3 SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN---INGVVGHVSI   79 (176)
Q Consensus         3 ~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~   79 (176)
                      ....-.|++.++.-|+.|++.||+|||.+|   |+|||||.+|||++.+|.+||+|||+++.+....   .+...-+.||
T Consensus       209 ~~p~vkft~~qIKc~mkQLl~Gl~~cH~~g---vlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWY  285 (560)
T KOG0600|consen  209 SSPGVKFTEPQIKCYMKQLLEGLEYCHSRG---VLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLWY  285 (560)
T ss_pred             cCCCcccChHHHHHHHHHHHHHHHHHhhcC---eeeccccccceEEcCCCCEEeccccceeeccCCCCcccccceEEeec
Confidence            345668999999999999999999999999   9999999999999999999999999999766544   3334455677


Q ss_pred             eecCCC--CCCCCcccchhhHhHHHHHHhccChHHH--------------------------------------------
Q 044320           80 VVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------------------------  113 (176)
Q Consensus        80 ~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------------------------  113 (176)
                      -+|++.  ...|+.+.|+||.||++.||..+.+.++                                            
T Consensus       286 RpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l  365 (560)
T KOG0600|consen  286 RPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRL  365 (560)
T ss_pred             cChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcccchH
Confidence            777765  6789999999999999999966555432                                            


Q ss_pred             --------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 --------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 --------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                              ....+|+..+|..||.+|.|+.++++
T Consensus       366 ~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  366 RETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             HHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence                    12567889999999999999987764

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.93  E-value=7.3e-26  Score=169.15  Aligned_cols=136  Identities=24%  Similarity=0.318  Sum_probs=109.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----CCccccc-eee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----NGVVGHV-SIV   80 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~-~~~   80 (176)
                      ..+++.+++.++.|++.||.|||+.+   ++|+||||+||+++.++.++++|||+++.......     ....+.. +.+
T Consensus       102 ~~l~~~~~~~i~~~l~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (283)
T cd05080         102 HKLNLAQLLLFAQQICEGMAYLHSQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYA  178 (283)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeC
Confidence            35899999999999999999999999   99999999999999999999999999876543221     0111122 333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhccChHH---------------------------------------HHHHHHHHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------LKRFMSLAL  121 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------~~~l~~l~~  121 (176)
                      ++......++.++|+||||+++|++.++..|+                                       +..+.+++.
T Consensus       179 PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  258 (283)
T cd05080         179 VECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMK  258 (283)
T ss_pred             HhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHHHHHHHH
Confidence            33344567889999999999999998864332                                       246789999


Q ss_pred             hhcccCCCCCCCHHHHHHHHHhhh
Q 044320          122 KYCEDETKARPSMLEVARQLENIS  145 (176)
Q Consensus       122 ~~~~~~p~~Rp~~~~i~~~l~~~~  145 (176)
                      +||+.+|.+||++.++++.|+.+.
T Consensus       259 ~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         259 NCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             HHhccChhhCCCHHHHHHHHHHhh
Confidence            999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.93  E-value=1.8e-26  Score=165.28  Aligned_cols=135  Identities=21%  Similarity=0.162  Sum_probs=113.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCc--cccceeee
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV--VGHVSIVV   81 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~--~~~~~~~~   81 (176)
                      .+...|+..++..++.++..||+|||++.   |+|||+||.|+|++.+|.+|++|||+++....+.....  .-+.||-+
T Consensus        93 d~~i~l~pa~iK~y~~m~LkGl~y~H~~~---IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRA  169 (318)
T KOG0659|consen   93 DKNIILSPADIKSYMLMTLKGLAYCHSKW---ILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRA  169 (318)
T ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHhhh---hhcccCCccceEEcCCCcEEeecccchhccCCCCcccccceeeeeccC
Confidence            34566899999999999999999999998   99999999999999999999999999999876654433  45677777


Q ss_pred             cCCC--CCCCCcccchhhHhHHHHHHhccChHHH----------------------------------------------
Q 044320           82 KGTH--TQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------------------------  113 (176)
Q Consensus        82 ~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------------------------  113 (176)
                      |++.  ...|+...||||.||++.|++.+.+-|+                                              
T Consensus       170 PELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~l  249 (318)
T KOG0659|consen  170 PELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNL  249 (318)
T ss_pred             hHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCccccc
Confidence            7765  6789999999999999999844433221                                              


Q ss_pred             -----HHHHHHHHhhcccCCCCCCCHHHHHHHH
Q 044320          114 -----KRFMSLALKYCEDETKARPSMLEVARQL  141 (176)
Q Consensus       114 -----~~l~~l~~~~~~~~p~~Rp~~~~i~~~l  141 (176)
                           +...+++.+++..+|.+|++++++++.=
T Consensus       250 f~aas~d~ldLl~~m~~ynP~~Rita~qaL~~~  282 (318)
T KOG0659|consen  250 FPAASSDALDLLSKMLTYNPKKRITASQALKHP  282 (318)
T ss_pred             cccccHHHHHHHHhhhccCchhcccHHHHhcch
Confidence                 2367899999999999999999887753

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.93  E-value=7.1e-26  Score=169.78  Aligned_cols=138  Identities=22%  Similarity=0.315  Sum_probs=111.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccc-eeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHV-SIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~-~~~~   81 (176)
                      ..+++.+++.++.|++.||+|+|+.+   ++||||||+||+++.++.++++|||.++........    ...+.. +.+|
T Consensus       115 ~~l~~~~~~~~~~ql~~aL~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  191 (288)
T cd05093         115 AELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPP  191 (288)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCH
Confidence            45999999999999999999999999   999999999999999999999999998754322211    111122 3333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||+++|+|.+ +..||                        +..+.+++.+||+.+|.+||++.+
T Consensus       192 E~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~  271 (288)
T cd05093         192 ESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRTCPKEVYDLMLGCWQREPHMRLNIKE  271 (288)
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHH
Confidence            33446678899999999999999987 55543                        235889999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 044320          137 VARQLENISSM  147 (176)
Q Consensus       137 i~~~l~~~~~~  147 (176)
                      +.+.|+++...
T Consensus       272 v~~~l~~~~~~  282 (288)
T cd05093         272 IHSLLQNLAKA  282 (288)
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.93  E-value=3.5e-26  Score=171.60  Aligned_cols=138  Identities=17%  Similarity=0.239  Sum_probs=110.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~   80 (176)
                      ....+++..++.++.|++.||+|||+.+   ++|+||+|.||+++.++.++++|||+++........    ...+...+.
T Consensus       125 ~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~  201 (293)
T cd05053         125 PEETLTQKDLVSFAYQVARGMEFLASKK---CIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWM  201 (293)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHCC---ccccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCcccc
Confidence            3467999999999999999999999998   999999999999999999999999998765432211    111112233


Q ss_pred             ecC-CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKG-THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +|+ .....++.++|||||||++|++.+ +..+|                        +..+.+++.+||..+|++||++
T Consensus       202 aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  281 (293)
T cd05053         202 APEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTF  281 (293)
T ss_pred             CHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCH
Confidence            333 456778899999999999999875 44432                        2358899999999999999999


Q ss_pred             HHHHHHHHhhh
Q 044320          135 LEVARQLENIS  145 (176)
Q Consensus       135 ~~i~~~l~~~~  145 (176)
                      .++++.|+.+.
T Consensus       282 ~eil~~l~~~~  292 (293)
T cd05053         282 KQLVEDLDRML  292 (293)
T ss_pred             HHHHHHHHHhh
Confidence            99999999765

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.93  E-value=5e-26  Score=173.95  Aligned_cols=133  Identities=19%  Similarity=0.311  Sum_probs=108.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcC-CCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTE-ADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKG-   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~-~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~-   83 (176)
                      ...+++..+..++.|++.||.|||+. +   ++|+||||+||+++.++.++++|||++............+...+.+|+ 
T Consensus        97 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~g~~~y~aPE~  173 (331)
T cd06649          97 AKRIPEEILGKVSIAVLRGLAYLREKHQ---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPER  173 (331)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhhcCC---EEcCCCChhhEEEcCCCcEEEccCcccccccccccccCCCCcCcCCHhH
Confidence            34689999999999999999999974 6   999999999999999999999999998765443333333444444444 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHH---------------------------------------------------
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------------------  112 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------------------  112 (176)
                      ..+..++.++|+|||||++|++.++..||                                                   
T Consensus       174 ~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (331)
T cd06649         174 LQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAI  253 (331)
T ss_pred             hcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccccCCccccCcccccccccccccccccccchhH
Confidence            34667899999999999999998876554                                                   


Q ss_pred             --------------------HHHHHHHHHhhcccCCCCCCCHHHHHHHH
Q 044320          113 --------------------LKRFMSLALKYCEDETKARPSMLEVARQL  141 (176)
Q Consensus       113 --------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l  141 (176)
                                          ..++.+++.+||..+|++||++.++++.-
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~  302 (331)
T cd06649         254 FELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHT  302 (331)
T ss_pred             HHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcCh
Confidence                                23567899999999999999999998764

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00284 protein kinase; Provisional

Probab=99.93  E-value=3.2e-26  Score=182.37  Aligned_cols=130  Identities=13%  Similarity=0.121  Sum_probs=104.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCC----------------CeEEeecCCcccCCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKF----------------TPKVFDFEISRLAPVP   68 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~----------------~~~l~dfg~~~~~~~~   68 (176)
                      ...+++.++..++.|++.||.|||+ .+   |+||||||+||+++.++                .+||+|||.+......
T Consensus       225 ~~~l~~~~~~~i~~qi~~aL~yLH~~~g---IiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~  301 (467)
T PTZ00284        225 HGPFSHRHLAQIIFQTGVALDYFHTELH---LMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHS  301 (467)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhcCC---eecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCccc
Confidence            3569999999999999999999997 48   99999999999998765                4899999987543322


Q ss_pred             CCCCccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH----------------------------------
Q 044320           69 NINGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------------  113 (176)
Q Consensus        69 ~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------------  113 (176)
                      . ....+...|.+|+. .+..++.++|||||||++|||+++..+|.                                  
T Consensus       302 ~-~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~  380 (467)
T PTZ00284        302 R-TAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLL  380 (467)
T ss_pred             c-ccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHH
Confidence            2 22344455555544 46778999999999999999988877651                                  


Q ss_pred             -------------------------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 -------------------------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 -------------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                                     ..+.+++.+||..||++||++.++++
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~  437 (467)
T PTZ00284        381 YNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTT  437 (467)
T ss_pred             hhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhc
Confidence                                           11457899999999999999999986

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=9.4e-26  Score=166.67  Aligned_cols=135  Identities=23%  Similarity=0.370  Sum_probs=109.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCcccc---cee-ee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGH---VSI-VV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~---~~~-~~   81 (176)
                      ...+++.++..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++............+.   ..+ ++
T Consensus        97 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aP  173 (261)
T cd05068          97 GRALKLPQLIDMAAQVASGMAYLEAQN---YIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAP  173 (261)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCCcceEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccCc
Confidence            356899999999999999999999999   99999999999999999999999999876553322222221   123 33


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||+++|++.+ +..||                        +..+.+++.+|++.+|.+||++.+
T Consensus       174 E~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~  253 (261)
T cd05068         174 EAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGYRMPCPPGCPKELYDIMLDCWKEDPDDRPTFET  253 (261)
T ss_pred             cccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHhhcCcccCCCHHH
Confidence            33346678899999999999999987 44433                        245889999999999999999999


Q ss_pred             HHHHHHh
Q 044320          137 VARQLEN  143 (176)
Q Consensus       137 i~~~l~~  143 (176)
                      +++.|+.
T Consensus       254 l~~~l~~  260 (261)
T cd05068         254 LQWKLED  260 (261)
T ss_pred             HHHHHhc
Confidence            9999985

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.93  E-value=2.2e-26  Score=165.99  Aligned_cols=132  Identities=20%  Similarity=0.254  Sum_probs=113.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~~   84 (176)
                      +..|++++...|++|+..|++|+|..+   ||||||||+|||++++..++++|||++....... .....|++++.+|++
T Consensus       117 ~VtlSEK~tR~iMrqlfegVeylHa~~---IVHRDLKpENILlddn~~i~isDFGFa~~l~~GekLrelCGTPgYLAPEt  193 (411)
T KOG0599|consen  117 KVTLSEKETRRIMRQLFEGVEYLHARN---IVHRDLKPENILLDDNMNIKISDFGFACQLEPGEKLRELCGTPGYLAPET  193 (411)
T ss_pred             heeecHHHHHHHHHHHHHHHHHHHHhh---hhhcccChhheeeccccceEEeccceeeccCCchhHHHhcCCCcccChhh
Confidence            456899999999999999999999999   9999999999999999999999999998766543 233456666666655


Q ss_pred             C-------CCCCCcccchhhHhHHHHHHhccChHHHH---------------------------HHHHHHHhhcccCCCC
Q 044320           85 H-------TQQLTEKSDIYGLGIACLYMGLYSFEYLK---------------------------RFMSLALKYCEDETKA  130 (176)
Q Consensus        85 ~-------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~---------------------------~l~~l~~~~~~~~p~~  130 (176)
                      .       ...|+...|+||.|+++|.++.|.+||..                           ...+++.+|++.||.+
T Consensus       194 ikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~  273 (411)
T KOG0599|consen  194 IKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTK  273 (411)
T ss_pred             eeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcccccCCcchhhccccHHHHHHHHHeeCchh
Confidence            3       56788999999999999999999999864                           3788999999999999


Q ss_pred             CCCHHHHHHH
Q 044320          131 RPSMLEVARQ  140 (176)
Q Consensus       131 Rp~~~~i~~~  140 (176)
                      |.|..+++..
T Consensus       274 Ritake~LaH  283 (411)
T KOG0599|consen  274 RITAKEALAH  283 (411)
T ss_pred             cccHHHHhcC
Confidence            9999988753

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.93  E-value=5e-26  Score=168.07  Aligned_cols=137  Identities=20%  Similarity=0.317  Sum_probs=110.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Ccccccee-e
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHVSI-V   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~-~   80 (176)
                      ....+++.+++.++.|++.||+|+|+.+   ++|+||+|+||+++.++.++++|||.+.........   ...+...+ +
T Consensus        96 ~~~~~~~~~~~~~~~~l~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~a  172 (261)
T cd05072          96 EGGKVLLPKLIDFSAQIAEGMAYIERKN---YIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTA  172 (261)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhhEEecCCCcEEECCCccceecCCCceeccCCCccceecCC
Confidence            3456889999999999999999999998   999999999999999999999999999765433211   11122223 3


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++|+||||+++|++.+ +..||                        +..+.+++.+||..+|++||+++
T Consensus       173 PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~  252 (261)
T cd05072         173 PEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGYRMPRMENCPDELYDIMKTCWKEKAEERPTFD  252 (261)
T ss_pred             HHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHH
Confidence            333445667889999999999999987 66554                        23588999999999999999999


Q ss_pred             HHHHHHHhh
Q 044320          136 EVARQLENI  144 (176)
Q Consensus       136 ~i~~~l~~~  144 (176)
                      ++.+.|+++
T Consensus       253 ~i~~~l~~~  261 (261)
T cd05072         253 YLQSVLDDF  261 (261)
T ss_pred             HHHHHHhcC
Confidence            999999853

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.93  E-value=5.9e-26  Score=169.91  Aligned_cols=131  Identities=15%  Similarity=0.088  Sum_probs=106.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~   82 (176)
                      ...+++..++.++.|++.||.|||+.+   ++|+||||+||+++.++.++++|||++........   ....+...+.+|
T Consensus        94 ~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP  170 (287)
T cd07848          94 PNGVPPEKVRSYIYQLIKAIHWCHKND---IVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSP  170 (287)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEEeeccCcccccccccccccccccccccCCc
Confidence            456899999999999999999999999   99999999999999999999999999876543221   112234444444


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhccChHHH------------------------------------------------
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------------  113 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------------  113 (176)
                      + ..+..++.++|+||+||++|++.++..+|.                                                
T Consensus       171 E~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (287)
T cd07848         171 ELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLER  250 (287)
T ss_pred             HHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHH
Confidence            4 346678899999999999999988876542                                                


Q ss_pred             -------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 -------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 -------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                             ..+.+++.+|+..+|++||+++++++
T Consensus       251 ~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         251 RYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             hhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence                   23678999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.93  E-value=6.3e-26  Score=172.10  Aligned_cols=130  Identities=19%  Similarity=0.223  Sum_probs=103.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe----CCCCCeEEeecCCcccCCCCC-----CCCccccc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL----DSKFTPKVFDFEISRLAPVPN-----INGVVGHV   77 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~----~~~~~~~l~dfg~~~~~~~~~-----~~~~~~~~   77 (176)
                      ..+++..+..++.|++.||.|||+++   ++||||||+||++    +.++.+|++|||+++......     .....+..
T Consensus       103 ~~l~~~~~~~i~~qi~~al~~LH~~~---ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~  179 (317)
T cd07868         103 VQLPRGMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTF  179 (317)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhCC---EEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccc
Confidence            45899999999999999999999999   9999999999999    455789999999997654322     11223444


Q ss_pred             eeeecCCC-C-CCCCcccchhhHhHHHHHHhccChHHH------------------------------------------
Q 044320           78 SIVVKGTH-T-QQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------  113 (176)
Q Consensus        78 ~~~~~~~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------  113 (176)
                      .+.+|+.. + ..++.++|+||+||++|+|.++..+|.                                          
T Consensus       180 ~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (317)
T cd07868         180 WYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHS  259 (317)
T ss_pred             cccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchh
Confidence            45555543 3 457889999999999999988765541                                          


Q ss_pred             ----------------------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 ----------------------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ----------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                                  ..+.+++.+|+..||.+|||++++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~  313 (317)
T cd07868         260 TLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ  313 (317)
T ss_pred             hhhhhhhccccCcccccchHHhcCCCCChHHHHHHHHHhccCcccCCCHHHHhc
Confidence                                        12457899999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.93  E-value=2.7e-26  Score=174.84  Aligned_cols=131  Identities=18%  Similarity=0.233  Sum_probs=107.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      +..+++.++..++.|++.||+|||+.+   ++||||||+||+++.++.++|+|||+++......  .....|...+.+|+
T Consensus        89 ~~~~~~~~~~~~~~qi~~~L~~lH~~~---ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE  165 (323)
T cd05571          89 ERVFSEDRARFYGAEIVSALGYLHSCD---VVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPE  165 (323)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccceecCccccChh
Confidence            457899999999999999999999999   9999999999999999999999999987533221  11223444555444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCC-----CH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARP-----SM  134 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp-----~~  134 (176)
                      . ....++.++|+||+||++|||.++..||.                       ..+.+++.+||..+|++||     ++
T Consensus       166 ~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~  245 (323)
T cd05571         166 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDA  245 (323)
T ss_pred             hhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCH
Confidence            4 46778999999999999999998887752                       3578899999999999999     78


Q ss_pred             HHHHH
Q 044320          135 LEVAR  139 (176)
Q Consensus       135 ~~i~~  139 (176)
                      .++++
T Consensus       246 ~~ll~  250 (323)
T cd05571         246 KEIME  250 (323)
T ss_pred             HHHHc
Confidence            88764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.93  E-value=5.8e-26  Score=175.28  Aligned_cols=131  Identities=22%  Similarity=0.182  Sum_probs=106.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecC-C
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKG-T   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~-~   84 (176)
                      ..+++.++..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++...... .....+...+.+|+ .
T Consensus       118 ~~~~~~~~~~~~~qi~~~L~~LH~~~---ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~  194 (359)
T cd07876         118 MELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVI  194 (359)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEecCCCccccccCccCCCCcccCCCCCchhc
Confidence            35788999999999999999999999   9999999999999999999999999987543322 11223334444444 4


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------------------------------
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------------------------------  113 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------------------------------  113 (176)
                      .+..++.++||||+|+++|+|.++..+|.                                                   
T Consensus       195 ~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (359)
T cd07876         195 LGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPD  274 (359)
T ss_pred             cCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhccc
Confidence            46778999999999999999988775541                                                   


Q ss_pred             --------------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 --------------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 --------------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                    ..+.+++.+|+..+|++|||+.++++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  315 (359)
T cd07876         275 WIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRH  315 (359)
T ss_pred             cccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcC
Confidence                          235789999999999999999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.93  E-value=3.9e-26  Score=180.64  Aligned_cols=138  Identities=17%  Similarity=0.193  Sum_probs=109.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-CeEEeecCCcccCCCCC-CCCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF-TPKVFDFEISRLAPVPN-INGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~-~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~   82 (176)
                      .+..+++..++.++.|++.||.|||+++   ++||||||+||+++.++ .+||+|||+++...... .....+...+.+|
T Consensus       163 ~~~~l~~~~~~~~~~qi~~gL~yLH~~~---IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~~~~~~~t~~y~aP  239 (440)
T PTZ00036        163 NNHALPLFLVKLYSYQLCRALAYIHSKF---ICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQRSVSYICSRFYRAP  239 (440)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCcCHHHEEEcCCCCceeeeccccchhccCCCCcccCCCCcCccCH
Confidence            4567999999999999999999999999   99999999999998664 79999999998654322 1223344555555


Q ss_pred             CCC--CCCCCcccchhhHhHHHHHHhccChHHH-----------------------------------------------
Q 044320           83 GTH--TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------------------------------  113 (176)
Q Consensus        83 ~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------------------------------  113 (176)
                      +..  ...++.++||||+||++|+|.++..+|.                                               
T Consensus       240 E~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  319 (440)
T PTZ00036        240 ELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVF  319 (440)
T ss_pred             HHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHh
Confidence            543  3468999999999999999988765541                                               


Q ss_pred             -----HHHHHHHHhhcccCCCCCCCHHHHHH--HHHhhh
Q 044320          114 -----KRFMSLALKYCEDETKARPSMLEVAR--QLENIS  145 (176)
Q Consensus       114 -----~~l~~l~~~~~~~~p~~Rp~~~~i~~--~l~~~~  145 (176)
                           .++.+++.+||..+|.+||++.++++  .+..+.
T Consensus       320 p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~~  358 (440)
T PTZ00036        320 PKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDLR  358 (440)
T ss_pred             ccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhhh
Confidence                 24678999999999999999999874  344443

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.93  E-value=7.7e-26  Score=166.53  Aligned_cols=135  Identities=26%  Similarity=0.349  Sum_probs=108.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      ...+++.+++.++.|++.||.|+|+.+   ++|||++|+||+++.++.++++|||.+...............+.+++...
T Consensus        94 ~~~~~~~~~~~~~~qi~~al~~lH~~~---~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~~  170 (254)
T cd05083          94 RALVSVIQLLQFSLDVAEGMEYLESKK---LVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEALK  170 (254)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccCcceEEEcCCCcEEECCCccceeccccCCCCCCCceecCHHHhc
Confidence            446899999999999999999999999   99999999999999999999999998875432211111122233344344


Q ss_pred             CCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320           86 TQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus        86 ~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                      ...++.++|+||||+++|++.+ +..||                        +..+.+++.+||..+|+.||++.++++.
T Consensus       171 ~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  250 (254)
T cd05083         171 HKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVEKGYRMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLREK  250 (254)
T ss_pred             cCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            6678889999999999999976 55543                        2357889999999999999999999998


Q ss_pred             HHh
Q 044320          141 LEN  143 (176)
Q Consensus       141 l~~  143 (176)
                      |++
T Consensus       251 l~~  253 (254)
T cd05083         251 LEK  253 (254)
T ss_pred             Hcc
Confidence            864

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=8e-26  Score=166.54  Aligned_cols=134  Identities=23%  Similarity=0.341  Sum_probs=109.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHT   86 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (176)
                      ..+++..+..++.|++.||.|+|+.+   ++|+||+|.||+++.++.++++|||.++..............+.+++....
T Consensus        97 ~~~~~~~~~~~~~qi~~~l~~lh~~~---i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~ape~~~~  173 (256)
T cd05039          97 AVITLAQQLGFALDVCEGMEYLEEKN---FVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKWTAPEALRE  173 (256)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---ccchhcccceEEEeCCCCEEEcccccccccccccccCCCcccccCchhhcC
Confidence            36899999999999999999999999   999999999999999999999999998776433222222222334444456


Q ss_pred             CCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHHHHH
Q 044320           87 QQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVARQL  141 (176)
Q Consensus        87 ~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l  141 (176)
                      ..++.++|+||||+++|++.+ +..+|                        +..+.+++.+||..+|++||++.++++.|
T Consensus       174 ~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l  253 (256)
T cd05039         174 KKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHVEKGYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLREQL  253 (256)
T ss_pred             CcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCccCCCHHHHHHHHHHhccChhhCcCHHHHHHHH
Confidence            678889999999999999975 44332                        35688999999999999999999999998


Q ss_pred             Hh
Q 044320          142 EN  143 (176)
Q Consensus       142 ~~  143 (176)
                      ++
T Consensus       254 ~~  255 (256)
T cd05039         254 AL  255 (256)
T ss_pred             hc
Confidence            75

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.93  E-value=9.6e-26  Score=167.28  Aligned_cols=136  Identities=18%  Similarity=0.236  Sum_probs=108.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC---cccc-ceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING---VVGH-VSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~---~~~~-~~~~~   81 (176)
                      ...+++.+++.++.|++.||+|+|+++   ++||||||+||+++.++.++++|||............   ..+. .+.++
T Consensus       101 ~~~l~~~~~~~~~~~i~~al~~lH~~~---iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aP  177 (266)
T cd05064         101 EGQLVAGQLMGMLPGLASGMKYLSEMG---YVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAP  177 (266)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---EeeccccHhhEEEcCCCcEEECCCcccccccccchhcccCCCCceeecCH
Confidence            457899999999999999999999999   9999999999999999999999999876543221111   1111 23334


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++||||||+++|++++ +..||                        +..+.+++.+||+.+|.+||++.+
T Consensus       178 E~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~  257 (266)
T cd05064         178 EAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAVEDGFRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQ  257 (266)
T ss_pred             HHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCCchhCCCHHH
Confidence            43456778899999999999999654 55554                        245788999999999999999999


Q ss_pred             HHHHHHhh
Q 044320          137 VARQLENI  144 (176)
Q Consensus       137 i~~~l~~~  144 (176)
                      +.+.|.++
T Consensus       258 i~~~l~~~  265 (266)
T cd05064         258 IHSILSKM  265 (266)
T ss_pred             HHHHHHhh
Confidence            99998765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.93  E-value=1.2e-25  Score=168.72  Aligned_cols=138  Identities=20%  Similarity=0.313  Sum_probs=110.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCcccc-ceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGH-VSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~-~~~~   80 (176)
                      ...+++.+++.++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||+++.......    ....+. .+.+
T Consensus       121 ~~~l~~~~~~~i~~~i~~~l~~LH~~~---ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  197 (290)
T cd05045         121 ERALTMGDLISFAWQISRGMQYLAEMK---LVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMA  197 (290)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHCC---eehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccC
Confidence            356899999999999999999999999   99999999999999999999999999875432211    111111 2233


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++|+||||+++|++.+ +..||                        +..+.+++..||+.+|++||++.
T Consensus       198 pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~  277 (290)
T cd05045         198 IESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRMERPENCSEEMYNLMLTCWKQEPDKRPTFA  277 (290)
T ss_pred             HHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHH
Confidence            333446678899999999999999987 55443                        23688999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 044320          136 EVARQLENISS  146 (176)
Q Consensus       136 ~i~~~l~~~~~  146 (176)
                      ++++.|+++..
T Consensus       278 ~i~~~l~~~~~  288 (290)
T cd05045         278 DISKELEKMMV  288 (290)
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.93  E-value=1e-25  Score=166.40  Aligned_cols=138  Identities=25%  Similarity=0.362  Sum_probs=109.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC------CCccccc-e
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI------NGVVGHV-S   78 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~------~~~~~~~-~   78 (176)
                      ...+++..+..++.|++.||.|+|..+   ++|+||+|+||+++.++.++++|||+++.......      ....+.. +
T Consensus        92 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y  168 (262)
T cd05058          92 THNPTVKDLIGFGLQVAKGMEYLASKK---FVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKW  168 (262)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccc
Confidence            345678889999999999999999998   99999999999999999999999999875432211      1111222 3


Q ss_pred             eeecCCCCCCCCcccchhhHhHHHHHHhcc-ChH------------------------HHHHHHHHHHhhcccCCCCCCC
Q 044320           79 IVVKGTHTQQLTEKSDIYGLGIACLYMGLY-SFE------------------------YLKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        79 ~~~~~~~~~~~~~~~Dv~s~G~~l~~l~~~-~~~------------------------~~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      .+++......++.++||||||+++||+.++ ..+                        ++..+.+++.+||..+|++||+
T Consensus       169 ~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~  248 (262)
T cd05058         169 MALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGRRLLQPEYCPDPLYEVMLSCWHPKPEMRPT  248 (262)
T ss_pred             cChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCC
Confidence            333334466788899999999999999774 222                        2356889999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q 044320          134 MLEVARQLENISS  146 (176)
Q Consensus       134 ~~~i~~~l~~~~~  146 (176)
                      +.++++.|+++..
T Consensus       249 ~~~il~~l~~~~~  261 (262)
T cd05058         249 FSELVSRIEQIFS  261 (262)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999997653

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.93  E-value=7.7e-26  Score=170.87  Aligned_cols=141  Identities=21%  Similarity=0.259  Sum_probs=110.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-Ccc-ccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-GVV-GHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~-~~~~~~~~~   83 (176)
                      ...+++.+++.++.|++.||+|||+.+   ++||||||+||+++.++.++++|||++......... ... ...+.+++.
T Consensus       118 ~~~l~~~~~~~~~~qi~~al~~LH~~g---i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~  194 (303)
T cd05088         118 ASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIES  194 (303)
T ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchheEEecCCCcEEeCccccCcccchhhhcccCCCcccccCHHH
Confidence            346899999999999999999999999   999999999999999999999999998643211111 111 112233333


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                      .....++.++||||||+++|++.+ +..||                        +..+.+++.+||..+|++||++.+++
T Consensus       195 ~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il  274 (303)
T cd05088         195 LNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL  274 (303)
T ss_pred             HhccCCcccccchhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence            345567889999999999999986 55543                        23577899999999999999999999


Q ss_pred             HHHHhhhhcCC
Q 044320          139 RQLENISSMLP  149 (176)
Q Consensus       139 ~~l~~~~~~~~  149 (176)
                      +.|.++.....
T Consensus       275 ~~l~~~~~~~~  285 (303)
T cd05088         275 VSLNRMLEERK  285 (303)
T ss_pred             HHHHHHHHhhh
Confidence            99998766543

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.2e-25  Score=165.80  Aligned_cols=136  Identities=20%  Similarity=0.245  Sum_probs=110.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC---cc--c-cceee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING---VV--G-HVSIV   80 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~---~~--~-~~~~~   80 (176)
                      ..+++..+..++.|++.||+|||..+   ++|+||+|+||+++.++.++++|||.++.........   ..  + ..+.+
T Consensus        90 ~~~~~~~~~~~~~qi~~~l~~lh~~~---i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~a  166 (257)
T cd05060          90 REIPVSDLKELAHQVAMGMAYLESKH---FVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYA  166 (257)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhcC---eeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCccccccccC
Confidence            36899999999999999999999999   9999999999999999999999999987653322111   11  1 12334


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++|+||||+++|++.+ +..||.                        ..+.+++.+||..+|.+||++.
T Consensus       167 PE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~  246 (257)
T cd05060         167 PECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLESGERLPRPEECPQEIYSIMLSCWKYRPEDRPTFS  246 (257)
T ss_pred             HHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHH
Confidence            444456678889999999999999986 666541                        3578999999999999999999


Q ss_pred             HHHHHHHhhh
Q 044320          136 EVARQLENIS  145 (176)
Q Consensus       136 ~i~~~l~~~~  145 (176)
                      ++++.|+++.
T Consensus       247 ~l~~~l~~~~  256 (257)
T cd05060         247 ELESTFRRDP  256 (257)
T ss_pred             HHHHHHHhcc
Confidence            9999998753

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.93  E-value=1.1e-25  Score=172.64  Aligned_cols=130  Identities=19%  Similarity=0.218  Sum_probs=106.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH-   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~-   85 (176)
                      ..+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++++|||+++....... ...+...+.+|+.. 
T Consensus       113 ~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~t~~y~aPE~~~  188 (343)
T cd07878         113 QKLSDEHVQFLIYQLLRGLKYIHSAG---IIHRDLKPSNVAVNEDCELRILDFGLARQADDEMT-GYVATRWYRAPEIML  188 (343)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eecccCChhhEEECCCCCEEEcCCccceecCCCcC-CccccccccCchHhc
Confidence            46999999999999999999999999   99999999999999999999999999876544322 22344455555543 


Q ss_pred             C-CCCCcccchhhHhHHHHHHhccChHHH---------------------------------------------------
Q 044320           86 T-QQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------------------------------  113 (176)
Q Consensus        86 ~-~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------------------------------  113 (176)
                      . ..++.++||||+||++|+|.++..+|.                                                   
T Consensus       189 ~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (343)
T cd07878         189 NWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFR  268 (343)
T ss_pred             CCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhcc
Confidence            2 467889999999999999988765542                                                   


Q ss_pred             ---HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 ---KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 ---~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                         ..+.+++.+|+..+|.+|||+.++++.
T Consensus       269 ~~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         269 GANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             CCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence               114588999999999999999999854

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.93  E-value=4.3e-26  Score=172.14  Aligned_cols=131  Identities=21%  Similarity=0.210  Sum_probs=105.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...++.+++..++.|++.||+|||+.+   ++||||||+||+++.++.++++|||++.......  .....+...+.+|+
T Consensus        97 ~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE  173 (303)
T cd07869          97 PGGLHPENVKLFLFQLLRGLSYIHQRY---ILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPD  173 (303)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECCCCcceeccCCCccCCCCcccCCCCChH
Confidence            456899999999999999999999999   9999999999999999999999999986543222  11223344455555


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHHH------------------------------------------------
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------------  113 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------------  113 (176)
                      ..  ...++.++|+||+||++|+|.++..||.                                                
T Consensus       174 ~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (303)
T cd07869         174 VLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQ  253 (303)
T ss_pred             HHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHH
Confidence            43  3457889999999999999988876552                                                


Q ss_pred             --------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 --------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 --------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                              ..+.+++.+|++.+|++|||+.++++
T Consensus       254 ~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         254 AWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             HhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence                    23568999999999999999998875

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.93  E-value=4.9e-26  Score=170.51  Aligned_cols=131  Identities=21%  Similarity=0.238  Sum_probs=107.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKG-   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~-   83 (176)
                      ...+++.++..++.|++.||+|||+.+   ++||||||+||+++.++.++++|||++....... .....+...+.+|+ 
T Consensus        96 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~  172 (285)
T cd05631          96 NPGFDEQRAIFYAAELCCGLEDLQRER---IVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETVRGRVGTVGYMAPEV  172 (285)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCeecCCCCCCCccCHhh
Confidence            346899999999999999999999999   9999999999999999999999999987654322 12233444454444 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCCC---
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARPS---  133 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp~---  133 (176)
                      .....++.++||||+||++|++.++..||.                           ..+.+++.+||..+|++||+   
T Consensus       173 ~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~  252 (285)
T cd05631         173 INNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLGCRG  252 (285)
T ss_pred             hcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhcccccCCccCCHHHHHHHHHHhhcCHHHhcCCCC
Confidence            446778999999999999999998877752                           24778999999999999997   


Q ss_pred             --HHHHHH
Q 044320          134 --MLEVAR  139 (176)
Q Consensus       134 --~~~i~~  139 (176)
                        ++++++
T Consensus       253 ~~~~~~~~  260 (285)
T cd05631         253 NGAAGVKQ  260 (285)
T ss_pred             CCHHHHhc
Confidence              677765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.93  E-value=2.2e-25  Score=168.26  Aligned_cols=138  Identities=17%  Similarity=0.247  Sum_probs=111.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceee-e
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIV-V   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~-~   81 (176)
                      ..+++.+++.++.|++.||.|||+.+   ++|+||||+||+++.++.++++|||.++........    ...+...+. +
T Consensus       132 ~~~~~~~~~~~~~qi~~al~~LH~~g---ivH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aP  208 (304)
T cd05101         132 EQMTFKDLVSCTYQVARGMEYLASQK---CIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAP  208 (304)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHCC---eeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCc
Confidence            46889999999999999999999999   999999999999999999999999998765432211    111222233 3


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++||||||+++|++.+ +..++                        +..+.+++.+||..+|.+||++.+
T Consensus       209 E~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e  288 (304)
T cd05101         209 EALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQ  288 (304)
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccChhhCCCHHH
Confidence            33446678899999999999999976 33322                        235788999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 044320          137 VARQLENISSM  147 (176)
Q Consensus       137 i~~~l~~~~~~  147 (176)
                      +++.|+++...
T Consensus       289 ~l~~l~~~~~~  299 (304)
T cd05101         289 LVEDLDRILTL  299 (304)
T ss_pred             HHHHHHHHHHh
Confidence            99999987764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.93  E-value=1.5e-25  Score=166.57  Aligned_cols=136  Identities=22%  Similarity=0.302  Sum_probs=108.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC-c-cccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING-V-VGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~-~-~~~~~~~~~~~   84 (176)
                      ..+++.+++.++.|++.||+|+|+.+   ++|+||||+||+++.++.++++|||++.......... . ....+.+++..
T Consensus       107 ~~l~~~~~~~~~~~i~~al~~lH~~~---i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~  183 (270)
T cd05047         107 STLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESL  183 (270)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccccceEEEcCCCeEEECCCCCccccchhhhccCCCCccccCChHHH
Confidence            45899999999999999999999999   9999999999999999999999999985322111111 1 11113333333


Q ss_pred             CCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      ....++.++|+||||+++|++.+ +..||.                        ..+.+++.+||..+|.+||++.+++.
T Consensus       184 ~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  263 (270)
T cd05047         184 NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILV  263 (270)
T ss_pred             ccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHH
Confidence            46677889999999999999985 655542                        24788999999999999999999999


Q ss_pred             HHHhhh
Q 044320          140 QLENIS  145 (176)
Q Consensus       140 ~l~~~~  145 (176)
                      .|.++.
T Consensus       264 ~l~~~~  269 (270)
T cd05047         264 SLNRML  269 (270)
T ss_pred             HHHHhh
Confidence            998764

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.93  E-value=6.6e-26  Score=174.68  Aligned_cols=131  Identities=21%  Similarity=0.182  Sum_probs=106.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecC-C
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKG-T   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~-~   84 (176)
                      ..+++..+..++.|++.||.|||+++   ++||||||+||+++.++.++++|||+++....... ....+...+.+|+ .
T Consensus       114 ~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~  190 (355)
T cd07874         114 MELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVI  190 (355)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHHEEECCCCCEEEeeCcccccCCCccccCCccccCCccCHHHH
Confidence            34788899999999999999999999   99999999999999999999999999976544322 1223344444444 3


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------------------------------
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------------------------------  113 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------------------------------  113 (176)
                      .+..++.++|+|||||++|+|.++..+|.                                                   
T Consensus       191 ~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (355)
T cd07874         191 LGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPD  270 (355)
T ss_pred             cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccc
Confidence            46678899999999999999987664431                                                   


Q ss_pred             --------------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 --------------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 --------------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                    ..+.+++.+|+..+|++|||+.++++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~h  311 (355)
T cd07874         271 SLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQH  311 (355)
T ss_pred             cccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcC
Confidence                          235789999999999999999999885

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.93  E-value=1.8e-25  Score=164.33  Aligned_cols=134  Identities=21%  Similarity=0.237  Sum_probs=107.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCc----c-ccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV----V-GHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~----~-~~~~~~   80 (176)
                      +..+++.+++.++.|++.||.|+|+.+   ++|+||+|.||+++.++.++++|||++...........    . ...+.+
T Consensus        88 ~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  164 (252)
T cd05084          88 GPRLKVKELIQMVENAAAGMEYLESKH---CIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTA  164 (252)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecC
Confidence            456899999999999999999999999   99999999999999999999999999875442211111    1 112333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++|+||||+++|++.+ +..|+                        +..+.+++.+|+..+|++||++.
T Consensus       165 PE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  244 (252)
T cd05084         165 PEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRLPCPELCPDAVYRLMERCWEYDPGQRPSFS  244 (252)
T ss_pred             chhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCcccCCHHHHHHHHHHcCCChhhCcCHH
Confidence            444456678889999999999999876 54443                        23578899999999999999999


Q ss_pred             HHHHHHH
Q 044320          136 EVARQLE  142 (176)
Q Consensus       136 ~i~~~l~  142 (176)
                      ++.+.|+
T Consensus       245 ~~~~~l~  251 (252)
T cd05084         245 TVHQELQ  251 (252)
T ss_pred             HHHHHHh
Confidence            9999876

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.93  E-value=1.1e-26  Score=171.89  Aligned_cols=133  Identities=29%  Similarity=0.394  Sum_probs=103.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Cccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~   80 (176)
                      ...+++.+++.++.|++.||.|||+.+   ++|++|+++||+++.++.+|++|||+..........     ......|.+
T Consensus        97 ~~~~~~~~~~~i~~~i~~~l~~Lh~~~---iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~a  173 (259)
T PF07714_consen   97 KEPLSEQQRLSIAIQIAEALSYLHSNN---IIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLA  173 (259)
T ss_dssp             TTTSBHHHHHHHHHHHHHHHHHHHHTT---EEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-
T ss_pred             ccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            567999999999999999999999998   999999999999999999999999998776322111     111222333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+......++.++||||||+++||+.+ +..++.                        ..+.+++..||..+|++||++.
T Consensus       174 PE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~  253 (259)
T PF07714_consen  174 PEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEEIIEKLKQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQ  253 (259)
T ss_dssp             HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHHHHHHHTTEETTSBTTSBHHHHHHHHHHT-SSGGGS--HH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccceeccchhHHHHHHHHHHcCCChhhCcCHH
Confidence            333345568999999999999999988 445442                        3588999999999999999999


Q ss_pred             HHHHHH
Q 044320          136 EVARQL  141 (176)
Q Consensus       136 ~i~~~l  141 (176)
                      ++++.|
T Consensus       254 ~i~~~L  259 (259)
T PF07714_consen  254 EILQEL  259 (259)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.93  E-value=6.5e-26  Score=170.10  Aligned_cols=131  Identities=23%  Similarity=0.245  Sum_probs=105.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      +..+++..+..++.|++.||+|||+++   ++||||||+||+++.++.+|++|||+++......  .....+...+.+|+
T Consensus        97 ~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE  173 (288)
T cd07871          97 GNLMSMHNVKIFMFQLLRGLSYCHKRK---ILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPD  173 (288)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEECcCcceeeccCCCccccCceecccccChH
Confidence            445889999999999999999999999   9999999999999999999999999986543222  11223344555555


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHHH------------------------------------------------
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------------  113 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------------  113 (176)
                      ..  ...++.++|+||+||++|++.++..+|.                                                
T Consensus       174 ~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (288)
T cd07871         174 VLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINH  253 (288)
T ss_pred             HhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHh
Confidence            43  3567889999999999999988775541                                                


Q ss_pred             -----HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 -----KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 -----~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                           .+..+++.+|+..+|.+|||+.++++
T Consensus       254 ~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         254 APRLDTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             CCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence                 23567999999999999999998874

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.93  E-value=1.4e-25  Score=167.57  Aligned_cols=136  Identities=21%  Similarity=0.318  Sum_probs=109.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC------Ccccccee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN------GVVGHVSI   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~------~~~~~~~~   79 (176)
                      +..+++..++.++.|++.||.|||+.+   ++|+||||+||+++.++.++++|||++.........      ...+..+.
T Consensus       102 ~~~l~~~~~~~~~~~l~~aL~~LH~~~---i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~  178 (284)
T cd05081         102 RERLDHRKLLLYASQICKGMEYLGSKR---YVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWY  178 (284)
T ss_pred             CcCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCCHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEee
Confidence            346899999999999999999999999   999999999999999999999999998865432211      11112234


Q ss_pred             eecCCCCCCCCcccchhhHhHHHHHHhccChH----------------------------------------HHHHHHHH
Q 044320           80 VVKGTHTQQLTEKSDIYGLGIACLYMGLYSFE----------------------------------------YLKRFMSL  119 (176)
Q Consensus        80 ~~~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~----------------------------------------~~~~l~~l  119 (176)
                      +++......++.++|+||||+++||+.++..+                                        ++..+.++
T Consensus       179 aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  258 (284)
T cd05081         179 APESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAI  258 (284)
T ss_pred             CHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCCcCCCCCCCCHHHHHH
Confidence            44444466788999999999999999764211                                        12468899


Q ss_pred             HHhhcccCCCCCCCHHHHHHHHHhh
Q 044320          120 ALKYCEDETKARPSMLEVARQLENI  144 (176)
Q Consensus       120 ~~~~~~~~p~~Rp~~~~i~~~l~~~  144 (176)
                      +.+||..+|++|||+.++++.|+.+
T Consensus       259 i~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         259 MKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             HHHHccCChhhCCCHHHHHHHHHhc
Confidence            9999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=5.7e-26  Score=170.70  Aligned_cols=131  Identities=20%  Similarity=0.189  Sum_probs=106.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecC-C
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKG-T   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~-~   84 (176)
                      +..+++.++..++.|++.||+|||+++   ++||||||+||+++.++.++++|||++........ ...|...+.+|+ .
T Consensus        95 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~-~~~gt~~y~aPE~~  170 (291)
T cd05612          95 SGRFSNSTGLFYASEIVCALEYLHSKE---IVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTW-TLCGTPEYLAPEVI  170 (291)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEEEecCcchhccCCcc-cccCChhhcCHHHH
Confidence            456899999999999999999999999   99999999999999999999999999876543322 223344444444 3


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCC-----HHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPS-----MLE  136 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~-----~~~  136 (176)
                      ....++.++||||+||++|+|.++..||.                       ..+.+++.+||..+|.+||+     +.+
T Consensus       171 ~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~  250 (291)
T cd05612         171 QSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGKLEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADD  250 (291)
T ss_pred             cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcCCCccCCHHHHHHHHHHcCCCHHHccCCccCCHHH
Confidence            46667899999999999999988876652                       24789999999999999995     777


Q ss_pred             HHHH
Q 044320          137 VARQ  140 (176)
Q Consensus       137 i~~~  140 (176)
                      +++.
T Consensus       251 ~l~h  254 (291)
T cd05612         251 VKNH  254 (291)
T ss_pred             HhcC
Confidence            7654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.93  E-value=1.9e-25  Score=166.64  Aligned_cols=138  Identities=20%  Similarity=0.312  Sum_probs=111.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccc-eeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHV-SIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~-~~~~   81 (176)
                      ..+++.+++.++.|++.||+|||+.+   ++|+||+|+||+++.++.++++|||+++.......    ....+.. +.++
T Consensus       112 ~~l~~~~~~~i~~~i~~~l~~LH~~~---i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~ap  188 (280)
T cd05043         112 QALSTQQLVHMAIQIACGMSYLHKRG---VIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMAL  188 (280)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCH
Confidence            56999999999999999999999999   99999999999999999999999999876532211    0111222 3333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++||||||+++|++.+ +..||                        +..+.+++.+||..+|++||++.+
T Consensus       189 E~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~  268 (280)
T cd05043         189 ESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLKDGYRLAQPINCPDELFAVMACCWALDPEERPSFSQ  268 (280)
T ss_pred             HHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHH
Confidence            33345668899999999999999987 55543                        245889999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 044320          137 VARQLENISSM  147 (176)
Q Consensus       137 i~~~l~~~~~~  147 (176)
                      +++.|+.+...
T Consensus       269 ~~~~l~~~~~~  279 (280)
T cd05043         269 LVQCLTDFHAQ  279 (280)
T ss_pred             HHHHHHHHHhc
Confidence            99999987654

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.93  E-value=8e-26  Score=176.50  Aligned_cols=132  Identities=22%  Similarity=0.265  Sum_probs=106.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~   81 (176)
                      ...+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++........    ....|...+.+
T Consensus       179 ~~~l~~~~~~~i~~ql~~aL~~LH~~g---ivHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~a  255 (392)
T PHA03207        179 SGPLPLEQAITIQRRLLEALAYLHGRG---IIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNS  255 (392)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEcCCCCEEEccCccccccCcccccccccccccccCccC
Confidence            467999999999999999999999999   99999999999999999999999999875443221    12234444444


Q ss_pred             cCC-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------------------------------
Q 044320           82 KGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------------------------------  113 (176)
Q Consensus        82 ~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------------------------------  113 (176)
                      |+. ....++.++||||+||++|+|.++..||.                                               
T Consensus       256 PE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (392)
T PHA03207        256 PELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPP  335 (392)
T ss_pred             HhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCC
Confidence            444 46678899999999999999987665541                                               


Q ss_pred             -------------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 -------------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 -------------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                   ..+.+++.+|+..+|++||++.+++..
T Consensus       336 ~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~  375 (392)
T PHA03207        336 YTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSL  375 (392)
T ss_pred             ccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhC
Confidence                         135568899999999999999998765

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.93  E-value=1.2e-25  Score=173.53  Aligned_cols=100  Identities=25%  Similarity=0.366  Sum_probs=81.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC-CCCCccccceeeecC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP-NINGVVGHVSIVVKG   83 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~~~~~   83 (176)
                      ....+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++++|||++...... ......+...+.+|+
T Consensus       150 ~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE  226 (357)
T PHA03209        150 RSRPLPIDQALIIEKQILEGLRYLHAQR---IIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFLGLAGTVETNAPE  226 (357)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEecCccccccccCcccccccccccccCCe
Confidence            3467999999999999999999999999   999999999999999999999999998753322 222233444444444


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhc
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGL  107 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~  107 (176)
                       .....++.++|+|||||++||+++
T Consensus       227 ~~~~~~~~~~~DiwSlGvvl~ell~  251 (357)
T PHA03209        227 VLARDKYNSKADIWSAGIVLFEMLA  251 (357)
T ss_pred             ecCCCCCCchhhHHHHHHHHHHHHH
Confidence             446778999999999999999975

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.3e-25  Score=165.49  Aligned_cols=133  Identities=18%  Similarity=0.251  Sum_probs=106.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCc---ccc-ceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV---VGH-VSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~---~~~-~~~~~   81 (176)
                      ...+++..++.++.|++.|++|||+.+   ++|+||+|+||+++.++.++++|||.++..........   .+. .+.++
T Consensus        94 ~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~P  170 (256)
T cd05059          94 KGKLGTEWLLDMCSDVCEAMEYLESNG---FIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPP  170 (256)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHCC---cccccccHhhEEECCCCcEEECCcccceecccccccccCCCCCCccccCH
Confidence            346899999999999999999999999   99999999999999999999999998876543221111   111 23333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||+++|++.+ +..||                        +..+.+++.+||..+|++||++.+
T Consensus       171 e~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~  250 (256)
T cd05059         171 EVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKK  250 (256)
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHH
Confidence            33446778889999999999999987 44443                        245889999999999999999999


Q ss_pred             HHHHH
Q 044320          137 VARQL  141 (176)
Q Consensus       137 i~~~l  141 (176)
                      +++.|
T Consensus       251 ~l~~l  255 (256)
T cd05059         251 LLSQL  255 (256)
T ss_pred             HHHHh
Confidence            99876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.93  E-value=1.1e-25  Score=180.32  Aligned_cols=132  Identities=19%  Similarity=0.221  Sum_probs=109.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~   81 (176)
                      ...+++.++..++.|++.||.|+|+.+   ++||||||+||+++.++.++|+|||+++......    .....|...|.+
T Consensus       137 ~~~l~e~~~~~i~~qll~aL~~lH~~~---IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~a  213 (496)
T PTZ00283        137 NRTFREHEAGLLFIQVLLAVHHVHSKH---MIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVA  213 (496)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeC
Confidence            456899999999999999999999999   9999999999999999999999999987654321    112234555555


Q ss_pred             cCC-CCCCCCcccchhhHhHHHHHHhccChHHH------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      |+. ....++.++||||||+++|++.++..||.                        ..+.+++.+||..+|.+||++.+
T Consensus       214 PE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~e  293 (496)
T PTZ00283        214 PEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYDPLPPSISPEMQEIVTALLSSDPKRRPSSSK  293 (496)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHH
Confidence            554 46678999999999999999988876652                        35888999999999999999999


Q ss_pred             HHHH
Q 044320          137 VARQ  140 (176)
Q Consensus       137 i~~~  140 (176)
                      ++..
T Consensus       294 ll~~  297 (496)
T PTZ00283        294 LLNM  297 (496)
T ss_pred             HHhC
Confidence            8753

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.93  E-value=1.8e-25  Score=168.23  Aligned_cols=133  Identities=23%  Similarity=0.316  Sum_probs=105.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCc----ccc-ceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV----VGH-VSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~----~~~-~~~~~   81 (176)
                      ..+++.++..++.|++.||+|||+.+   ++|+||||+||+++.++.++++|||++...........    ... .+..+
T Consensus       125 ~~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (296)
T cd05095         125 VTISYSTLIFMATQIASGMKYLSSLN---FVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSW  201 (296)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHCC---eecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCH
Confidence            45888999999999999999999999   99999999999999999999999999875433221111    111 22233


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc--cChHH-------------------------------HHHHHHHHHhhcccCC
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL--YSFEY-------------------------------LKRFMSLALKYCEDET  128 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~--~~~~~-------------------------------~~~l~~l~~~~~~~~p  128 (176)
                      +......++.++|+||||+++||+.+  +..||                               +..+.+++.+||+.+|
T Consensus       202 e~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p  281 (296)
T cd05095         202 ESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNA  281 (296)
T ss_pred             HHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCc
Confidence            33345678899999999999999975  22222                               2457789999999999


Q ss_pred             CCCCCHHHHHHHHH
Q 044320          129 KARPSMLEVARQLE  142 (176)
Q Consensus       129 ~~Rp~~~~i~~~l~  142 (176)
                      .+||++.++++.|+
T Consensus       282 ~~Rp~~~~i~~~l~  295 (296)
T cd05095         282 KERPSFQEIHATLL  295 (296)
T ss_pred             ccCCCHHHHHHHHh
Confidence            99999999999886

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.93  E-value=1.8e-25  Score=165.15  Aligned_cols=135  Identities=21%  Similarity=0.306  Sum_probs=108.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC---ccccc-eeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING---VVGHV-SIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~---~~~~~-~~~~   81 (176)
                      ...+++..+..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||.+..........   ..+.. +.++
T Consensus        96 ~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~P  172 (260)
T cd05069          96 GKYLKLPQLVDMAAQIADGMAYIERMN---YIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAP  172 (260)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---EeecccCcceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCH
Confidence            345899999999999999999999999   9999999999999999999999999987654332111   11112 2333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||+++|++.+ +..||                        +..+.+++.+||..+|.+||++.+
T Consensus       173 e~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  252 (260)
T cd05069         173 EAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYRMPCPQGCPESLHELMKLCWKKDPDERPTFEY  252 (260)
T ss_pred             HHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHH
Confidence            33345678889999999999999987 55443                        235889999999999999999999


Q ss_pred             HHHHHHh
Q 044320          137 VARQLEN  143 (176)
Q Consensus       137 i~~~l~~  143 (176)
                      +++.|+.
T Consensus       253 i~~~l~~  259 (260)
T cd05069         253 IQSFLED  259 (260)
T ss_pred             HHHHHhc
Confidence            9999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.93  E-value=2.3e-26  Score=170.87  Aligned_cols=149  Identities=22%  Similarity=0.218  Sum_probs=115.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-CCeEEeecCCcccCCCCCCCCcc-ccceeee
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEISRLAPVPNINGVV-GHVSIVV   81 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-~~~~l~dfg~~~~~~~~~~~~~~-~~~~~~~   81 (176)
                      +.+..++.-.+.-+.+||..||+|||+.+   |+||||||.|+|+|.+ |.+||+|||.++......++..+ ..+++-+
T Consensus       117 ~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~---IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epniSYicSRyYRa  193 (364)
T KOG0658|consen  117 RANQRMPLLEIKLYTYQLFRGLAYLHSHG---ICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPNISYICSRYYRA  193 (364)
T ss_pred             hcCCCCceeeeHHHHHHHHHHHHHHHhcC---cccCCCChheEEEcCCCCeEEeccCCcceeeccCCCceeEEEeccccC
Confidence            34677888899999999999999999999   9999999999999976 89999999999987665544322 2344444


Q ss_pred             cCCC--CCCCCcccchhhHhHHHHHHhccChHHHH---------------------------------------------
Q 044320           82 KGTH--TQQLTEKSDIYGLGIACLYMGLYSFEYLK---------------------------------------------  114 (176)
Q Consensus        82 ~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~---------------------------------------------  114 (176)
                      |++.  ...|+.+.||||.||++.||+.|.+-|++                                             
T Consensus       194 PELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~  273 (364)
T KOG0658|consen  194 PELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKV  273 (364)
T ss_pred             HHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceee
Confidence            4443  67899999999999999999666554432                                             


Q ss_pred             -------HHHHHHHhhcccCCCCCCCHHHHHH-----HHHhhhhcCCCCCCCC
Q 044320          115 -------RFMSLALKYCEDETKARPSMLEVAR-----QLENISSMLPESDTIP  155 (176)
Q Consensus       115 -------~l~~l~~~~~~~~p~~Rp~~~~i~~-----~l~~~~~~~~~~~~~~  155 (176)
                             +..+++.+++..+|.+|.+..+++.     .|..-...+++....|
T Consensus       274 ~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr~~~~~l~~g~~lp  326 (364)
T KOG0658|consen  274 FFKRLPPDALDLLSKLLQYSPSKRLSALEALAHPFFDELRDPNTKLPNGRPLP  326 (364)
T ss_pred             cccCCCHHHHHHHHHHhccChhhcCCHHHHhcchhhHHhhCcCccCcCCCcCC
Confidence                   4788999999999999999887753     3333333345555443

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.93  E-value=1.5e-25  Score=172.66  Aligned_cols=130  Identities=25%  Similarity=0.340  Sum_probs=104.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecCCC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKGTH   85 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~~~   85 (176)
                      .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++.......  .....|...+.+++..
T Consensus       164 ~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~  240 (353)
T PLN00034        164 IADEQFLADVARQILSGIAYLHRRH---IVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERI  240 (353)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCEEEcccccceecccccccccccccCccccCcccc
Confidence            4567888999999999999999999   9999999999999999999999999987654321  1223345555555543


Q ss_pred             ------CCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCC
Q 044320           86 ------TQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARP  132 (176)
Q Consensus        86 ------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp  132 (176)
                            +...+.++|||||||++|++.++..+|.                           .++.+++.+||..+|++||
T Consensus       241 ~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp  320 (353)
T PLN00034        241 NTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQPPEAPATASREFRHFISCCLQREPAKRW  320 (353)
T ss_pred             ccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhccCCCCCCCccCHHHHHHHHHHccCChhhCc
Confidence                  2233568999999999999988876652                           3578999999999999999


Q ss_pred             CHHHHHHH
Q 044320          133 SMLEVARQ  140 (176)
Q Consensus       133 ~~~~i~~~  140 (176)
                      ++.++++.
T Consensus       321 t~~ell~h  328 (353)
T PLN00034        321 SAMQLLQH  328 (353)
T ss_pred             CHHHHhcC
Confidence            99999875

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.93  E-value=7.6e-27  Score=187.20  Aligned_cols=142  Identities=19%  Similarity=0.268  Sum_probs=119.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCC-----ccccc
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-ING-----VVGHV   77 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~-----~~~~~   77 (176)
                      ++...|+.-+...|++.||.|++||...+   +|||||..+|||++.+..||++|||+++...+.. ..+     ....+
T Consensus       723 ~~DGqftviQLVgMLrGIAsGMkYLsdm~---YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiR  799 (996)
T KOG0196|consen  723 QNDGQFTVIQLVGMLRGIASGMKYLSDMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIR  799 (996)
T ss_pred             hcCCceEeehHHHHHHHHHHHhHHHhhcC---chhhhhhhhheeeccceEEEeccccceeecccCCCccccccCCcccee
Confidence            34456999999999999999999999999   9999999999999999999999999999765433 111     12345


Q ss_pred             eeeecCCCCCCCCcccchhhHhHHHHHHhc-------------------------cChHHHHHHHHHHHhhcccCCCCCC
Q 044320           78 SIVVKGTHTQQLTEKSDIYGLGIACLYMGL-------------------------YSFEYLKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        78 ~~~~~~~~~~~~~~~~Dv~s~G~~l~~l~~-------------------------~~~~~~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      |.+|+.+...+|+.++||||||+++||.+.                         .+.+.+..|.+||+.||++|...||
T Consensus       800 WTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIkaIe~gyRLPpPmDCP~aL~qLMldCWqkdR~~RP  879 (996)
T KOG0196|consen  800 WTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEQGYRLPPPMDCPAALYQLMLDCWQKDRNRRP  879 (996)
T ss_pred             ecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhhcCC
Confidence            667777779999999999999999998732                         3333455699999999999999999


Q ss_pred             CHHHHHHHHHhhhhcC
Q 044320          133 SMLEVARQLENISSML  148 (176)
Q Consensus       133 ~~~~i~~~l~~~~~~~  148 (176)
                      .|.+|+..|+++...-
T Consensus       880 ~F~qiV~~lDklIrnP  895 (996)
T KOG0196|consen  880 KFAQIVSTLDKLIRNP  895 (996)
T ss_pred             CHHHHHHHHHHHhcCc
Confidence            9999999999988763

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.93  E-value=2.2e-25  Score=166.76  Aligned_cols=136  Identities=19%  Similarity=0.295  Sum_probs=109.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----CCccccc-ee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----NGVVGHV-SI   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~-~~   79 (176)
                      ...+++.++..++.|++.||+|+|+.+   ++|+||||+||+++.++.++++|||++........     ....+.. +.
T Consensus       103 ~~~~~~~~~~~i~~~i~~aL~~lH~~g---i~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~  179 (284)
T cd05079         103 KNKINLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWY  179 (284)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCcccc
Confidence            346899999999999999999999999   99999999999999999999999999876543221     1112222 33


Q ss_pred             eecCCCCCCCCcccchhhHhHHHHHHhccCh---------------------------------------HHHHHHHHHH
Q 044320           80 VVKGTHTQQLTEKSDIYGLGIACLYMGLYSF---------------------------------------EYLKRFMSLA  120 (176)
Q Consensus        80 ~~~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~---------------------------------------~~~~~l~~l~  120 (176)
                      +++...+..++.++|+||||+++|++.++..                                       .++..+.+++
T Consensus       180 apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  259 (284)
T cd05079         180 APECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPEEVYQLM  259 (284)
T ss_pred             CHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcCccCCCCCCCCHHHHHHH
Confidence            3333445678889999999999999976321                                       1235688999


Q ss_pred             HhhcccCCCCCCCHHHHHHHHHhh
Q 044320          121 LKYCEDETKARPSMLEVARQLENI  144 (176)
Q Consensus       121 ~~~~~~~p~~Rp~~~~i~~~l~~~  144 (176)
                      .+||+.+|.+||++.++++.|+.+
T Consensus       260 ~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         260 RKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             HHHccCCcccCcCHHHHHHHHHhh
Confidence            999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.93  E-value=1.5e-25  Score=165.96  Aligned_cols=137  Identities=18%  Similarity=0.252  Sum_probs=111.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--Cccccceee-ec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIV-VK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~-~~   82 (176)
                      +..+++.++..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||.+.........  ...+...+. ++
T Consensus       100 ~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE  176 (267)
T cd08228         100 KRLIPERTVWKYFVQLCSAVEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPE  176 (267)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCCHHHEEEcCCCCEEECccccceeccchhHHHhcCCCCccccChh
Confidence            455899999999999999999999999   999999999999999999999999988765432211  122333333 33


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ......++.++|+||+|+++|++.++..||                           +..+.+++.+||..+|.+||++.
T Consensus       177 ~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~  256 (267)
T cd08228         177 RIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIG  256 (267)
T ss_pred             hhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCCcccCcCHH
Confidence            344667788999999999999998766553                           13488999999999999999999


Q ss_pred             HHHHHHHhhh
Q 044320          136 EVARQLENIS  145 (176)
Q Consensus       136 ~i~~~l~~~~  145 (176)
                      ++++.|+++.
T Consensus       257 ~vl~~~~~~~  266 (267)
T cd08228         257 YVHQIAKQMH  266 (267)
T ss_pred             HHHHHHHHhc
Confidence            9999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.93  E-value=8.4e-26  Score=177.99  Aligned_cols=140  Identities=20%  Similarity=0.236  Sum_probs=121.5

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC----cccccee
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING----VVGHVSI   79 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~----~~~~~~~   79 (176)
                      +++..|+..+...++.||+.+|+|||+..   +|||||..+|||+.+...+|++|||+++......++.    .....|.
T Consensus       483 ~nk~sL~l~tL~ly~~Qi~talaYLeSkr---fVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWm  559 (974)
T KOG4257|consen  483 QNKDSLPLRTLTLYCYQICTALAYLESKR---FVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWM  559 (974)
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHHhhc---hhhhhhhhhheeecCcceeeecccchhhhccccchhhccccccceeec
Confidence            45677999999999999999999999998   9999999999999999999999999999877766443    3345677


Q ss_pred             eecCCCCCCCCcccchhhHhHHHHHH-------------------------hccChHHHHHHHHHHHhhcccCCCCCCCH
Q 044320           80 VVKGTHTQQLTEKSDIYGLGIACLYM-------------------------GLYSFEYLKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        80 ~~~~~~~~~~~~~~Dv~s~G~~l~~l-------------------------~~~~~~~~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      .++.....+|++++|||.|||.+||+                         +..++.++..+..++.+||..+|.+||.|
T Consensus       560 aPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGeRlP~P~nCPp~LYslmskcWayeP~kRPrf  639 (974)
T KOG4257|consen  560 APESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIENGERLPCPPNCPPALYSLMSKCWAYEPSKRPRF  639 (974)
T ss_pred             CccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceEEEecCCCCCCCCCCCChHHHHHHHHHhccCcccCCcH
Confidence            78888899999999999999999998                         23333345679999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 044320          135 LEVARQLENISS  146 (176)
Q Consensus       135 ~~i~~~l~~~~~  146 (176)
                      .++...|..+..
T Consensus       640 tei~~~lsdv~q  651 (974)
T KOG4257|consen  640 TEIKAILSDVLQ  651 (974)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887766

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.93  E-value=2.5e-25  Score=165.79  Aligned_cols=134  Identities=18%  Similarity=0.312  Sum_probs=108.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceee-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIV-   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~-   80 (176)
                      ...+++.++..++.|++.|+.|+|+.+   ++|+||+|+||+++.++.++++|||.+........    ....+...+. 
T Consensus       116 ~~~l~~~~~~~~~~~i~~~l~~lH~~~---i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~a  192 (280)
T cd05049         116 MGELTLSQLLQIAVQIASGMVYLASQH---FVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMP  192 (280)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhCC---eeccccccceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecC
Confidence            456899999999999999999999999   99999999999999999999999999865432211    1111222333 


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+......++.++|+||+|+++|++.+ +..||                        +..+.+++.+||..+|.+||++.
T Consensus       193 PE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~  272 (280)
T cd05049         193 PESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECITQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIK  272 (280)
T ss_pred             hhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCCCHH
Confidence            343456778999999999999999987 66654                        23578999999999999999999


Q ss_pred             HHHHHHH
Q 044320          136 EVARQLE  142 (176)
Q Consensus       136 ~i~~~l~  142 (176)
                      ++++.|+
T Consensus       273 eil~~l~  279 (280)
T cd05049         273 DIHERLQ  279 (280)
T ss_pred             HHHHHhh
Confidence            9999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.93  E-value=1.3e-25  Score=173.67  Aligned_cols=130  Identities=22%  Similarity=0.181  Sum_probs=106.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecC-CC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKG-TH   85 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~-~~   85 (176)
                      .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++....... ....+...+.+|+ ..
T Consensus       122 ~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~  198 (364)
T cd07875         122 ELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVIL  198 (364)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhCC---eecCCCCHHHEEECCCCcEEEEeCCCccccCCCCcccCCcccCCcCCHHHHh
Confidence            4788899999999999999999999   99999999999999999999999999976543321 1223344444444 34


Q ss_pred             CCCCCcccchhhHhHHHHHHhccChHHH----------------------------------------------------
Q 044320           86 TQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------------------------------  113 (176)
Q Consensus        86 ~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------------------------------  113 (176)
                      +..++.++|||||||++|+|.++..+|.                                                    
T Consensus       199 ~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (364)
T cd07875         199 GMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDV  278 (364)
T ss_pred             CCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCccc
Confidence            6778899999999999999988765541                                                    


Q ss_pred             -------------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 -------------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 -------------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                   ..+.+++.+|+..||.+|||+.++++.
T Consensus       279 ~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~h  318 (364)
T cd07875         279 LFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  318 (364)
T ss_pred             cccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence                         235689999999999999999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.93  E-value=3.7e-25  Score=167.86  Aligned_cols=139  Identities=19%  Similarity=0.234  Sum_probs=111.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Ccccc-ceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGH-VSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~-~~~~~   81 (176)
                      ..+++.++..++.|++.||.|+|+.+   ++|+||||+||+++.++.++++|||.++........    ...+. .+.++
T Consensus       129 ~~l~~~~~~~~~~qi~~aL~~lH~~g---i~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  205 (314)
T cd05099         129 EQLSFKDLVSCAYQVARGMEYLESRR---CIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAP  205 (314)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHCC---eeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCH
Confidence            46899999999999999999999999   999999999999999999999999999765432211    11111 23333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||+++|++.+ +..||                        +..+.+++.+||..+|++||++.+
T Consensus       206 E~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~  285 (314)
T cd05099         206 EALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELFKLLREGHRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQ  285 (314)
T ss_pred             HHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHH
Confidence            33346678899999999999999976 43332                        235889999999999999999999


Q ss_pred             HHHHHHhhhhcC
Q 044320          137 VARQLENISSML  148 (176)
Q Consensus       137 i~~~l~~~~~~~  148 (176)
                      +++.|+++....
T Consensus       286 ll~~l~~~~~~~  297 (314)
T cd05099         286 LVEALDKVLAAV  297 (314)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.93  E-value=7e-26  Score=173.01  Aligned_cols=131  Identities=19%  Similarity=0.219  Sum_probs=107.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecC-C
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKG-T   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~-~   84 (176)
                      ...+++..+..++.|++.||+|||+++   ++||||||+||+++.++.++|+|||++........ ...|...+.+|+ .
T Consensus       112 ~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~-~~~gt~~y~aPE~~  187 (329)
T PTZ00263        112 AGRFPNDVAKFYHAELVLAFEYLHSKD---IIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTF-TLCGTPEYLAPEVI  187 (329)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHEEECCCCCEEEeeccCceEcCCCcc-eecCChhhcCHHHH
Confidence            456899999999999999999999999   99999999999999999999999999876544332 223444444444 4


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCC-----HHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPS-----MLE  136 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~-----~~~  136 (176)
                      ....++.++|||||||++|+|.++..||.                       ..+.+++.+||..+|.+||+     +.+
T Consensus       188 ~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~  267 (329)
T PTZ00263        188 QSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGRLKFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVAD  267 (329)
T ss_pred             cCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCcCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHH
Confidence            46677899999999999999998877652                       24778999999999999987     577


Q ss_pred             HHHH
Q 044320          137 VARQ  140 (176)
Q Consensus       137 i~~~  140 (176)
                      ++..
T Consensus       268 ll~h  271 (329)
T PTZ00263        268 VKNH  271 (329)
T ss_pred             HhcC
Confidence            6643

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.93  E-value=1.7e-25  Score=165.27  Aligned_cols=135  Identities=21%  Similarity=0.312  Sum_probs=109.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC---ccccc-eeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING---VVGHV-SIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~---~~~~~-~~~~   81 (176)
                      ...+++.+++.++.|++.||.|||+.+   ++|+||+|.||+++.++.++++|||.+..........   ..+.. +.++
T Consensus        96 ~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aP  172 (260)
T cd05070          96 GRALKLPNLVDMAAQVAAGMAYIERMN---YIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAP  172 (260)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCccceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccCh
Confidence            456899999999999999999999999   9999999999999999999999999987654332211   11222 3333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||+++|++.+ +..||                        +..+.+++.+|+..+|.+||++.+
T Consensus       173 E~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~  252 (260)
T cd05070         173 EAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYRMPCPQDCPISLHELMLQCWKKDPEERPTFEY  252 (260)
T ss_pred             HHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccCcccCcCHHH
Confidence            33346678889999999999999987 55443                        235789999999999999999999


Q ss_pred             HHHHHHh
Q 044320          137 VARQLEN  143 (176)
Q Consensus       137 i~~~l~~  143 (176)
                      +.+.|+.
T Consensus       253 l~~~l~~  259 (260)
T cd05070         253 LQSFLED  259 (260)
T ss_pred             HHHHHhc
Confidence            9998875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.93  E-value=2.4e-25  Score=166.42  Aligned_cols=134  Identities=22%  Similarity=0.312  Sum_probs=107.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceee-e
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIV-V   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~-~   81 (176)
                      ..+++.+++.++.|++.||.|+|+.+   ++|+||||+||+++.++.++++|||+++.......    ....+...+. +
T Consensus       119 ~~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (283)
T cd05090         119 SSLDHGDFLHIAIQIAAGMEYLSSHF---FVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPP  195 (283)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHhcC---eehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecCh
Confidence            45889999999999999999999999   99999999999999999999999999876533221    1111222233 3


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||+++|++.+ +..||                        +..+.+++.+||..+|++||++.+
T Consensus       196 E~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~  275 (283)
T cd05090         196 EAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFKD  275 (283)
T ss_pred             HHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHH
Confidence            33345678899999999999999987 55443                        235788999999999999999999


Q ss_pred             HHHHHHh
Q 044320          137 VARQLEN  143 (176)
Q Consensus       137 i~~~l~~  143 (176)
                      +.+.|..
T Consensus       276 i~~~l~~  282 (283)
T cd05090         276 IHTRLRS  282 (283)
T ss_pred             HHHHhhc
Confidence            9998863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.93  E-value=2e-25  Score=164.72  Aligned_cols=133  Identities=20%  Similarity=0.309  Sum_probs=106.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC---ccccceee-ec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING---VVGHVSIV-VK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~---~~~~~~~~-~~   82 (176)
                      ..+++.+++.++.|++.||.|||+.+   ++|+||+|.||+++.++.++++|||.++.........   ..+...+. ++
T Consensus        95 ~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe  171 (256)
T cd05113          95 KRFQPSQLLEMCKDVCEGMAYLESKQ---FIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPE  171 (256)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccCcceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHH
Confidence            46899999999999999999999999   9999999999999999999999999887544332111   11222233 33


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      ......++.++|+||||+++|++.+ +..||.                        ..+.+++.+||..+|.+||++.++
T Consensus       172 ~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l  251 (256)
T cd05113         172 VLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLRLYRPHLASEKVYAIMYSCWHEKAEERPTFQQL  251 (256)
T ss_pred             HHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHH
Confidence            3335668889999999999999987 555431                        257899999999999999999999


Q ss_pred             HHHHH
Q 044320          138 ARQLE  142 (176)
Q Consensus       138 ~~~l~  142 (176)
                      ++.|+
T Consensus       252 l~~~~  256 (256)
T cd05113         252 LSSIE  256 (256)
T ss_pred             HHhhC
Confidence            98763

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.93  E-value=2.7e-26  Score=175.59  Aligned_cols=135  Identities=22%  Similarity=0.281  Sum_probs=113.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-------CCCccccceeee
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-------INGVVGHVSIVV   81 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-------~~~~~~~~~~~~   81 (176)
                      |++.++++|++++..||+|||.+|   ||||||||.|+|++++|++||+|||++.......       ...+.|++.+.+
T Consensus       207 ls~~~Ar~ylrDvv~GLEYLH~Qg---iiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~A  283 (576)
T KOG0585|consen  207 LSEQQARKYLRDVVLGLEYLHYQG---IIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFA  283 (576)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcC---eeccccchhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccc
Confidence            899999999999999999999999   9999999999999999999999999987552211       224667777777


Q ss_pred             cCCCCC-----CCCcccchhhHhHHHHHHhccChHHHH-------------------------HHHHHHHhhcccCCCCC
Q 044320           82 KGTHTQ-----QLTEKSDIYGLGIACLYMGLYSFEYLK-------------------------RFMSLALKYCEDETKAR  131 (176)
Q Consensus        82 ~~~~~~-----~~~~~~Dv~s~G~~l~~l~~~~~~~~~-------------------------~l~~l~~~~~~~~p~~R  131 (176)
                      |+.-..     ..+.+.||||+||.||-++.|..||..                         .+.+++++++..||++|
T Consensus       284 PE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~l~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~R  363 (576)
T KOG0585|consen  284 PELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFELELFDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQR  363 (576)
T ss_pred             hHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchHHHHHHHHhcCcccCCCcccccHHHHHHHHHHhhcChhhe
Confidence            665422     235689999999999999999888753                         48899999999999999


Q ss_pred             CCHHHHHHHHHhhhh
Q 044320          132 PSMLEVARQLENISS  146 (176)
Q Consensus       132 p~~~~i~~~l~~~~~  146 (176)
                      .+..+|....-.-..
T Consensus       364 i~l~~ik~Hpwvt~~  378 (576)
T KOG0585|consen  364 ITLPDIKLHPWVTRD  378 (576)
T ss_pred             eehhhheecceeccC
Confidence            999999877665444

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.93  E-value=2.9e-25  Score=163.89  Aligned_cols=137  Identities=25%  Similarity=0.330  Sum_probs=109.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--Cccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~   82 (176)
                      .+..+++.+++.++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||.+.........  ...+...+.+|
T Consensus        97 ~~~~~~~~~~~~~~~~i~~al~~lH~~~---i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~P  173 (261)
T cd05148          97 EGQVLPVASLIDMACQVAEGMAYLEEQN---SIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAP  173 (261)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccCcceEEEcCCceEEEccccchhhcCCccccccCCCCceEecCH
Confidence            4457899999999999999999999999   999999999999999999999999998765432211  11122223333


Q ss_pred             -CCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 -GTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 -~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                       ......++.++|+||||+++|++.+ +..||                        +..+.+++.+||..+|.+||++.+
T Consensus       174 E~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~  253 (261)
T cd05148         174 EAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQITAGYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKA  253 (261)
T ss_pred             HHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHhCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHH
Confidence             3345678889999999999999987 55443                        135889999999999999999999


Q ss_pred             HHHHHHhh
Q 044320          137 VARQLENI  144 (176)
Q Consensus       137 i~~~l~~~  144 (176)
                      +.+.|+.+
T Consensus       254 l~~~L~~~  261 (261)
T cd05148         254 LREELDNI  261 (261)
T ss_pred             HHHHHhcC
Confidence            99999853

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.93  E-value=2e-25  Score=169.15  Aligned_cols=103  Identities=21%  Similarity=0.261  Sum_probs=81.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe----CCCCCeEEeecCCcccCCCCCC-----CCccccc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL----DSKFTPKVFDFEISRLAPVPNI-----NGVVGHV   77 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~----~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~   77 (176)
                      ..+++..+..++.|++.||.|||+.+   ++||||||+||++    +.++.++|+|||+++.......     ....+..
T Consensus       103 ~~l~~~~~~~i~~qi~~aL~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~  179 (317)
T cd07867         103 MQLPRSMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTF  179 (317)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhCC---EEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecc
Confidence            45899999999999999999999999   9999999999999    4567899999999976543221     1223344


Q ss_pred             eeeecCCC-C-CCCCcccchhhHhHHHHHHhccChHH
Q 044320           78 SIVVKGTH-T-QQLTEKSDIYGLGIACLYMGLYSFEY  112 (176)
Q Consensus        78 ~~~~~~~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~~  112 (176)
                      .+.+|+.. . ..++.++||||+||++|+|.++..+|
T Consensus       180 ~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f  216 (317)
T cd07867         180 WYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIF  216 (317)
T ss_pred             cccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCc
Confidence            45555543 3 45788999999999999998887654

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.93  E-value=1.9e-25  Score=166.41  Aligned_cols=132  Identities=23%  Similarity=0.327  Sum_probs=105.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccc-eeeec
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHV-SIVVK   82 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~-~~~~~   82 (176)
                      .+++..+..++.|++.||.|+|+.+   ++|+||||+||+++.++.++++|||+++........    ...+.. +.+++
T Consensus       115 ~~~~~~~~~~~~~l~~~l~~lH~~~---~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  191 (277)
T cd05062         115 PPSLKKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPE  191 (277)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChh
Confidence            4678899999999999999999998   999999999999999999999999998754322211    111122 33333


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      ......++.++|+||||+++|++.+ +..+|                        +..+.+++.+||+.+|++||++.++
T Consensus       192 ~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~  271 (277)
T cd05062         192 SLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEI  271 (277)
T ss_pred             HhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence            3346678899999999999999987 34332                        2347889999999999999999999


Q ss_pred             HHHHH
Q 044320          138 ARQLE  142 (176)
Q Consensus       138 ~~~l~  142 (176)
                      ++.|+
T Consensus       272 l~~l~  276 (277)
T cd05062         272 ISSIK  276 (277)
T ss_pred             HHHhh
Confidence            99886

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=6.6e-26  Score=171.93  Aligned_cols=126  Identities=18%  Similarity=0.166  Sum_probs=103.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+++   ++||||||+||+++.++.++++|||+++......  .....|...+.+|+
T Consensus        87 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  163 (312)
T cd05585          87 EGRFDLSRARFYTAELLCALENLHKFN---VIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPE  163 (312)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccccCCcccCCHH
Confidence            456899999999999999999999999   9999999999999999999999999987543221  12223444455544


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      . ....++.++||||+||++|+|.++..||.                       ..+.+++.+||..+|++||++
T Consensus       164 ~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~~~  238 (312)
T cd05585         164 LLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGY  238 (312)
T ss_pred             HHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHcCCCHHHcCCC
Confidence            4 46678899999999999999999888762                       247889999999999999864

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.93  E-value=2.3e-25  Score=166.39  Aligned_cols=133  Identities=19%  Similarity=0.264  Sum_probs=107.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccc-eeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHV-SIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~-~~~~   81 (176)
                      ..+++.+++.++.|++.|++|||+.+   ++|+||+|+||+++.++.++++|||++.........    ...+.. +.++
T Consensus       117 ~~l~~~~~~~~~~qi~~al~~LH~~~---i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  193 (280)
T cd05092         117 GQLTLGQMLAIASQIASGMVYLASLH---FVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPP  193 (280)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHCC---eecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCH
Confidence            45899999999999999999999999   999999999999999999999999998654332211    111112 3333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+|||||++|++.+ +..||                        +..+.+++.+||..+|.+||++.+
T Consensus       194 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~  273 (280)
T cd05092         194 ESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQGRELERPRTCPPEVYAIMQGCWQREPQQRMVIKD  273 (280)
T ss_pred             HHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCChhhCCCHHH
Confidence            33446778899999999999999987 55554                        235889999999999999999999


Q ss_pred             HHHHHH
Q 044320          137 VARQLE  142 (176)
Q Consensus       137 i~~~l~  142 (176)
                      +.+.|+
T Consensus       274 l~~~l~  279 (280)
T cd05092         274 IHSRLQ  279 (280)
T ss_pred             HHHHHh
Confidence            999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.93  E-value=3.6e-25  Score=163.86  Aligned_cols=136  Identities=21%  Similarity=0.304  Sum_probs=109.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC---ccccc-eeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING---VVGHV-SIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~---~~~~~-~~~~   81 (176)
                      ...+++..+..++.|++.||+|+|+.+   ++|+||+|+||+++.++.++++|||.+..........   ..+.. +.++
T Consensus        96 ~~~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~P  172 (262)
T cd05071          96 GKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP  172 (262)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccCcccEEEcCCCcEEeccCCceeeccccccccccCCcccceecCH
Confidence            346899999999999999999999998   9999999999999999999999999987654332211   11222 3333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||+++|++.+ +..||                        +..+.+++.+|++.+|++||++.+
T Consensus       173 E~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~  252 (262)
T cd05071         173 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEY  252 (262)
T ss_pred             hHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHH
Confidence            43446678899999999999999987 44332                        245889999999999999999999


Q ss_pred             HHHHHHhh
Q 044320          137 VARQLENI  144 (176)
Q Consensus       137 i~~~l~~~  144 (176)
                      +++.|+..
T Consensus       253 ~~~~l~~~  260 (262)
T cd05071         253 LQAFLEDY  260 (262)
T ss_pred             HHHHHHHh
Confidence            99999865

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.93  E-value=3.9e-25  Score=163.79  Aligned_cols=136  Identities=21%  Similarity=0.321  Sum_probs=109.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-C---Cccccc-eee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-N---GVVGHV-SIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~---~~~~~~-~~~   80 (176)
                      ...+++.+++.++.|++.|+.|||+.+   ++|+||+|+||+++.++.++++|||++........ .   ...+.. +.+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~Lh~~~---i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~  176 (266)
T cd05033         100 DGKFTVGQLVGMLRGIASGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTA  176 (266)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccC
Confidence            347899999999999999999999999   99999999999999999999999999887642111 1   111112 333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++|+||||+++|++.+ +..||                        +..+.+++.+||+.+|++||++.
T Consensus       177 Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~  256 (266)
T cd05033         177 PEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVEDGYRLPPPMDCPSALYQLMLDCWQKDRNERPTFS  256 (266)
T ss_pred             hhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHH
Confidence            333445678899999999999999876 54443                        24688999999999999999999


Q ss_pred             HHHHHHHhh
Q 044320          136 EVARQLENI  144 (176)
Q Consensus       136 ~i~~~l~~~  144 (176)
                      ++++.|+++
T Consensus       257 ei~~~l~~~  265 (266)
T cd05033         257 QIVSTLDKM  265 (266)
T ss_pred             HHHHHHHhh
Confidence            999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.93  E-value=4.1e-25  Score=163.69  Aligned_cols=131  Identities=16%  Similarity=0.226  Sum_probs=102.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCC-------eEEeecCCcccCCCCCCCCccccce
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFT-------PKVFDFEISRLAPVPNINGVVGHVS   78 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~-------~~l~dfg~~~~~~~~~~~~~~~~~~   78 (176)
                      ...+++..++.++.|++.||+|||+.+   ++||||||+||+++.++.       ++++|||.+........  ..+...
T Consensus        99 ~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~  173 (262)
T cd05077          99 SDVLTTPWKFKVAKQLASALSYLEDKD---LVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSRQE--CVERIP  173 (262)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhhCC---eECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCccc--cccccc
Confidence            456999999999999999999999999   999999999999976653       89999998865433221  122223


Q ss_pred             eeecCC-C-CCCCCcccchhhHhHHHHHHhc-cChHH----------------------HHHHHHHHHhhcccCCCCCCC
Q 044320           79 IVVKGT-H-TQQLTEKSDIYGLGIACLYMGL-YSFEY----------------------LKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        79 ~~~~~~-~-~~~~~~~~Dv~s~G~~l~~l~~-~~~~~----------------------~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      +.+|+. . ...++.++||||||+++|++.. +..|+                      ...+.+++.+||+.+|.+||+
T Consensus       174 y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp~  253 (262)
T cd05077         174 WIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEKERFYEGQCMLVTPSCKELADLMTHCMNYDPNQRPF  253 (262)
T ss_pred             ccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHHHHHHhcCccCCCCChHHHHHHHHHHcCCChhhCcC
Confidence            333443 3 4668889999999999999863 33332                      346789999999999999999


Q ss_pred             HHHHHHHH
Q 044320          134 MLEVARQL  141 (176)
Q Consensus       134 ~~~i~~~l  141 (176)
                      +.++++.+
T Consensus       254 ~~~il~~~  261 (262)
T cd05077         254 FRAIMRDI  261 (262)
T ss_pred             HHHHHHhc
Confidence            99998865

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.93  E-value=2.3e-25  Score=174.25  Aligned_cols=137  Identities=20%  Similarity=0.267  Sum_probs=110.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccc-eee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHV-SIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~-~~~   80 (176)
                      ...+++.++..++.|++.||+|||+.+   ++|+||||+||+++.++.++++|||+++.......    ....+.. +.+
T Consensus       231 ~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~a  307 (400)
T cd05105         231 SEGLTTLDLLSFTYQVARGMEFLASKN---CVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMA  307 (400)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEC
Confidence            456999999999999999999999999   99999999999999999999999999875433221    1112222 333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH-------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY-------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      ++......++.++||||||+++|++++ +..||                         +..+.+++.+||..+|++||++
T Consensus       308 PE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~  387 (400)
T cd05105         308 PESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKIKSGYRMAKPDHATQEVYDIMVKCWNSEPEKRPSF  387 (400)
T ss_pred             hhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHHHHhcCCCCCCCccCCHHHHHHHHHHCccCHhHCcCH
Confidence            443446778899999999999999875 43332                         2357899999999999999999


Q ss_pred             HHHHHHHHhhh
Q 044320          135 LEVARQLENIS  145 (176)
Q Consensus       135 ~~i~~~l~~~~  145 (176)
                      .++.+.|+++.
T Consensus       388 ~~l~~~l~~l~  398 (400)
T cd05105         388 LHLSDIVESLL  398 (400)
T ss_pred             HHHHHHHHHHc
Confidence            99999999764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.93  E-value=5.5e-26  Score=179.29  Aligned_cols=140  Identities=23%  Similarity=0.297  Sum_probs=118.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccc----cceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVG----HVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~----~~~~~~   81 (176)
                      +..++--..+.||.||+.|++||.+++   +|||||..+|+|+.++..+|+.|||+++.+....++...|    ..|.++
T Consensus       359 r~ev~avvLlyMAtQIsSaMeYLEkkn---FIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAP  435 (1157)
T KOG4278|consen  359 RSEVPAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP  435 (1157)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhccccccceEEeeccchhhhhcCCceecccCccCcccccCc
Confidence            344666678899999999999999999   9999999999999999999999999999988776654433    346667


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhcc-------------------------ChHHHHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGLY-------------------------SFEYLKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~~-------------------------~~~~~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +.+....|+.++|||+|||+|||+.+.                         +.-++..+.++|..||++.|.+||+|.+
T Consensus       436 EsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~LLEkgyRM~~PeGCPpkVYeLMraCW~WsPsDRPsFae  515 (1157)
T KOG4278|consen  436 ESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGLLEKGYRMDGPEGCPPKVYELMRACWNWSPSDRPSFAE  515 (1157)
T ss_pred             ccccccccccchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHHHhccccccCCCCCCHHHHHHHHHHhcCCcccCccHHH
Confidence            777788999999999999999998442                         2223457899999999999999999999


Q ss_pred             HHHHHHhhhhcC
Q 044320          137 VARQLENISSML  148 (176)
Q Consensus       137 i~~~l~~~~~~~  148 (176)
                      +-+.|+.+....
T Consensus       516 iHqafEtmf~~s  527 (1157)
T KOG4278|consen  516 IHQAFETMFSSS  527 (1157)
T ss_pred             HHHHHHHHhccc
Confidence            999999876543

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.93  E-value=4.4e-25  Score=163.42  Aligned_cols=137  Identities=18%  Similarity=0.255  Sum_probs=111.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeec-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVK-   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~-   82 (176)
                      +..+++.+++.++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||.+........  ....+...+.++ 
T Consensus       100 ~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape  176 (267)
T cd08229         100 KRLIPEKTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPE  176 (267)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEECcchhhhccccCCcccccccCCcCccCHH
Confidence            456899999999999999999999999   99999999999999999999999998876543221  112233333333 


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ......++.++|+||||+++|++.++..||                           ...+.+++.+||..+|.+||++.
T Consensus       177 ~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~  256 (267)
T cd08229         177 RIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDIT  256 (267)
T ss_pred             HhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcCCCCCCCcccccHHHHHHHHHhcCCCcccCCCHH
Confidence            334667788999999999999998776554                           23588999999999999999999


Q ss_pred             HHHHHHHhhh
Q 044320          136 EVARQLENIS  145 (176)
Q Consensus       136 ~i~~~l~~~~  145 (176)
                      ++.+.++++.
T Consensus       257 ~i~~~~~~~~  266 (267)
T cd08229         257 YVYDVAKRMH  266 (267)
T ss_pred             HHHHHHhhhc
Confidence            9999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.92  E-value=3.2e-25  Score=167.44  Aligned_cols=135  Identities=19%  Similarity=0.218  Sum_probs=108.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~~   82 (176)
                      ..+++.++..++.|++.||+|+|+.+   ++|+||+|+||+++.++.++++|||.++........    ...+...+.+|
T Consensus       136 ~~l~~~~~~~i~~~i~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  212 (302)
T cd05055         136 SFLTLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAP  212 (302)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eehhhhccceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCH
Confidence            34899999999999999999999999   999999999999999999999999998765432211    11122233333


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHH-------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEY-------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      + .....++.++||||+|+++|++.+ +..||                         +..+.+++.+||..+|++||++.
T Consensus       213 E~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~  292 (302)
T cd05055         213 ESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFK  292 (302)
T ss_pred             hhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHH
Confidence            3 446678889999999999999976 55443                         23577899999999999999999


Q ss_pred             HHHHHHHhh
Q 044320          136 EVARQLENI  144 (176)
Q Consensus       136 ~i~~~l~~~  144 (176)
                      ++++.|+++
T Consensus       293 ell~~l~~~  301 (302)
T cd05055         293 QIVQLIGKQ  301 (302)
T ss_pred             HHHHHHHhh
Confidence            999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.92  E-value=3.7e-25  Score=167.34  Aligned_cols=138  Identities=18%  Similarity=0.238  Sum_probs=110.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccc-cceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVG-HVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~-~~~~~~   81 (176)
                      ..+++.+++.++.|++.||+|+|+.+   ++|+||||+||+++.++.++++|||.+........    ....+ ..+.++
T Consensus       135 ~~l~~~~~~~~~~qi~~aL~~lH~~g---i~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aP  211 (307)
T cd05098         135 EQLSFKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAP  211 (307)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHCC---cccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeCh
Confidence            45899999999999999999999999   99999999999999999999999999875443211    11111 123333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||+|+++|+|.+ +..||                        +..+.+++.+||..+|..||++.+
T Consensus       212 E~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e  291 (307)
T cd05098         212 EALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQ  291 (307)
T ss_pred             HHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccChhhCcCHHH
Confidence            33446678899999999999999976 43332                        235789999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 044320          137 VARQLENISSM  147 (176)
Q Consensus       137 i~~~l~~~~~~  147 (176)
                      +++.|+++...
T Consensus       292 vl~~l~~~~~~  302 (307)
T cd05098         292 LVEDLDRILAL  302 (307)
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.92  E-value=1.2e-25  Score=171.36  Aligned_cols=131  Identities=19%  Similarity=0.248  Sum_probs=106.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++..++.++.|++.||.|||+++   ++||||||+||+++.++.++++|||++.......  .....|...+.+|+
T Consensus        89 ~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  165 (323)
T cd05595          89 ERVFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPE  165 (323)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEEcCCCCEEecccHHhccccCCCCccccccCCcCcCCcc
Confidence            456899999999999999999999999   9999999999999999999999999886532221  11223444444444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCC-----CH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARP-----SM  134 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp-----~~  134 (176)
                      . ....++.++|+|||||++|++.++..||.                       ..+.+++.+||..+|++|+     ++
T Consensus       166 ~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~  245 (323)
T cd05595         166 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDA  245 (323)
T ss_pred             cccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHccCCHHHhCCCCCCCH
Confidence            3 46778999999999999999998877652                       3578899999999999998     77


Q ss_pred             HHHHH
Q 044320          135 LEVAR  139 (176)
Q Consensus       135 ~~i~~  139 (176)
                      .++++
T Consensus       246 ~~~l~  250 (323)
T cd05595         246 KEVME  250 (323)
T ss_pred             HHHHc
Confidence            77765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.92  E-value=1.7e-25  Score=173.48  Aligned_cols=132  Identities=19%  Similarity=0.208  Sum_probs=105.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~   82 (176)
                      ...+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||++........   ....+..++.+|
T Consensus        97 ~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aP  173 (372)
T cd07853          97 PQPLSSDHVKVFLYQILRGLKYLHSAG---ILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAP  173 (372)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChHHEEECCCCCEEeccccceeecccCccccCCCCCcCCCcCCH
Confidence            456899999999999999999999999   99999999999999999999999999876433221   112233344444


Q ss_pred             CCC-C-CCCCcccchhhHhHHHHHHhccChHH------------------------------------------------
Q 044320           83 GTH-T-QQLTEKSDIYGLGIACLYMGLYSFEY------------------------------------------------  112 (176)
Q Consensus        83 ~~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------------------------  112 (176)
                      +.. + ..++.++||||+||++|+|.++..+|                                                
T Consensus       174 E~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (372)
T cd07853         174 EILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVL  253 (372)
T ss_pred             HHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHh
Confidence            433 2 45788999999999999998877544                                                


Q ss_pred             -------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 -------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 -------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                             ...+.+++.+|+..+|++||++.++++.
T Consensus       254 ~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  288 (372)
T cd07853         254 YTLSSQATHEAVHLLCRMLVFDPDKRISAADALAH  288 (372)
T ss_pred             cccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcC
Confidence                   1245689999999999999999999864

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.92  E-value=1.5e-25  Score=171.18  Aligned_cols=132  Identities=19%  Similarity=0.235  Sum_probs=107.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||+|||+++   ++||||||+||+++.++.++|+|||+++......  .....|...+.+|+
T Consensus        89 ~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE  165 (328)
T cd05593          89 ERVFSEDRTRFYGAEIVSALDYLHSGK---IVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPE  165 (328)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecccCHHHeEECCCCcEEEecCcCCccCCCcccccccccCCcCccChh
Confidence            456899999999999999999999999   9999999999999999999999999987533221  11223444455444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCC-----CH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARP-----SM  134 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp-----~~  134 (176)
                      . ....++.++||||+||++|++.++..||.                       ..+.+++.+||..+|.+|+     ++
T Consensus       166 ~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~  245 (328)
T cd05593         166 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEDIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDA  245 (328)
T ss_pred             hhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHHHHHHHhccCCccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCH
Confidence            4 46678899999999999999999887762                       3578899999999999997     78


Q ss_pred             HHHHHH
Q 044320          135 LEVARQ  140 (176)
Q Consensus       135 ~~i~~~  140 (176)
                      .++++.
T Consensus       246 ~~il~h  251 (328)
T cd05593         246 KEIMRH  251 (328)
T ss_pred             HHHhcC
Confidence            888754

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.92  E-value=2.8e-25  Score=177.43  Aligned_cols=131  Identities=14%  Similarity=0.150  Sum_probs=107.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~   81 (176)
                      ...+++.++..++.|++.||.|+|+.+   ++||||||+||+++.++.++|+|||+++......    .....|...+.+
T Consensus       163 ~~~l~~~~~~~i~~qi~~aL~~lH~~~---ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~a  239 (478)
T PTZ00267        163 HLPFQEYEVGLLFYQIVLALDEVHSRK---MMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLA  239 (478)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---EEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccC
Confidence            456899999999999999999999999   9999999999999999999999999997654322    112234555555


Q ss_pred             cCC-CCCCCCcccchhhHhHHHHHHhccChHHH------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      |+. ....++.++|||||||++|+|.++..||.                        ..+.+++.+||..+|++||++.+
T Consensus       240 PE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~  319 (478)
T PTZ00267        240 PELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYDPFPCPVSSGMKALLDPLLSKNPALRPTTQQ  319 (478)
T ss_pred             HhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHH
Confidence            544 46678999999999999999988766542                        35788999999999999999998


Q ss_pred             HHH
Q 044320          137 VAR  139 (176)
Q Consensus       137 i~~  139 (176)
                      ++.
T Consensus       320 ~l~  322 (478)
T PTZ00267        320 LLH  322 (478)
T ss_pred             HHh
Confidence            864

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.92  E-value=4.1e-26  Score=175.43  Aligned_cols=134  Identities=23%  Similarity=0.295  Sum_probs=117.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeee
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVV   81 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~   81 (176)
                      .++..|+++.+.+++.|++.|+.|||+..   |+|||||+.||+++.++.++++|||+++.+....  .....|++++..
T Consensus        98 ~k~~~f~E~~i~~~~~Q~~~av~ylH~~~---iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~Ymc  174 (426)
T KOG0589|consen   98 QKGVLFPEERILKWFVQILLAVNYLHENR---VLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSLASTVVGTPYYMC  174 (426)
T ss_pred             HhhccccHHHHHHHHHHHHHHHHHHHhhh---hhcccchhhhhhccccCceeecchhhhhhcCCchhhhheecCCCcccC
Confidence            34678999999999999999999999888   9999999999999999999999999999988764  334567777776


Q ss_pred             cCC-CCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      ++. .+.+|+.++|+||+||++|||.+-...|                        ..++..++..|+..+|+.||++.+
T Consensus       175 PEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~~~~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~  254 (426)
T KOG0589|consen  175 PEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINRGLYSPLPSMYSSELRSLVKSMLRKNPEHRPSALE  254 (426)
T ss_pred             HHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHHHHHHHhhccCCCCCccccHHHHHHHHHHhhcCCccCCCHHH
Confidence            665 4889999999999999999996666554                        346899999999999999999999


Q ss_pred             HHHH
Q 044320          137 VARQ  140 (176)
Q Consensus       137 i~~~  140 (176)
                      ++..
T Consensus       255 LL~~  258 (426)
T KOG0589|consen  255 LLRR  258 (426)
T ss_pred             HhhC
Confidence            8765

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.92  E-value=1.6e-25  Score=165.93  Aligned_cols=131  Identities=20%  Similarity=0.202  Sum_probs=107.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~~   84 (176)
                      ..++...+..+++|++.||+|||+++   |+||||||.|++++..|.+|++|||+++....+..  .....+.|+-+|+.
T Consensus       115 ~g~~~~~ik~~m~Qll~gl~~~H~~~---IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~~~yt~evvTlWYRaPEv  191 (323)
T KOG0594|consen  115 QGLPPRLIKSFMRQLLRGLAFLHSHG---ILHRDLKPQNLLISSSGVLKLADFGLARAFSIPMRTYTPEVVTLWYRAPEV  191 (323)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC---eecccCCcceEEECCCCcEeeeccchHHHhcCCcccccccEEEeeccCHHH
Confidence            45777899999999999999999999   99999999999999999999999999987664443  33445556666655


Q ss_pred             C--CCCCCcccchhhHhHHHHHHhccChHHH-------------------------------------------------
Q 044320           85 H--TQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------------------------------  113 (176)
Q Consensus        85 ~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------------------------------  113 (176)
                      .  ...|++..||||+||++.||.++..-|+                                                 
T Consensus       192 LlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~  271 (323)
T KOG0594|consen  192 LLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSIL  271 (323)
T ss_pred             hcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhc
Confidence            4  4479999999999999999944443332                                                 


Q ss_pred             ----HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 ----KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 ----~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                          ....+++.++++.+|++|.|+..+++.
T Consensus       272 ~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h  302 (323)
T KOG0594|consen  272 PKLDPDGIELLSKLLQYDPAKRISAKGALTH  302 (323)
T ss_pred             cccCccHHHHHHHHhccCcccCcCHHHHhcC
Confidence                136788999999999999999988876

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.92  E-value=2.8e-25  Score=163.62  Aligned_cols=133  Identities=20%  Similarity=0.275  Sum_probs=107.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Cccccceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVGHVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~~   81 (176)
                      ..+++..++.++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++.........     ...+...+.+
T Consensus        92 ~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~  168 (257)
T cd05040          92 GHFLISTLCDYAVQIANGMRYLESKR---FIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCA  168 (257)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhCC---ccccccCcccEEEecCCEEEeccccccccccccccceecccCCCCCceecC
Confidence            56899999999999999999999999   999999999999999999999999998765442211     1112222333


Q ss_pred             -cCCCCCCCCcccchhhHhHHHHHHhc-cChHH-------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           82 -KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY-------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        82 -~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                       +......++.++|+||||+++|+|.+ +..||                         +..+.+++.+||..+|++||++
T Consensus       169 pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  248 (257)
T cd05040         169 PESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRPTF  248 (257)
T ss_pred             HHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCcCCCCccCCHHHHHHHHHHCCCCcccCCCH
Confidence             33446678889999999999999986 55543                         2457889999999999999999


Q ss_pred             HHHHHHHH
Q 044320          135 LEVARQLE  142 (176)
Q Consensus       135 ~~i~~~l~  142 (176)
                      .++++.|.
T Consensus       249 ~~~~~~l~  256 (257)
T cd05040         249 AALREFLP  256 (257)
T ss_pred             HHHHHHhc
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.92  E-value=3e-25  Score=169.84  Aligned_cols=132  Identities=20%  Similarity=0.310  Sum_probs=105.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKG-   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~-   83 (176)
                      ...+++..+..++.|++.||.|||. .+   ++|+||||+||+++.++.++++|||++............+...+.+|+ 
T Consensus        97 ~~~~~~~~~~~~~~~l~~~l~~lH~~~~---ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~y~aPE~  173 (333)
T cd06650          97 AGRIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPER  173 (333)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhcCC---EEecCCChhhEEEcCCCCEEEeeCCcchhhhhhccccCCCCccccCHHH
Confidence            3468899999999999999999997 46   999999999999999999999999998765433322333444444444 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHH---------------------------------------------------
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------------------  112 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------------------  112 (176)
                      ..+..++.++|+|||||++|++.++..||                                                   
T Consensus       174 ~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (333)
T cd06650         174 LQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFE  253 (333)
T ss_pred             hcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhhhhcccccccccHHH
Confidence            34567889999999999999998876543                                                   


Q ss_pred             ------------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 ------------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 ------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                        ..++.+++.+||..+|++||++.++++.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h  299 (333)
T cd06650         254 LLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMVH  299 (333)
T ss_pred             HHHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhhC
Confidence                              1346789999999999999999999654

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=1.4e-25  Score=171.45  Aligned_cols=131  Identities=20%  Similarity=0.153  Sum_probs=108.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecC-C
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKG-T   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~-~   84 (176)
                      ...+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||++....... ....|...+.+|+ .
T Consensus        95 ~~~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~-~~~~gt~~y~aPE~~  170 (333)
T cd05600          95 LGVLSEDHARFYMAEMFEAVDALHELG---YIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYA-NSVVGSPDYMAPEVL  170 (333)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCCEEEEeCcCCccccccc-CCcccCccccChhHh
Confidence            456899999999999999999999999   9999999999999999999999999987654322 2233444444444 3


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH-------------------------------HHHHHHHHHhhcccCCCCCCC
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------LKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      ....++.++||||+||++|+|.++..||                               ...+.+++.+|+..+|.+||+
T Consensus       171 ~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s  250 (333)
T cd05600         171 RGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGS  250 (333)
T ss_pred             cCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhccccccCCCCCccccccCHHHHHHHHHHhhChhhhcCC
Confidence            4667899999999999999998877664                               234778999999999999999


Q ss_pred             HHHHHHH
Q 044320          134 MLEVARQ  140 (176)
Q Consensus       134 ~~~i~~~  140 (176)
                      +.++++.
T Consensus       251 ~~~ll~h  257 (333)
T cd05600         251 LEDIKNH  257 (333)
T ss_pred             HHHHHhC
Confidence            9999865

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.92  E-value=9.8e-26  Score=177.80  Aligned_cols=106  Identities=22%  Similarity=0.192  Sum_probs=90.9

Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC--CCeEEeecCCcccCCCCCCCCcccccee
Q 044320            2 TSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK--FTPKVFDFEISRLAPVPNINGVVGHVSI   79 (176)
Q Consensus         2 ~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~--~~~~l~dfg~~~~~~~~~~~~~~~~~~~   79 (176)
                      +.++...|+...++.|+.||+.||.+||..+   |||+||||+|||+..-  ..+||+|||.+......-+.+.....|.
T Consensus       279 K~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~---IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vytYiQSRfYR  355 (586)
T KOG0667|consen  279 KNNKFRGLSLPLVRKFAQQILTALLFLHELG---IIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVYTYIQSRFYR  355 (586)
T ss_pred             HhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCChhheeeccCCcCceeEEecccccccCCcceeeeeccccc
Confidence            3456677999999999999999999999999   9999999999999543  4799999999988777666666666667


Q ss_pred             eecCCCCCCCCcccchhhHhHHHHHHhccCh
Q 044320           80 VVKGTHTQQLTEKSDIYGLGIACLYMGLYSF  110 (176)
Q Consensus        80 ~~~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~  110 (176)
                      +|+.+.+.+|+.+.|||||||+++||.+|.+
T Consensus       356 APEVILGlpY~~~IDmWSLGCIlAEL~tG~P  386 (586)
T KOG0667|consen  356 APEVILGLPYDTAIDMWSLGCILAELFTGEP  386 (586)
T ss_pred             cchhhccCCCCCccceeehhhhHHhHhcCcc
Confidence            7777789999999999999999999955543

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.92  E-value=4.9e-25  Score=166.42  Aligned_cols=140  Identities=20%  Similarity=0.316  Sum_probs=111.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Ccccc-ceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGH-VSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~-~~~~   80 (176)
                      ...+++..+..++.|++.||.|||+++   ++|+||||+||+++.++.++++|||+++........    ...+. .+.+
T Consensus       103 ~~~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~  179 (303)
T cd05110         103 KDNIGSQLLLNWCVQIAKGMMYLEERR---LVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMA  179 (303)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHhhcC---eeccccccceeeecCCCceEEccccccccccCcccccccCCCccccccCC
Confidence            346899999999999999999999999   999999999999999999999999999765432211    11111 2333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++...+..++.++||||||+++|++.+ +..||.                        ..+.+++..||..+|++||++.
T Consensus       180 PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~  259 (303)
T cd05110         180 LECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGERLPQPPICTIDVYMVMVKCWMIDADSRPKFK  259 (303)
T ss_pred             HHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence            444456778899999999999999876 444431                        2467889999999999999999


Q ss_pred             HHHHHHHhhhhcC
Q 044320          136 EVARQLENISSML  148 (176)
Q Consensus       136 ~i~~~l~~~~~~~  148 (176)
                      ++++.|..+....
T Consensus       260 ~l~~~l~~~~~~~  272 (303)
T cd05110         260 ELAAEFSRMARDP  272 (303)
T ss_pred             HHHHHHHHHHhch
Confidence            9999999876653

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.92  E-value=5.1e-25  Score=163.26  Aligned_cols=136  Identities=21%  Similarity=0.292  Sum_probs=108.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC-----ccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING-----VVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~-----~~~~~~~~   80 (176)
                      ...+++.++..++.|++.|++|+|+.+   ++|+|++|+||+++.++.++++|||++..........     ......+.
T Consensus       101 ~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~  177 (268)
T cd05063         101 DGEFSSYQLVGMLRGIAAGMKYLSDMN---YVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWT  177 (268)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceec
Confidence            456899999999999999999999999   9999999999999999999999999987553322111     01111233


Q ss_pred             ecC-CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKG-THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +|+ .....++.++|+||||+++|++++ +..||                        +..+.+++.+||..+|..||++
T Consensus       178 ~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~  257 (268)
T cd05063         178 APEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAINDGFRLPAPMDCPSAVYQLMLQCWQQDRARRPRF  257 (268)
T ss_pred             CHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCH
Confidence            333 345677899999999999999876 66554                        2357899999999999999999


Q ss_pred             HHHHHHHHhh
Q 044320          135 LEVARQLENI  144 (176)
Q Consensus       135 ~~i~~~l~~~  144 (176)
                      .++++.|+++
T Consensus       258 ~~i~~~l~~~  267 (268)
T cd05063         258 VDIVNLLDKL  267 (268)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.92  E-value=5e-25  Score=163.64  Aligned_cols=134  Identities=24%  Similarity=0.348  Sum_probs=107.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Cccccceeeec
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVGHVSIVVK   82 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~~~   82 (176)
                      .+++..+..++.|++.||+|+|+.+   ++|+||||+||+++.++.++++|||+++........     ......+..++
T Consensus       109 ~l~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe  185 (273)
T cd05074         109 TLPLQTLVRFMIDIASGMEYLSSKN---FIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALE  185 (273)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCC---EeecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHh
Confidence            5889999999999999999999999   999999999999999999999999998765432211     11112233344


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      ......++.++|+||||+++|++.+ +..+|                        +..+.+++.+||+.+|..||++.++
T Consensus       186 ~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~  265 (273)
T cd05074         186 SLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIKGNRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHL  265 (273)
T ss_pred             HHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence            4446667889999999999999976 43332                        2468899999999999999999999


Q ss_pred             HHHHHhh
Q 044320          138 ARQLENI  144 (176)
Q Consensus       138 ~~~l~~~  144 (176)
                      ++.|+++
T Consensus       266 ~~~l~~~  272 (273)
T cd05074         266 RDQLELI  272 (273)
T ss_pred             HHHHHhh
Confidence            9999865

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.92  E-value=5.1e-25  Score=162.31  Aligned_cols=132  Identities=21%  Similarity=0.282  Sum_probs=105.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Ccccc-ceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGH-VSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~-~~~~~~   82 (176)
                      ..++++.++.++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||.+.........   ...+. .+.+++
T Consensus        95 ~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE  171 (256)
T cd05114          95 GKLSKDMLLSMCQDVCEGMEYLERNS---FIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPE  171 (256)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChh
Confidence            45899999999999999999999999   999999999999999999999999988754322211   11111 233333


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      ......++.++|+||||+++|++.+ +..||.                        ..+.+++.+||..+|.+||++.++
T Consensus       172 ~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l  251 (256)
T cd05114         172 VFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAEL  251 (256)
T ss_pred             hcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHH
Confidence            3445678889999999999999988 555431                        237889999999999999999999


Q ss_pred             HHHH
Q 044320          138 ARQL  141 (176)
Q Consensus       138 ~~~l  141 (176)
                      ++.|
T Consensus       252 ~~~l  255 (256)
T cd05114         252 LRAI  255 (256)
T ss_pred             HHhh
Confidence            9876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.92  E-value=5.7e-25  Score=165.41  Aligned_cols=132  Identities=24%  Similarity=0.342  Sum_probs=105.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC----ccccc-eeeec
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING----VVGHV-SIVVK   82 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~----~~~~~-~~~~~   82 (176)
                      .+++..++.++.|++.||+|||+.+   ++|+||||+||+++.++.++++|||++..........    ..+.. +.+++
T Consensus       125 ~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  201 (295)
T cd05097         125 SVSIANLLYMAVQIASGMKYLASLN---FVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWE  201 (295)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhcC---eeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChh
Confidence            4789999999999999999999999   9999999999999999999999999987643322111    11122 33333


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhc--cChHH-------------------------------HHHHHHHHHhhcccCCC
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGL--YSFEY-------------------------------LKRFMSLALKYCEDETK  129 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~--~~~~~-------------------------------~~~l~~l~~~~~~~~p~  129 (176)
                      ......++.++|+||||+++|++.+  +..+|                               +..+.+++.+||..+|.
T Consensus       202 ~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~  281 (295)
T cd05097         202 SILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIK  281 (295)
T ss_pred             hhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHHHHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCch
Confidence            3446678999999999999999965  22222                               23478999999999999


Q ss_pred             CCCCHHHHHHHHH
Q 044320          130 ARPSMLEVARQLE  142 (176)
Q Consensus       130 ~Rp~~~~i~~~l~  142 (176)
                      +||++.++++.|+
T Consensus       282 ~RPs~~~i~~~l~  294 (295)
T cd05097         282 DRPTFNKIHHFLR  294 (295)
T ss_pred             hCcCHHHHHHHHh
Confidence            9999999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.92  E-value=2.4e-25  Score=181.74  Aligned_cols=135  Identities=20%  Similarity=0.263  Sum_probs=113.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCc------cccceeee
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV------VGHVSIVV   81 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~------~~~~~~~~   81 (176)
                      .|+..+.+.+++|||.|++||++..   +|||||..+|||+..+..+|++|||+++.......+..      ....|.++
T Consensus       414 ~L~~~dLlsfa~QIa~GMe~L~~~~---~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmAp  490 (609)
T KOG0200|consen  414 ALTTKDLLSFAYQIANGMEYLASVP---CVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAP  490 (609)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHhhCC---ccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCH
Confidence            4999999999999999999999998   99999999999999999999999999997655443321      23446666


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhccC-hHH-------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGLYS-FEY-------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~~~-~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      +......|+.++||||||+++||+.+.. .|+                         ..++.++|+.||+.+|++||+|.
T Consensus       491 Esl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l~~~l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~  570 (609)
T KOG0200|consen  491 ESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEELLEFLKEGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFS  570 (609)
T ss_pred             HHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHH
Confidence            6666889999999999999999984311 111                         23578999999999999999999


Q ss_pred             HHHHHHHhhh
Q 044320          136 EVARQLENIS  145 (176)
Q Consensus       136 ~i~~~l~~~~  145 (176)
                      ++++.++...
T Consensus       571 ~~~~~~~~~l  580 (609)
T KOG0200|consen  571 ECVEFFEKHL  580 (609)
T ss_pred             HHHHHHHHHH
Confidence            9999999854

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.92  E-value=1.7e-25  Score=171.00  Aligned_cols=131  Identities=20%  Similarity=0.150  Sum_probs=106.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC---CCCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN---INGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~   82 (176)
                      +..++++++..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++......   .....|...+.+|
T Consensus        99 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aP  175 (332)
T cd05614          99 RDNFSEDEVRFYSGEIILALEHLHKLG---IVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAP  175 (332)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---cEecCCCHHHeEECCCCCEEEeeCcCCccccccCCCccccccCCccccCH
Confidence            456899999999999999999999999   9999999999999999999999999987543222   1123355556555


Q ss_pred             CCC-C-CCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCC-
Q 044320           83 GTH-T-QQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARP-  132 (176)
Q Consensus        83 ~~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp-  132 (176)
                      +.. + ..++.++|||||||++|+|.++..||.                           ..+.+++.+||..+|++|| 
T Consensus       176 E~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~  255 (332)
T cd05614         176 EIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFPSFIGPEAQDLLHKLLRKDPKKRLG  255 (332)
T ss_pred             HHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcCCCHHHcCC
Confidence            543 2 346889999999999999998887762                           2367899999999999999 


Q ss_pred             ----CHHHHHH
Q 044320          133 ----SMLEVAR  139 (176)
Q Consensus       133 ----~~~~i~~  139 (176)
                          +++++++
T Consensus       256 ~~~~~~~~~l~  266 (332)
T cd05614         256 AGPQGASEIKE  266 (332)
T ss_pred             CCCCCHHHHHc
Confidence                6667764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.92  E-value=2e-25  Score=169.69  Aligned_cols=130  Identities=20%  Similarity=0.221  Sum_probs=106.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||+|||+.+   ++||||||+||+++.++.++|+|||+++......  .....|...+.+|+
T Consensus        90 ~~~~~~~~~~~~~~qi~~al~~LH~~~---ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE  166 (316)
T cd05592          90 SGRFDEARARFYAAEIICGLQFLHKKG---IIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPE  166 (316)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---EEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCccccccCCccccCHH
Confidence            456899999999999999999999999   9999999999999999999999999987543221  22233445555444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHH-HHH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSML-EVA  138 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~-~i~  138 (176)
                      . .+..++.++|+||+||++|+|.++..||.                       ..+.+++.+||..+|.+||++. +++
T Consensus       167 ~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05592         167 ILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILNDRPHFPRWISKEAKDCLSKLFERDPTKRLGVDGDIR  246 (316)
T ss_pred             HHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHH
Confidence            4 46678899999999999999998887752                       3578999999999999999875 443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1e-25  Score=175.98  Aligned_cols=143  Identities=22%  Similarity=0.296  Sum_probs=119.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC---CCCCCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV---PNINGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~---~~~~~~~~~~~~~~~   82 (176)
                      +..++..+.+.++.++|.||+|||+++   ++||||..+|+|++.++.+|++|||+++....   ..........|.+|+
T Consensus       256 ~~~v~~~ek~~~~~~AA~Gl~YLh~k~---~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPE  332 (474)
T KOG0194|consen  256 KKSLPTLEKLRFCYDAARGLEYLHSKN---CIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPE  332 (474)
T ss_pred             CCCCCHHHHHHHHHHHHhHHHHHHHCC---CcchhHhHHHheecCCCeEEeCccccccCCcceeeccccccCcceecChh
Confidence            346999999999999999999999999   99999999999999999999999999876431   111123445677777


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhc-cChHH-------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGL-YSFEY-------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      ......|+.++|||||||++||+.. +..|+                         +..+..++.+||..+|+.||+|.+
T Consensus       333 tl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~  412 (474)
T KOG0194|consen  333 TLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKNGYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMST  412 (474)
T ss_pred             hhccCccccccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhcCccCCCCCCCHHHHHHHHHHhccCChhhccCHHH
Confidence            7778899999999999999999855 23333                         345788999999999999999999


Q ss_pred             HHHHHHhhhhcCCCC
Q 044320          137 VARQLENISSMLPES  151 (176)
Q Consensus       137 i~~~l~~~~~~~~~~  151 (176)
                      +.+.|+.+.......
T Consensus       413 i~~~l~~~~~~~~~~  427 (474)
T KOG0194|consen  413 IKKKLEALEKKKEAF  427 (474)
T ss_pred             HHHHHHHHHhccccc
Confidence            999999998886643

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.92  E-value=1.9e-25  Score=169.98  Aligned_cols=126  Identities=17%  Similarity=0.208  Sum_probs=103.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++..+..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||+++......  .....|...+.+|+
T Consensus        90 ~~~l~~~~~~~~~~ql~~~L~~lH~~~---ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE  166 (320)
T cd05590          90 SRRFDEARARFYAAEITSALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPE  166 (320)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCcccccccCccccCHH
Confidence            457999999999999999999999999   9999999999999999999999999986532221  12233444454444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      . ....++.++|+||+||++|++.++..||.                       ..+.+++.+|+..+|++||++
T Consensus       167 ~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         167 ILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLSQDAVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             HHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcccCHHHCCCC
Confidence            3 46678889999999999999988887752                       247889999999999999997

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.92  E-value=1.8e-25  Score=170.14  Aligned_cols=132  Identities=17%  Similarity=0.213  Sum_probs=107.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++..+..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||++.......  .....|...+.+|+
T Consensus        90 ~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  166 (321)
T cd05591          90 SRKFDEPRSRFYAAEVTLALMFLHRHG---VIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPE  166 (321)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEeecccceecccCCccccccccCccccCHH
Confidence            456899999999999999999999999   9999999999999999999999999987533222  12223444454444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCC-------
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARP-------  132 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp-------  132 (176)
                      . ....++.++||||+|+++|+|.++..||                       ...+.+++.+|+..+|++||       
T Consensus       167 ~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~  246 (321)
T cd05591         167 ILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHDDVLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQG  246 (321)
T ss_pred             HHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCC
Confidence            3 4667889999999999999999888775                       24578899999999999999       


Q ss_pred             CHHHHHHH
Q 044320          133 SMLEVARQ  140 (176)
Q Consensus       133 ~~~~i~~~  140 (176)
                      ++.++++.
T Consensus       247 ~~~~~~~h  254 (321)
T cd05591         247 GEDAIKQH  254 (321)
T ss_pred             CHHHHhcC
Confidence            67777543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.92  E-value=4.8e-25  Score=165.55  Aligned_cols=133  Identities=23%  Similarity=0.336  Sum_probs=106.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC----ccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING----VVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~----~~~~~~~~~~   82 (176)
                      ..+++..++.++.|++.||+|||+.+   ++|+||||+||+++.++.++++|||+++.........    ..+...+.+|
T Consensus       125 ~~~~~~~~~~~~~~i~~al~~LH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  201 (296)
T cd05051         125 KSLSFSTLLYMATQIASGMRYLESLN---FVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAW  201 (296)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcC---ccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCH
Confidence            46899999999999999999999999   9999999999999999999999999987644332111    1122233333


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc--cChHH-------------------------------HHHHHHHHHhhcccCC
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL--YSFEY-------------------------------LKRFMSLALKYCEDET  128 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~--~~~~~-------------------------------~~~l~~l~~~~~~~~p  128 (176)
                      + .....++.++||||||+++|++.+  +..|+                               +.++.+++.+||+.+|
T Consensus       202 E~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p  281 (296)
T cd05051         202 ESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDE  281 (296)
T ss_pred             HHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcChHHHHHHHHhccccccccccCCCccCCCHHHHHHHHHHhccCh
Confidence            3 345678999999999999999865  22111                               2468999999999999


Q ss_pred             CCCCCHHHHHHHHH
Q 044320          129 KARPSMLEVARQLE  142 (176)
Q Consensus       129 ~~Rp~~~~i~~~l~  142 (176)
                      .+||++.++++.|+
T Consensus       282 ~~Rpt~~el~~~L~  295 (296)
T cd05051         282 EDRPTFREIHLFLQ  295 (296)
T ss_pred             hcCCCHHHHHHHhc
Confidence            99999999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.92  E-value=5.3e-25  Score=163.79  Aligned_cols=133  Identities=23%  Similarity=0.347  Sum_probs=106.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceee-e
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIV-V   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~-~   81 (176)
                      ..+++..++.++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||+++........    ...+...+. +
T Consensus       114 ~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  190 (277)
T cd05032         114 GPPTLQKFIQMAAEIADGMAYLAAKK---FVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAP  190 (277)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCH
Confidence            45789999999999999999999998   999999999999999999999999998754332211    111222233 3


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||+++|++.+ +..+|                        +..+.+++.+||..+|.+||++.+
T Consensus       191 E~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~  270 (277)
T cd05032         191 ESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVIDGGHLDLPENCPDKLLELMRMCWQYNPKMRPTFLE  270 (277)
T ss_pred             HHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHH
Confidence            33345678889999999999999986 44443                        245789999999999999999999


Q ss_pred             HHHHHH
Q 044320          137 VARQLE  142 (176)
Q Consensus       137 i~~~l~  142 (176)
                      +++.|+
T Consensus       271 l~~~l~  276 (277)
T cd05032         271 IVSSLK  276 (277)
T ss_pred             HHHHhc
Confidence            999886

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=2.9e-25  Score=168.80  Aligned_cols=131  Identities=24%  Similarity=0.266  Sum_probs=108.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC------CCcccccee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI------NGVVGHVSI   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~------~~~~~~~~~   79 (176)
                      ...+++..+.-|.++++.||.|||.+|   .||||+|+.|||++.+|.++|+|||++-.+...+.      ....|.+++
T Consensus       120 ~~Gl~E~~Ia~iLre~LkaL~YLH~~G---~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~w  196 (516)
T KOG0582|consen  120 PDGLEEASIATILREVLKALDYLHQNG---HIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCW  196 (516)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhcC---ceecccccccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccc
Confidence            345889999999999999999999999   99999999999999999999999998755443331      233566666


Q ss_pred             eecCC---CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------------HHHHHHHHhh
Q 044320           80 VVKGT---HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------------KRFMSLALKY  123 (176)
Q Consensus        80 ~~~~~---~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------------~~l~~l~~~~  123 (176)
                      ++|+.   .-..|+.++||||||+...|+..|-.||.                                 ..++.++..|
T Consensus       197 mAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~C  276 (516)
T KOG0582|consen  197 MAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIALC  276 (516)
T ss_pred             cChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHHH
Confidence            66665   26789999999999999999966666552                                 2478899999


Q ss_pred             cccCCCCCCCHHHHHH
Q 044320          124 CEDETKARPSMLEVAR  139 (176)
Q Consensus       124 ~~~~p~~Rp~~~~i~~  139 (176)
                      +..||.+|||++++++
T Consensus       277 L~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  277 LVKDPSKRPTASKLLK  292 (516)
T ss_pred             hhcCcccCCCHHHHhc
Confidence            9999999999998864

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.92  E-value=5.3e-25  Score=164.90  Aligned_cols=134  Identities=21%  Similarity=0.251  Sum_probs=106.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Ccc-ccceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVV-GHVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~-~~~~~~~   81 (176)
                      ..+++.+++.++.|++.||.|+|..+   ++|+||+|+||+++.++.++++|||++.........    ... ...+.++
T Consensus       125 ~~l~~~~~~~~~~~i~~aL~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  201 (288)
T cd05050         125 LPLSCTEQLCIAKQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPP  201 (288)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHhCC---eecccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCH
Confidence            45889999999999999999999999   999999999999999999999999988654322111    111 1122333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||+++|++.+ +..+|                        +.++.+++.+||..+|.+||++.+
T Consensus       202 E~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~e  281 (288)
T cd05050         202 ESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEVIYYVRDGNVLSCPDNCPLELYNLMRLCWSKLPSDRPSFAS  281 (288)
T ss_pred             HHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHH
Confidence            33446778899999999999999975 43332                        346889999999999999999999


Q ss_pred             HHHHHHh
Q 044320          137 VARQLEN  143 (176)
Q Consensus       137 i~~~l~~  143 (176)
                      +++.|++
T Consensus       282 l~~~l~~  288 (288)
T cd05050         282 INRILQR  288 (288)
T ss_pred             HHHHhhC
Confidence            9999874

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.92  E-value=5.6e-25  Score=162.47  Aligned_cols=136  Identities=21%  Similarity=0.311  Sum_probs=109.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Cccccc-eee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHV-SIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~-~~~   80 (176)
                      .+..+++.++..++.|++.||+|||+.+   ++|+||+|+||+++.++.++++|||++.........   ...+.. +.+
T Consensus        95 ~~~~~~~~~~~~i~~~i~~al~~LH~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~  171 (260)
T cd05067          95 EGIKLTINKLIDMAAQIAEGMAFIERKN---YIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTA  171 (260)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccCCcccccccC
Confidence            3456899999999999999999999999   999999999999999999999999998765422211   111122 233


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++|+||||+++|++.+ +..||.                        .++.+++.+||..+|++||+++
T Consensus       172 pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~  251 (260)
T cd05067         172 PEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYRMPRPDNCPEELYELMRLCWKEKPEERPTFE  251 (260)
T ss_pred             HHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHH
Confidence            333345667889999999999999987 665542                        3589999999999999999999


Q ss_pred             HHHHHHHh
Q 044320          136 EVARQLEN  143 (176)
Q Consensus       136 ~i~~~l~~  143 (176)
                      ++.+.|+.
T Consensus       252 ~l~~~l~~  259 (260)
T cd05067         252 YLRSVLED  259 (260)
T ss_pred             HHHHHhhc
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.92  E-value=2.2e-25  Score=169.36  Aligned_cols=130  Identities=18%  Similarity=0.232  Sum_probs=105.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCC--CCCCCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP--VPNINGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~--~~~~~~~~~~~~~~~~~   83 (176)
                      +..+++.++..++.|++.||+|||+++   ++||||||+||+++.++.++++|||+++...  ........|...+.+|+
T Consensus        90 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  166 (316)
T cd05620          90 KGRFDLYRATFYAAEIVCGLQFLHSKG---IIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPE  166 (316)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEeCccCCCeecccCCCceeccCCCcCccCHH
Confidence            456899999999999999999999999   9999999999999999999999999886432  11122233444454444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHH-HHH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSML-EVA  138 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~-~i~  138 (176)
                      . ....++.++|+||+||++|+|.++..||.                       .++.+++.+||..+|.+||++. ++.
T Consensus       167 ~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         167 ILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHYPRWITKESKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             HHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHH
Confidence            3 46678899999999999999998887752                       2477899999999999999975 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.92  E-value=1e-24  Score=166.80  Aligned_cols=139  Identities=17%  Similarity=0.242  Sum_probs=111.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccc-eeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHV-SIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~-~~~~   81 (176)
                      ..+++.+++.++.|++.||.|||..+   ++||||+|+||+++.++.++++|||+++........    ...+.. +.++
T Consensus       129 ~~l~~~~~~~~~~qi~~al~~LH~~g---ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  205 (334)
T cd05100         129 EQLTFKDLVSCAYQVARGMEYLASQK---CIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAP  205 (334)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHCC---eeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCH
Confidence            45889999999999999999999999   999999999999999999999999998765432211    111112 3333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||+++|++.+ +..+|                        +..+.+++.+||..+|.+||++.+
T Consensus       206 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~e  285 (334)
T cd05100         206 EALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQ  285 (334)
T ss_pred             HHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHH
Confidence            34446678889999999999999976 43332                        235788999999999999999999


Q ss_pred             HHHHHHhhhhcC
Q 044320          137 VARQLENISSML  148 (176)
Q Consensus       137 i~~~l~~~~~~~  148 (176)
                      +++.|+++....
T Consensus       286 ll~~l~~~~~~~  297 (334)
T cd05100         286 LVEDLDRVLTVT  297 (334)
T ss_pred             HHHHHHHHhhhc
Confidence            999999888544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.92  E-value=1.9e-25  Score=171.45  Aligned_cols=131  Identities=17%  Similarity=0.161  Sum_probs=107.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT-   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~-   84 (176)
                      +..+++..+..++.|++.||.|||+.+   ++||||||+||+++.++.++++|||++........ ...|...+.+|+. 
T Consensus       125 ~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~~~-~~~gt~~y~aPE~~  200 (340)
T PTZ00426        125 NKRFPNDVGCFYAAQIVLIFEYLQSLN---IVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTY-TLCGTPEYIAPEIL  200 (340)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEccCCCHHHEEECCCCCEEEecCCCCeecCCCcc-eecCChhhcCHHHH
Confidence            456899999999999999999999999   99999999999999999999999999876543322 2334444544444 


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCC-----CHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARP-----SMLE  136 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp-----~~~~  136 (176)
                      .+..++.++|+||+||++|+|.++..||.                       ..+.+++.+|++.+|++|+     ++++
T Consensus       201 ~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~  280 (340)
T PTZ00426        201 LNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEGIIYFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQN  280 (340)
T ss_pred             hCCCCCccccccchhhHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHH
Confidence            46668899999999999999998887762                       2478899999999999995     7888


Q ss_pred             HHHH
Q 044320          137 VARQ  140 (176)
Q Consensus       137 i~~~  140 (176)
                      +++.
T Consensus       281 ~~~h  284 (340)
T PTZ00426        281 VKEH  284 (340)
T ss_pred             HHcC
Confidence            7654

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.92  E-value=9.3e-25  Score=167.70  Aligned_cols=137  Identities=20%  Similarity=0.255  Sum_probs=109.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccc-eeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHV-SIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~-~~~~   81 (176)
                      ..+++..+..++.|++.||+|||+.+   ++||||||.||+++.++.++++|||++.........    ...+.. +.++
T Consensus       174 ~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  250 (343)
T cd05103         174 KVLTLEDLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP  250 (343)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECc
Confidence            45899999999999999999999999   999999999999999999999999998764322111    111112 3334


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH-------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY-------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      +......++.++|+||||+++|++.+ +..|+                         ...+.+++..||..+|++||++.
T Consensus       251 E~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~  330 (343)
T cd05103         251 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFS  330 (343)
T ss_pred             HHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHHHhccCCCCCCCCCCHHHHHHHHHHccCChhhCcCHH
Confidence            44456778899999999999999874 44332                         12578899999999999999999


Q ss_pred             HHHHHHHhhhh
Q 044320          136 EVARQLENISS  146 (176)
Q Consensus       136 ~i~~~l~~~~~  146 (176)
                      ++++.|+.+..
T Consensus       331 eil~~l~~~~~  341 (343)
T cd05103         331 ELVEHLGNLLQ  341 (343)
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.92  E-value=2.5e-25  Score=170.04  Aligned_cols=126  Identities=19%  Similarity=0.234  Sum_probs=102.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++..+..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++......  .....|...+.+|+
T Consensus        90 ~~~l~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE  166 (329)
T cd05618          90 QRKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPE  166 (329)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCccccccCCccccCHH
Confidence            457999999999999999999999999   9999999999999999999999999986532211  12223444454444


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHHH--------------------------------HHHHHHHHhhcccCCCC
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------------KRFMSLALKYCEDETKA  130 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------------~~l~~l~~~~~~~~p~~  130 (176)
                       ..+..++.++|+|||||++|+|.++..||.                                ..+.+++.+||..+|++
T Consensus       167 ~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dP~~  246 (329)
T cd05618         167 ILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKE  246 (329)
T ss_pred             HHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcCCHHH
Confidence             346778899999999999999999877762                                23568999999999999


Q ss_pred             CCCH
Q 044320          131 RPSM  134 (176)
Q Consensus       131 Rp~~  134 (176)
                      ||++
T Consensus       247 R~~~  250 (329)
T cd05618         247 RLGC  250 (329)
T ss_pred             cCCC
Confidence            9983

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.92  E-value=1.1e-24  Score=163.27  Aligned_cols=138  Identities=21%  Similarity=0.292  Sum_probs=108.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC----cccc-ceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING----VVGH-VSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~----~~~~-~~~~~   81 (176)
                      ..+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.++++|||+++.........    ..+. .+.++
T Consensus       114 ~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~p  190 (288)
T cd05061         114 PPPTLQEMIQMAAEIADGMAYLNAKK---FVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAP  190 (288)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---CcCCCCChheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCH
Confidence            44677889999999999999999999   9999999999999999999999999987543322111    1111 23334


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+|||||++||+.+ +..+|                        +..+.+++.+|++.+|++||++.+
T Consensus       191 E~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~  270 (288)
T cd05061         191 ESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLE  270 (288)
T ss_pred             HHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHH
Confidence            44446678899999999999999976 33322                        245889999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 044320          137 VARQLENISSM  147 (176)
Q Consensus       137 i~~~l~~~~~~  147 (176)
                      +++.|++....
T Consensus       271 ll~~l~~~~~~  281 (288)
T cd05061         271 IVNLLKDDLHP  281 (288)
T ss_pred             HHHHHHhhcCC
Confidence            99999976543

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.92  E-value=1.2e-25  Score=171.33  Aligned_cols=132  Identities=18%  Similarity=0.244  Sum_probs=106.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~   82 (176)
                      +..+++.++..++.|++.||.|||+ .+   ++||||||+||+++.++.++|+|||+++......  .....|...+.+|
T Consensus        89 ~~~l~~~~~~~~~~qi~~aL~~lH~~~~---ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  165 (325)
T cd05594          89 ERVFSEDRARFYGAEIVSALDYLHSEKN---VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAP  165 (325)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhcCC---EEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccccccCCcccCCH
Confidence            4568999999999999999999997 78   9999999999999999999999999986532221  1122344445444


Q ss_pred             CC-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCC-----C
Q 044320           83 GT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARP-----S  133 (176)
Q Consensus        83 ~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp-----~  133 (176)
                      +. ....++.++|+|||||++|+|.++..||.                       ..+.+++.+||..+|++|+     +
T Consensus       166 E~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~  245 (325)
T cd05594         166 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDD  245 (325)
T ss_pred             HHHccCCCCCccccccccceeeeeccCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCC
Confidence            43 46678899999999999999999887752                       3478899999999999996     8


Q ss_pred             HHHHHHH
Q 044320          134 MLEVARQ  140 (176)
Q Consensus       134 ~~~i~~~  140 (176)
                      +.++++.
T Consensus       246 ~~~il~h  252 (325)
T cd05594         246 AKEIMQH  252 (325)
T ss_pred             HHHHhcC
Confidence            8888754

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.92  E-value=1.1e-24  Score=161.10  Aligned_cols=137  Identities=19%  Similarity=0.277  Sum_probs=111.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      +..+++.+++.++.+++.||.|+|+.+   ++|+||+|+||+++.++.++++|||.+........  ....+...+.+|+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE  176 (267)
T cd08224         100 KRLIPERTIWKYFVQLCSALEHMHSKR---IMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPE  176 (267)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHhCC---EecCCcChhhEEECCCCcEEEeccceeeeccCCCcccceecCCccccCHH
Confidence            456899999999999999999999999   99999999999999999999999998865443221  1122333333333


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                       .....++.++|+||||+++|++.++..||                           +..+.+++.+||..+|.+||++.
T Consensus       177 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~  256 (267)
T cd08224         177 RIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDIS  256 (267)
T ss_pred             HhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCCcccCCCHH
Confidence             44667888999999999999997765443                           23588899999999999999999


Q ss_pred             HHHHHHHhhh
Q 044320          136 EVARQLENIS  145 (176)
Q Consensus       136 ~i~~~l~~~~  145 (176)
                      ++++.|+.+.
T Consensus       257 ~il~~~~~~~  266 (267)
T cd08224         257 YVLQVAKEMH  266 (267)
T ss_pred             HHHHHHHHhc
Confidence            9999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.92  E-value=8e-25  Score=163.17  Aligned_cols=133  Identities=20%  Similarity=0.247  Sum_probs=105.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC---CeEEeecCCcccCCCCCCCC----cccc-ce
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF---TPKVFDFEISRLAPVPNING----VVGH-VS   78 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~---~~~l~dfg~~~~~~~~~~~~----~~~~-~~   78 (176)
                      ..+++..++.++.|++.||+|||+.+   ++|+||+|+||+++.++   .++++|||+++.........    .... .+
T Consensus       111 ~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y  187 (277)
T cd05036         111 SSLTMKDLLFCARDVAKGCKYLEENH---FIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKW  187 (277)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhh
Confidence            35899999999999999999999999   99999999999998754   58999999987653222111    1111 22


Q ss_pred             eeecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCC
Q 044320           79 IVVKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        79 ~~~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      .+++......++.++|||||||++|++.+ +..||                        +..+.+++.+|+..+|++||+
T Consensus       188 ~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rps  267 (277)
T cd05036         188 MPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVTGGGRLDPPKGCPGPVYRIMTDCWQHTPEDRPN  267 (277)
T ss_pred             CCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcC
Confidence            33333346778999999999999999875 54443                        235778999999999999999


Q ss_pred             HHHHHHHHH
Q 044320          134 MLEVARQLE  142 (176)
Q Consensus       134 ~~~i~~~l~  142 (176)
                      +.++++.|+
T Consensus       268 ~~~vl~~l~  276 (277)
T cd05036         268 FATILERIQ  276 (277)
T ss_pred             HHHHHHHhh
Confidence            999999886

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.92  E-value=5e-25  Score=174.69  Aligned_cols=132  Identities=25%  Similarity=0.251  Sum_probs=104.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~   81 (176)
                      ...+++.+++.++.|++.||.|||+++   |+||||||+||+++.++.++|+|||+++.......    ....|...+.+
T Consensus       254 ~~~l~~~~~~~i~~qi~~aL~yLH~~g---IvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~A  330 (461)
T PHA03211        254 LRPLGLAQVTAVARQLLSAIDYIHGEG---IIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNA  330 (461)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcC
Confidence            346999999999999999999999999   99999999999999999999999999876432211    12234444444


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhccChHH------------------------------------------------
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------------------------------  112 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------------------------  112 (176)
                      ++ ..+..++.++|||||||++||+.++..++                                                
T Consensus       331 PE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  410 (461)
T PHA03211        331 PEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAAR  410 (461)
T ss_pred             HHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhc
Confidence            44 34667899999999999999985432100                                                


Q ss_pred             -----------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 -----------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 -----------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                       ...+.+++.+||..||.+|||+.++++.
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~h  455 (461)
T PHA03211        411 NRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRL  455 (461)
T ss_pred             ccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhC
Confidence                             0135678999999999999999999864

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.92  E-value=4.8e-25  Score=166.86  Aligned_cols=131  Identities=21%  Similarity=0.274  Sum_probs=105.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      +..+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++++|||++........  ....+...+.+|+
T Consensus        98 ~~~~~~~~~~~~~~qi~~aL~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE  174 (309)
T cd07872          98 GNIMSMHNVKIFLYQILRGLAYCHRRK---VLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPD  174 (309)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECccccceecCCCccccccccccccccCCH
Confidence            445899999999999999999999999   99999999999999999999999999875433221  1222334444454


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHHH------------------------------------------------
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------------  113 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------------  113 (176)
                      ..  ...++.++|+||+|+++|+|.++..+|.                                                
T Consensus       175 ~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (309)
T cd07872         175 VLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINH  254 (309)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhh
Confidence            33  3467889999999999999988875541                                                


Q ss_pred             -----HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 -----KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 -----~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                           ..+.+++.+|+..+|.+|||+.++++
T Consensus       255 ~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  285 (309)
T cd07872         255 APRLDTEGIELLTKFLQYESKKRISAEEAMK  285 (309)
T ss_pred             ccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence                 23568999999999999999999886

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.92  E-value=2.9e-25  Score=168.76  Aligned_cols=130  Identities=18%  Similarity=0.246  Sum_probs=105.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC--CCCCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV--PNINGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~--~~~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++++|||+++....  .......+...+.+|+
T Consensus        90 ~~~~~~~~~~~~~~qi~~al~~LH~~~---ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  166 (316)
T cd05619          90 CHKFDLPRATFYAAEIICGLQFLHSKG---IVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPE  166 (316)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCceeeecCCccccCHH
Confidence            356899999999999999999999999   99999999999999999999999999865322  1122233444454444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHH-HHH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSML-EVA  138 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~-~i~  138 (176)
                      . .+..++.++|+||+||++|++.++..||.                       ..+.+++.+||..+|.+||++. ++.
T Consensus       167 ~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05619         167 ILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMDNPCYPRWLTREAKDILVKLFVREPERRLGVKGDIR  246 (316)
T ss_pred             HHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHhccCHhhcCCChHHHH
Confidence            3 46678999999999999999998887752                       2467899999999999999997 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.92  E-value=2.2e-25  Score=164.34  Aligned_cols=134  Identities=18%  Similarity=0.162  Sum_probs=111.0

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--Cccccceeee
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIVV   81 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~   81 (176)
                      ..+.+|...++.-+..|++.|++|||...   |+|||||++|+|+...|.+|++|||+++.+..+...  ...=+.||-+
T Consensus       169 ~m~q~F~~~evK~L~~QlL~glk~lH~~w---ilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRa  245 (419)
T KOG0663|consen  169 TMKQPFLPGEVKTLMLQLLRGLKHLHDNW---ILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLKPYTPLVVTLWYRA  245 (419)
T ss_pred             hccCCCchHHHHHHHHHHHHHHHHHhhce---eEecccchhheeeccCCcEEecccchhhhhcCCcccCcceEEEeeecC
Confidence            45678999999999999999999999998   999999999999999999999999999998876432  3333456766


Q ss_pred             cCCC--CCCCCcccchhhHhHHHHHHhccChHHH----------------------------------------------
Q 044320           82 KGTH--TQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------------------------  113 (176)
Q Consensus        82 ~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------------------------  113 (176)
                      +++.  ...|+++.||||+||++.|++.+.+-|+                                              
T Consensus       246 PELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr  325 (419)
T KOG0663|consen  246 PELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLR  325 (419)
T ss_pred             HHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCchhhh
Confidence            6654  7789999999999999999844333221                                              


Q ss_pred             ---------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 ---------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 ---------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                               +.-.+++..++..||++|.|+.+.++.
T Consensus       326 ~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h  361 (419)
T KOG0663|consen  326 KKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKH  361 (419)
T ss_pred             hhccccccchhHHHHHHHHhccCccccccHHHhhcc
Confidence                     235678999999999999999988764

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.92  E-value=2.6e-25  Score=169.70  Aligned_cols=126  Identities=17%  Similarity=0.214  Sum_probs=103.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC--CCCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP--NINGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~~~~   83 (176)
                      .+.+++.++..++.|++.||+|||+++   ++||||||+||+++.++.++|+|||+++.....  ......|...+.+|+
T Consensus        90 ~~~l~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  166 (327)
T cd05617          90 QRKLPEEHARFYAAEICIALNFLHERG---IIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPE  166 (327)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEeCCCCEEEeccccceeccCCCCceecccCCcccCCHH
Confidence            456999999999999999999999999   999999999999999999999999998753221  112233444454444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH------------------------------HHHHHHHHhhcccCCCCCC
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------KRFMSLALKYCEDETKARP  132 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------~~l~~l~~~~~~~~p~~Rp  132 (176)
                      . .+..++.++|+||||+++|+|.++..||.                              ..+.+++.+|+..+|++|+
T Consensus       167 ~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~  246 (327)
T cd05617         167 ILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPRFLSVKASHVLKGFLNKDPKERL  246 (327)
T ss_pred             HHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcC
Confidence            3 46778899999999999999999888772                              2368899999999999999


Q ss_pred             CH
Q 044320          133 SM  134 (176)
Q Consensus       133 ~~  134 (176)
                      ++
T Consensus       247 ~~  248 (327)
T cd05617         247 GC  248 (327)
T ss_pred             CC
Confidence            84

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.92  E-value=5.5e-25  Score=167.65  Aligned_cols=131  Identities=18%  Similarity=0.145  Sum_probs=105.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++..+..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||+++......  .....|...+.+|+
T Consensus        94 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  170 (323)
T cd05584          94 EGIFMEDTACFYLSEISLALEHLHQQG---IIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPE  170 (323)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCcccccCCCccccChh
Confidence            456788999999999999999999999   9999999999999999999999999986432221  11223444454444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCC-----CH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARP-----SM  134 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp-----~~  134 (176)
                      . ....++.++||||+|+++|+|.++..||.                       ..+.+++.+||..+|++||     ++
T Consensus       171 ~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~  250 (323)
T cd05584         171 ILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGKLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDA  250 (323)
T ss_pred             hccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCH
Confidence            4 46667889999999999999998877752                       3578999999999999999     67


Q ss_pred             HHHHH
Q 044320          135 LEVAR  139 (176)
Q Consensus       135 ~~i~~  139 (176)
                      .++++
T Consensus       251 ~~l~~  255 (323)
T cd05584         251 AEVQS  255 (323)
T ss_pred             HHHhc
Confidence            77755

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.92  E-value=1.1e-24  Score=162.69  Aligned_cols=130  Identities=23%  Similarity=0.379  Sum_probs=106.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecC-CCC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKG-THT   86 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~-~~~   86 (176)
                      .+++..+..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++............+...+.+|+ ...
T Consensus        91 ~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~  167 (279)
T cd06619          91 KIPEHVLGRIAVAVVKGLTYLWSLK---ILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISG  167 (279)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHCC---EeeCCCCHHHEEECCCCCEEEeeCCcceecccccccCCCCChhhcCceeecC
Confidence            4688899999999999999999999   999999999999999999999999998765443333333444444444 446


Q ss_pred             CCCCcccchhhHhHHHHHHhccChHHH--------------------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           87 QQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        87 ~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      ..++.++|+||||+++|++.++..||.                                .++.+++.+||..+|++||++
T Consensus       168 ~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~  247 (279)
T cd06619         168 EQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPKERPAP  247 (279)
T ss_pred             CCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHHHHhhCChhhCCCH
Confidence            678899999999999999988876652                                246789999999999999999


Q ss_pred             HHHHHH
Q 044320          135 LEVARQ  140 (176)
Q Consensus       135 ~~i~~~  140 (176)
                      .++++.
T Consensus       248 ~eil~~  253 (279)
T cd06619         248 ENLMDH  253 (279)
T ss_pred             HHHhcC
Confidence            998764

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.92  E-value=5.4e-25  Score=163.35  Aligned_cols=131  Identities=23%  Similarity=0.276  Sum_probs=106.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++..+..++.|++.||+|||+.+   ++|+|++|+||+++.++.++++|||++.......  .....+...+.+|+
T Consensus       105 ~~~l~~~~~~~~~~qi~~~l~~LH~~~---ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE  181 (272)
T cd06637         105 GNTLKEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPE  181 (272)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHEEECCCCCEEEccCCCceecccccccCCcccccccccCHh
Confidence            456899999999999999999999999   9999999999999999999999999987543221  11222334444444


Q ss_pred             CC------CCCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCC
Q 044320           84 TH------TQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARP  132 (176)
Q Consensus        84 ~~------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp  132 (176)
                      ..      ...++.++|+||+||++|++.++..||.                         ..+.+++.+||..+|.+||
T Consensus       182 ~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  261 (272)
T cd06637         182 VIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRP  261 (272)
T ss_pred             HhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhcCCCCCCCCCCcCHHHHHHHHHHcCCChhhCC
Confidence            32      3457889999999999999988887652                         3688999999999999999


Q ss_pred             CHHHHHH
Q 044320          133 SMLEVAR  139 (176)
Q Consensus       133 ~~~~i~~  139 (176)
                      ++.++++
T Consensus       262 t~~~il~  268 (272)
T cd06637         262 TTEQLMK  268 (272)
T ss_pred             CHHHHhh
Confidence            9998875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.92  E-value=3e-25  Score=169.04  Aligned_cols=126  Identities=18%  Similarity=0.210  Sum_probs=103.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+++   ++||||||+||+++.++.++++|||+++......  .....|...+.+|+
T Consensus        95 ~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE  171 (323)
T cd05616          95 VGRFKEPHAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPE  171 (323)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---EEecCCCHHHeEECCCCcEEEccCCCceecCCCCCccccCCCChhhcCHH
Confidence            356899999999999999999999999   9999999999999999999999999987533211  12233445455444


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                       .....++.++|+|||||++|+|.++..||.                       .++.+++.+|+..+|.+|++.
T Consensus       172 ~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         172 IIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             HhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHcccCHHhcCCC
Confidence             346778999999999999999998887752                       357789999999999999984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.92  E-value=6e-25  Score=164.26  Aligned_cols=132  Identities=15%  Similarity=0.133  Sum_probs=105.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~   82 (176)
                      .+..+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++++|||++........  ....+...+.+|
T Consensus        90 ~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aP  166 (280)
T cd05608          90 ENPGFPEPRACFYTAQIISGLEHLHQRR---IIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAP  166 (280)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEeeCccceecCCCCccccccCCCcCccCH
Confidence            3456999999999999999999999999   99999999999999999999999999876443221  122333344444


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCC--
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARP--  132 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp--  132 (176)
                      + ..+..++.++|+||||+++|++.++..||                           +..+.+++.+||..+|++||  
T Consensus       167 E~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~  246 (280)
T cd05608         167 ELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILNDSVTYPDKFSPASKSFCEALLAKDPEKRLGF  246 (280)
T ss_pred             HHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhcccCCCCcccCCHHHHHHHHHHhcCCHHHhcCC
Confidence            4 44677889999999999999998876654                           23478899999999999999  


Q ss_pred             ---CHHHHHH
Q 044320          133 ---SMLEVAR  139 (176)
Q Consensus       133 ---~~~~i~~  139 (176)
                         +++++++
T Consensus       247 ~~~~~~~~l~  256 (280)
T cd05608         247 RDGNCDGLRT  256 (280)
T ss_pred             CCCCHHHHhc
Confidence               5556654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.92  E-value=4.2e-25  Score=168.72  Aligned_cols=131  Identities=17%  Similarity=0.224  Sum_probs=105.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC--CCCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP--NINGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~~~~   83 (176)
                      ...+++..+..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++.....  ......|...+.+|+
T Consensus        90 ~~~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  166 (329)
T cd05588          90 QRKLPEEHARFYSAEISLALNFLHERG---IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPE  166 (329)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEECcCccccccccCCCccccccCCccccCHH
Confidence            457999999999999999999999999   999999999999999999999999998643211  111223444444444


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHHH--------------------------------HHHHHHHHhhcccCCCC
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------------KRFMSLALKYCEDETKA  130 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------------~~l~~l~~~~~~~~p~~  130 (176)
                       .....++.++|+||+||++|++.++..||.                                ..+.+++.+|+..+|.+
T Consensus       167 ~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~  246 (329)
T cd05588         167 ILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIPRSLSVKASSVLKGFLNKDPKE  246 (329)
T ss_pred             HHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHH
Confidence             346678899999999999999998877762                                23678999999999999


Q ss_pred             CCC------HHHHHH
Q 044320          131 RPS------MLEVAR  139 (176)
Q Consensus       131 Rp~------~~~i~~  139 (176)
                      |++      +.++++
T Consensus       247 R~~~~~~~~~~~i~~  261 (329)
T cd05588         247 RLGCHPQTGFRDIKS  261 (329)
T ss_pred             cCCCCCCCCHHHHhc
Confidence            997      556653

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.92  E-value=3.4e-25  Score=168.49  Aligned_cols=131  Identities=19%  Similarity=0.206  Sum_probs=106.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++++|||+++......  .....+...+.+|+
T Consensus        90 ~~~l~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE  166 (318)
T cd05570          90 SGRFDEPRARFYAAEIVLGLQFLHERG---IIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPE  166 (318)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEccCCCHHHeEECCCCcEEecccCCCeecCcCCCcccceecCccccCHH
Confidence            346999999999999999999999999   9999999999999999999999999886532221  11222344444444


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCH-----
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSM-----  134 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~-----  134 (176)
                       ..+..++.++|+||+||++|++.++..||.                       ..+.+++.+||..+|.+||++     
T Consensus       167 ~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~  246 (318)
T cd05570         167 ILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILEDEVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGE  246 (318)
T ss_pred             HhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCH
Confidence             446778899999999999999998887752                       357899999999999999998     


Q ss_pred             HHHHH
Q 044320          135 LEVAR  139 (176)
Q Consensus       135 ~~i~~  139 (176)
                      .++++
T Consensus       247 ~~ll~  251 (318)
T cd05570         247 QDIKG  251 (318)
T ss_pred             HHHhc
Confidence            76654

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.92  E-value=7.5e-25  Score=163.33  Aligned_cols=135  Identities=21%  Similarity=0.301  Sum_probs=109.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC------Cccccceee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN------GVVGHVSIV   80 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~------~~~~~~~~~   80 (176)
                      ..+++.+++.++.|++.||+|||+.+   ++|+||+|+||+++.++.++++|||.+.........      ......+.+
T Consensus       104 ~~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (284)
T cd05038         104 DQINLKRLLLFSSQICKGMDYLGSQR---YIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYA  180 (284)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccC
Confidence            35899999999999999999999999   999999999999999999999999998776522111      111122334


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhccChHH---------------------------------------HHHHHHHHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------LKRFMSLAL  121 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------~~~l~~l~~  121 (176)
                      ++......++.++|+||||++++++.++..++                                       +.++.+++.
T Consensus       181 Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  260 (284)
T cd05038         181 PECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMK  260 (284)
T ss_pred             cHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCCcCCCCccCCHHHHHHHH
Confidence            44444567888999999999999998754432                                       235779999


Q ss_pred             hhcccCCCCCCCHHHHHHHHHhh
Q 044320          122 KYCEDETKARPSMLEVARQLENI  144 (176)
Q Consensus       122 ~~~~~~p~~Rp~~~~i~~~l~~~  144 (176)
                      +||..+|++||++.++++.|+++
T Consensus       261 ~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         261 LCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             HHhccChhhCCCHHHHHHHHhhc
Confidence            99999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.92  E-value=1.5e-24  Score=160.81  Aligned_cols=136  Identities=21%  Similarity=0.302  Sum_probs=108.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC---ccc--c-cee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING---VVG--H-VSI   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~---~~~--~-~~~   79 (176)
                      ...+++.+++.++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||.+..........   ..+  . .+.
T Consensus       100 ~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~  176 (267)
T cd05066         100 DGQFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT  176 (267)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---EeehhhchhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeec
Confidence            346899999999999999999999999   9999999999999999999999999987654322111   111  1 122


Q ss_pred             eecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           80 VVKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        80 ~~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +++......++.++|+||||+++|++++ +..+|                        +..+.+++.+|++.+|.+||++
T Consensus       177 ~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~  256 (267)
T cd05066         177 APEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEEGYRLPAPMDCPAALHQLMLDCWQKDRNERPKF  256 (267)
T ss_pred             CHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCchhCCCH
Confidence            3333345678899999999999999765 55554                        2357889999999999999999


Q ss_pred             HHHHHHHHhh
Q 044320          135 LEVARQLENI  144 (176)
Q Consensus       135 ~~i~~~l~~~  144 (176)
                      .++++.|+++
T Consensus       257 ~~i~~~l~~~  266 (267)
T cd05066         257 EQIVSILDKL  266 (267)
T ss_pred             HHHHHHHHhh
Confidence            9999999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.92  E-value=4.1e-25  Score=172.45  Aligned_cols=131  Identities=20%  Similarity=0.276  Sum_probs=112.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      ...++++.+..++.++..||.|||+.+   |+|||+||.||+++.++.+|++|||+++.+..+..  ....|++.|++|+
T Consensus        94 d~~lpEe~v~~~a~~LVsaL~yLhs~r---ilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPE  170 (808)
T KOG0597|consen   94 DGKLPEEQVRAIAYDLVSALYYLHSNR---ILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPE  170 (808)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhcC---cccccCCcceeeecCCCceeechhhhhhhcccCceeeeeccCcccccCHH
Confidence            567999999999999999999999999   99999999999999999999999999998876542  3445677666665


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHHH-----------------------HHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYLK-----------------------RFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~-----------------------~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      + .++.|+..+|+||+||++||+..|.+||..                       .+..+++..+..||.+|.+..+++.
T Consensus       171 lv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si~~Lv~~I~~d~v~~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~  250 (808)
T KOG0597|consen  171 LVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSITQLVKSILKDPVKPPSTASSSFVNFLQGLLIKDPAQRLTWTDLLG  250 (808)
T ss_pred             HHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHhhcChhhcccHHHHhc
Confidence            5 488899999999999999999999999864                       2566777778888888888777654

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.92  E-value=7.8e-25  Score=166.85  Aligned_cols=131  Identities=20%  Similarity=0.242  Sum_probs=105.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||+++......  .....|...+.+|+
T Consensus        95 ~~~l~~~~~~~~~~qi~~al~~lH~~~---ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE  171 (324)
T cd05589          95 TDVFSEPRAVFYAACVVLGLQYLHENK---IVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPE  171 (324)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCcccccccCccccCHh
Confidence            356999999999999999999999999   9999999999999999999999999886532221  11223444444444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCC-----CH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARP-----SM  134 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp-----~~  134 (176)
                      . ....++.++|+|||||++|+|.++..||.                       ..+.+++.+||..+|.+||     ++
T Consensus       172 ~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~  251 (324)
T cd05589         172 VLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSREAISIMRRLLRRNPERRLGSGEKDA  251 (324)
T ss_pred             HhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCH
Confidence            3 46678899999999999999988887752                       3477899999999999999     45


Q ss_pred             HHHHH
Q 044320          135 LEVAR  139 (176)
Q Consensus       135 ~~i~~  139 (176)
                      .++++
T Consensus       252 ~~l~~  256 (324)
T cd05589         252 EDVKK  256 (324)
T ss_pred             HHHhh
Confidence            56554

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.92  E-value=1.2e-24  Score=160.06  Aligned_cols=134  Identities=24%  Similarity=0.359  Sum_probs=109.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~   81 (176)
                      ...+++.+++.++.|++.||+|||+++   ++|+||+|+||+++.++.++++|||.+.......    .....+...+.+
T Consensus        99 ~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  175 (262)
T cd00192          99 KSTLSLKDLLSFAIQIAKGMEYLASKK---FVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMA  175 (262)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHcCC---cccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccC
Confidence            477999999999999999999999999   9999999999999999999999999998765432    112222233333


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhcc-ChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGLY-SFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~~-~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+ .....++.++|+||+|+++|++.++ ..||                        +..+.+++.+||..+|.+||++.
T Consensus       176 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  255 (262)
T cd00192         176 PESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRKGYRLPKPEYCPDELYELMLSCWQLDPEDRPTFS  255 (262)
T ss_pred             HHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCccCChHHHHHHHHHccCCcccCcCHH
Confidence            33 3355788999999999999999874 4332                        24688999999999999999999


Q ss_pred             HHHHHHH
Q 044320          136 EVARQLE  142 (176)
Q Consensus       136 ~i~~~l~  142 (176)
                      +++..|+
T Consensus       256 ~l~~~l~  262 (262)
T cd00192         256 ELVERLE  262 (262)
T ss_pred             HHHHhhC
Confidence            9998763

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.92  E-value=1.4e-24  Score=161.07  Aligned_cols=136  Identities=22%  Similarity=0.334  Sum_probs=107.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccc---c-c
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVG---H-V   77 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~---~-~   77 (176)
                      ...+++.+++.++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++.........    ...+   . .
T Consensus       100 ~~~~~~~~~~~i~~~l~~al~~lH~~g---~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  176 (269)
T cd05065         100 DGQFTVIQLVGMLRGIAAGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIR  176 (269)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccChheEEEcCCCcEEECCCccccccccCccccccccccCCCccee
Confidence            456899999999999999999999999   999999999999999999999999988654322111    1111   1 2


Q ss_pred             eeeecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           78 SIVVKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        78 ~~~~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +.+++......++.++||||+|+++||+.+ +..||                        +..+.+++.+||..+|.+||
T Consensus       177 y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  256 (269)
T cd05065         177 WTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIEQDYRLPPPMDCPTALHQLMLDCWQKDRNARP  256 (269)
T ss_pred             ecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCcCCCcccCCHHHHHHHHHHcCCChhhCc
Confidence            333333446678889999999999999765 54443                        23578899999999999999


Q ss_pred             CHHHHHHHHHhh
Q 044320          133 SMLEVARQLENI  144 (176)
Q Consensus       133 ~~~~i~~~l~~~  144 (176)
                      ++.+++..|+++
T Consensus       257 ~~~~i~~~l~~~  268 (269)
T cd05065         257 KFGQIVSTLDKM  268 (269)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.92  E-value=6.7e-25  Score=163.89  Aligned_cols=131  Identities=15%  Similarity=0.149  Sum_probs=104.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      +..+++..++.++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+|+
T Consensus        93 ~~~~~~~~~~~~~~qi~~al~~LH~~~---i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  169 (284)
T cd07839          93 NGDIDPEIVKSFMFQLLKGLAFCHSHN---VLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPD  169 (284)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCcCCCccccCCcChH
Confidence            456999999999999999999999999   99999999999999999999999999875443221  1122233444444


Q ss_pred             CC-C-CCCCcccchhhHhHHHHHHhccChHH-------------------------------------------------
Q 044320           84 TH-T-QQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------------  112 (176)
Q Consensus        84 ~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------------  112 (176)
                      .. + ..++.++|+||+|+++|+|.++..|+                                                 
T Consensus       170 ~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (284)
T cd07839         170 VLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNV  249 (284)
T ss_pred             HHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhh
Confidence            32 3 34688999999999999998765542                                                 


Q ss_pred             ----HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ----LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ----~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                          ...+.+++.+||..+|.+|||+.++++
T Consensus       250 ~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         250 VPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             cccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence                134568999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.92  E-value=6.5e-25  Score=163.93  Aligned_cols=131  Identities=19%  Similarity=0.217  Sum_probs=104.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      +..+++.++..++.|++.||+|||+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+|+
T Consensus        95 ~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  171 (285)
T cd07861          95 GQYMDAELVKSYLYQILQGILFCHSRR---VLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPE  171 (285)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCCHHHEEEcCCCcEEECcccceeecCCCcccccCCcccccccChH
Confidence            356999999999999999999999999   99999999999999999999999999875443221  1112233344444


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHHH------------------------------------------------
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------------  113 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------------  113 (176)
                      ..  ...++.++|+||||+++|++.++..+|.                                                
T Consensus       172 ~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (285)
T cd07861         172 VLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAV  251 (285)
T ss_pred             HhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhc
Confidence            32  3456889999999999999988765431                                                


Q ss_pred             ----HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 ----KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ----~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                          .++.+++.+||..+|.+||++.++++
T Consensus       252 ~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         252 KNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             CCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence                23558999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.92  E-value=4.4e-25  Score=168.25  Aligned_cols=126  Identities=18%  Similarity=0.207  Sum_probs=102.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC--CCCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP--NINGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+++   ++||||||+||+++.++.++++|||++......  ......|...+.+|+
T Consensus        95 ~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  171 (324)
T cd05587          95 VGKFKEPHAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPE  171 (324)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCceeeecCCccccChh
Confidence            456899999999999999999999999   999999999999999999999999988643211  111223444454444


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                       .....++.++|+||+||++|+|.++..||.                       ..+.+++.+|+..+|.+|++.
T Consensus       172 ~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         172 IIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             hhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence             446678899999999999999999887762                       246789999999999999976

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.92  E-value=8.3e-25  Score=161.45  Aligned_cols=135  Identities=24%  Similarity=0.356  Sum_probs=108.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Ccccc-ceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGH-VSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~-~~~~~   81 (176)
                      ...+++.++..++.|++.|+.|+|+.+   ++|+||+|+||+++.++.++++|||.+.........   ..... .+.++
T Consensus        97 ~~~~~~~~~~~~~~~i~~al~~lh~~~---i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~P  173 (261)
T cd05034          97 GKKLRLPQLVDMAAQIAEGMAYLESRN---YIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAP  173 (261)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcchheEEEcCCCCEEECccccceeccchhhhhhhccCCCccccCH
Confidence            356899999999999999999999999   999999999999999999999999998765432211   11111 23333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +...+..++.++|+||+|++++++.+ +..||                        +..+.+++.+|+..+|++||++.+
T Consensus       174 E~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~  253 (261)
T cd05034         174 EAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVERGYRMPRPPNCPEELYDLMLQCWDKDPEERPTFEY  253 (261)
T ss_pred             HHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHH
Confidence            33345668889999999999999987 55443                        236889999999999999999999


Q ss_pred             HHHHHHh
Q 044320          137 VARQLEN  143 (176)
Q Consensus       137 i~~~l~~  143 (176)
                      +.+.|+.
T Consensus       254 l~~~l~~  260 (261)
T cd05034         254 LQSFLED  260 (261)
T ss_pred             HHHHHhc
Confidence            9999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=4.3e-25  Score=175.03  Aligned_cols=127  Identities=20%  Similarity=0.232  Sum_probs=110.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCC--CCCCCCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP--VPNINGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~--~~~~~~~~~~~~~~~~   82 (176)
                      ....|++..+..||++++.||.|||+++   ||+||||.+|||+|.+|.+||+|||+++..-  ........|++.+.+|
T Consensus       461 ~~~~F~e~rarfyaAev~l~L~fLH~~~---IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aP  537 (694)
T KOG0694|consen  461 HTDVFSEPRARFYAAEVVLGLQFLHENG---IIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAP  537 (694)
T ss_pred             ecccccHHHHHHHHHHHHHHHHHHHhcC---ceeeecchhheEEcccCcEEecccccccccCCCCCccccccCChhhcCh
Confidence            3477999999999999999999999999   9999999999999999999999999998743  2334445677777666


Q ss_pred             CC-CCCCCCcccchhhHhHHHHHHhccChHHHH-----------------------HHHHHHHhhcccCCCCCCCH
Q 044320           83 GT-HTQQLTEKSDIYGLGIACLYMGLYSFEYLK-----------------------RFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        83 ~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~-----------------------~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +. ....|+.+.|+|||||++|||+.|..||+.                       +..+++.+++..+|++|--+
T Consensus       538 Eil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~FdsI~~d~~~yP~~ls~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  538 EVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSKEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             hhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCCCCCCcccHHHHHHHHHHhccCcccccCC
Confidence            65 488999999999999999999999999863                       46789999999999999554

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.92  E-value=1.9e-24  Score=160.50  Aligned_cols=138  Identities=22%  Similarity=0.261  Sum_probs=110.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Ccccc-ceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGH-VSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~-~~~~~   81 (176)
                      ...+++.+++.++.|++.||+|+|+.+   ++|+||+|+||+++.++.++++|||+++........   ...+. .+.++
T Consensus       101 ~~~~~~~~~~~~~~~l~~~l~~lH~~~---~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aP  177 (270)
T cd05056         101 KYSLDLASLILYSYQLSTALAYLESKR---FVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAP  177 (270)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccChheEEEecCCCeEEccCceeeecccccceecCCCCccccccCh
Confidence            446899999999999999999999999   999999999999999999999999998765433211   11111 22233


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||++++++.+ +..||                        +..+.+++.+|+..+|.+||++.+
T Consensus       178 E~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~  257 (270)
T cd05056         178 ESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTE  257 (270)
T ss_pred             hhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            33445678899999999999999864 54443                        246889999999999999999999


Q ss_pred             HHHHHHhhhh
Q 044320          137 VARQLENISS  146 (176)
Q Consensus       137 i~~~l~~~~~  146 (176)
                      +++.|+.+..
T Consensus       258 ~~~~l~~~~~  267 (270)
T cd05056         258 LKAQLSDILQ  267 (270)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.92  E-value=4.3e-25  Score=168.22  Aligned_cols=127  Identities=20%  Similarity=0.164  Sum_probs=103.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      +..+++..+..++.|++.||.|||+++   ++||||||+||+++.++.++++|||+++......  .....|...+.+|+
T Consensus        90 ~~~~~~~~~~~~~~qi~~~l~~lH~~g---ivH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  166 (323)
T cd05575          90 ERSFPEPRARFYAAEIASALGYLHSLN---IIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPE  166 (323)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCccccccCChhhcChh
Confidence            456899999999999999999999999   9999999999999999999999999986532211  12223444444444


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                       ..+..++.++|||||||++|+|.++..||.                       ..+.+++.+|++.+|.+||++.
T Consensus       167 ~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         167 VLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKPLRLKPNISVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             hhcCCCCCccccccccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhCCCCC
Confidence             446778899999999999999998887752                       2478899999999999999874

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.92  E-value=1.8e-24  Score=160.25  Aligned_cols=133  Identities=21%  Similarity=0.280  Sum_probs=106.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-----CeEEeecCCcccCCCCCCCCc----c-cc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF-----TPKVFDFEISRLAPVPNINGV----V-GH   76 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~-----~~~l~dfg~~~~~~~~~~~~~----~-~~   76 (176)
                      ..+++.+++.++.|++.||+|+|+.+   ++|+||+|+||+++.++     .++++|||+++..........    . ..
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~  177 (269)
T cd05044         101 PLLTLKELLDICLDVAKGCVYLEQMH---FIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPV  177 (269)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhCC---cccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCc
Confidence            45889999999999999999999998   99999999999998877     899999999875433221111    1 11


Q ss_pred             ceeeecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCC
Q 044320           77 VSIVVKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKAR  131 (176)
Q Consensus        77 ~~~~~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~R  131 (176)
                      .+.+++......++.++||||||+++|++++ +..||                        +..+.+++.+||..+|.+|
T Consensus       178 ~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  257 (269)
T cd05044         178 RWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTAGGRLQKPENCPDKIYQLMTNCWAQDPSER  257 (269)
T ss_pred             cccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhcCCccCCcccchHHHHHHHHHHcCCCcccC
Confidence            2333444446778899999999999999976 54443                        2458899999999999999


Q ss_pred             CCHHHHHHHHH
Q 044320          132 PSMLEVARQLE  142 (176)
Q Consensus       132 p~~~~i~~~l~  142 (176)
                      |++.++.+.|+
T Consensus       258 p~~~~i~~~l~  268 (269)
T cd05044         258 PTFDRIQEILQ  268 (269)
T ss_pred             CCHHHHHHHHh
Confidence            99999999886

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.92  E-value=1.7e-24  Score=169.40  Aligned_cols=137  Identities=17%  Similarity=0.225  Sum_probs=109.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceee-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIV-   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~-   80 (176)
                      ...+++..++.++.|++.||+|||+.+   ++||||||+||+++.++.++++|||+++.......    ....+...+. 
T Consensus       233 ~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~a  309 (401)
T cd05107         233 SPALSYMDLVGFSYQVANGMEFLASKN---CVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMA  309 (401)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCC---cCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeC
Confidence            456899999999999999999999998   99999999999999999999999999876432211    1112223333 


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH-------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY-------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      ++......++.++|+||||+++||+.+ +..||                         +..+.+++.+||..+|.+||++
T Consensus       310 PE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~  389 (401)
T cd05107         310 PESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDF  389 (401)
T ss_pred             hHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCH
Confidence            333445667889999999999999876 44333                         2357789999999999999999


Q ss_pred             HHHHHHHHhhh
Q 044320          135 LEVARQLENIS  145 (176)
Q Consensus       135 ~~i~~~l~~~~  145 (176)
                      .++++.|+++.
T Consensus       390 ~ell~~L~~~~  400 (401)
T cd05107         390 SQLVHLVGDLL  400 (401)
T ss_pred             HHHHHHHHHHh
Confidence            99999999764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.92  E-value=5e-25  Score=164.45  Aligned_cols=134  Identities=16%  Similarity=0.184  Sum_probs=106.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKG-   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~-   83 (176)
                      ...+++..+..++.|++.||+|||+.+   ++||||||+||+++.++.++++|||++........ ....+...+.+|+ 
T Consensus        89 ~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~  165 (277)
T cd05607          89 ERGLEMERVIHYSAQITCGILHLHSMD---IVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGTNGYMAPEI  165 (277)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHCC---EEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeeccCCCCCccCHHH
Confidence            346899999999999999999999999   99999999999999999999999998876543221 1222333344443 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHHH----------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      .....++.++|+||+||++|++.++..||.                            .++.+++.+||+.+|++||++.
T Consensus       166 ~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~  245 (277)
T cd05607         166 LKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSR  245 (277)
T ss_pred             HccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhccccccccccCCHHHHHHHHHHhccCHhhCCCCc
Confidence            345668899999999999999988776652                            2378899999999999999997


Q ss_pred             HHHHHHH
Q 044320          136 EVARQLE  142 (176)
Q Consensus       136 ~i~~~l~  142 (176)
                      ++++.+.
T Consensus       246 ~~~~~~~  252 (277)
T cd05607         246 EKNDDPR  252 (277)
T ss_pred             cchhhhh
Confidence            6654433

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=3.8e-25  Score=169.93  Aligned_cols=130  Identities=18%  Similarity=0.179  Sum_probs=107.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-----------------
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-----------------   69 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-----------------   69 (176)
                      ..+++.++..++.|++.||+|||+.+   ++||||||+||+++.++.++|+|||++.......                 
T Consensus        96 ~~l~~~~~~~i~~qi~~aL~~LH~~g---iiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (350)
T cd05573          96 DVFPEETARFYIAELVLALDSVHKLG---FIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDN  172 (350)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEeecCCCCccCcccCccccccccccccccccc
Confidence            57899999999999999999999999   9999999999999999999999999987654332                 


Q ss_pred             --------------CCCccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHH----------------------
Q 044320           70 --------------INGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY----------------------  112 (176)
Q Consensus        70 --------------~~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------  112 (176)
                                    .....|...+.+|+. ....++.++|||||||++|+|.++..||                      
T Consensus       173 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p  252 (350)
T cd05573         173 VLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFP  252 (350)
T ss_pred             ccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHHHHHHHHhccCCcccCC
Confidence                          112234444444443 4667899999999999999998887765                      


Q ss_pred             -----HHHHHHHHHhhcccCCCCCCC-HHHHHHH
Q 044320          113 -----LKRFMSLALKYCEDETKARPS-MLEVARQ  140 (176)
Q Consensus       113 -----~~~l~~l~~~~~~~~p~~Rp~-~~~i~~~  140 (176)
                           +..+.+++.+|+. +|.+||+ +.++++.
T Consensus       253 ~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         253 PDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             CCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence                 2347789999997 9999999 9999874

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.92  E-value=1.8e-24  Score=159.35  Aligned_cols=129  Identities=21%  Similarity=0.228  Sum_probs=103.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-------CeEEeecCCcccCCCCCCCCccccceee
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF-------TPKVFDFEISRLAPVPNINGVVGHVSIV   80 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~-------~~~l~dfg~~~~~~~~~~~~~~~~~~~~   80 (176)
                      .+++..++.++.|++.||+|||+++   ++|+||||+||+++.++       .++++|||++........  ..+...+.
T Consensus        97 ~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~y~  171 (259)
T cd05037          97 NVSLHWKLDVAKQLASALHYLEDKK---LVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSREE--RVERIPWI  171 (259)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhCC---eecccCccceEEEecCccccCCceeEEeCCCCcccccccccc--cccCCCcc
Confidence            6899999999999999999999999   99999999999998877       799999999876544221  11222233


Q ss_pred             ecCC-CC--CCCCcccchhhHhHHHHHHhcc-ChHH----------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKGT-HT--QQLTEKSDIYGLGIACLYMGLY-SFEY----------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~~-~~--~~~~~~~Dv~s~G~~l~~l~~~-~~~~----------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +|+. ..  ..++.++|+||||+++|++.++ ..++                      ...+.+++.+||..+|.+||++
T Consensus       172 aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~  251 (259)
T cd05037         172 APECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERFYQDQHRLPMPDCAELANLINQCWTYDPTKRPSF  251 (259)
T ss_pred             ChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchhHHHHHhcCCCCCCCCchHHHHHHHHHhccChhhCCCH
Confidence            3333 33  3678899999999999999773 3332                      1357899999999999999999


Q ss_pred             HHHHHHH
Q 044320          135 LEVARQL  141 (176)
Q Consensus       135 ~~i~~~l  141 (176)
                      .++++.|
T Consensus       252 ~~il~~l  258 (259)
T cd05037         252 RAILRDL  258 (259)
T ss_pred             HHHHHhc
Confidence            9999876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.92  E-value=3.1e-24  Score=160.07  Aligned_cols=139  Identities=18%  Similarity=0.292  Sum_probs=111.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-Ccc---c-cceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-GVV---G-HVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~---~-~~~~~   80 (176)
                      ...+++..+..++.|++.||+|||+.+   ++|+||+|+||+++.++.++++|||.++........ ...   + ..+..
T Consensus       103 ~~~~~~~~~~~~~~qi~~~l~~LH~~~---i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~  179 (279)
T cd05057         103 KDNIGSQYLLNWCVQIAKGMSYLEEKR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMA  179 (279)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---EEecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccC
Confidence            446899999999999999999999998   999999999999999999999999998765432211 111   1 12333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++|+||||+++|++.+ +..||.                        ..+.+++.+||..+|..||++.
T Consensus       180 PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~  259 (279)
T cd05057         180 LESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPDLLEKGERLPQPPICTIDVYMVLVKCWMIDAESRPTFK  259 (279)
T ss_pred             HHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHH
Confidence            333445677889999999999999987 655541                        2477899999999999999999


Q ss_pred             HHHHHHHhhhhc
Q 044320          136 EVARQLENISSM  147 (176)
Q Consensus       136 ~i~~~l~~~~~~  147 (176)
                      ++++.|.++...
T Consensus       260 ~l~~~l~~~~~~  271 (279)
T cd05057         260 ELINEFSKMARD  271 (279)
T ss_pred             HHHHHHHHHHhC
Confidence            999999987653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.92  E-value=3.2e-25  Score=169.06  Aligned_cols=129  Identities=20%  Similarity=0.171  Sum_probs=104.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++..+..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||+++......  .....|...+.+|+
T Consensus        90 ~~~~~~~~~~~~~~qi~~~L~~lH~~g---iiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE  166 (325)
T cd05602          90 ERCFLEPRARFYAAEIASALGYLHSLN---IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPE  166 (325)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCcccccCCccccCHH
Confidence            456888999999999999999999999   9999999999999999999999999987532221  12223444454444


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                       ..+..++.++||||+||++|+|.++..||.                       ..+.+++.+|++.+|.+||++.+.
T Consensus       167 ~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~  244 (325)
T cd05602         167 VLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDD  244 (325)
T ss_pred             HHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHHHHHHHHhCCcCCCCCCCHHHHHHHHHHcccCHHHCCCCCCC
Confidence             446778899999999999999998887752                       247789999999999999987643

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.92  E-value=4.4e-25  Score=166.11  Aligned_cols=131  Identities=22%  Similarity=0.272  Sum_probs=108.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC------CCeEEeecCCcccCCCCCCC-Cccccc
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK------FTPKVFDFEISRLAPVPNIN-GVVGHV   77 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~------~~~~l~dfg~~~~~~~~~~~-~~~~~~   77 (176)
                      +++.+++++++.++.|+|.||++||+++   ||||||||.|||++..      -.+||+|||+++........ ...|.+
T Consensus       102 ~~~~l~e~t~r~Fm~QLA~alq~L~~~~---IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~a~tlcGSp  178 (429)
T KOG0595|consen  102 RRGRLPEATARHFMQQLASALQFLHENN---IIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSMAETLCGSP  178 (429)
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhHHHHhhCCc
Confidence            3558999999999999999999999999   9999999999999765      46899999999988755432 345667


Q ss_pred             eeeecCCC-CCCCCcccchhhHhHHHHHHhccChHHHH--------------------------HHHHHHHhhcccCCCC
Q 044320           78 SIVVKGTH-TQQLTEKSDIYGLGIACLYMGLYSFEYLK--------------------------RFMSLALKYCEDETKA  130 (176)
Q Consensus        78 ~~~~~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~--------------------------~l~~l~~~~~~~~p~~  130 (176)
                      .|++|+.. .++|+.|+|+||+|+++|+++++..||..                          .+.++....+..++..
T Consensus       179 lYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~eL~~~~~k~~~~~~~~~~~~s~~~~~Ll~~ll~~~~~~  258 (429)
T KOG0595|consen  179 LYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPKELLLYIKKGNEIVPVLPAELSNPLRELLISLLQRNPKD  258 (429)
T ss_pred             cccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhccccccCchhhhccCchhhhhhHHHhcCccc
Confidence            77766665 89999999999999999999999999852                          2456777777888888


Q ss_pred             CCCHHHHH
Q 044320          131 RPSMLEVA  138 (176)
Q Consensus       131 Rp~~~~i~  138 (176)
                      |.++.+..
T Consensus       259 ~~~~~~~~  266 (429)
T KOG0595|consen  259 RISFEDFF  266 (429)
T ss_pred             cCchHHhh
Confidence            87776543

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=6.1e-25  Score=173.76  Aligned_cols=134  Identities=18%  Similarity=0.228  Sum_probs=113.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKG   83 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~   83 (176)
                      .+++|++.++.++++||..|+.|||+.+   |+||||||+|+|++.++.+||+|||.+....... .....|.+-|+.|+
T Consensus       105 ~kG~l~e~eaa~ff~QIi~gv~yCH~~~---icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklLeTSCGSPHYA~PE  181 (786)
T KOG0588|consen  105 RKGPLPEREAAHFFRQILDGVSYCHAFN---ICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLLETSCGSPHYAAPE  181 (786)
T ss_pred             hhCCCCCHHHHHHHHHHHHHHHHHhhhc---ceeccCCchhhhhhcccCEeeeccceeecccCCccccccCCCcccCCch
Confidence            4678999999999999999999999999   9999999999999999899999999997755443 22334555566555


Q ss_pred             CC-CCCC-CcccchhhHhHHHHHHhccChHHHH-----------------------HHHHHHHhhcccCCCCCCCHHHHH
Q 044320           84 TH-TQQL-TEKSDIYGLGIACLYMGLYSFEYLK-----------------------RFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        84 ~~-~~~~-~~~~Dv~s~G~~l~~l~~~~~~~~~-----------------------~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                      .. +..| +.++||||.||+|+.+++|..||-+                       +.++|+.+|+..||+.|.|+++|+
T Consensus       182 IV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G~f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~  261 (786)
T KOG0588|consen  182 IVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRGVFEMPSNISSEAQDLLRRMLDVDPSTRITTEEIL  261 (786)
T ss_pred             hhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcCcccCCCcCCHHHHHHHHHHhccCccccccHHHHh
Confidence            54 5555 6799999999999999999999843                       588999999999999999999998


Q ss_pred             HHH
Q 044320          139 RQL  141 (176)
Q Consensus       139 ~~l  141 (176)
                      ++-
T Consensus       262 kHP  264 (786)
T KOG0588|consen  262 KHP  264 (786)
T ss_pred             hCc
Confidence            863

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.91  E-value=2.1e-24  Score=159.49  Aligned_cols=135  Identities=19%  Similarity=0.343  Sum_probs=108.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Cccccc-eeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHV-SIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~-~~~~   81 (176)
                      ...+++.+++.++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||.+.........   ...+.. +.++
T Consensus        96 ~~~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~P  172 (260)
T cd05073          96 GSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAP  172 (260)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHhCC---ccccccCcceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCH
Confidence            456889999999999999999999998   999999999999999999999999988654432211   111112 2333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||+++|++.+ +..||.                        ..+.+++.+||..+|++||++.+
T Consensus       173 E~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~  252 (260)
T cd05073         173 EAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEY  252 (260)
T ss_pred             hHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHcccCcccCcCHHH
Confidence            33445667889999999999999987 555542                        35788999999999999999999


Q ss_pred             HHHHHHh
Q 044320          137 VARQLEN  143 (176)
Q Consensus       137 i~~~l~~  143 (176)
                      +.+.|+.
T Consensus       253 l~~~L~~  259 (260)
T cd05073         253 IQSVLDD  259 (260)
T ss_pred             HHHHHhc
Confidence            9999875

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.91  E-value=2.6e-24  Score=157.88  Aligned_cols=134  Identities=19%  Similarity=0.250  Sum_probs=106.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC---ccccc-eeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING---VVGHV-SIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~---~~~~~-~~~~   81 (176)
                      ...+++.+++.++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++..........   ..+.. +.++
T Consensus        87 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aP  163 (250)
T cd05085          87 KDELKTKQLVKFALDAAAGMAYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAP  163 (250)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcccccCH
Confidence            346899999999999999999999999   9999999999999999999999999886543221111   11112 3333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||+++|++.+ +..||                        +..+.+++.+|+..+|++||++.+
T Consensus       164 E~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  243 (250)
T cd05085         164 EALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVEKGYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSE  243 (250)
T ss_pred             HHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHH
Confidence            33445678889999999999999976 54443                        246889999999999999999999


Q ss_pred             HHHHHH
Q 044320          137 VARQLE  142 (176)
Q Consensus       137 i~~~l~  142 (176)
                      +++.|.
T Consensus       244 l~~~l~  249 (250)
T cd05085         244 LQKELA  249 (250)
T ss_pred             HHHHhc
Confidence            998874

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=8.8e-25  Score=169.92  Aligned_cols=123  Identities=21%  Similarity=0.242  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----CccccceeeecCCC---
Q 044320           13 MRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIVVKGTH---   85 (176)
Q Consensus        13 ~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~~~~~---   85 (176)
                      .++.|..|++.++.++|.+|   |||.||||.|+|+ -.|.+||+|||++.-.......    ...|+..|+.|+..   
T Consensus       461 ~lk~ywkqML~aV~~IH~~g---IVHSDLKPANFLl-VkG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~  536 (677)
T KOG0596|consen  461 FLKFYWKQMLLAVKTIHQHG---IVHSDLKPANFLL-VKGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDM  536 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHhc---eeecCCCcccEEE-EeeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhc
Confidence            78889999999999999999   9999999999987 4578999999999877654432    34566666655543   


Q ss_pred             ---------CCCCCcccchhhHhHHHHHHhccChHHHH---------------------------HHHHHHHhhcccCCC
Q 044320           86 ---------TQQLTEKSDIYGLGIACLYMGLYSFEYLK---------------------------RFMSLALKYCEDETK  129 (176)
Q Consensus        86 ---------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~---------------------------~l~~l~~~~~~~~p~  129 (176)
                               ..+.+.++||||+||++|+|..+..||.+                           ++.++++.|+..||+
T Consensus       537 ~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp~~~~~~~li~~mK~CL~rdPk  616 (677)
T KOG0596|consen  537 SSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAITDPNHEIEFPDIPENDELIDVMKCCLARDPK  616 (677)
T ss_pred             cccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhcCCCccccccCCCCchHHHHHHHHHHhcCcc
Confidence                     22367899999999999999999988843                           388999999999999


Q ss_pred             CCCCHHHHHH
Q 044320          130 ARPSMLEVAR  139 (176)
Q Consensus       130 ~Rp~~~~i~~  139 (176)
                      +||++.++++
T Consensus       617 kR~si~eLLq  626 (677)
T KOG0596|consen  617 KRWSIPELLQ  626 (677)
T ss_pred             cCCCcHHHhc
Confidence            9999998875

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.91  E-value=2.4e-24  Score=158.18  Aligned_cols=134  Identities=22%  Similarity=0.274  Sum_probs=106.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC----ccccc-eee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING----VVGHV-SIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~----~~~~~-~~~   80 (176)
                      ...+++..++.++.+++.||.|+|+++   ++|+|++|+||+++.++.++++|||.+..........    ..... +.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~lH~~~---i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~  163 (251)
T cd05041          87 KNRLTVKKLLQMSLDAAAGMEYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTA  163 (251)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---EehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCC
Confidence            446889999999999999999999999   9999999999999999999999999987543211111    11111 233


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++|+||||+++|++.+ +..+|                        +..+.+++.+||..+|.+||++.
T Consensus       164 PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~  243 (251)
T cd05041         164 PEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIESGYRMPAPQLCPEEIYRLMLQCWAYDPENRPSFS  243 (251)
T ss_pred             hHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHhccChhhCcCHH
Confidence            333446678899999999999999987 44433                        24688899999999999999999


Q ss_pred             HHHHHHH
Q 044320          136 EVARQLE  142 (176)
Q Consensus       136 ~i~~~l~  142 (176)
                      ++++.|+
T Consensus       244 ell~~l~  250 (251)
T cd05041         244 EIYNELQ  250 (251)
T ss_pred             HHHHHhh
Confidence            9999886

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.91  E-value=1e-24  Score=161.58  Aligned_cols=133  Identities=19%  Similarity=0.256  Sum_probs=106.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      +..+++.++..++.|++.||.|||+.+   ++|+|++|.||+++.++.++++|||++........  ....+...+.+|+
T Consensus       100 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE  176 (267)
T cd06646         100 TGPLSELQIAYVCRETLQGLAYLHSKG---KMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPE  176 (267)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCCEEECcCccceeecccccccCccccCccccCHh
Confidence            456899999999999999999999999   99999999999999999999999999876542221  1222333444444


Q ss_pred             CC----CCCCCcccchhhHhHHHHHHhccChHH----------------------------HHHHHHHHHhhcccCCCCC
Q 044320           84 TH----TQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------LKRFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~~----~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------~~~l~~l~~~~~~~~p~~R  131 (176)
                      ..    ...++.++|+||+|+++|++.++..|+                            +..+.+++.+||..+|++|
T Consensus       177 ~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  256 (267)
T cd06646         177 VAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKR  256 (267)
T ss_pred             HcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhC
Confidence            32    344678999999999999997766554                            2357899999999999999


Q ss_pred             CCHHHHHHHH
Q 044320          132 PSMLEVARQL  141 (176)
Q Consensus       132 p~~~~i~~~l  141 (176)
                      |+++++++.+
T Consensus       257 p~~~~il~~l  266 (267)
T cd06646         257 PTAERLLTHL  266 (267)
T ss_pred             cCHHHHhcCC
Confidence            9999988653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.91  E-value=8.8e-25  Score=172.11  Aligned_cols=126  Identities=18%  Similarity=0.140  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe-CCCCCeEEeecCCcccCCCCCCCCccccceeeecCCCCCCCC
Q 044320           12 AMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL-DSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHTQQLT   90 (176)
Q Consensus        12 ~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~-~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (176)
                      .++..++++|+.++.|||.+|   +|||||||+|||+ ++.+.++++|||.++..............+.+++......++
T Consensus       415 ~e~~~w~~~lv~Av~~LH~~g---vvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp~~t~~y~APEvl~~~~yt  491 (612)
T KOG0603|consen  415 SEASQWAAELVSAVDYLHEQG---VVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTPALTLQYVAPEVLAIQEYT  491 (612)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC---eeecCCChhheeecCCCCcEEEEEechhhhCchhhcccchhhcccChhhhccCCCC
Confidence            788899999999999999999   9999999999999 588999999999988766552111222223344445578899


Q ss_pred             cccchhhHhHHHHHHhccChHHH----------------------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320           91 EKSDIYGLGIACLYMGLYSFEYL----------------------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus        91 ~~~Dv~s~G~~l~~l~~~~~~~~----------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                      .++|+||||++||+|++|..+|.                      ...++++.+|++.+|.+|+++.++...
T Consensus       492 ~acD~WSLGvlLy~ML~G~tp~~~~P~~~ei~~~i~~~~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h  563 (612)
T KOG0603|consen  492 EACDWWSLGVLLYEMLTGRTLFAAHPAGIEIHTRIQMPKFSECVSDEAKDLLQQLLQVDPALRLGADEIGAH  563 (612)
T ss_pred             cchhhHHHHHHHHHHHhCCCccccCCchHHHHHhhcCCccccccCHHHHHHHHHhccCChhhCcChhhhccC
Confidence            99999999999999999888763                      347899999999999999999988654

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.91  E-value=3.4e-24  Score=160.10  Aligned_cols=132  Identities=22%  Similarity=0.251  Sum_probs=105.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++.......  .....+...+.+|+
T Consensus        97 ~~~l~~~~~~~~~~qi~~~L~~LH~~~---i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  173 (282)
T cd06643          97 ERPLTEPQIRVVCKQTLEALNYLHENK---IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPE  173 (282)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCcccEEEccCCCEEEccccccccccccccccccccccccccCHh
Confidence            457999999999999999999999999   9999999999999999999999999886543221  11122333344444


Q ss_pred             CC------CCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCC
Q 044320           84 TH------TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~~------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                      ..      ...++.++|+||+||++|++.++..||.                          ..+.+++.+||..+|.+|
T Consensus       174 ~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  253 (282)
T cd06643         174 VVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDAR  253 (282)
T ss_pred             hccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhC
Confidence            32      4456789999999999999987776542                          358899999999999999


Q ss_pred             CCHHHHHHH
Q 044320          132 PSMLEVARQ  140 (176)
Q Consensus       132 p~~~~i~~~  140 (176)
                      |++.++++.
T Consensus       254 p~~~~il~~  262 (282)
T cd06643         254 WTTTQLLQH  262 (282)
T ss_pred             cCHHHHhcC
Confidence            999887643

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=3e-25  Score=169.45  Aligned_cols=131  Identities=18%  Similarity=0.174  Sum_probs=104.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      +..+++.++..++.|++.||+|||+.+   ++||||||+||+++.++.++|+|||++.......  .....|...+.+|+
T Consensus        90 ~~~~~~~~~~~~~~qil~al~~LH~~~---ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE  166 (330)
T cd05586          90 EGRFSEDRAKFYIAELVLALEHLHKYD---IVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPE  166 (330)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCccCccCCccccCHH
Confidence            456899999999999999999999999   9999999999999999999999999987543222  22233555555555


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCC----
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPS----  133 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~----  133 (176)
                      ..  ...++.++||||+||++|+|.++..||                        ...+.+++.+||..+|.+||+    
T Consensus       167 ~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~  246 (330)
T cd05586         167 VLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKVRFPKNVLSDEGRQFVKGLLNRNPQHRLGAHRD  246 (330)
T ss_pred             HHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHHHCCCCCCC
Confidence            43  335789999999999999998887664                        234678999999999999984    


Q ss_pred             HHHHHH
Q 044320          134 MLEVAR  139 (176)
Q Consensus       134 ~~~i~~  139 (176)
                      +.++++
T Consensus       247 ~~~ll~  252 (330)
T cd05586         247 AVELKE  252 (330)
T ss_pred             HHHHhc
Confidence            555544

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.91  E-value=6.1e-25  Score=158.55  Aligned_cols=135  Identities=19%  Similarity=0.343  Sum_probs=110.5

Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCcccccee
Q 044320            2 TSRFRRSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSI   79 (176)
Q Consensus         2 ~~~~~~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~   79 (176)
                      ..+.+.++++.-+=++...+..||.||-. ++   ++|||+||+|||+|..|.+|++|||++.++-.... ....|-+.|
T Consensus       181 lkrik~piPE~ilGk~tva~v~AL~YLKeKH~---viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAhtrsAGC~~Y  257 (391)
T KOG0983|consen  181 LKRIKGPIPERILGKMTVAIVKALYYLKEKHG---VIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKAHTRSAGCAAY  257 (391)
T ss_pred             HHHhcCCchHHhhhhhHHHHHHHHHHHHHhcc---eeecccCccceEEccCCCEEeecccccceeecccccccccCCccc
Confidence            34667788988888999999999999976 44   99999999999999999999999999988765432 333455555


Q ss_pred             eecCCC----CCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCC
Q 044320           80 VVKGTH----TQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDET  128 (176)
Q Consensus        80 ~~~~~~----~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p  128 (176)
                      ++|+..    ...|..++||||||+.++|+.++.+||.                           ..+++++..|+..|+
T Consensus       258 MaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~ePP~L~~~~gFSp~F~~fv~~CL~kd~  337 (391)
T KOG0983|consen  258 MAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEEPPLLPGHMGFSPDFQSFVKDCLTKDH  337 (391)
T ss_pred             cCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcCCCCCCcccCcCHHHHHHHHHHhhcCc
Confidence            555443    4568889999999999999988887763                           358899999999999


Q ss_pred             CCCCCHHHHHH
Q 044320          129 KARPSMLEVAR  139 (176)
Q Consensus       129 ~~Rp~~~~i~~  139 (176)
                      .+||...++++
T Consensus       338 r~RP~Y~~Ll~  348 (391)
T KOG0983|consen  338 RKRPKYNKLLE  348 (391)
T ss_pred             ccCcchHHHhc
Confidence            99999887765

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=2.8e-24  Score=158.74  Aligned_cols=131  Identities=23%  Similarity=0.264  Sum_probs=105.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----CCccccceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----NGVVGHVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~~   81 (176)
                      ..+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||.+........     ....+...+.+
T Consensus        99 ~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  175 (263)
T cd06625          99 GALTETVTRKYTRQILEGVEYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMS  175 (263)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccC
Confidence            45888999999999999999999999   99999999999999999999999999875432211     11223333433


Q ss_pred             c-CCCCCCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           82 K-GTHTQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 ~-~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      | ...+..++.++|+||+|+++|++.++..||.                         ..+.+++.+||..+|.+||++.
T Consensus       176 PE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~  255 (263)
T cd06625         176 PEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAE  255 (263)
T ss_pred             cceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchHHHHHHHhccCCCCCCCccCCHHHHHHHHHHhhcCcccCCCHH
Confidence            3 3445668899999999999999988877652                         3478899999999999999999


Q ss_pred             HHHHH
Q 044320          136 EVARQ  140 (176)
Q Consensus       136 ~i~~~  140 (176)
                      ++++.
T Consensus       256 ~ll~~  260 (263)
T cd06625         256 ELLRH  260 (263)
T ss_pred             HHhhC
Confidence            98764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.91  E-value=3.5e-24  Score=159.70  Aligned_cols=130  Identities=17%  Similarity=0.108  Sum_probs=104.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~~   84 (176)
                      +..+++.+++.++.|++.||+|||+.+   ++|+||+|+||+++. +.++++|||.+........ ....+...+.+|+.
T Consensus        94 ~~~~~~~~~~~~~~qi~~~L~~LH~~~---i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~  169 (282)
T cd07831          94 KRPLPEKRVKSYMYQLLKSLDHMHRNG---IFHRDIKPENILIKD-DILKLADFGSCRGIYSKPPYTEYISTRWYRAPEC  169 (282)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecccCHHHEEEcC-CCeEEEecccccccccCCCcCCCCCCcccCChhH
Confidence            356899999999999999999999999   999999999999999 9999999999876543322 12223344444443


Q ss_pred             -C-CCCCCcccchhhHhHHHHHHhccChHH--------------------------------------------------
Q 044320           85 -H-TQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------------------------------  112 (176)
Q Consensus        85 -~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------------------------------  112 (176)
                       . ...++.++|+||+||++|++.++..+|                                                  
T Consensus       170 ~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (282)
T cd07831         170 LLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLP  249 (282)
T ss_pred             hhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHcc
Confidence             2 345688999999999999998765433                                                  


Q ss_pred             --HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 --LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 --~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                        +..+.+++.+||..+|++||++.++++
T Consensus       250 ~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         250 NASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             cccHHHHHHHHHHhccCcccccCHHHHhh
Confidence              245788999999999999999999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.91  E-value=2.7e-24  Score=160.56  Aligned_cols=131  Identities=18%  Similarity=0.156  Sum_probs=104.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+|+
T Consensus        94 ~~~~~~~~~~~~~~ql~~~l~~LH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE  170 (286)
T cd07847          94 PRGVPEHLIKKIIWQTLQAVNFCHKHN---CIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPE  170 (286)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCChhhEEEcCCCcEEECccccceecCCCcccccCcccccccCCHH
Confidence            346899999999999999999999999   99999999999999999999999999876544321  1112223333333


Q ss_pred             C-C-CCCCCcccchhhHhHHHHHHhccChHHH------------------------------------------------
Q 044320           84 T-H-TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------------  113 (176)
Q Consensus        84 ~-~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------------  113 (176)
                      . . ...++.++|+||+|+++|++.++..||.                                                
T Consensus       171 ~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (286)
T cd07847         171 LLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLES  250 (286)
T ss_pred             HHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHH
Confidence            3 2 2457889999999999999988765431                                                


Q ss_pred             ------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 ------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                            ..+.+++.+||..+|++||++.+++.
T Consensus       251 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         251 KFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             HhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence                  23668999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.91  E-value=2.6e-24  Score=159.38  Aligned_cols=131  Identities=19%  Similarity=0.272  Sum_probs=105.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.+++.++.|++.|+.|||+.+   ++|+||+|+||+++.++.++++|||++.......  .....+...+.+|+
T Consensus       100 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  176 (267)
T cd06645         100 TGPLSESQIAYVSRETLQGLYYLHSKG---KMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPE  176 (267)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECcceeeeEccCcccccccccCcccccChh
Confidence            456899999999999999999999999   9999999999999999999999999986543221  11223444455554


Q ss_pred             CC----CCCCCcccchhhHhHHHHHHhccChHHH----------------------------HHHHHHHHhhcccCCCCC
Q 044320           84 TH----TQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~~----~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                      ..    ...++.++|+||+||++|++.++..|+.                            ..+.+++.+|+..+|++|
T Consensus       177 ~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  256 (267)
T cd06645         177 VAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKR  256 (267)
T ss_pred             hhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhC
Confidence            32    4457889999999999999988765542                            246789999999999999


Q ss_pred             CCHHHHHH
Q 044320          132 PSMLEVAR  139 (176)
Q Consensus       132 p~~~~i~~  139 (176)
                      |++.++++
T Consensus       257 ~~~~~ll~  264 (267)
T cd06645         257 PTAEKLLQ  264 (267)
T ss_pred             cCHHHHhc
Confidence            99998875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.91  E-value=2.9e-24  Score=164.87  Aligned_cols=142  Identities=19%  Similarity=0.223  Sum_probs=111.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH-   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~-   85 (176)
                      ..++++++..++.|++.||+|||+.+   ++||||+|+||+++.++.++++|||+++....... ...+...+.+|+.. 
T Consensus       112 ~~~~~~~~~~~~~qi~~aL~~LH~~~---i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~~~-~~~~~~~y~aPE~~~  187 (342)
T cd07879         112 HPLSEDKVQYLVYQMLCGLKYIHSAG---IIHRDLKPGNLAVNEDCELKILDFGLARHADAEMT-GYVVTRWYRAPEVIL  187 (342)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEeeCCCCcCCCCCCC-CceeeecccChhhhc
Confidence            46899999999999999999999999   99999999999999999999999999876543222 22233344444433 


Q ss_pred             C-CCCCcccchhhHhHHHHHHhccChHHH---------------------------------------------------
Q 044320           86 T-QQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------------------------------  113 (176)
Q Consensus        86 ~-~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------------------------------  113 (176)
                      . ..++.++|+||||+++|++.++..+|.                                                   
T Consensus       188 ~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (342)
T cd07879         188 NWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFP  267 (342)
T ss_pred             CccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhc
Confidence            2 457889999999999999988765431                                                   


Q ss_pred             ---HHHHHHHHhhcccCCCCCCCHHHHHHH--HHhhhhcCCCCC
Q 044320          114 ---KRFMSLALKYCEDETKARPSMLEVARQ--LENISSMLPESD  152 (176)
Q Consensus       114 ---~~l~~l~~~~~~~~p~~Rp~~~~i~~~--l~~~~~~~~~~~  152 (176)
                         ..+.+++.+||..+|++||++.+++..  ++.+....+...
T Consensus       268 ~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~~~~~~~  311 (342)
T cd07879         268 KASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRDADEETE  311 (342)
T ss_pred             CCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhcccccccCC
Confidence               236689999999999999999999844  777766544443

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.91  E-value=3.9e-24  Score=159.70  Aligned_cols=132  Identities=20%  Similarity=0.198  Sum_probs=106.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC---CCCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN---INGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~   82 (176)
                      ...+++.+++.++.|++.||+|||+.+   ++|+||+|+||+++.++.++++|||.+.......   .....+..++.+|
T Consensus        93 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aP  169 (286)
T cd07832          93 ERPLPEAQVKSYMRMLLKGVAYMHANG---IMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAP  169 (286)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCccccccCcccccCc
Confidence            356999999999999999999999999   9999999999999999999999999987765433   2223344445555


Q ss_pred             CCC--CCCCCcccchhhHhHHHHHHhccChHH------------------------------------------------
Q 044320           83 GTH--TQQLTEKSDIYGLGIACLYMGLYSFEY------------------------------------------------  112 (176)
Q Consensus        83 ~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------------------------  112 (176)
                      +..  ...++.++||||+|++++++.++..+|                                                
T Consensus       170 E~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (286)
T cd07832         170 ELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEE  249 (286)
T ss_pred             eeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHH
Confidence            443  344688999999999999998775433                                                


Q ss_pred             -----HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 -----LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 -----~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                           ...+.+++.+|+..+|.+||++.++++.
T Consensus       250 ~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h  282 (286)
T cd07832         250 IFPDASPEALDLLKGLLVYDPSKRLSAAEALRH  282 (286)
T ss_pred             hCCCccHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence                 2456789999999999999999988753

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.91  E-value=5.4e-24  Score=157.16  Aligned_cols=131  Identities=21%  Similarity=0.224  Sum_probs=102.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCC--------eEEeecCCcccCCCCCCCCccccc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFT--------PKVFDFEISRLAPVPNINGVVGHV   77 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~--------~~l~dfg~~~~~~~~~~~~~~~~~   77 (176)
                      +..+++..++.++.|++.||+|||+.+   ++||||||+||+++.++.        ++++|||.+........  ..+..
T Consensus        94 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~~~--~~~~~  168 (258)
T cd05078          94 KNLINISWKLEVAKQLAWALHFLEDKG---LTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKEI--LLERI  168 (258)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCccceEEEecccccccCCCceEEecccccccccCCchh--ccccC
Confidence            446899999999999999999999999   999999999999977654        69999998765433221  12223


Q ss_pred             eeeecCCC-C-CCCCcccchhhHhHHHHHHhccC-hHH----------------------HHHHHHHHHhhcccCCCCCC
Q 044320           78 SIVVKGTH-T-QQLTEKSDIYGLGIACLYMGLYS-FEY----------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        78 ~~~~~~~~-~-~~~~~~~Dv~s~G~~l~~l~~~~-~~~----------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      .+.+|+.. . ..++.++|+||||+++|++.++. .++                      ..++.+++.+||+.+|++||
T Consensus       169 ~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  248 (258)
T cd05078         169 PWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKKLQFYEDRHQLPAPKWTELANLINQCMDYEPDFRP  248 (258)
T ss_pred             CccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHHHHHHHccccCCCCCcHHHHHHHHHHhccChhhCC
Confidence            33344333 2 45788999999999999998873 332                      13478899999999999999


Q ss_pred             CHHHHHHHH
Q 044320          133 SMLEVARQL  141 (176)
Q Consensus       133 ~~~~i~~~l  141 (176)
                      ++.++++.|
T Consensus       249 s~~~il~~l  257 (258)
T cd05078         249 SFRAIIRDL  257 (258)
T ss_pred             CHHHHHHhc
Confidence            999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.91  E-value=4.5e-24  Score=159.10  Aligned_cols=133  Identities=23%  Similarity=0.207  Sum_probs=101.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-------CeEEeecCCcccCCCCCCCCccccc
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF-------TPKVFDFEISRLAPVPNINGVVGHV   77 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~-------~~~l~dfg~~~~~~~~~~~~~~~~~   77 (176)
                      .+..+++..++.++.|++.||+|+|+++   ++||||||+||+++..+       .++++|||.+........ ......
T Consensus       110 ~~~~~~~~~~~~i~~qi~~~l~~lH~~~---iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~~~-~~~~~~  185 (274)
T cd05076         110 EKGRVPVAWKITVAQQLASALSYLEDKN---LVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREE-RVERIP  185 (274)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHcCC---ccCCCCCcccEEEeccCcccCccceeeecCCccccccccccc-cccCCc
Confidence            3557899999999999999999999998   99999999999997543       479999998754322211 111122


Q ss_pred             eeeecCCC-CCCCCcccchhhHhHHHHHHh-ccChHHH----------------------HHHHHHHHhhcccCCCCCCC
Q 044320           78 SIVVKGTH-TQQLTEKSDIYGLGIACLYMG-LYSFEYL----------------------KRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        78 ~~~~~~~~-~~~~~~~~Dv~s~G~~l~~l~-~~~~~~~----------------------~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      +.+++... ...++.++|+||||+++||+. .+..|+.                      ..+.+++.+||..+|++||+
T Consensus       186 ~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps  265 (274)
T cd05076         186 WIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKERFYEKKHRLPEPSCKELATLISQCLTYEPTQRPS  265 (274)
T ss_pred             ccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHHHHHHHhccCCCCCCChHHHHHHHHHcccChhhCcC
Confidence            33333333 356788999999999999984 3444331                      34789999999999999999


Q ss_pred             HHHHHHHH
Q 044320          134 MLEVARQL  141 (176)
Q Consensus       134 ~~~i~~~l  141 (176)
                      +.++++.|
T Consensus       266 ~~~il~~L  273 (274)
T cd05076         266 FRTILRDL  273 (274)
T ss_pred             HHHHHHhh
Confidence            99999877

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.91  E-value=3.6e-24  Score=162.09  Aligned_cols=133  Identities=23%  Similarity=0.350  Sum_probs=106.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKG-   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~-   83 (176)
                      ...+++..+..++.|++.||.|||+ .+   ++|+||+|+||+++.++.++++|||++............+...+.+++ 
T Consensus        93 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~aPE~  169 (308)
T cd06615          93 AGRIPENILGKISIAVLRGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPER  169 (308)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhhCC---EEECCCChHHEEEecCCcEEEccCCCcccccccccccCCCCcCccChhH
Confidence            3568999999999999999999997 57   999999999999999999999999988765433222233333333333 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHH---------------------------------------------------
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------------------  112 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------------------  112 (176)
                      ..+..++.++|+||||+++|++.++..||                                                   
T Consensus       170 ~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (308)
T cd06615         170 LQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNE  249 (308)
T ss_pred             hcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcC
Confidence            34566888999999999999998876553                                                   


Q ss_pred             ----------HHHHHHHHHhhcccCCCCCCCHHHHHHHH
Q 044320          113 ----------LKRFMSLALKYCEDETKARPSMLEVARQL  141 (176)
Q Consensus       113 ----------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l  141 (176)
                                ...+.+++.+||..+|++||++.++++.-
T Consensus       250 ~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~  288 (308)
T cd06615         250 PPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHP  288 (308)
T ss_pred             CCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcCh
Confidence                      23577999999999999999999988763

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.91  E-value=1.8e-24  Score=161.62  Aligned_cols=132  Identities=16%  Similarity=0.135  Sum_probs=106.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      ...+++.++..++.|++.||.|+|+.+   ++|+||||+||+++.++.++++|||++............+...+.+++..
T Consensus        91 ~~~l~~~~~~~i~~qi~~al~~lH~~~---ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~  167 (279)
T cd05633          91 HGVFSEKEMRFYATEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVL  167 (279)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---cCCCCCCHHHEEECCCCCEEEccCCcceeccccCccCcCCCcCccCHHHh
Confidence            356899999999999999999999999   99999999999999999999999999865543333233344445444433


Q ss_pred             --CCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCC-----
Q 044320           86 --TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARP-----  132 (176)
Q Consensus        86 --~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp-----  132 (176)
                        +..++.++|+||+|+++|++.++..||.                          ..+.+++.+|+..+|.+||     
T Consensus       168 ~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~  247 (279)
T cd05633         168 QKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGR  247 (279)
T ss_pred             cCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHhhcCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCC
Confidence              3457889999999999999988777652                          2467899999999999999     


Q ss_pred             CHHHHHHH
Q 044320          133 SMLEVARQ  140 (176)
Q Consensus       133 ~~~~i~~~  140 (176)
                      ++.++++.
T Consensus       248 ~~~~~~~h  255 (279)
T cd05633         248 GAQEVKEH  255 (279)
T ss_pred             CHHHHHhC
Confidence            58877663

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.91  E-value=4e-25  Score=167.99  Aligned_cols=128  Identities=20%  Similarity=0.159  Sum_probs=104.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||++.......  .....|...+.+|+
T Consensus        92 ~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE  168 (318)
T cd05582          92 EVMFTEEDVKFYLAELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPE  168 (318)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCceecccCChhhcCHH
Confidence            456899999999999999999999999   9999999999999999999999999987654331  12223444444444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      . ....++.++|+||||+++|+|.++..||.                       ..+.+++.+||+.+|++||++.+
T Consensus       169 ~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         169 VVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             HHcCCCCCCccceeccceEeeeeccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence            3 35667889999999999999988877652                       35788999999999999999543

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.91  E-value=2.4e-24  Score=161.67  Aligned_cols=131  Identities=18%  Similarity=0.188  Sum_probs=104.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.+++.++.|++.||+|||+.+   ++|+||+|+||+++.++.++++|||++.......  .....+...+.+|+
T Consensus       100 ~~~l~~~~~~~i~~qi~~aL~~LH~~~---i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE  176 (293)
T cd07843         100 KQPFLQSEVKCLMLQLLSGVAHLHDNW---ILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPE  176 (293)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHHHEEECCCCcEEEeecCceeeccCCccccccccccccccCch
Confidence            346999999999999999999999999   9999999999999999999999999987655432  11122233344444


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHH-------------------------------------------------
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------------  112 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------------  112 (176)
                      ..  ...++.++|+||+|+++|++.++..+|                                                 
T Consensus       177 ~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (293)
T cd07843         177 LLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKK  256 (293)
T ss_pred             hhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhcc
Confidence            33  234688999999999999998875432                                                 


Q ss_pred             ------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                            .+.+.+++.+||..+|++||++.++++
T Consensus       257 ~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         257 FPALSLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             ccccCCChHHHHHHHHHhccCccccCCHHHHhc
Confidence                  334678999999999999999999875

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.91  E-value=5.2e-25  Score=167.87  Aligned_cols=127  Identities=20%  Similarity=0.188  Sum_probs=103.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC--CCCCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV--PNINGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~--~~~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||+++....  .......|...+.+|+
T Consensus        90 ~~~~~~~~~~~~~~qi~~al~~lH~~g---ivH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE  166 (325)
T cd05604          90 ERSFPEPRARFYAAEIASALGYLHSIN---IVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPE  166 (325)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCcccccCChhhCCHH
Confidence            457899999999999999999999999   99999999999999999999999999865322  1122223444444444


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                       .....++.++||||+||++|+|.++..||.                       ..+.+++.+|+..+|.+||++.
T Consensus       167 ~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~  242 (325)
T cd05604         167 VIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKPLVLRPGASLTAWSILEELLEKDRQRRLGAK  242 (325)
T ss_pred             HHcCCCCCCcCccccccceehhhhcCCCCCCCCCHHHHHHHHHcCCccCCCCCCHHHHHHHHHHhccCHHhcCCCC
Confidence             346678899999999999999998887752                       2366899999999999999875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.91  E-value=3.9e-24  Score=159.62  Aligned_cols=131  Identities=24%  Similarity=0.344  Sum_probs=104.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcC-CCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTE-ADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~-~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~   83 (176)
                      +..+++++++.++.|++.||.|||++ +   ++|+||+|+||+++.++.++++|||.+........ ....+...+.+|+
T Consensus        97 ~~~~~~~~~~~~~~qi~~~l~~lH~~~~---i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE  173 (283)
T cd06617          97 GLTIPEDILGKIAVSIVKALEYLHSKLS---VIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDAGCKPYMAPE  173 (283)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeecccccccccccccccccCCccccChh
Confidence            45799999999999999999999987 8   99999999999999999999999999876533221 1122333333443


Q ss_pred             CC-----CCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           84 TH-----TQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        84 ~~-----~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      ..     ...++.++|+||+|+++|++.++..||                          +..+.+++.+||..+|++||
T Consensus       174 ~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp  253 (283)
T cd06617         174 RINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEPSPQLPAEKFSPEFQDFVNKCLKKNYKERP  253 (283)
T ss_pred             hcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCc
Confidence            32     245688999999999999998876554                          23578899999999999999


Q ss_pred             CHHHHHH
Q 044320          133 SMLEVAR  139 (176)
Q Consensus       133 ~~~~i~~  139 (176)
                      ++.++++
T Consensus       254 ~~~~il~  260 (283)
T cd06617         254 NYPELLQ  260 (283)
T ss_pred             CHHHHhc
Confidence            9999876

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.91  E-value=3.4e-24  Score=157.59  Aligned_cols=132  Identities=20%  Similarity=0.298  Sum_probs=107.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--CccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~~   83 (176)
                      +..+++.+++.++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||.++........  ...+...+.+|+
T Consensus        95 ~~~~~~~~~~~i~~~l~~al~~lH~~~---i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE  171 (256)
T cd08529          95 GRPLPEDQVWRFFIQILLGLAHLHSKK---ILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPE  171 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEEeCCCCEEEcccccceeccCccchhhccccCccccCHH
Confidence            467899999999999999999999998   999999999999999999999999988765433221  112333344444


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                       .....++.++|+||||+++|++.++..||                        ...+.+++.+||+.+|++||++.+++
T Consensus       172 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll  251 (256)
T cd08529         172 LCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGALILKIIRGVFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLL  251 (256)
T ss_pred             HhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCHHHHHHHHHHccCCcccCcCHHHHh
Confidence             34566788999999999999998877654                        23588999999999999999999987


Q ss_pred             HH
Q 044320          139 RQ  140 (176)
Q Consensus       139 ~~  140 (176)
                      +.
T Consensus       252 ~~  253 (256)
T cd08529         252 RN  253 (256)
T ss_pred             hC
Confidence            63

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.91  E-value=2.4e-24  Score=168.55  Aligned_cols=133  Identities=23%  Similarity=0.317  Sum_probs=112.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccc-----eeeecC
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHV-----SIVVKG   83 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~-----~~~~~~   83 (176)
                      +.-+....|+.||+.|++||.+.+   |||||+.++|+|++.++++|++|||.++-....+++...|..     |.+++.
T Consensus       634 ~~t~~~vsi~tqiasgmaYLes~n---fVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEs  710 (807)
T KOG1094|consen  634 AETAPGVSICTQIASGMAYLESLN---FVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWES  710 (807)
T ss_pred             cccchhHHHHHHHHHHHHHHHhhc---hhhccccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHH
Confidence            344567789999999999999999   999999999999999999999999999987777776665544     334444


Q ss_pred             CCCCCCCcccchhhHhHHHHHH---------------------------------hccChHHHHHHHHHHHhhcccCCCC
Q 044320           84 THTQQLTEKSDIYGLGIACLYM---------------------------------GLYSFEYLKRFMSLALKYCEDETKA  130 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l---------------------------------~~~~~~~~~~l~~l~~~~~~~~p~~  130 (176)
                      +.-++|++++|+|+||+.+||+                                 +..+.-++..+.++++.||..+.++
T Consensus       711 illgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~es~~  790 (807)
T KOG1094|consen  711 ILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRRESEQ  790 (807)
T ss_pred             HHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhchhhhc
Confidence            5578999999999999999987                                 3333445667999999999999999


Q ss_pred             CCCHHHHHHHHHhh
Q 044320          131 RPSMLEVARQLENI  144 (176)
Q Consensus       131 Rp~~~~i~~~l~~~  144 (176)
                      ||+|+++...|+..
T Consensus       791 RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  791 RPSFEQLHLFLQED  804 (807)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999988754

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.91  E-value=3.1e-24  Score=157.97  Aligned_cols=133  Identities=23%  Similarity=0.296  Sum_probs=105.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC---cccccee-ee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING---VVGHVSI-VV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~---~~~~~~~-~~   81 (176)
                      ...++++.++.++.|++.|++|+|+.+   ++|+||+|+||+++.++.++++|||.+..........   ......+ ++
T Consensus        94 ~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aP  170 (256)
T cd05112          94 RGKFSQETLLGMCLDVCEGMAYLESSN---VIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSP  170 (256)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccccceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCH
Confidence            346899999999999999999999999   9999999999999999999999999886543322111   1111223 33


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||+|+++|++.+ +..||                        +..+.+++.+||..+|++||++.+
T Consensus       171 e~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~  250 (256)
T cd05112         171 EVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAGFRLYKPRLASQSVYELMQHCWKERPEDRPSFSL  250 (256)
T ss_pred             hHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcccChhhCCCHHH
Confidence            33345678889999999999999976 55543                        234788999999999999999999


Q ss_pred             HHHHH
Q 044320          137 VARQL  141 (176)
Q Consensus       137 i~~~l  141 (176)
                      +++.|
T Consensus       251 ~l~~l  255 (256)
T cd05112         251 LLHQL  255 (256)
T ss_pred             HHHhh
Confidence            99876

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.91  E-value=2.7e-24  Score=162.13  Aligned_cols=131  Identities=20%  Similarity=0.243  Sum_probs=104.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      +..+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+|+
T Consensus        98 ~~~~~~~~~~~~~~qi~~aL~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE  174 (301)
T cd07873          98 GNSINMHNVKLFLFQLLRGLNYCHRRK---VLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPD  174 (301)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCcccccceeecccCcH
Confidence            456899999999999999999999999   99999999999999999999999999875432221  1122333444444


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHHH------------------------------------------------
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------------  113 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------------  113 (176)
                      ..  ...++.++||||+|+++|+|.++..+|.                                                
T Consensus       175 ~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (301)
T cd07873         175 ILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNH  254 (301)
T ss_pred             HHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhh
Confidence            32  3457789999999999999988765541                                                


Q ss_pred             -----HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 -----KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 -----~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                           ..+.+++.+|+..+|.+|||+.++++
T Consensus       255 ~~~~~~~~~~li~~ml~~dp~~R~t~~eil~  285 (301)
T cd07873         255 APRLDSDGAELLSKLLQFEGRKRISAEEAMK  285 (301)
T ss_pred             cCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence                 13568999999999999999999876

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.91  E-value=3.6e-24  Score=157.65  Aligned_cols=132  Identities=21%  Similarity=0.284  Sum_probs=106.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      ...+++.+++.++.|++.|+.++|+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+|+
T Consensus        96 ~~~l~~~~~~~~~~~l~~~l~~lH~~~---i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE  172 (257)
T cd08223          96 GKLLPENQVVEWFVQIAMALQYLHEKH---ILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPE  172 (257)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCchhEEEecCCcEEEecccceEEecccCCccccccCCcCccChh
Confidence            456899999999999999999999999   99999999999999999999999999876543221  1122333344444


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                       .....++.++|+||+|++++++.++..+|                        ...+.+++.+||..+|+.||++.+++
T Consensus       173 ~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l  252 (257)
T cd08223         173 LFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPELGELIATMLSKRPEKRPSVKSIL  252 (257)
T ss_pred             HhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHhccCcccCCCHHHHh
Confidence             34666788999999999999997765543                        23478899999999999999999987


Q ss_pred             HH
Q 044320          139 RQ  140 (176)
Q Consensus       139 ~~  140 (176)
                      +.
T Consensus       253 ~~  254 (257)
T cd08223         253 RQ  254 (257)
T ss_pred             cC
Confidence            53

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=1.9e-24  Score=161.89  Aligned_cols=131  Identities=21%  Similarity=0.213  Sum_probs=105.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKG-   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~-   83 (176)
                      ...+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++........ ....+...+.+|+ 
T Consensus        96 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~  172 (285)
T cd05605          96 NPGFDEERAVFYAAEITCGLEDLHRER---IVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIRGRVGTVGYMAPEV  172 (285)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---cEecCCCHHHEEECCCCCEEEeeCCCceecCCCCccccccCCCCccCcHH
Confidence            356999999999999999999999999   99999999999999999999999999876543222 1223344444444 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCC----
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARP----  132 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp----  132 (176)
                      .....++.++|+||+|+++|++.++..||.                           ..+.+++.+||..+|++||    
T Consensus       173 ~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~  252 (285)
T cd05605         173 VKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQEEYSEKFSEAARSICRQLLTKDPGFRLGCRG  252 (285)
T ss_pred             hcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhhcccccCcccCHHHHHHHHHHccCCHHHhcCCCC
Confidence            346678889999999999999988777652                           2468899999999999999    


Q ss_pred             -CHHHHHH
Q 044320          133 -SMLEVAR  139 (176)
Q Consensus       133 -~~~~i~~  139 (176)
                       ++.++++
T Consensus       253 ~~~~~l~~  260 (285)
T cd05605         253 EGAEEVKA  260 (285)
T ss_pred             CCHHHHhc
Confidence             7777754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.91  E-value=5.4e-24  Score=157.86  Aligned_cols=135  Identities=17%  Similarity=0.296  Sum_probs=108.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceee-e
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIV-V   81 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~-~   81 (176)
                      ....+++..++.++.|++.||.|+|+ .+   ++|+||+|+||+++.++.++++|||.+........ ....+...+. +
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~l~~lh~~~~---i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~P  182 (269)
T cd08528         106 KKQRFTEERIWNIFVQMVLALRYLHKEKR---IVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESKLTSVVGTILYSCP  182 (269)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHhccCCc---eeecCCCHHHEEECCCCcEEEecccceeecccccccccccCcccCcCh
Confidence            34568999999999999999999995 67   99999999999999999999999999876554321 1222233333 3


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++|+||||+++|++.++..||                         ...+.+++.+||..+|.+||++.+
T Consensus       183 e~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e  262 (269)
T cd08528         183 EIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLSLATKIVEAVYEPLPEGMYSEDVTDVITSCLTPDAEARPDIIQ  262 (269)
T ss_pred             hhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHHHHHHHHhhccCCcCCcccCCHHHHHHHHHHCCCCCccCCCHHH
Confidence            3334566789999999999999998877664                         235888999999999999999999


Q ss_pred             HHHHHH
Q 044320          137 VARQLE  142 (176)
Q Consensus       137 i~~~l~  142 (176)
                      +.+.++
T Consensus       263 ~~~~~~  268 (269)
T cd08528         263 VSAMIS  268 (269)
T ss_pred             HHHHhc
Confidence            998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.91  E-value=4.7e-24  Score=179.36  Aligned_cols=132  Identities=19%  Similarity=0.146  Sum_probs=99.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-------------------CCeEEeecCCcccCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-------------------FTPKVFDFEISRLAP   66 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-------------------~~~~l~dfg~~~~~~   66 (176)
                      ...+++.+++.++.||+.||.|||+++   |+||||||+|||++..                   +.+|++|||+++...
T Consensus        74 ~~~~~~~~~~~i~~qi~~al~~lH~~g---IvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~  150 (793)
T PLN00181         74 DRSVDAFECFHVFRQIVEIVNAAHSQG---IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREE  150 (793)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhCC---eeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccc
Confidence            456999999999999999999999999   9999999999999653                   455666666654321


Q ss_pred             CCC------------------CCCccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHHH-------------
Q 044320           67 VPN------------------INGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYLK-------------  114 (176)
Q Consensus        67 ~~~------------------~~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~-------------  114 (176)
                      ...                  .....+..+|.+|+. ....++.++|||||||++|||+++..++..             
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~~~~~~~~~~~  230 (793)
T PLN00181        151 ILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSRTMSSLRHRVL  230 (793)
T ss_pred             cccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHHHHHHHHHhhc
Confidence            100                  000123445555554 577889999999999999999876655431             


Q ss_pred             ---------HHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          115 ---------RFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       115 ---------~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                               ....++.+||..+|.+||++.++++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~L~~~P~~Rps~~eil~h  265 (793)
T PLN00181        231 PPQILLNWPKEASFCLWLLHPEPSCRPSMSELLQS  265 (793)
T ss_pred             ChhhhhcCHHHHHHHHHhCCCChhhCcChHHHhhc
Confidence                     24567788999999999999999753

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.91  E-value=6.1e-25  Score=167.73  Aligned_cols=130  Identities=18%  Similarity=0.165  Sum_probs=105.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~   82 (176)
                      ...+++..+..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||++........   ....+...+.+|
T Consensus        96 ~~~l~~~~~~~~~~qi~~aL~~lH~~~---i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aP  172 (330)
T cd05601          96 EDQFDEDMAQFYLAELVLAIHSVHQMG---YVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAP  172 (330)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEcccCchHheEECCCCCEEeccCCCCeECCCCCceeeecccCCccccCH
Confidence            357999999999999999999999999   99999999999999999999999999876543321   112344445555


Q ss_pred             CCC-------CCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCC
Q 044320           83 GTH-------TQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDET  128 (176)
Q Consensus        83 ~~~-------~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p  128 (176)
                      +..       ...++.++|||||||++|+|.++..||                           ...+.+++.+|+. +|
T Consensus       173 E~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~p  251 (330)
T cd05601         173 EVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-GQ  251 (330)
T ss_pred             HHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-Ch
Confidence            433       345778999999999999998887665                           2246789999997 99


Q ss_pred             CCCCCHHHHHH
Q 044320          129 KARPSMLEVAR  139 (176)
Q Consensus       129 ~~Rp~~~~i~~  139 (176)
                      ++||++.++++
T Consensus       252 ~~R~t~~~l~~  262 (330)
T cd05601         252 KERLGYEGLCC  262 (330)
T ss_pred             hhCCCHHHHhC
Confidence            99999998875

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.91  E-value=4e-24  Score=159.72  Aligned_cols=132  Identities=18%  Similarity=0.177  Sum_probs=103.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~   82 (176)
                      .+..+++..+..++.|++.||+|||..+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+|
T Consensus        93 ~~~~l~~~~~~~~~~~i~~~l~~lh~~~---i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aP  169 (284)
T cd07860          93 PLSGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP  169 (284)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEeeccchhhcccCccccccccccccccCC
Confidence            3467899999999999999999999999   99999999999999999999999998865433221  111122333344


Q ss_pred             CCC--CCCCCcccchhhHhHHHHHHhccChHH------------------------------------------------
Q 044320           83 GTH--TQQLTEKSDIYGLGIACLYMGLYSFEY------------------------------------------------  112 (176)
Q Consensus        83 ~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------------------------  112 (176)
                      +..  ...++.++|+||||+++|++.++..+|                                                
T Consensus       170 E~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (284)
T cd07860         170 EILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKV  249 (284)
T ss_pred             eEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHH
Confidence            422  233578899999999999998886543                                                


Q ss_pred             ----HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ----LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ----~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                          ...+.+++.+||..+|.+||++.++++
T Consensus       250 ~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         250 VPPLDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             cccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence                123567999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.91  E-value=1.5e-24  Score=159.65  Aligned_cols=131  Identities=30%  Similarity=0.384  Sum_probs=106.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccC--CCCCCCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA--PVPNINGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~--~~~~~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.+||+.+   ++|+||+|+||+++.++.++++|||.+...  .........+...+.+|+
T Consensus        92 ~~~~~~~~~~~~~~qi~~~L~~Lh~~~---i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE  168 (260)
T PF00069_consen   92 NKPLSEEEILKIAYQILEALAYLHSKG---IVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPE  168 (260)
T ss_dssp             HSSBBHHHHHHHHHHHHHHHHHHHHTT---EEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHH
T ss_pred             ccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            466899999999999999999999999   999999999999999999999999998742  222222233344444444


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHHH------------------------------HHHHHHHHhhcccCCCCC
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                      ..  ...++.++|+||+|+++++|.++..++.                              ..+.+++.+||+.+|++|
T Consensus       169 ~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R  248 (260)
T PF00069_consen  169 VLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQR  248 (260)
T ss_dssp             HHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGS
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHHHHccCChhHC
Confidence            43  5778999999999999999977655431                              358899999999999999


Q ss_pred             CCHHHHHH
Q 044320          132 PSMLEVAR  139 (176)
Q Consensus       132 p~~~~i~~  139 (176)
                      |++.++++
T Consensus       249 ~~~~~l~~  256 (260)
T PF00069_consen  249 PSAEELLK  256 (260)
T ss_dssp             TTHHHHHT
T ss_pred             cCHHHHhc
Confidence            99999875

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.91  E-value=1.3e-24  Score=165.35  Aligned_cols=127  Identities=20%  Similarity=0.197  Sum_probs=102.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||+++......  .....+...+.+|+
T Consensus        90 ~~~~~~~~~~~~~~qi~~~L~~lH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  166 (321)
T cd05603          90 ERCFLEPRARFYAAEVASAIGYLHSLN---IIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPE  166 (321)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCccccccCCcccCCHH
Confidence            456889999999999999999999999   9999999999999999999999999987532221  12223444444444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      . ....++.++|+||+||++|+|.++..||.                       ..+.+++.+|++.+|.+||+..
T Consensus       167 ~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         167 VLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILHKPLQLPGGKTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             HhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHccCCHhhcCCCC
Confidence            3 46678899999999999999998888762                       2377899999999999998753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.91  E-value=2.5e-24  Score=162.13  Aligned_cols=130  Identities=22%  Similarity=0.253  Sum_probs=105.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG-   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~-   83 (176)
                      ..+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||.+........  ....+...+.+|+ 
T Consensus       111 ~~~~~~~~~~i~~ql~~aL~~LH~~g---i~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  187 (296)
T cd06654         111 TCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV  187 (296)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCEEECccccchhccccccccCcccCCccccCHHH
Confidence            35889999999999999999999999   99999999999999999999999998775432221  1122333344444 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      .....++.++|+|||||++|++.++..||.                          ..+.+++.+||..+|+.||++.++
T Consensus       188 ~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~ei  267 (296)
T cd06654         188 VTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKEL  267 (296)
T ss_pred             HcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcccCcCHHHH
Confidence            345667889999999999999988777642                          247889999999999999999999


Q ss_pred             HH
Q 044320          138 AR  139 (176)
Q Consensus       138 ~~  139 (176)
                      ++
T Consensus       268 l~  269 (296)
T cd06654         268 LQ  269 (296)
T ss_pred             hh
Confidence            87

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.91  E-value=2.1e-24  Score=158.87  Aligned_cols=133  Identities=22%  Similarity=0.272  Sum_probs=106.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--Cccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~   82 (176)
                      ....+++..++.++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||.+.........  ...+...+.+|
T Consensus        93 ~~~~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aP  169 (255)
T cd08219          93 RGKLFPEDTILQWFVQMCLGVQHIHEKR---VLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPP  169 (255)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCcceEEECCCCcEEEcccCcceeecccccccccccCCccccCH
Confidence            3456899999999999999999999999   999999999999999999999999998765433211  12233333333


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhccChHHH------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      + .....++.++|+||||+++|++.++..||.                        ..+.+++.+||..+|++||++.++
T Consensus       170 E~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~i  249 (255)
T cd08219         170 EIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKPLPSHYSYELRSLIKQMFKRNPRSRPSATTI  249 (255)
T ss_pred             HHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHHhCCcccCCCHHHH
Confidence            3 345668889999999999999987766542                        347889999999999999999998


Q ss_pred             HHH
Q 044320          138 ARQ  140 (176)
Q Consensus       138 ~~~  140 (176)
                      +..
T Consensus       250 l~~  252 (255)
T cd08219         250 LSR  252 (255)
T ss_pred             hhc
Confidence            764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.91  E-value=1.2e-23  Score=159.02  Aligned_cols=130  Identities=27%  Similarity=0.355  Sum_probs=105.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT-   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~-   84 (176)
                      ...+++.++..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++........  ..+...+.+|+. 
T Consensus       109 ~~~l~~~~~~~~~~ql~~~L~~LH~~~---i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~--~~~~~~y~aPE~~  183 (307)
T cd06607         109 KKPLQEVEIAAICHGALQGLAYLHSHE---RIHRDIKAGNILLTEPGTVKLADFGSASLVSPANS--FVGTPYWMAPEVI  183 (307)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcccEEECCCCCEEEeecCcceecCCCCC--ccCCccccCceee
Confidence            456899999999999999999999999   99999999999999999999999998866543221  122233333332 


Q ss_pred             ---CCCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           85 ---HTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        85 ---~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                         ....++.++||||||+++|++.++..+|                         ...+.+++.+||..+|.+||++.+
T Consensus       184 ~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  263 (307)
T cd06607         184 LAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEE  263 (307)
T ss_pred             eccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhcCChhhCcCHHH
Confidence               2456788999999999999998876543                         345789999999999999999999


Q ss_pred             HHHH
Q 044320          137 VARQ  140 (176)
Q Consensus       137 i~~~  140 (176)
                      ++..
T Consensus       264 il~~  267 (307)
T cd06607         264 LLKH  267 (307)
T ss_pred             HhcC
Confidence            9874

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.91  E-value=9.4e-24  Score=158.77  Aligned_cols=131  Identities=19%  Similarity=0.139  Sum_probs=105.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~~   84 (176)
                      ..+++.+++.++.|++.||.|||+++   ++|+||+|+||+++.++.++++|||++........  ....+...+.+++.
T Consensus        97 ~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  173 (298)
T cd07841          97 IVLTPADIKSYMLMTLRGLEYLHSNW---ILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPEL  173 (298)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCChhhEEEcCCCCEEEccceeeeeccCCCccccccccceeeeCHHH
Confidence            36999999999999999999999999   99999999999999999999999999876544321  11122333444443


Q ss_pred             C--CCCCCcccchhhHhHHHHHHhccChHH--------------------------------------------------
Q 044320           85 H--TQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------------------------------  112 (176)
Q Consensus        85 ~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------------------------------  112 (176)
                      .  ...++.++|+||||+++|++.++..+|                                                  
T Consensus       174 ~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (298)
T cd07841         174 LFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPA  253 (298)
T ss_pred             HhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhccc
Confidence            2  345788999999999999998875432                                                  


Q ss_pred             -HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 -LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 -~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                       ...+.+++.+||..+|++||++.++++.
T Consensus       254 ~~~~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         254 ASDDALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             ccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence             2346678999999999999999999873

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.91  E-value=2.6e-24  Score=156.79  Aligned_cols=135  Identities=19%  Similarity=0.186  Sum_probs=111.0

Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCCeEEeecCCcccCCCCCCCCc-cccce
Q 044320            3 SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS---KFTPKVFDFEISRLAPVPNINGV-VGHVS   78 (176)
Q Consensus         3 ~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~---~~~~~l~dfg~~~~~~~~~~~~~-~~~~~   78 (176)
                      ++....|++.++-.|+.||+.|+.|||+.+   |.||||||+|+|...   +..+|++|||+++.-..+....+ .-+++
T Consensus       152 ~~g~~afTErea~eI~~qI~~Av~~lH~~n---IAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~TPc~TPy  228 (400)
T KOG0604|consen  152 DRGDQAFTEREASEIMKQIGLAVRYLHSMN---IAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMTPCFTPY  228 (400)
T ss_pred             HcccccchHHHHHHHHHHHHHHHHHHHhcc---hhhccCChhheeeecCCCCcceEecccccccccCCCccccCCccccc
Confidence            455667999999999999999999999999   999999999999854   45799999999988664433222 23345


Q ss_pred             eeecCCC-CCCCCcccchhhHhHHHHHHhccChHHHH-------------------------------HHHHHHHhhccc
Q 044320           79 IVVKGTH-TQQLTEKSDIYGLGIACLYMGLYSFEYLK-------------------------------RFMSLALKYCED  126 (176)
Q Consensus        79 ~~~~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~-------------------------------~l~~l~~~~~~~  126 (176)
                      |.+++.. ..+|..+.|+||+||++|-|+.|.+||..                               ...++|.+++..
T Consensus       229 YvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt  308 (400)
T KOG0604|consen  229 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKT  308 (400)
T ss_pred             ccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcC
Confidence            5555544 67899999999999999999888887742                               478899999999


Q ss_pred             CCCCCCCHHHHHHH
Q 044320          127 ETKARPSMLEVARQ  140 (176)
Q Consensus       127 ~p~~Rp~~~~i~~~  140 (176)
                      +|.+|.|+++++..
T Consensus       309 ~PteRlTI~~~m~h  322 (400)
T KOG0604|consen  309 EPTERLTIEEVMDH  322 (400)
T ss_pred             CchhheeHHHhhcC
Confidence            99999999988764

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.91  E-value=3.7e-24  Score=163.83  Aligned_cols=136  Identities=20%  Similarity=0.230  Sum_probs=107.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----CCccccceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----NGVVGHVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~~   81 (176)
                      ..+++..+..++.|++.||+|||+.+   ++||||||+||+++.++.++++|||++........     ....+...+.+
T Consensus       101 ~~l~~~~~~~i~~ql~~aL~~LH~~~---ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  177 (336)
T cd07849         101 QHLSNDHIQYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRA  177 (336)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccC
Confidence            46899999999999999999999999   99999999999999999999999999876433221     11123334444


Q ss_pred             cCC-C-CCCCCcccchhhHhHHHHHHhccChHHH----------------------------------------------
Q 044320           82 KGT-H-TQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------------------------  113 (176)
Q Consensus        82 ~~~-~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------------------------  113 (176)
                      |+. . ...++.++|+||+|+++|++.++..+|.                                              
T Consensus       178 PE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (336)
T cd07849         178 PEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPW  257 (336)
T ss_pred             hHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccH
Confidence            443 2 3467889999999999999988765441                                              


Q ss_pred             --------HHHHHHHHhhcccCCCCCCCHHHHHHH--HHhhh
Q 044320          114 --------KRFMSLALKYCEDETKARPSMLEVARQ--LENIS  145 (176)
Q Consensus       114 --------~~l~~l~~~~~~~~p~~Rp~~~~i~~~--l~~~~  145 (176)
                              ..+.+++.+||..+|++||++.++++.  +....
T Consensus       258 ~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~  299 (336)
T cd07849         258 NKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYH  299 (336)
T ss_pred             HHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccC
Confidence                    236689999999999999999999886  55443

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.91  E-value=5.2e-24  Score=156.61  Aligned_cols=132  Identities=26%  Similarity=0.336  Sum_probs=106.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~   82 (176)
                      .+..+++.+++.++.|++.|+.|||..+   ++|+|++|+||+++.++.++++|||++........  ....+...+.++
T Consensus        92 ~~~~l~~~~~~~~~~~l~~~l~~lh~~~---i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~P  168 (256)
T cd06612          92 TNKTLTEEEIAAILYQTLKGLEYLHSNK---KIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAP  168 (256)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEECCCCcEEEcccccchhcccCccccccccCCccccCH
Confidence            3567899999999999999999999999   99999999999999999999999999876543321  112223333333


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      + ..+..++.++|+||||+++|++.++..|+                          ...+.+++.+||+.+|.+||++.
T Consensus       169 E~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~  248 (256)
T cd06612         169 EVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAI  248 (256)
T ss_pred             HHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhccCCCCCCCchhhcCHHHHHHHHHHHhcChhhCcCHH
Confidence            3 34567888999999999999998877654                          13578899999999999999999


Q ss_pred             HHHH
Q 044320          136 EVAR  139 (176)
Q Consensus       136 ~i~~  139 (176)
                      ++++
T Consensus       249 ~il~  252 (256)
T cd06612         249 QLLQ  252 (256)
T ss_pred             HHhc
Confidence            8875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.91  E-value=4.8e-24  Score=164.27  Aligned_cols=130  Identities=21%  Similarity=0.180  Sum_probs=104.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-CccccceeeecC-CC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-GVVGHVSIVVKG-TH   85 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~~~-~~   85 (176)
                      .++..++..++.|++.||+|||+.+   ++|+||||+||+++.++.++++|||+++........ ...+...+.+|+ ..
T Consensus       114 ~l~~~~~~~~~~ql~~aL~~LH~~g---i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~  190 (353)
T cd07850         114 DLDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVIL  190 (353)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEccCccceeCCCCCCCCCCcccccccCHHHHh
Confidence            3889999999999999999999999   999999999999999999999999998765433221 112333343333 34


Q ss_pred             CCCCCcccchhhHhHHHHHHhccChHH-----------------------------------------------------
Q 044320           86 TQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------------------------------------  112 (176)
Q Consensus        86 ~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------------------------------------  112 (176)
                      ...++.++|+||+|+++|+|.++..+|                                                     
T Consensus       191 ~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (353)
T cd07850         191 GMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDV  270 (353)
T ss_pred             CCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCccc
Confidence            677889999999999999998775432                                                     


Q ss_pred             -------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 -------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 -------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                   +..+.+++.+||..+|++||++.++++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~  311 (353)
T cd07850         271 LFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQH  311 (353)
T ss_pred             ccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                         1235789999999999999999999854

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.91  E-value=6.8e-24  Score=157.38  Aligned_cols=131  Identities=20%  Similarity=0.252  Sum_probs=98.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeeecC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVVKG   83 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~~~   83 (176)
                      .+++..++.++.|++.||+|+|+.+   ++||||||.||+++.++.++++|||++........    ....+...+.+|+
T Consensus        96 ~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  172 (269)
T cd05042          96 MAQKDVLQRMACEVASGLLWLHQAD---FIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPE  172 (269)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhcC---EecccccHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHH
Confidence            3567888999999999999999999   99999999999999999999999999865432211    1111112233333


Q ss_pred             C--------CCCCCCcccchhhHhHHHHHHhc-cChHHH-----------------------------HHHHHHHHhhcc
Q 044320           84 T--------HTQQLTEKSDIYGLGIACLYMGL-YSFEYL-----------------------------KRFMSLALKYCE  125 (176)
Q Consensus        84 ~--------~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~-----------------------------~~l~~l~~~~~~  125 (176)
                      .        ....++.++|+||+|+++|++.+ +..||.                             ..+.+++..|| 
T Consensus       173 ~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  251 (269)
T cd05042         173 LVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-  251 (269)
T ss_pred             HHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHHHHh-
Confidence            2        13456889999999999999977 444431                             22456778887 


Q ss_pred             cCCCCCCCHHHHHHHHH
Q 044320          126 DETKARPSMLEVARQLE  142 (176)
Q Consensus       126 ~~p~~Rp~~~~i~~~l~  142 (176)
                      .+|++||++.++++.|.
T Consensus       252 ~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         252 LDPETRPTAEEVHELLT  268 (269)
T ss_pred             cCcccccCHHHHHHHhc
Confidence            59999999999998873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.91  E-value=5.5e-24  Score=170.80  Aligned_cols=128  Identities=23%  Similarity=0.186  Sum_probs=99.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeecC-C
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVKG-T   84 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~~-~   84 (176)
                      ....++..++.|++.||.|||+++   |+||||||+||+++.++.++|+|||+++.......   ....|...+.+|+ .
T Consensus       264 ~~~~~~~~i~~ql~~aL~yLH~~g---IiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~  340 (501)
T PHA03210        264 PLLKQTRAIMKQLLCAVEYIHDKK---LIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEIL  340 (501)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhh
Confidence            346678899999999999999999   99999999999999999999999999976543321   1223444444444 3


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH----------------------------------------------------
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------------------------  112 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------------------------  112 (176)
                      ....++.++|||||||++|||+++..++                                                    
T Consensus       341 ~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~  420 (501)
T PHA03210        341 AGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPL  420 (501)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhH
Confidence            4677899999999999999997643210                                                    


Q ss_pred             ------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                            +..+.+++.+|+..||.+||++.++++
T Consensus       421 ~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~  453 (501)
T PHA03210        421 IRNLGLPADFEYPLVKMLTFDWHLRPGAAELLA  453 (501)
T ss_pred             HHhcCCChHHHHHHHHHhccCcccCcCHHHHhh
Confidence                  012344577899999999999999976

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.91  E-value=6e-24  Score=161.01  Aligned_cols=132  Identities=18%  Similarity=0.227  Sum_probs=102.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---------CCcccc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---------NGVVGH   76 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---------~~~~~~   76 (176)
                      ...+++..+..++.|++.||+|||+++   ++|+||+|+||+++.++.++++|||.+........         ....+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~L~~LH~~~---ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
T cd08216          95 PEGLPELAIAFILKDVLNALDYIHSKG---FIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKN  171 (314)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCcceEEEecCCceEEecCccceeecccccccccccccccccccc
Confidence            346889999999999999999999999   99999999999999999999999998754322111         111222


Q ss_pred             ceeeecCCC---CCCCCcccchhhHhHHHHHHhccChHHH----------------------------------------
Q 044320           77 VSIVVKGTH---TQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------------------  113 (176)
Q Consensus        77 ~~~~~~~~~---~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------------------  113 (176)
                      ..+.+|+..   ...++.++|+||||+++|++.++..||.                                        
T Consensus       172 ~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (314)
T cd08216         172 LPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNE  251 (314)
T ss_pred             ccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCccccccc
Confidence            233344432   2457889999999999999987766542                                        


Q ss_pred             -----------------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 -----------------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 -----------------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                       ..+.+++.+||..+|++||++.++++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  295 (314)
T cd08216         252 HPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNH  295 (314)
T ss_pred             ccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcC
Confidence                             246679999999999999999988764

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.91  E-value=3.8e-24  Score=160.17  Aligned_cols=132  Identities=23%  Similarity=0.302  Sum_probs=104.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcC-CCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTE-ADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~-~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~   83 (176)
                      ...+++..+..++.|++.||+|+|+. +   ++||||+|+||+++.++.++++|||++........ ....+...+.+|+
T Consensus       101 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE  177 (288)
T cd06616         101 KSVIPEEILGKIAVATVKALNYLKEELK---IIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPE  177 (288)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhhcCC---eeccCCCHHHEEEccCCcEEEeecchhHHhccCCccccccCccCccCHH
Confidence            46799999999999999999999974 7   99999999999999999999999999865433221 1122333344444


Q ss_pred             CC-C---CCCCcccchhhHhHHHHHHhccChHHH-----------------------------HHHHHHHHhhcccCCCC
Q 044320           84 TH-T---QQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------------KRFMSLALKYCEDETKA  130 (176)
Q Consensus        84 ~~-~---~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------------~~l~~l~~~~~~~~p~~  130 (176)
                      .. .   ..++.++|+||+|+++|++.++..||.                             ..+.+++.+||..+|.+
T Consensus       178 ~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  257 (288)
T cd06616         178 RIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESK  257 (288)
T ss_pred             HhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHccCChhh
Confidence            32 2   368889999999999999988877652                             23678999999999999


Q ss_pred             CCCHHHHHHH
Q 044320          131 RPSMLEVARQ  140 (176)
Q Consensus       131 Rp~~~~i~~~  140 (176)
                      ||++.++++.
T Consensus       258 Rpt~~~i~~~  267 (288)
T cd06616         258 RPKYKELLEH  267 (288)
T ss_pred             CcCHHHHhcC
Confidence            9999988764

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.91  E-value=8.9e-24  Score=155.75  Aligned_cols=132  Identities=20%  Similarity=0.259  Sum_probs=107.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHh-----cCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccce
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLH-----TEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVS   78 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh-----~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~   78 (176)
                      ...+++.+++.++.|++.||.|+|     +.+   ++|+||+|+||+++.++.++++|||++........  ....+...
T Consensus        99 ~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~---i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~  175 (265)
T cd08217          99 RKYIEEEFIWRILTQLLLALYECHNRSDPGNT---VLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPY  175 (265)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHhcCccccCc---ceecCCCHHHEEEecCCCEEEecccccccccCCcccccccccCCC
Confidence            467999999999999999999999     777   99999999999999999999999999887654332  12223333


Q ss_pred             eeecC-CCCCCCCcccchhhHhHHHHHHhccChHHH------------------------HHHHHHHHhhcccCCCCCCC
Q 044320           79 IVVKG-THTQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------KRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        79 ~~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      +.+++ .....++.++|+||||++++++.++..||.                        ..+.+++.+|+..+|.+||+
T Consensus       176 ~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~  255 (265)
T cd08217         176 YMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKIKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPS  255 (265)
T ss_pred             ccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCC
Confidence            44333 345667889999999999999988766542                        45789999999999999999


Q ss_pred             HHHHHHH
Q 044320          134 MLEVARQ  140 (176)
Q Consensus       134 ~~~i~~~  140 (176)
                      +.++++.
T Consensus       256 ~~~il~~  262 (265)
T cd08217         256 TEELLQL  262 (265)
T ss_pred             HHHHhhC
Confidence            9998863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.91  E-value=5.2e-24  Score=162.49  Aligned_cols=131  Identities=18%  Similarity=0.172  Sum_probs=101.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC---------CCCcccc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN---------INGVVGH   76 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---------~~~~~~~   76 (176)
                      ...+++.+++.++.|++.||.|||+.+   ++||||||+||+++.++.++++||+.........         .....+.
T Consensus        95 ~~~l~~~~~~~i~~qi~~~L~~LH~~~---iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (327)
T cd08227          95 MDGMSELAIAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKV  171 (327)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCChhhEEEecCCcEEEcccchhhccccccccccccccccccccce
Confidence            345899999999999999999999999   9999999999999999999999997543321110         0111122


Q ss_pred             ceeeecCCC-C--CCCCcccchhhHhHHHHHHhccChHHH----------------------------------------
Q 044320           77 VSIVVKGTH-T--QQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------------------  113 (176)
Q Consensus        77 ~~~~~~~~~-~--~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------------------  113 (176)
                      ..+.+|+.. .  ..++.++|||||||++|++.++..||.                                        
T Consensus       172 ~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (327)
T cd08227         172 LPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGAN  251 (327)
T ss_pred             ecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCCc
Confidence            223334333 2  457899999999999999988776652                                        


Q ss_pred             -----------------------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 -----------------------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 -----------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                                   ..+.+++.+||+.+|++|||++++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~  306 (327)
T cd08227         252 SGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLN  306 (327)
T ss_pred             CCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhc
Confidence                                         24668999999999999999999986

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.91  E-value=7.5e-24  Score=159.01  Aligned_cols=131  Identities=18%  Similarity=0.176  Sum_probs=103.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-CCCeEEeecCCcccCCCCCC--CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-KFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~   82 (176)
                      ...+++..++.++.|++.||.|||+.+   ++|+||+|+||+++. ++.++++|||.+........  ....+...+.+|
T Consensus       104 ~~~~~~~~~~~~~~qi~~~L~~LH~~~---i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aP  180 (295)
T cd07837         104 GRPLPAKTIKSFMYQLLKGVAHCHKHG---VMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAP  180 (295)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChHHEEEecCCCeEEEeecccceecCCCccccCCcccccCCCCh
Confidence            356899999999999999999999999   999999999999998 88999999999875433221  111222333344


Q ss_pred             CC-C-CCCCCcccchhhHhHHHHHHhccChHH------------------------------------------------
Q 044320           83 GT-H-TQQLTEKSDIYGLGIACLYMGLYSFEY------------------------------------------------  112 (176)
Q Consensus        83 ~~-~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------------------------  112 (176)
                      +. . ...++.++|+||||+++|+|.++..+|                                                
T Consensus       181 E~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (295)
T cd07837         181 EVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAV  260 (295)
T ss_pred             HHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhc
Confidence            42 2 345688999999999999998876543                                                


Q ss_pred             ---HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ---LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ---~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                         ...+.+++.+||..+|.+||++.+++.
T Consensus       261 ~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         261 PDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             cccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence               234678999999999999999998875

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.90  E-value=1.1e-23  Score=158.22  Aligned_cols=131  Identities=24%  Similarity=0.272  Sum_probs=104.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.|+.|||+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+|+
T Consensus       104 ~~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  180 (292)
T cd06644         104 DRGLTEPQIQVICRQMLEALQYLHSMK---IIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPE  180 (292)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhcCC---eeecCCCcceEEEcCCCCEEEccCccceeccccccccceecCCccccCce
Confidence            456899999999999999999999999   99999999999999999999999998765322211  1112233343443


Q ss_pred             CC------CCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCC
Q 044320           84 TH------TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~~------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                      ..      ...++.++|+||||+++|++.++..+|.                          ..+.+++.+||..+|++|
T Consensus       181 ~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  260 (292)
T cd06644         181 VVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETR  260 (292)
T ss_pred             eeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHHHHHHHhcCCCccCCCCcccCHHHHHHHHHHhcCCcccC
Confidence            22      3446789999999999999988777652                          247789999999999999


Q ss_pred             CCHHHHHH
Q 044320          132 PSMLEVAR  139 (176)
Q Consensus       132 p~~~~i~~  139 (176)
                      |++.++++
T Consensus       261 p~~~~il~  268 (292)
T cd06644         261 PSAAQLLE  268 (292)
T ss_pred             cCHHHHhc
Confidence            99998875

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.90  E-value=7.1e-24  Score=158.18  Aligned_cols=130  Identities=21%  Similarity=0.175  Sum_probs=104.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC---CCCccccceeeecC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN---INGVVGHVSIVVKG   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~~   83 (176)
                      ..+++.+++.++.|++.||+|||..+   ++|+||+|+||+++.++.++++|||.+.......   .....+...+.+|+
T Consensus        95 ~~~~~~~~~~i~~~i~~al~~LH~~~---~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE  171 (287)
T cd07840          95 VKFTESQIKCYMKQLLEGLQYLHSNG---ILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPE  171 (287)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCcHHHeEEcCCCCEEEccccceeeccCCCcccccccccccccCCce
Confidence            57999999999999999999999999   9999999999999999999999999987655432   11222233344444


Q ss_pred             C-C-CCCCCcccchhhHhHHHHHHhccChHH-------------------------------------------------
Q 044320           84 T-H-TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------------  112 (176)
Q Consensus        84 ~-~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------------  112 (176)
                      . . ...++.++|+||||+++|++.++..+|                                                 
T Consensus       172 ~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (287)
T cd07840         172 LLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREF  251 (287)
T ss_pred             eeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHH
Confidence            3 2 345788999999999999998876553                                                 


Q ss_pred             -----HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 -----LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 -----~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                           +..+.+++.+||..+|.+||++.++++
T Consensus       252 ~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         252 FKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             hcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence                 334668899999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.90  E-value=4.9e-24  Score=159.16  Aligned_cols=131  Identities=23%  Similarity=0.278  Sum_probs=105.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++..+..++.|++.||.|||+.+   ++|+|++|+||+++.++.++++|||++.......  .....+...+.+|+
T Consensus       115 ~~~~~~~~~~~~~~qi~~al~~LH~~~---ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  191 (282)
T cd06636         115 GNALKEDWIAYICREILRGLAHLHAHK---VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPE  191 (282)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEeeCcchhhhhccccCCCcccccccccCHh
Confidence            345888899999999999999999999   9999999999999999999999999886543221  11222333344443


Q ss_pred             CC------CCCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCC
Q 044320           84 TH------TQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARP  132 (176)
Q Consensus        84 ~~------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp  132 (176)
                      ..      ...++.++|+||||+++|++.++..||.                         ..+.+++.+||..+|.+||
T Consensus       192 ~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp  271 (282)
T cd06636         192 VIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKSKKWSKKFIDFIEGCLVKNYLSRP  271 (282)
T ss_pred             hcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhhhHhhCCCCCCcccccCHHHHHHHHHHhCCChhhCc
Confidence            32      3457789999999999999988887652                         2578999999999999999


Q ss_pred             CHHHHHH
Q 044320          133 SMLEVAR  139 (176)
Q Consensus       133 ~~~~i~~  139 (176)
                      ++.++++
T Consensus       272 ~~~ell~  278 (282)
T cd06636         272 STEQLLK  278 (282)
T ss_pred             CHHHHhc
Confidence            9998864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.90  E-value=8.8e-24  Score=157.96  Aligned_cols=131  Identities=17%  Similarity=0.131  Sum_probs=105.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~   82 (176)
                      ...+++.++..++.|++.|+.|||..+   ++|+|++|+||+++.++.++++|||.+........   ....+..++.++
T Consensus        94 ~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~P  170 (288)
T cd07833          94 PGGLPPDAVRSYIWQLLQAIAYCHSHN---IIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAP  170 (288)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEEeeecccccCCCccccccCcccccCCcCC
Confidence            456899999999999999999999999   99999999999999999999999999876543321   112223334444


Q ss_pred             CC-CCC-CCCcccchhhHhHHHHHHhccChHH------------------------------------------------
Q 044320           83 GT-HTQ-QLTEKSDIYGLGIACLYMGLYSFEY------------------------------------------------  112 (176)
Q Consensus        83 ~~-~~~-~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------------------------  112 (176)
                      +. ... .++.++|+||+|+++|++.++..+|                                                
T Consensus       171 E~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (288)
T cd07833         171 ELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLE  250 (288)
T ss_pred             chhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHH
Confidence            43 344 6788999999999999998765432                                                


Q ss_pred             -------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 -------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 -------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                             +.++.+++.+||..+|.+||+++++++
T Consensus       251 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         251 RRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             HhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence                   345788999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.90  E-value=4.3e-24  Score=165.66  Aligned_cols=131  Identities=17%  Similarity=0.180  Sum_probs=106.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC---CCCccccceeeecC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN---INGVVGHVSIVVKG   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~~   83 (176)
                      ..+++..+..++.|++.||+|||+.+   ++||||||+||+++.++.++|+|||++.......   .....|...+.+|+
T Consensus       137 ~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE  213 (370)
T cd05596         137 YDIPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPE  213 (370)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHH
Confidence            35889999999999999999999999   9999999999999999999999999987654322   12234555566555


Q ss_pred             CC-----CCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCC-
Q 044320           84 TH-----TQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKA-  130 (176)
Q Consensus        84 ~~-----~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~-  130 (176)
                      ..     ...++.++|+|||||++|+|.++..||.                           ..+.+++.+|+..+|.+ 
T Consensus       214 ~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~  293 (370)
T cd05596         214 VLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRL  293 (370)
T ss_pred             HhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhcc
Confidence            43     2347889999999999999988877752                           24678999999988887 


Q ss_pred             -CCCHHHHHHH
Q 044320          131 -RPSMLEVARQ  140 (176)
Q Consensus       131 -Rp~~~~i~~~  140 (176)
                       |+++.++++.
T Consensus       294 ~R~s~~ell~h  304 (370)
T cd05596         294 GRNGVDEIKSH  304 (370)
T ss_pred             CCCCHHHHhcC
Confidence             9999998654

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.90  E-value=6.9e-24  Score=162.24  Aligned_cols=132  Identities=15%  Similarity=0.176  Sum_probs=105.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC------Ccccccee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN------GVVGHVSI   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~------~~~~~~~~   79 (176)
                      +..+++.++..++.|++.||.|||..+   ++|+||+|+||+++.++.++++|||++.........      ...+..++
T Consensus       101 ~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y  177 (334)
T cd07855         101 DQPLTEEHIRYFLYQLLRGLKYIHSAN---VIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWY  177 (334)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEecccccceeecccCcCCCcccccccccccc
Confidence            455999999999999999999999999   999999999999999999999999998764332211      11233344


Q ss_pred             eecCCC--CCCCCcccchhhHhHHHHHHhccChHH---------------------------------------------
Q 044320           80 VVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------------  112 (176)
Q Consensus        80 ~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------------  112 (176)
                      .+|+..  ...++.++|+||+|+++|++.++..+|                                             
T Consensus       178 ~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (334)
T cd07855         178 RAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPV  257 (334)
T ss_pred             cChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCC
Confidence            444432  245788999999999999998776554                                             


Q ss_pred             ---------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 ---------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 ---------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                               +..+.+++.+||+.+|.+||++.+++..
T Consensus       258 ~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  294 (334)
T cd07855         258 PWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQH  294 (334)
T ss_pred             CHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence                     2346789999999999999999988763

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=1e-23  Score=155.57  Aligned_cols=131  Identities=23%  Similarity=0.291  Sum_probs=105.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      +..+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||.+.......  .....+...+.+|+
T Consensus        95 ~~~l~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe  171 (262)
T cd06613          95 RGPLSELQIAYVCRETLKGLAYLHETG---KIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPE  171 (262)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC---ceecCCChhhEEECCCCCEEECccccchhhhhhhhccccccCCccccCch
Confidence            367999999999999999999999999   9999999999999999999999999886544321  11222333344444


Q ss_pred             CC-CC---CCCcccchhhHhHHHHHHhccChHH----------------------------HHHHHHHHHhhcccCCCCC
Q 044320           84 TH-TQ---QLTEKSDIYGLGIACLYMGLYSFEY----------------------------LKRFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~~-~~---~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------~~~l~~l~~~~~~~~p~~R  131 (176)
                      .. ..   .++.++|+||+|+++|+|.++..|+                            +..+.+++.+||..+|..|
T Consensus       172 ~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  251 (262)
T cd06613         172 VAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKR  251 (262)
T ss_pred             hhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChhhC
Confidence            33 33   6788999999999999997776553                            2347899999999999999


Q ss_pred             CCHHHHHH
Q 044320          132 PSMLEVAR  139 (176)
Q Consensus       132 p~~~~i~~  139 (176)
                      |++.+++.
T Consensus       252 pt~~~il~  259 (262)
T cd06613         252 PTATKLLQ  259 (262)
T ss_pred             CCHHHHhc
Confidence            99998874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.90  E-value=8.1e-24  Score=161.37  Aligned_cols=139  Identities=19%  Similarity=0.198  Sum_probs=111.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-----CCCccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-----INGVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-----~~~~~~~~~~~   80 (176)
                      +..+++..++.++.|++.||+|||+.+   ++|+||||.||+++.++.++++|||.+.......     .....+..++.
T Consensus        97 ~~~l~~~~~~~i~~~l~~~l~~LH~~g---i~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~  173 (330)
T cd07834          97 PQPLTDDHIQYFLYQILRGLKYLHSAN---VIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYR  173 (330)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcC
Confidence            347999999999999999999999999   9999999999999999999999999987755432     11222333444


Q ss_pred             ecCC-CCC-CCCcccchhhHhHHHHHHhccChHH----------------------------------------------
Q 044320           81 VKGT-HTQ-QLTEKSDIYGLGIACLYMGLYSFEY----------------------------------------------  112 (176)
Q Consensus        81 ~~~~-~~~-~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------------------  112 (176)
                      +|+. ... .++.++|+||+|+++|++.++..+|                                              
T Consensus       174 aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (330)
T cd07834         174 APELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKP  253 (330)
T ss_pred             CceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcch
Confidence            4443 334 6788999999999999998876654                                              


Q ss_pred             --------HHHHHHHHHhhcccCCCCCCCHHHHHHH--HHhhhhc
Q 044320          113 --------LKRFMSLALKYCEDETKARPSMLEVARQ--LENISSM  147 (176)
Q Consensus       113 --------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~--l~~~~~~  147 (176)
                              +..+.+++.+||..+|.+||++.+++..  +++....
T Consensus       254 ~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~  298 (330)
T cd07834         254 LSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDP  298 (330)
T ss_pred             hHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhccc
Confidence                    2346789999999999999999999874  6655553

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.90  E-value=2.9e-24  Score=171.05  Aligned_cols=134  Identities=18%  Similarity=0.211  Sum_probs=113.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC------ccccce
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING------VVGHVS   78 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~------~~~~~~   78 (176)
                      .+..|-....-+|+.|||.|+.||.+++   +|||||..+|+++-....+||+|||+.+-.+.+...+      ...+.|
T Consensus       205 ~~~~llv~~Lcdya~QiA~aM~YLeskr---lvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAW  281 (1039)
T KOG0199|consen  205 KKAILLVSRLCDYAMQIAKAMQYLESKR---LVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAW  281 (1039)
T ss_pred             cccceeHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhhhheecccceeeeecccceeccCCCCcceEecCCCcCcccc
Confidence            3445777888999999999999999999   9999999999999999999999999998877655332      234456


Q ss_pred             eeecCCCCCCCCcccchhhHhHHHHHHhc-------------------------cChHHHHHHHHHHHhhcccCCCCCCC
Q 044320           79 IVVKGTHTQQLTEKSDIYGLGIACLYMGL-------------------------YSFEYLKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        79 ~~~~~~~~~~~~~~~Dv~s~G~~l~~l~~-------------------------~~~~~~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      .+++.+....|+-++|||+|||.+|||.+                         .+..+++.+++++++||..+|++||+
T Consensus       282 CaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD~~erLpRPk~csedIY~imk~cWah~paDRpt  361 (1039)
T KOG0199|consen  282 CAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDAGERLPRPKYCSEDIYQIMKNCWAHNPADRPT  361 (1039)
T ss_pred             cCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhccccccCCCCCCChHHHHHHHHHhccCCcccccc
Confidence            66777778999999999999999999944                         33345678999999999999999999


Q ss_pred             HHHHHHHH
Q 044320          134 MLEVARQL  141 (176)
Q Consensus       134 ~~~i~~~l  141 (176)
                      |.+|.+.+
T Consensus       362 Fsair~~~  369 (1039)
T KOG0199|consen  362 FSAIREDL  369 (1039)
T ss_pred             HHHHHHhH
Confidence            99997544

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.90  E-value=4e-24  Score=160.23  Aligned_cols=131  Identities=22%  Similarity=0.222  Sum_probs=106.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKG-   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~-   83 (176)
                      ...+++.++..++.|++.||.|+|+.+   ++|+||||+||+++.++.++++|||++........ ....+...+.+++ 
T Consensus        96 ~~~l~~~~~~~~~~qi~~~l~~lH~~~---iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~  172 (285)
T cd05630          96 EAGFEEGRAVFYAAEICCGLEDLHQER---IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEV  172 (285)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHEEECCCCCEEEeeccceeecCCCccccCCCCCccccChHH
Confidence            346899999999999999999999999   99999999999999999999999999865433221 1223344444444 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCCC---
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARPS---  133 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp~---  133 (176)
                      .....++.++|+||+|+++|++.++..||.                           ..+.+++.+||+.+|++||+   
T Consensus       173 ~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~  252 (285)
T cd05630         173 VKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVQEEYSEKFSPDARSLCKMLLCKDPKERLGCQG  252 (285)
T ss_pred             HcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhhhhhhcCccCCHHHHHHHHHHhhcCHHHccCCCC
Confidence            346678899999999999999988877653                           13688999999999999999   


Q ss_pred             --HHHHHH
Q 044320          134 --MLEVAR  139 (176)
Q Consensus       134 --~~~i~~  139 (176)
                        +.++++
T Consensus       253 ~~~~~~~~  260 (285)
T cd05630         253 GGAREVKE  260 (285)
T ss_pred             CchHHHHc
Confidence              777776

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.90  E-value=7.1e-24  Score=156.94  Aligned_cols=130  Identities=25%  Similarity=0.347  Sum_probs=104.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--------Cccccce
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--------GVVGHVS   78 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--------~~~~~~~   78 (176)
                      ..+++..+..++.|++.||+|+|+.+   ++|+||+|+||+++.++.++++|||.++........        ...+...
T Consensus       101 ~~l~~~~~~~~~~~l~~~l~~lH~~~---ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (267)
T cd06628         101 GAFEETLVRNFVRQILKGLNYLHNRG---IIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVF  177 (267)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHhcC---cccccCCHHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcC
Confidence            56889999999999999999999999   999999999999999999999999998765422110        1112233


Q ss_pred             eeecC-CCCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCC
Q 044320           79 IVVKG-THTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        79 ~~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      +.+++ .....++.++|+||+|+++|++.++..||                        +..+.+++.+||+.+|.+||+
T Consensus       178 y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~  257 (267)
T cd06628         178 WMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIGENASPEIPSNISSEAIDFLEKTFEIDHNKRPT  257 (267)
T ss_pred             ccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHHHHHHhccCCCcCCcccCHHHHHHHHHHccCCchhCcC
Confidence            33333 34566788999999999999998876654                        234788999999999999999


Q ss_pred             HHHHHH
Q 044320          134 MLEVAR  139 (176)
Q Consensus       134 ~~~i~~  139 (176)
                      +.++++
T Consensus       258 ~~~il~  263 (267)
T cd06628         258 AAELLK  263 (267)
T ss_pred             HHHHhh
Confidence            998875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.90  E-value=7.7e-24  Score=158.22  Aligned_cols=130  Identities=20%  Similarity=0.213  Sum_probs=103.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~~   84 (176)
                      ..+++.+++.++.|++.||.|||+.+   ++|+|++|+||+++.++.++++|||++........  ....+...+.+|+.
T Consensus        95 ~~~~~~~~~~~~~~i~~~l~~LH~~~---i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  171 (286)
T cd07846          95 NGLDESRVRKYLFQILRGIEFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPEL  171 (286)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccccCcccceeeccCcHH
Confidence            45899999999999999999999999   99999999999999999999999998876433221  11223333444443


Q ss_pred             C--CCCCCcccchhhHhHHHHHHhccChHH--------------------------------------------------
Q 044320           85 H--TQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------------------------------  112 (176)
Q Consensus        85 ~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------------------------------  112 (176)
                      .  ...++.++|+||||+++|++.++..+|                                                  
T Consensus       172 ~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (286)
T cd07846         172 LVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKR  251 (286)
T ss_pred             hccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHh
Confidence            2  244678899999999999998875443                                                  


Q ss_pred             ----HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ----LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ----~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                          +..+.+++.+||..+|.+||++.++++
T Consensus       252 ~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         252 FPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             CCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence                234778999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.90  E-value=1.5e-23  Score=156.56  Aligned_cols=130  Identities=18%  Similarity=0.190  Sum_probs=103.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCcccccee-eecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSI-VVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~-~~~~~   84 (176)
                      ..+++..++.++.|++.||.|||+.+   ++|+|++|+||+++.++.++++|||.+........ ....+...+ +++..
T Consensus       102 ~~l~~~~~~~~~~~i~~al~~LH~~~---i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~PE~~  178 (287)
T cd07838         102 PGLPPETIKDLMRQLLRGVDFLHSHR---IVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMALTSVVVTLWYRAPEVL  178 (287)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCChhhEEEccCCCEEEeccCcceeccCCcccccccccccccChHHh
Confidence            46899999999999999999999999   99999999999999999999999999876543322 112222223 33334


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH--------------------------------------------------HH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------------------------------LK  114 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------------------------------~~  114 (176)
                      ....++.++|+||||+++|+|.++..+|                                                  ..
T Consensus       179 ~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (287)
T cd07838         179 LQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICE  258 (287)
T ss_pred             ccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhH
Confidence            4567788999999999999998765443                                                  13


Q ss_pred             HHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          115 RFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       115 ~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      .+.+++.+||..+|.+||++.+++.
T Consensus       259 ~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         259 EGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             HHHHHHHHHhccCCccCCCHHHHhc
Confidence            4567899999999999999998874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.90  E-value=8.5e-24  Score=159.58  Aligned_cols=130  Identities=19%  Similarity=0.150  Sum_probs=102.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC------CCccccceee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI------NGVVGHVSIV   80 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~------~~~~~~~~~~   80 (176)
                      ..+++.+++.++.|++.||+|||+.+   ++|+||+|+||+++.++.++++|||.+........      ....+...+.
T Consensus       114 ~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~  190 (310)
T cd07865         114 VKFTLSEIKKVMKMLLNGLYYIHRNK---ILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYR  190 (310)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCcccc
Confidence            46899999999999999999999999   99999999999999999999999999876543221      1112233344


Q ss_pred             ecCCC-C-CCCCcccchhhHhHHHHHHhccChHH----------------------------------------------
Q 044320           81 VKGTH-T-QQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------------------  112 (176)
Q Consensus        81 ~~~~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------------------  112 (176)
                      +|+.. + ..++.++|+||||+++|++.++..+|                                              
T Consensus       191 aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (310)
T cd07865         191 PPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKV  270 (310)
T ss_pred             CcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCccchhh
Confidence            44432 2 34678999999999999997764432                                              


Q ss_pred             ---------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ---------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ---------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                               ...+.+++.+||..+|.+||+++++++
T Consensus       271 ~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~  306 (310)
T cd07865         271 KERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALN  306 (310)
T ss_pred             HHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence                     123457999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.90  E-value=9.5e-24  Score=161.69  Aligned_cols=139  Identities=17%  Similarity=0.173  Sum_probs=109.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      +..+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+++
T Consensus       102 ~~~l~~~~~~~i~~qi~~aL~~LH~~~---i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE  178 (337)
T cd07858         102 SQTLSDDHCQYFLYQLLRGLKYIHSAN---VLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPE  178 (337)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEECcCccccccCCCcccccccccccCccChH
Confidence            456999999999999999999999999   99999999999999999999999999876543311  1112333344444


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHH-------------------------------------------------
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------------  112 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------------  112 (176)
                      ..  ...++.++|+||||+++|++.++..+|                                                 
T Consensus       179 ~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (337)
T cd07858         179 LLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFAR  258 (337)
T ss_pred             HHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHH
Confidence            32  245788999999999999998776543                                                 


Q ss_pred             -----HHHHHHHHHhhcccCCCCCCCHHHHHHH--HHhhhhc
Q 044320          113 -----LKRFMSLALKYCEDETKARPSMLEVARQ--LENISSM  147 (176)
Q Consensus       113 -----~~~l~~l~~~~~~~~p~~Rp~~~~i~~~--l~~~~~~  147 (176)
                           ...+.+++.+||..+|++||++.++++.  +..+...
T Consensus       259 ~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~~  300 (337)
T cd07858         259 LFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHDP  300 (337)
T ss_pred             HcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcCc
Confidence                 1235689999999999999999999877  6665444

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=8.8e-24  Score=156.67  Aligned_cols=131  Identities=23%  Similarity=0.278  Sum_probs=105.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      +..+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||.+........  ....+...+.+|+
T Consensus       107 ~~~~~~~~~~~~~~ql~~al~~lH~~~---i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE  183 (275)
T cd06608         107 GKRLKEEWIAYILRETLRGLAYLHENK---VIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPE  183 (275)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHHHEEEccCCeEEECCCccceecccchhhhcCccccccccCHh
Confidence            467999999999999999999999999   99999999999999999999999998865432211  1122333333333


Q ss_pred             CC------CCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCC
Q 044320           84 TH------TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~~------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                      ..      ...++.++|+||+|+++|++.++..||.                          ..+.+++.+||..+|.+|
T Consensus       184 ~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R  263 (275)
T cd06608         184 VIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRALFKIPRNPPPTLKSPENWSKKFNDFISECLIKNYEQR  263 (275)
T ss_pred             HhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHHHHHHhhccCCCCCCchhhcCHHHHHHHHHHhhcChhhC
Confidence            21      3456788999999999999988776652                          357899999999999999


Q ss_pred             CCHHHHHH
Q 044320          132 PSMLEVAR  139 (176)
Q Consensus       132 p~~~~i~~  139 (176)
                      |++.++++
T Consensus       264 pt~~~ll~  271 (275)
T cd06608         264 PFMEELLE  271 (275)
T ss_pred             cCHHHHhc
Confidence            99999875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.90  E-value=8.7e-24  Score=159.91  Aligned_cols=132  Identities=22%  Similarity=0.174  Sum_probs=105.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--CccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||+|||+.+   ++|+||+|+||+++.++.++++|||.+.........  ...+...+.+|+
T Consensus       102 ~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  178 (309)
T cd07845         102 PTPFSESQVKCLMLQLLRGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPE  178 (309)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEECccceeeecCCccCCCCcccccccccChh
Confidence            356899999999999999999999999   999999999999999999999999998765543211  111223344444


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHH-------------------------------------------------
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------------  112 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------------  112 (176)
                      ..  ...++.++|+||+|+++|++.++..+|                                                 
T Consensus       179 ~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (309)
T cd07845         179 LLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHK  258 (309)
T ss_pred             hhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHh
Confidence            33  345788999999999999998876543                                                 


Q ss_pred             ----HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 ----LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 ----~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                          ...+.+++.+|+..||++||++.+++..
T Consensus       259 ~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h  290 (309)
T cd07845         259 FPWLSEAGLRLLNFLLMYDPKKRATAEEALES  290 (309)
T ss_pred             ccccCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence                2345679999999999999999998864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.90  E-value=1.2e-23  Score=157.71  Aligned_cols=132  Identities=24%  Similarity=0.311  Sum_probs=104.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++..++.++.|++.||+|||..+   ++|+||+|+||+++.++.++++|||++.......  .....+...+.+|+
T Consensus       122 ~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  198 (291)
T cd06639         122 GQRLDEAMISYILYGALLGLQHLHNNR---IIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPE  198 (291)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEEcCCCCEEEeecccchhcccccccccCccCCccccChh
Confidence            457899999999999999999999998   9999999999999999999999999887644322  11122333344444


Q ss_pred             CC------CCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCC
Q 044320           84 TH------TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~~------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                      ..      ...++.++|+||+|+++|++.++..||.                          ..+.+++.+||+.+|++|
T Consensus       199 ~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R  278 (291)
T cd06639         199 VIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEAR  278 (291)
T ss_pred             hhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHhhcChhhC
Confidence            32      2236789999999999999988876642                          136789999999999999


Q ss_pred             CCHHHHHHH
Q 044320          132 PSMLEVARQ  140 (176)
Q Consensus       132 p~~~~i~~~  140 (176)
                      |++.++++.
T Consensus       279 ps~~~il~~  287 (291)
T cd06639         279 PSVTHLLEH  287 (291)
T ss_pred             cCHHHHhcC
Confidence            999998763

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.90  E-value=6.8e-24  Score=159.53  Aligned_cols=131  Identities=21%  Similarity=0.234  Sum_probs=105.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~~   84 (176)
                      ..+++.++..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+|+.
T Consensus       113 ~~l~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  189 (292)
T cd06658         113 TRMNEEQIATVCLSVLRALSYLHNQG---VIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEV  189 (292)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCceeecCccccCHHH
Confidence            45899999999999999999999999   99999999999999999999999998865432221  11223333444443


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                       ....++.++|+||||+++|++.++..||.                          ..+.+++.+||..+|.+||++.++
T Consensus       190 ~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~i  269 (292)
T cd06658         190 ISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQEL  269 (292)
T ss_pred             HccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCccccccccCHHHHHHHHHHccCChhHCcCHHHH
Confidence             35667889999999999999988776541                          236788999999999999999999


Q ss_pred             HHH
Q 044320          138 ARQ  140 (176)
Q Consensus       138 ~~~  140 (176)
                      ++.
T Consensus       270 l~~  272 (292)
T cd06658         270 LQH  272 (292)
T ss_pred             hhC
Confidence            874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.90  E-value=9.7e-24  Score=155.35  Aligned_cols=132  Identities=24%  Similarity=0.294  Sum_probs=106.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+++
T Consensus        95 ~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape  171 (256)
T cd08221          95 GQLFEEEMVLWYLFQIVSAVSYIHKAG---ILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPE  171 (256)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCChHhEEEeCCCCEEECcCcceEEcccccccccccCCCccccCHh
Confidence            456899999999999999999999999   99999999999999999999999998876543331  1122333333333


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                       ..+..++.++|+||+|+++|++.++..+|                        +..+.+++.+||..+|.+||++.+++
T Consensus       172 ~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll  251 (256)
T cd08221         172 LCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGNYTPVVSVYSSELISLVHSLLQQDPEKRPTADEVL  251 (256)
T ss_pred             hcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccCHHHHHHHHHHcccCcccCCCHHHHh
Confidence             34556788999999999999997765442                        34578899999999999999999988


Q ss_pred             HH
Q 044320          139 RQ  140 (176)
Q Consensus       139 ~~  140 (176)
                      +.
T Consensus       252 ~~  253 (256)
T cd08221         252 DQ  253 (256)
T ss_pred             hC
Confidence            75

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.90  E-value=8.8e-24  Score=155.33  Aligned_cols=130  Identities=25%  Similarity=0.337  Sum_probs=104.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCc---ccccee-eecCC
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV---VGHVSI-VVKGT   84 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~---~~~~~~-~~~~~   84 (176)
                      +++.++..++.|++.||+|||+.+   ++|+||+|+||+++.++.++++|||++...........   .+...+ +++..
T Consensus       100 ~~~~~~~~~~~ql~~~l~~lh~~~---~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~  176 (258)
T smart00219      100 LSLSDLLSFALQIARGMEYLESKN---FIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESL  176 (258)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCC---eeecccccceEEEccCCeEEEcccCCceecccccccccccCCCcccccChHHh
Confidence            899999999999999999999999   99999999999999999999999999876554322111   112223 33333


Q ss_pred             CCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      ....++.++|+||+|++++++.+ +..+|                        +..+.+++.+|+..+|++||++.++++
T Consensus       177 ~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  256 (258)
T smart00219      177 KDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYLKKGYRLPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVE  256 (258)
T ss_pred             ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHh
Confidence            45667889999999999999976 33332                        245788999999999999999999987


Q ss_pred             HH
Q 044320          140 QL  141 (176)
Q Consensus       140 ~l  141 (176)
                      .|
T Consensus       257 ~l  258 (258)
T smart00219      257 IL  258 (258)
T ss_pred             hC
Confidence            64

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.90  E-value=1.2e-23  Score=158.40  Aligned_cols=130  Identities=23%  Similarity=0.262  Sum_probs=105.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG-   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~-   83 (176)
                      ..+++.++..++.|++.||+|||+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+|+ 
T Consensus       110 ~~l~~~~~~~i~~~l~~al~~LH~~~---i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  186 (296)
T cd06655         110 TCMDEAQIAAVCRECLQALEFLHANQ---VIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV  186 (296)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEccCccchhcccccccCCCcCCCccccCcch
Confidence            35899999999999999999999999   99999999999999999999999998765433221  1122333344443 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      .....++.++|+|||||++|++.++..||.                          ..+.+++.+||..+|.+||++.++
T Consensus       187 ~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~i  266 (296)
T cd06655         187 VTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKEL  266 (296)
T ss_pred             hcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHH
Confidence            446668899999999999999988877642                          247789999999999999999988


Q ss_pred             HH
Q 044320          138 AR  139 (176)
Q Consensus       138 ~~  139 (176)
                      ++
T Consensus       267 l~  268 (296)
T cd06655         267 LQ  268 (296)
T ss_pred             hh
Confidence            74

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.90  E-value=2.1e-23  Score=155.98  Aligned_cols=131  Identities=22%  Similarity=0.336  Sum_probs=104.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      ..+++..+..++.|++.||.|||. .+   ++|+||+|+||+++.++.++++|||.+............+...+.+|+..
T Consensus        97 ~~~~~~~~~~~~~~i~~~l~~LH~~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~  173 (286)
T cd06622          97 EGIPEDVLRRITYAVVKGLKFLKEEHN---IIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTNIGCQSYMAPERI  173 (286)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhcCC---EeeCCCCHHHEEECCCCCEEEeecCCcccccCCccccCCCccCccCcchh
Confidence            478999999999999999999996 57   99999999999999999999999999876543332222333334344332


Q ss_pred             -------CCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCC
Q 044320           86 -------TQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        86 -------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                             ...++.++|+||+||++|++.++..||.                           ..+.+++.+||..+|.+|
T Consensus       174 ~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  253 (286)
T cd06622         174 KSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRR  253 (286)
T ss_pred             cCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHHHHhhcCCCCCCcccCHHHHHHHHHHcccCcccC
Confidence                   2245789999999999999988776541                           346789999999999999


Q ss_pred             CCHHHHHHH
Q 044320          132 PSMLEVARQ  140 (176)
Q Consensus       132 p~~~~i~~~  140 (176)
                      |++.+++..
T Consensus       254 p~~~~l~~~  262 (286)
T cd06622         254 PTYAQLLEH  262 (286)
T ss_pred             CCHHHHhcC
Confidence            999988863

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.90  E-value=1.1e-23  Score=161.67  Aligned_cols=137  Identities=18%  Similarity=0.195  Sum_probs=107.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH-   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~-   85 (176)
                      ..+++..++.++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++........ ...+...+.+++.. 
T Consensus       113 ~~l~~~~~~~i~~qi~~al~~LH~~g---i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~y~aPE~~~  188 (343)
T cd07880         113 EKLSEDRIQFLVYQMLKGLKYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQTDSEMT-GYVVTRWYRAPEVIL  188 (343)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccccccccCcc-ccccCCcccCHHHHh
Confidence            46899999999999999999999999   99999999999999999999999999876543322 11223333344332 


Q ss_pred             C-CCCCcccchhhHhHHHHHHhccChHHH---------------------------------------------------
Q 044320           86 T-QQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------------------------------  113 (176)
Q Consensus        86 ~-~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------------------------------  113 (176)
                      . ..++.++|+||+|+++|++.++..+|.                                                   
T Consensus       189 ~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (343)
T cd07880         189 NWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLP  268 (343)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhcc
Confidence            2 357889999999999999988765431                                                   


Q ss_pred             ---HHHHHHHHhhcccCCCCCCCHHHHH--HHHHhhhhc
Q 044320          114 ---KRFMSLALKYCEDETKARPSMLEVA--RQLENISSM  147 (176)
Q Consensus       114 ---~~l~~l~~~~~~~~p~~Rp~~~~i~--~~l~~~~~~  147 (176)
                         ..+.+++.+|+..+|.+||++.+++  ..++.....
T Consensus       269 ~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~~~~  307 (343)
T cd07880         269 NANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHDP  307 (343)
T ss_pred             CCChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhhcCc
Confidence               1256788999999999999999988  555555444

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.90  E-value=2.3e-23  Score=154.60  Aligned_cols=131  Identities=22%  Similarity=0.230  Sum_probs=100.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----CccccceeeecC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIVVKG   83 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~~~   83 (176)
                      .+++..+..++.|++.|++|||+.+   ++|+||||+||+++.++.++++|||++.........    ...+...+.+|+
T Consensus        96 ~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  172 (269)
T cd05087          96 TPDPTTLQRMACEIALGLLHLHKNN---FIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPE  172 (269)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHCC---EeccccCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHh
Confidence            4677788899999999999999999   999999999999999999999999998654332211    111222233343


Q ss_pred             CCC--------CCCCcccchhhHhHHHHHHhc-cChHHH-----------------------------HHHHHHHHhhcc
Q 044320           84 THT--------QQLTEKSDIYGLGIACLYMGL-YSFEYL-----------------------------KRFMSLALKYCE  125 (176)
Q Consensus        84 ~~~--------~~~~~~~Dv~s~G~~l~~l~~-~~~~~~-----------------------------~~l~~l~~~~~~  125 (176)
                      ...        ..++.++|+||||+++|++.+ +..||.                             ..+.+++..|| 
T Consensus       173 ~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-  251 (269)
T cd05087         173 LVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-  251 (269)
T ss_pred             HhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHHHHh-
Confidence            321        235789999999999999975 665542                             23567889998 


Q ss_pred             cCCCCCCCHHHHHHHHH
Q 044320          126 DETKARPSMLEVARQLE  142 (176)
Q Consensus       126 ~~p~~Rp~~~~i~~~l~  142 (176)
                      .+|.+||++.+++..|+
T Consensus       252 ~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         252 LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             cCcccCCCHHHHHHHhc
Confidence            58999999999998764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.90  E-value=1.1e-23  Score=157.96  Aligned_cols=131  Identities=23%  Similarity=0.283  Sum_probs=102.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--CccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~~   83 (176)
                      ...+++..+..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++.........  ...+...+.+|+
T Consensus        97 ~~~~~~~~~~~~~~ql~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE  173 (291)
T cd07844          97 GGGLSMHNVRLFLFQLLRGLAYCHQRR---VLHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPD  173 (291)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccCCHHHEEEcCCCCEEECccccccccCCCCccccccccccccCCcH
Confidence            346899999999999999999999999   999999999999999999999999988654322211  111223333444


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHHH------------------------------------------------
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------------  113 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------------  113 (176)
                      ..  ...++.++|+||+|+++|+|.++..+|.                                                
T Consensus       174 ~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (291)
T cd07844         174 VLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLIN  253 (291)
T ss_pred             HhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHH
Confidence            32  3457889999999999999987765541                                                


Q ss_pred             --------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 --------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 --------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                              ..+.+++.+|+..+|++||++.++++
T Consensus       254 ~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         254 HAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             hCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence                    33458899999999999999998764

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.90  E-value=5.8e-24  Score=162.07  Aligned_cols=126  Identities=19%  Similarity=0.211  Sum_probs=102.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++......  .....|...+.+|+
T Consensus        95 ~~~l~~~~~~~i~~qi~~al~~lH~~~---ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  171 (323)
T cd05615          95 VGKFKEPQAVFYAAEISVGLFFLHRRG---IIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPE  171 (323)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEeccccccccCCCCccccCccCCccccCHH
Confidence            356999999999999999999999999   9999999999999999999999999987543222  11223444444444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      . ....++.++|+||+|+++|+|.++..||.                       ..+.+++.+|+..+|.+|++.
T Consensus       172 ~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         172 IIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             HHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHcccCHhhCCCC
Confidence            3 46678899999999999999998887752                       246789999999999999974

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.90  E-value=2.1e-23  Score=155.18  Aligned_cols=132  Identities=19%  Similarity=0.247  Sum_probs=105.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---CccccceeeecC-
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHVSIVVKG-   83 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~~~-   83 (176)
                      .+++..+..++.|++.||+|||+.+   ++|+||||+||+++.++.++++|||++.........   ...+...+.+|+ 
T Consensus       113 ~l~~~~~~~~~~~l~~~l~~LH~~~---i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~  189 (275)
T cd05046         113 PLSTKQKVALCTQIALGMDHLSNAR---FVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEA  189 (275)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhcC---cccCcCccceEEEeCCCcEEEcccccccccCcccccccCCceeEEeecChhh
Confidence            6899999999999999999999999   999999999999999999999999987654322211   111222233333 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhc-cChHH-------------------------HHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGL-YSFEY-------------------------LKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      ......+.++|+||||+++|++.+ +..+|                         +..+.+++.+||..+|.+||++.++
T Consensus       190 ~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~  269 (275)
T cd05046         190 VQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGKLELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSEL  269 (275)
T ss_pred             hccCCCCchhhHHHHHHHHHHHHhCCCCCccccchHHHHHHHHcCCcCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHH
Confidence            345667889999999999999876 33332                         3468899999999999999999999


Q ss_pred             HHHHH
Q 044320          138 ARQLE  142 (176)
Q Consensus       138 ~~~l~  142 (176)
                      +..|.
T Consensus       270 l~~l~  274 (275)
T cd05046         270 VSALG  274 (275)
T ss_pred             HHHhc
Confidence            98875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=8.5e-24  Score=167.32  Aligned_cols=131  Identities=21%  Similarity=0.308  Sum_probs=109.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC--CCCCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV--PNINGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~--~~~~~~~~~~~~~~~~   83 (176)
                      ++.|++.++..+++|++.||.|||+++   |||||||..|||++.+|.+++.|||++-....  .......|++||++|+
T Consensus       124 ~r~LtE~QIqvvc~q~ldALn~LHs~~---iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPE  200 (1187)
T KOG0579|consen  124 GRVLTEDQIQVVCYQVLDALNWLHSQN---IIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPE  200 (1187)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHhhcc---hhhhhccccceEEEecCcEeeecccccccchhHHhhhccccCCcccccch
Confidence            567999999999999999999999999   99999999999999999999999998754322  1233456777777665


Q ss_pred             CC------CCCCCcccchhhHhHHHHHHhc--------------------------cChHHHHHHHHHHHhhcccCCCCC
Q 044320           84 TH------TQQLTEKSDIYGLGIACLYMGL--------------------------YSFEYLKRFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~~------~~~~~~~~Dv~s~G~~l~~l~~--------------------------~~~~~~~~l~~l~~~~~~~~p~~R  131 (176)
                      ..      ..+|..++||||||+.|.||..                          .+..|...+.+++++|+..+|..|
T Consensus       201 VvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~~R  280 (1187)
T KOG0579|consen  201 VVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPRNR  280 (1187)
T ss_pred             heeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhcCCCcccCcchhhhHHHHHHHHHHhcCCccC
Confidence            42      7889999999999999999833                          334456679999999999999999


Q ss_pred             CCHHHHHH
Q 044320          132 PSMLEVAR  139 (176)
Q Consensus       132 p~~~~i~~  139 (176)
                      |+++++++
T Consensus       281 p~aaqll~  288 (1187)
T KOG0579|consen  281 PPAAQLLK  288 (1187)
T ss_pred             CCHHHHhh
Confidence            99988764

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.90  E-value=1.1e-23  Score=157.28  Aligned_cols=130  Identities=21%  Similarity=0.205  Sum_probs=103.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~~   84 (176)
                      ..+++..++.++.|++.||+|+|+.+   ++|+||+|+||+++.++.++++|||.+........  ....+...+.+|+.
T Consensus        94 ~~~~~~~~~~~~~~i~~~L~~lH~~~---~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~  170 (283)
T cd07835          94 TGLDPPLIKSYLYQLLQGIAYCHSHR---VLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEI  170 (283)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCHHHEEEcCCCcEEEeecccccccCCCccccCccccccCCCCCce
Confidence            46899999999999999999999998   99999999999999999999999999875433221  11122333444443


Q ss_pred             C--CCCCCcccchhhHhHHHHHHhccChHHH-------------------------------------------------
Q 044320           85 H--TQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------------------------------  113 (176)
Q Consensus        85 ~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------------------------------  113 (176)
                      .  ...++.++|+||||+++|++.++..+|.                                                 
T Consensus       171 ~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (283)
T cd07835         171 LLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVP  250 (283)
T ss_pred             eecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcC
Confidence            2  2346889999999999999988865431                                                 


Q ss_pred             ---HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 ---KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ---~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                         ..+.+++.+|++.+|.+||++.++++
T Consensus       251 ~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         251 NLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             CCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence               34677999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.90  E-value=9.7e-24  Score=163.22  Aligned_cols=132  Identities=20%  Similarity=0.247  Sum_probs=100.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----------------   69 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----------------   69 (176)
                      +..+++.++..++.|++.||+|||+++   ++||||||+||+++.++.++|+|||+++......                
T Consensus        95 ~~~l~~~~~~~~~~qi~~aL~~lH~~g---ivHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~  171 (363)
T cd05628          95 KDTLTEEETQFYIAETVLAIDSIHQLG---FIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDF  171 (363)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecCCCHHHeEECCCCCEEEeeccCcccccccccccccccccccccccc
Confidence            457999999999999999999999999   9999999999999999999999999986532110                


Q ss_pred             ---------------------CCCccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH--------------
Q 044320           70 ---------------------INGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------  113 (176)
Q Consensus        70 ---------------------~~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------  113 (176)
                                           .....|+..+.+|+. .+..++.++|+|||||++|||.++..||.              
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~  251 (363)
T cd05628         172 TFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYKKVMNW  251 (363)
T ss_pred             cccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcC
Confidence                                 011234454555544 46778899999999999999988877762              


Q ss_pred             -------------HHHHHHHHhhcc--cCCCCCCCHHHHHHH
Q 044320          114 -------------KRFMSLALKYCE--DETKARPSMLEVARQ  140 (176)
Q Consensus       114 -------------~~l~~l~~~~~~--~~p~~Rp~~~~i~~~  140 (176)
                                   ..+.+++.+++.  .++..||++.++++.
T Consensus       252 ~~~~~~p~~~~~s~~~~~li~~l~~~~~~r~~r~~~~ei~~h  293 (363)
T cd05628         252 KETLIFPPEVPISEKAKDLILRFCCEWEHRIGAPGVEEIKTN  293 (363)
T ss_pred             cCcccCCCcCCCCHHHHHHHHHHcCChhhcCCCCCHHHHhCC
Confidence                         134556665332  233456889988775

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.90  E-value=2.1e-23  Score=145.69  Aligned_cols=127  Identities=19%  Similarity=0.133  Sum_probs=103.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceee-ecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIV-VKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~-~~~~   84 (176)
                      +..|++++++.++.|++.||.|||+++         ||+||+++.++.+++  ||.+........   .+...+. |+..
T Consensus        11 ~~~l~~~~~~~i~~qi~~~L~~lH~~~---------kp~Nil~~~~~~~~~--fG~~~~~~~~~~---~g~~~y~aPE~~   76 (176)
T smart00750       11 GRPLNEEEIWAVCLQCLRALRELHRQA---------KSGNILLTWDGLLKL--DGSVAFKTPEQS---RVDPYFMAPEVI   76 (176)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhcC---------CcccEeEcCccceee--ccceEeeccccC---CCcccccChHHh
Confidence            567999999999999999999999875         999999999999998  998876544332   2334444 4444


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHHH-------------------------------H--HHHHHHHhhcccCCCCC
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------------K--RFMSLALKYCEDETKAR  131 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------------~--~l~~l~~~~~~~~p~~R  131 (176)
                      ....++.++|||||||++||+.++..||.                               .  .+.+++.+||..+|.+|
T Consensus        77 ~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~R  156 (176)
T smart00750       77 QGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQRR  156 (176)
T ss_pred             cCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhcccccc
Confidence            57788999999999999999988776542                               1  37889999999999999


Q ss_pred             CCHHHHHHHHHhhhh
Q 044320          132 PSMLEVARQLENISS  146 (176)
Q Consensus       132 p~~~~i~~~l~~~~~  146 (176)
                      |++.++++.+.....
T Consensus       157 p~~~~ll~~~~~~~~  171 (176)
T smart00750      157 EAANHYLAHCRALFA  171 (176)
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999998876644

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.90  E-value=1.3e-23  Score=156.89  Aligned_cols=131  Identities=17%  Similarity=0.137  Sum_probs=107.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      ...+++.++..++.|++.||.|||+.+   ++|+|++|+||+++.++.++++|||.+............+...+.+|+..
T Consensus        91 ~~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~  167 (278)
T cd05606          91 HGVFSEAEMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVL  167 (278)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---EEcCCCCHHHEEECCCCCEEEccCcCccccCccCCcCcCCCcCCcCcHHh
Confidence            456899999999999999999999999   99999999999999999999999999875543333233444455555543


Q ss_pred             --CCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCC-----
Q 044320           86 --TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARP-----  132 (176)
Q Consensus        86 --~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp-----  132 (176)
                        ...++.++|+||+|+++|++.++..||.                          ..+.+++.+|+..+|.+||     
T Consensus       168 ~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~  247 (278)
T cd05606         168 QKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGR  247 (278)
T ss_pred             cCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCC
Confidence              3357889999999999999988876652                          3577899999999999999     


Q ss_pred             CHHHHHH
Q 044320          133 SMLEVAR  139 (176)
Q Consensus       133 ~~~~i~~  139 (176)
                      ++.++++
T Consensus       248 ~~~~ll~  254 (278)
T cd05606         248 GAQEVKE  254 (278)
T ss_pred             CHHHHHh
Confidence            8888874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.90  E-value=1.2e-23  Score=158.74  Aligned_cols=131  Identities=25%  Similarity=0.221  Sum_probs=104.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-------------C
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-------------G   72 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-------------~   72 (176)
                      ...+++.++..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++.........             .
T Consensus       109 ~~~~~~~~~~~i~~~l~~al~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  185 (311)
T cd07866         109 SVKLTESQIKCYMLQLLEGINYLHENH---ILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTN  185 (311)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEECcCccchhccCCCcccccCCccccccccc
Confidence            457999999999999999999999999   999999999999999999999999998764432211             1


Q ss_pred             ccccceeeecCCC--CCCCCcccchhhHhHHHHHHhccChHHH-------------------------------------
Q 044320           73 VVGHVSIVVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------------------  113 (176)
Q Consensus        73 ~~~~~~~~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------------------  113 (176)
                      ..+...+.+|+..  ...++.++|+||||+++|++.++..+|.                                     
T Consensus       186 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (311)
T cd07866         186 LVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHS  265 (311)
T ss_pred             ceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhccccccccc
Confidence            1122334444432  3457889999999999999988765431                                     


Q ss_pred             ----------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 ----------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ----------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                      ..+.+++.+|+..+|++||++.+++.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         266 FTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             CCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence                            24668999999999999999988864

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.90  E-value=1.5e-23  Score=156.66  Aligned_cols=132  Identities=20%  Similarity=0.281  Sum_probs=105.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      +..+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+|+
T Consensus       118 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  194 (286)
T cd06638         118 GERMEEPIIAYILHEALMGLQHLHVNK---TIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPE  194 (286)
T ss_pred             CccccHHHHHHHHHHHHHHHHHHHhCC---ccccCCCHHhEEECCCCCEEEccCCceeecccCCCccccccCCCcccChh
Confidence            456889999999999999999999998   99999999999999999999999999876443221  1122333344444


Q ss_pred             CC------CCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCC
Q 044320           84 TH------TQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~~------~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~R  131 (176)
                      ..      ...++.++|+||+||++|++.++..++                          ...+.+++.+||+.+|++|
T Consensus       195 ~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  274 (286)
T cd06638         195 VIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALFKIPRNPPPTLHQPELWSNEFNDFIRKCLTKDYEKR  274 (286)
T ss_pred             hhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHhhccccCCCcccCCCCcCHHHHHHHHHHccCCcccC
Confidence            32      345788999999999999997776543                          1347889999999999999


Q ss_pred             CCHHHHHHH
Q 044320          132 PSMLEVARQ  140 (176)
Q Consensus       132 p~~~~i~~~  140 (176)
                      |++.++++.
T Consensus       275 ps~~ell~~  283 (286)
T cd06638         275 PTVSDLLQH  283 (286)
T ss_pred             CCHHHHhhc
Confidence            999999875

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.90  E-value=1.9e-23  Score=156.66  Aligned_cols=130  Identities=20%  Similarity=0.190  Sum_probs=102.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~~   84 (176)
                      ..+++.++..++.|++.||.|||+.+   ++|+||||+||+++.++.++++|||+++.......  ....+...+.+|+.
T Consensus        98 ~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  174 (291)
T cd07870          98 GGLHPYNVRLFMFQLLRGLAYIHGQH---ILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDV  174 (291)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHHEEEcCCCcEEEeccccccccCCCCCCCCCccccccccCCce
Confidence            45788899999999999999999999   99999999999999999999999998865432221  11122333444443


Q ss_pred             C--CCCCCcccchhhHhHHHHHHhccChHHH-------------------------------------------------
Q 044320           85 H--TQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------------------------------  113 (176)
Q Consensus        85 ~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------------------------------  113 (176)
                      .  ...++.++|+||+|+++|++.++..+|.                                                 
T Consensus       175 ~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (291)
T cd07870         175 LLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVV  254 (291)
T ss_pred             eecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhh
Confidence            3  2356788999999999999988776541                                                 


Q ss_pred             -------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 -------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 -------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                             ..+.+++.+|+..+|.+|||+.+++.
T Consensus       255 ~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         255 WKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             ccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence                   24567999999999999999998764

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.90  E-value=1.1e-23  Score=157.82  Aligned_cols=131  Identities=24%  Similarity=0.244  Sum_probs=105.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKG-   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~-   83 (176)
                      ...+++..+..++.|++.||.|+|+.+   ++||||+|+||+++.++.++++|||++....... .....+...+.+|+ 
T Consensus        96 ~~~~~~~~~~~~~~ql~~~l~~lH~~~---iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~~~aPE~  172 (285)
T cd05632          96 NPGFEEERALFYAAEILCGLEDLHREN---TVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRGRVGTVGYMAPEV  172 (285)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCCHHHEEECCCCCEEEecCCcceecCCCCcccCCCCCcCccChHH
Confidence            346999999999999999999999999   9999999999999999999999999886543322 12223444444444 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCCC---
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARPS---  133 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp~---  133 (176)
                      .....++.++|+||+|+++|++.++..||.                           ..+.+++.+|++.+|++||+   
T Consensus       173 ~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~  252 (285)
T cd05632         173 LNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQE  252 (285)
T ss_pred             hcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhccccccCccCCHHHHHHHHHHccCCHhHcCCCcc
Confidence            346778899999999999999988877652                           23678999999999999999   


Q ss_pred             --HHHHHH
Q 044320          134 --MLEVAR  139 (176)
Q Consensus       134 --~~~i~~  139 (176)
                        +.+++.
T Consensus       253 ~~~~~l~~  260 (285)
T cd05632         253 EGAGEVKR  260 (285)
T ss_pred             cChHHHHc
Confidence              556655

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.90  E-value=1.4e-23  Score=153.34  Aligned_cols=125  Identities=16%  Similarity=0.053  Sum_probs=99.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHT   86 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (176)
                      ..+++.++..++.|++.||.|+|+.+   ++|+||||+||+++.++.++++|||.+...............+.+++....
T Consensus        80 ~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~~~  156 (237)
T cd05576          80 LNIPEECVKRWAAEMVVALDALHREG---IVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEVGGI  156 (237)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEEcCCCCEEEecccchhccccccccCCcCccccCCcccCC
Confidence            45899999999999999999999999   999999999999999999999999987554432221111122333333345


Q ss_pred             CCCCcccchhhHhHHHHHHhccChHH-------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           87 QQLTEKSDIYGLGIACLYMGLYSFEY-------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        87 ~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      ..++.++|+||+|+++|++.++..++                   ...+.+++.+|++.+|++||++
T Consensus       157 ~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~  223 (237)
T cd05576         157 SEETEACDWWSLGAILFELLTGKTLVECHPSGINTHTTLNIPEWVSEEARSLLQQLLQFNPTERLGA  223 (237)
T ss_pred             CCCCchhhHHHHHHHHHHHHHCcchhhcCchhcccccccCCcccCCHHHHHHHHHHccCCHHHhcCC
Confidence            66788999999999999998876432                   2357889999999999999986

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.90  E-value=2.2e-23  Score=155.29  Aligned_cols=131  Identities=24%  Similarity=0.309  Sum_probs=106.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--CccccceeeecC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIVVKG-   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~~-   83 (176)
                      ..+++..+..++.|++.|+.|||+.+   ++|+||+|+||+++.++.++++|||++.........  ...+...+.+|+ 
T Consensus        96 ~~~~~~~~~~~~~~i~~~l~~lH~~~---ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  172 (277)
T cd06642          96 GPLEETYIATILREILKGLDYLHSER---KIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEV  172 (277)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCC---eeccCCChheEEEeCCCCEEEccccccccccCcchhhhcccCcccccCHHH
Confidence            46899999999999999999999999   999999999999999999999999998765432211  112333333333 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHHH------------------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      .....++.++|+||||+++|++.++..|+.                        ..+.+++.+||..+|.+||++.+++.
T Consensus       173 ~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  252 (277)
T cd06642         173 IKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLK  252 (277)
T ss_pred             hCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhHHhhhhcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence            345667889999999999999988776642                        34788999999999999999999987


Q ss_pred             H
Q 044320          140 Q  140 (176)
Q Consensus       140 ~  140 (176)
                      .
T Consensus       253 ~  253 (277)
T cd06642         253 H  253 (277)
T ss_pred             h
Confidence            3

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.1e-23  Score=160.74  Aligned_cols=125  Identities=19%  Similarity=0.176  Sum_probs=106.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~~   84 (176)
                      +..|+++.++.||.+|+.||++||..+   ||+|||||+|||+|++|+++|+|.|++-.+..... .+..|+.++++|+.
T Consensus       281 ~~gF~e~ra~FYAAEi~cGLehlH~~~---iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~~~~rvGT~GYMAPEv  357 (591)
T KOG0986|consen  281 NPGFDEQRARFYAAEIICGLEHLHRRR---IVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKPIRGRVGTVGYMAPEV  357 (591)
T ss_pred             CCCCchHHHHHHHHHHHhhHHHHHhcc---eeeccCChhheeeccCCCeEeeccceEEecCCCCccccccCcccccCHHH
Confidence            467999999999999999999999999   99999999999999999999999999987765543 34477777777665


Q ss_pred             C-CCCCCcccchhhHhHHHHHHhccChHHHH---------------------------HHHHHHHhhcccCCCCCCC
Q 044320           85 H-TQQLTEKSDIYGLGIACLYMGLYSFEYLK---------------------------RFMSLALKYCEDETKARPS  133 (176)
Q Consensus        85 ~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~---------------------------~l~~l~~~~~~~~p~~Rp~  133 (176)
                      . ...|+.+.|+||+||++|||..+..||-+                           +..+++...+..+|++|-.
T Consensus       358 l~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~~~ey~~kFS~eakslc~~LL~Kdp~~RLG  434 (591)
T KOG0986|consen  358 LQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLEDPEEYSDKFSEEAKSLCEGLLTKDPEKRLG  434 (591)
T ss_pred             HcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcchhhcccccCHHHHHHHHHHHccCHHHhcc
Confidence            4 77799999999999999999888888743                           4677778888888888754

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.90  E-value=1.7e-23  Score=155.94  Aligned_cols=130  Identities=16%  Similarity=0.173  Sum_probs=105.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~~   84 (176)
                      ..+++.+++.++.|++.||.|||..+   ++|+||+|+||+++.++.++++|||.+.......  .....+..++.+|+.
T Consensus        93 ~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~  169 (283)
T cd05118          93 RGLPESLIKSYLYQLLQGLAFCHSHG---ILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPEL  169 (283)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHCC---eeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccccCccCcccccCcHH
Confidence            57899999999999999999999999   9999999999999999999999999887655432  111223333333433


Q ss_pred             -CCC-CCCcccchhhHhHHHHHHhccChHH--------------------------------------------------
Q 044320           85 -HTQ-QLTEKSDIYGLGIACLYMGLYSFEY--------------------------------------------------  112 (176)
Q Consensus        85 -~~~-~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------------------------------  112 (176)
                       ... .++.++|+||+|+++|++.++..+|                                                  
T Consensus       170 ~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (283)
T cd05118         170 LLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLF  249 (283)
T ss_pred             HhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhh
Confidence             333 6788999999999999998886543                                                  


Q ss_pred             ---HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ---LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ---~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                         ..++.+++.+||..+|.+||++.+++.
T Consensus       250 ~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         250 PNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             hhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence               235779999999999999999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=6.6e-24  Score=164.04  Aligned_cols=130  Identities=20%  Similarity=0.194  Sum_probs=103.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---------------   70 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---------------   70 (176)
                      +..+++.++..++.|++.||+|||+.+   ++||||||+||+++.++.++++|||++........               
T Consensus        95 ~~~l~~~~~~~~~~qi~~aL~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~  171 (364)
T cd05599          95 KDTFTEEETRFYIAETILAIDSIHKLG---YIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNF  171 (364)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEeecccceeccccccccccccccccccccc
Confidence            456999999999999999999999999   99999999999999999999999998865321110               


Q ss_pred             -------------------------CCccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH-----------
Q 044320           71 -------------------------NGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------  113 (176)
Q Consensus        71 -------------------------~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------  113 (176)
                                               ....|+..+.+|+. ....++.++|+|||||++|+|.++..||.           
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~~~~~~i  251 (364)
T cd05599         172 LDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQETYRKI  251 (364)
T ss_pred             cccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCCHHHHHHHH
Confidence                                     01124444555443 36678899999999999999988877652           


Q ss_pred             ----------------HHHHHHHHhhcccCCCCCCC---HHHHHH
Q 044320          114 ----------------KRFMSLALKYCEDETKARPS---MLEVAR  139 (176)
Q Consensus       114 ----------------~~l~~l~~~~~~~~p~~Rp~---~~~i~~  139 (176)
                                      ..+.+++.+|+. +|.+|++   +.++++
T Consensus       252 ~~~~~~~~~~~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~  295 (364)
T cd05599         252 INWKETLQFPDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKS  295 (364)
T ss_pred             HcCCCccCCCCCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhc
Confidence                            346788888886 8999987   777765

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=1.6e-23  Score=155.75  Aligned_cols=129  Identities=28%  Similarity=0.320  Sum_probs=106.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC-C
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG-T   84 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~-~   84 (176)
                      .+++.++..++.|++.|+.|+|+.+   ++|+||+|+||+++.++.++++|||++.......  .....+...+.+|+ .
T Consensus        94 ~~~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~  170 (274)
T cd06609          94 KLDETYIAFILREVLLGLEYLHEEG---KIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVI  170 (274)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEcccccceeecccccccccccCCccccChhhh
Confidence            7899999999999999999999999   9999999999999999999999999987655332  11222333333343 3


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      .+..++.++|+||||+++|++.++..||                         +..+.+++.+||..+|++||++.++++
T Consensus       171 ~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~  250 (274)
T cd06609         171 KQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKNNPPSLEGNKFSKPFKDFVSLCLNKDPKERPSAKELLK  250 (274)
T ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHHHHHHhhhcCCCCCcccccCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence            4566889999999999999998887764                         235889999999999999999999876

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.90  E-value=1.2e-23  Score=158.52  Aligned_cols=131  Identities=19%  Similarity=0.226  Sum_probs=106.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG-   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~-   83 (176)
                      ..+++.+++.++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+|+ 
T Consensus       112 ~~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  188 (297)
T cd06659         112 TRLNEEQIATVCESVLQALCYLHSQG---VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEV  188 (297)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHeEEccCCcEEEeechhHhhcccccccccceecCccccCHHH
Confidence            46899999999999999999999999   99999999999999999999999998865432211  1122333344444 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      .....++.++|+||||+++|++.++..||                          ...+.+++.+||..+|.+||++.++
T Consensus       189 ~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~l  268 (297)
T cd06659         189 ISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQEL  268 (297)
T ss_pred             HccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCcccCcCHHHH
Confidence            33566788999999999999998887654                          2357889999999999999999999


Q ss_pred             HHH
Q 044320          138 ARQ  140 (176)
Q Consensus       138 ~~~  140 (176)
                      ++.
T Consensus       269 l~~  271 (297)
T cd06659         269 LDH  271 (297)
T ss_pred             hhC
Confidence            885

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=2.3e-23  Score=173.58  Aligned_cols=127  Identities=24%  Similarity=0.291  Sum_probs=102.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCC--------------------CCC
Q 044320           10 SLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP--------------------VPN   69 (176)
Q Consensus        10 ~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~--------------------~~~   69 (176)
                      .....++++++|+.||.|+|.+|   +|||||||.||++++++.+||+|||++....                    ...
T Consensus       695 ~~d~~wrLFreIlEGLaYIH~~g---iIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~  771 (1351)
T KOG1035|consen  695 QRDEAWRLFREILEGLAYIHDQG---IIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGD  771 (1351)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCc---eeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcc
Confidence            46789999999999999999999   9999999999999999999999999987611                    112


Q ss_pred             CCCccccceeeecCCC----CCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHH
Q 044320           70 INGVVGHVSIVVKGTH----TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLA  120 (176)
Q Consensus        70 ~~~~~~~~~~~~~~~~----~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~  120 (176)
                      .++..|+.-|++|++.    ...|+.+.|+||+|+++.||...-..-                         ...-..+|
T Consensus       772 ~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yPF~TsMERa~iL~~LR~g~iP~~~~f~~~~~~~e~slI  851 (1351)
T KOG1035|consen  772 LTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYPFGTSMERASILTNLRKGSIPEPADFFDPEHPEEASLI  851 (1351)
T ss_pred             cccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhccCCchHHHHHHHHhcccCCCCCCcccccccchHHHHHH
Confidence            3345677777777765    236999999999999999994321111                         12356799


Q ss_pred             HhhcccCCCCCCCHHHHHH
Q 044320          121 LKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       121 ~~~~~~~p~~Rp~~~~i~~  139 (176)
                      .++++.||.+|||+.+++.
T Consensus       852 ~~Ll~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  852 RWLLSHDPSKRPTATELLN  870 (1351)
T ss_pred             HHHhcCCCccCCCHHHHhh
Confidence            9999999999999998764

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.90  E-value=1.6e-23  Score=160.08  Aligned_cols=162  Identities=16%  Similarity=0.112  Sum_probs=116.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC------CCcccccee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI------NGVVGHVSI   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~------~~~~~~~~~   79 (176)
                      ...+++.+++.++.|++.||+|||+.+   ++|+||||+||+++.++.++|+|||.+........      ....+...+
T Consensus        99 ~~~~~~~~~~~~~~qi~~aL~~LH~~g---ivH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y  175 (332)
T cd07857          99 GQPLTDAHFQSFIYQILCGLKYIHSAN---VLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWY  175 (332)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccc
Confidence            456899999999999999999999999   99999999999999999999999999875432211      112233344


Q ss_pred             eecCC-C-CCCCCcccchhhHhHHHHHHhccChHH---------------------------------------------
Q 044320           80 VVKGT-H-TQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------------  112 (176)
Q Consensus        80 ~~~~~-~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------------  112 (176)
                      .+|+. . ...++.++|+||+|+++|++.++..+|                                             
T Consensus       176 ~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (332)
T cd07857         176 RAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKK  255 (332)
T ss_pred             cCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCc
Confidence            44443 2 346788999999999999997776433                                             


Q ss_pred             ---------HHHHHHHHHhhcccCCCCCCCHHHHHHH--HHhhhhcC-CCCCCCCCCCCCCCCcchhhhh
Q 044320          113 ---------LKRFMSLALKYCEDETKARPSMLEVARQ--LENISSML-PESDTIPTESDISASGEILEYF  170 (176)
Q Consensus       113 ---------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~--l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  170 (176)
                               ...+.+++.+|+..+|++||++.++++.  +.+..+.. ..-...+......+++++.+..
T Consensus       256 ~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (332)
T cd07857         256 PFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEHPYLAIWHDPDDEPVCQKPFDFSFESEDSMEELR  325 (332)
T ss_pred             chHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhhhhcCccccccccccccCCccccccHHHHH
Confidence                     1246789999999999999999988643  22222221 1113334444555555555443

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.90  E-value=4.7e-23  Score=153.00  Aligned_cols=132  Identities=21%  Similarity=0.246  Sum_probs=97.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~~   82 (176)
                      ..+++..+..++.|++.||+|+|+.+   ++|+||||+||+++.++.++++|||++.......    .....+...+.+|
T Consensus        94 ~~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  170 (268)
T cd05086          94 RNSQLLLLQRMACEIAAGVTHMHKHN---FLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAP  170 (268)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHCC---eeccCCccceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCc
Confidence            34677788899999999999999998   9999999999999999999999999875432211    1111222223333


Q ss_pred             CCC--------CCCCCcccchhhHhHHHHHHhcc-ChHH-----------------------------HHHHHHHHHhhc
Q 044320           83 GTH--------TQQLTEKSDIYGLGIACLYMGLY-SFEY-----------------------------LKRFMSLALKYC  124 (176)
Q Consensus        83 ~~~--------~~~~~~~~Dv~s~G~~l~~l~~~-~~~~-----------------------------~~~l~~l~~~~~  124 (176)
                      +..        ...++.++|+||||+++|++.++ ..||                             ...+.+++..||
T Consensus       171 E~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~  250 (268)
T cd05086         171 ELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYEVLQFCW  250 (268)
T ss_pred             hhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcHHHHHHHHHHh
Confidence            322        23457789999999999999653 2222                             123567888898


Q ss_pred             ccCCCCCCCHHHHHHHHH
Q 044320          125 EDETKARPSMLEVARQLE  142 (176)
Q Consensus       125 ~~~p~~Rp~~~~i~~~l~  142 (176)
                       .+|.+||++.++++.|.
T Consensus       251 -~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         251 -LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             -hCcccCCCHHHHHHHhc
Confidence             67999999999988774

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=9.9e-24  Score=149.27  Aligned_cols=135  Identities=21%  Similarity=0.232  Sum_probs=117.0

Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceee-e
Q 044320            3 SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIV-V   81 (176)
Q Consensus         3 ~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~-~   81 (176)
                      .+....+++.....|+.|+|.|+.|||..+   ++|||+||+|+|++..+.+|++|||++-..+.+......|+..+. +
T Consensus       115 ~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~---VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~kR~tlcgt~dyl~p  191 (281)
T KOG0580|consen  115 EGRMKRFDEQRAATYIKQLANALLYCHLKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPSNKRKTLCGTLDYLPP  191 (281)
T ss_pred             hcccccccccchhHHHHHHHHHHHHhccCC---cccCCCCHHHhccCCCCCeeccCCCceeecCCCCceeeecccccCCH
Confidence            346678999999999999999999999998   999999999999999999999999999877755555555665554 5


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhccChHHHH-----------------------HHHHHHHhhcccCCCCCCCHHHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGLYSFEYLK-----------------------RFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~-----------------------~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                      +...+...+...|+|++|+++||++.+..||..                       ..+++|.+|+..+|.+|....+++
T Consensus       192 Emv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~~~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~v~  271 (281)
T KOG0580|consen  192 EMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKVDLKFPSTISGGAADLISRLLVKNPIERLALTEVM  271 (281)
T ss_pred             hhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHccccCCcccChhHHHHHHHHhccCccccccHHHHh
Confidence            555688889999999999999999999999854                       378899999999999999998887


Q ss_pred             HH
Q 044320          139 RQ  140 (176)
Q Consensus       139 ~~  140 (176)
                      +.
T Consensus       272 ~h  273 (281)
T KOG0580|consen  272 DH  273 (281)
T ss_pred             hh
Confidence            65

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.90  E-value=1.4e-23  Score=161.18  Aligned_cols=129  Identities=17%  Similarity=0.179  Sum_probs=104.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH-   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~-   85 (176)
                      ..+++.+++.++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++......... ..+...+.+++.. 
T Consensus       113 ~~l~~~~~~~~~~ql~~aL~~LH~~g---i~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~-~~~~~~y~aPE~~~  188 (343)
T cd07851         113 QKLSDDHIQFLVYQILRGLKYIHSAG---IIHRDLKPSNIAVNEDCELKILDFGLARHTDDEMTG-YVATRWYRAPEIML  188 (343)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEccccccccccccccC-CcccccccCHHHHh
Confidence            46899999999999999999999999   999999999999999999999999998765443221 1223333334332 


Q ss_pred             -CCCCCcccchhhHhHHHHHHhccChHH----------------------------------------------------
Q 044320           86 -TQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------------------------  112 (176)
Q Consensus        86 -~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------------------------  112 (176)
                       ...++.++|+||+|+++|++.++..+|                                                    
T Consensus       189 ~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (343)
T cd07851         189 NWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFS  268 (343)
T ss_pred             CCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhc
Confidence             235788999999999999998876554                                                    


Q ss_pred             --HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 --LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 --~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                        ...+.+++.+|+..+|++||++.++++
T Consensus       269 ~~s~~l~dli~~~l~~~P~~Rpt~~ell~  297 (343)
T cd07851         269 GANPLAIDLLEKMLVLDPDKRITAAEALA  297 (343)
T ss_pred             cCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence              234668999999999999999999876

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.90  E-value=1.8e-23  Score=154.98  Aligned_cols=129  Identities=25%  Similarity=0.278  Sum_probs=101.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-----CCCccccceee-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-----INGVVGHVSIV-   80 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-----~~~~~~~~~~~-   80 (176)
                      ..+++...+.++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||+++......     .....+...+. 
T Consensus       101 ~~l~~~~~~~~~~qi~~~l~~LH~~~---i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  177 (266)
T cd06651         101 GALTESVTRKYTRQILEGMSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMS  177 (266)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccC
Confidence            45889999999999999999999998   9999999999999999999999999987543211     11122333333 


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++|+||+|+++|++.++..||.                         ..+.+++ .||..+|++||++.
T Consensus       178 PE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~  256 (266)
T cd06651         178 PEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHARDFL-GCIFVEARHRPSAE  256 (266)
T ss_pred             HHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchHHHHHHHhcCCCCCCCchhcCHHHHHHH-HHhcCChhhCcCHH
Confidence            333446677889999999999999988877752                         1245565 68889999999999


Q ss_pred             HHHH
Q 044320          136 EVAR  139 (176)
Q Consensus       136 ~i~~  139 (176)
                      ++++
T Consensus       257 eil~  260 (266)
T cd06651         257 ELLR  260 (266)
T ss_pred             HHhc
Confidence            9865

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.90  E-value=2.9e-23  Score=154.74  Aligned_cols=131  Identities=24%  Similarity=0.300  Sum_probs=106.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG-   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~-   83 (176)
                      .++++.++..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+++ 
T Consensus        96 ~~l~~~~~~~~~~~l~~~l~~lh~~~---ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~  172 (277)
T cd06640          96 GPFDEFQIATMLKEILKGLDYLHSEK---KIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEV  172 (277)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---ccCcCCChhhEEEcCCCCEEEcccccceeccCCccccccccCcccccCHhH
Confidence            45889999999999999999999999   99999999999999999999999999866543221  1112233334443 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      .....++.++|+||||+++|++.++..|+                        +..+.+++.+||..+|++||++.+++.
T Consensus       173 ~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  252 (277)
T cd06640         173 IQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLK  252 (277)
T ss_pred             hccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhHhhhhhcCCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHh
Confidence            34566788999999999999998887654                        345788999999999999999999976


Q ss_pred             H
Q 044320          140 Q  140 (176)
Q Consensus       140 ~  140 (176)
                      .
T Consensus       253 ~  253 (277)
T cd06640         253 H  253 (277)
T ss_pred             C
Confidence            5

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.90  E-value=1.5e-23  Score=157.78  Aligned_cols=132  Identities=20%  Similarity=0.339  Sum_probs=103.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~   83 (176)
                      ...+++..+..++.|++.||+|||+ .+   ++|+||+|+||+++.++.++|+|||.+........ ....+...+.+|+
T Consensus       108 ~~~l~~~~~~~i~~~i~~~l~~lH~~~~---i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~y~aPE  184 (296)
T cd06618         108 QGPIPEDILGKMTVAIVKALHYLKEKHG---VIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRSAGCAAYMAPE  184 (296)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhhCC---EecCCCcHHHEEEcCCCCEEECccccchhccCCCcccCCCCCccccCHh
Confidence            3478999999999999999999997 57   99999999999999999999999999875433221 1122222333333


Q ss_pred             CC-C----CCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCC
Q 044320           84 TH-T----QQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~~-~----~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                      .. .    ..++.++|+||||+++|++.++..||.                           .++.+++.+||..+|.+|
T Consensus       185 ~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R  264 (296)
T cd06618         185 RIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKR  264 (296)
T ss_pred             hcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHccCChhhC
Confidence            32 2    347889999999999999988776642                           247899999999999999


Q ss_pred             CCHHHHHHH
Q 044320          132 PSMLEVARQ  140 (176)
Q Consensus       132 p~~~~i~~~  140 (176)
                      |++.++++.
T Consensus       265 p~~~~il~~  273 (296)
T cd06618         265 PKYRELLQH  273 (296)
T ss_pred             CCHHHHhcC
Confidence            999988765

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.90  E-value=2.9e-23  Score=158.93  Aligned_cols=136  Identities=19%  Similarity=0.192  Sum_probs=107.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-------CCccccceee
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-------NGVVGHVSIV   80 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-------~~~~~~~~~~   80 (176)
                      .+++..++.++.|++.||+|||+.+   ++|+||+|+||+++.++.++++|||.+........       ....+..++.
T Consensus       103 ~~~~~~~~~i~~qi~~~L~~LH~~~---i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~  179 (337)
T cd07852         103 ILEDVHKRYIMYQLLKALKYIHSGN---VIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYR  179 (337)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhccccccccc
Confidence            6889999999999999999999999   99999999999999999999999998876433221       1122333444


Q ss_pred             ecCCC--CCCCCcccchhhHhHHHHHHhccChHH----------------------------------------------
Q 044320           81 VKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------------------  112 (176)
Q Consensus        81 ~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------------------  112 (176)
                      +|+..  ...++.++|+||||+++|++.++..+|                                              
T Consensus       180 aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (337)
T cd07852         180 APEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKP  259 (337)
T ss_pred             CceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccc
Confidence            44432  345778999999999999998887544                                              


Q ss_pred             --------HHHHHHHHHhhcccCCCCCCCHHHHHHH--HHhhhh
Q 044320          113 --------LKRFMSLALKYCEDETKARPSMLEVARQ--LENISS  146 (176)
Q Consensus       113 --------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~--l~~~~~  146 (176)
                              +..+.+++.+||+.+|.+||++.++++.  +.++..
T Consensus       260 ~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~~~  303 (337)
T cd07852         260 LDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQFHN  303 (337)
T ss_pred             hhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhhcc
Confidence                    2246789999999999999999999865  444433

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.90  E-value=2e-23  Score=156.48  Aligned_cols=131  Identities=24%  Similarity=0.337  Sum_probs=105.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeec-CC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVK-GT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~-~~   84 (176)
                      ...+++..+..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++............+...+.++ ..
T Consensus        99 ~~~l~~~~~~~i~~~i~~~L~~lH~~~---i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~~pE~~  175 (287)
T cd06621          99 GGRIGEKVLGKIAESVLKGLSYLHSRK---IIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTGTSFYMAPERI  175 (287)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEecCCeEEEeeccccccccccccccccCCccccCHHHh
Confidence            456889999999999999999999999   99999999999999999999999999875443322222222333333 33


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH-----------------------------------HHHHHHHHHhhcccCCC
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------------------LKRFMSLALKYCEDETK  129 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------------------~~~l~~l~~~~~~~~p~  129 (176)
                      ....++.++|+||+|+++|++.++..||                                   .+.+.+++.+||..+|.
T Consensus       176 ~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  255 (287)
T cd06621         176 QGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPT  255 (287)
T ss_pred             cCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHHHHHHcCCCcc
Confidence            4667888999999999999998775443                                   22467999999999999


Q ss_pred             CCCCHHHHHH
Q 044320          130 ARPSMLEVAR  139 (176)
Q Consensus       130 ~Rp~~~~i~~  139 (176)
                      +||++.++++
T Consensus       256 ~Rpt~~eil~  265 (287)
T cd06621         256 RRPTPWDMLE  265 (287)
T ss_pred             cCCCHHHHHh
Confidence            9999998877

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.90  E-value=2.3e-23  Score=153.33  Aligned_cols=132  Identities=20%  Similarity=0.236  Sum_probs=106.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--Cccccceeee-c
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIVV-K   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~-~   82 (176)
                      ...+++.+++.++.|++.|+.|+|+.+   ++|+||+|+||+++.++.++++|||.+.........  ...+...+.+ +
T Consensus        95 ~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe  171 (256)
T cd08218          95 GVLFPEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPE  171 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhhhhccCCccccCHH
Confidence            346889999999999999999999999   999999999999999999999999988765432211  1112222333 3


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                      ...+..++.++|+||||++++++.++..++                        ...+.+++.+||+.+|.+||++.+++
T Consensus       172 ~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl  251 (256)
T cd08218         172 ICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSIL  251 (256)
T ss_pred             HhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHhhCChhhCcCHHHHh
Confidence            334667788999999999999998887654                        23578999999999999999999998


Q ss_pred             HH
Q 044320          139 RQ  140 (176)
Q Consensus       139 ~~  140 (176)
                      +.
T Consensus       252 ~~  253 (256)
T cd08218         252 EK  253 (256)
T ss_pred             hC
Confidence            63

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.90  E-value=4.7e-23  Score=153.77  Aligned_cols=130  Identities=17%  Similarity=0.191  Sum_probs=105.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecCCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKGTH   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~~~   85 (176)
                      ..+++.++..++.|++.+|.|||+.+   ++|+||+|+||+++.++.++++|||.+........ ....+...+.+++..
T Consensus        94 ~~~~~~~~~~~~~~l~~~l~~Lh~~~---i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~aPE~~  170 (283)
T cd07830          94 KPFSESVIRSIIYQILQGLAHIHKHG---FFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEIL  170 (283)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEEcCCCCEEEeecccceeccCCCCcCCCCCcccccCceee
Confidence            57899999999999999999999999   99999999999999999999999999876543322 122233344444432


Q ss_pred             --CCCCCcccchhhHhHHHHHHhccChHHH--------------------------------------------------
Q 044320           86 --TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------------------------------  113 (176)
Q Consensus        86 --~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------------------------------  113 (176)
                        ...++.++|+||||++++++.++..+|.                                                  
T Consensus       171 ~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (283)
T cd07830         171 LRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIP  250 (283)
T ss_pred             ecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcc
Confidence              4457889999999999999988764431                                                  


Q ss_pred             ---HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 ---KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ---~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                         ..+.+++.+||..+|++||++.+++.
T Consensus       251 ~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         251 NASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             cCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence               35779999999999999999998875

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.90  E-value=9.2e-24  Score=156.11  Aligned_cols=130  Identities=26%  Similarity=0.379  Sum_probs=104.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceee-ecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIV-VKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~-~~~~   84 (176)
                      ..+++..+..++.|++.|++|+|+ .+   ++|+||+|+||+++.++.++++|||.+............+...+. ++..
T Consensus        95 ~~~~~~~~~~~~~~l~~~l~~lH~~~~---i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~y~~PE~~  171 (265)
T cd06605          95 GRIPERILGKIAVAVLKGLTYLHEKHK---IIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERI  171 (265)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHcCCCC---eecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhcccCChhccCHHHH
Confidence            678999999999999999999999 88   999999999999999999999999988654322211122333333 3333


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH------------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      .+..++.++|+||+|+++|++.++..|+                              ...+.+++.+||..+|++||++
T Consensus       172 ~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~  251 (265)
T cd06605         172 QGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRLPSGKFSPDFQDFVNLCLIKDPRERPSY  251 (265)
T ss_pred             cCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHcCCCchhCcCH
Confidence            4567889999999999999998866543                              2247889999999999999999


Q ss_pred             HHHHH
Q 044320          135 LEVAR  139 (176)
Q Consensus       135 ~~i~~  139 (176)
                      .+++.
T Consensus       252 ~~ll~  256 (265)
T cd06605         252 KELLE  256 (265)
T ss_pred             HHHhh
Confidence            99875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.90  E-value=1.2e-23  Score=155.04  Aligned_cols=133  Identities=20%  Similarity=0.223  Sum_probs=105.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----------CCcccc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----------NGVVGH   76 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----------~~~~~~   76 (176)
                      ..+++.+++.++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++........          ....+.
T Consensus        88 ~~~~~~~~~~i~~qi~~~L~~lH~~~---i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (265)
T cd05579          88 GSLDEDVARIYIAEIVLALEYLHSNG---IIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGT  164 (265)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcC---eecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccC
Confidence            36899999999999999999999999   99999999999999999999999998875433211          111222


Q ss_pred             ceeeec-CCCCCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCC
Q 044320           77 VSIVVK-GTHTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKA  130 (176)
Q Consensus        77 ~~~~~~-~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~  130 (176)
                      ..+.+| .......+.++|+||||+++|++.++..+|                         +..+.+++.+||..+|.+
T Consensus       165 ~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~  244 (265)
T cd05579         165 PDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIEWPEDVEVSDEAIDLISKLLVPDPEK  244 (265)
T ss_pred             ccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCcCCCccccCCHHHHHHHHHHhcCCHhh
Confidence            223333 333555788999999999999998876654                         456889999999999999


Q ss_pred             CCCHHHHHHHHH
Q 044320          131 RPSMLEVARQLE  142 (176)
Q Consensus       131 Rp~~~~i~~~l~  142 (176)
                      ||++..+.+.|+
T Consensus       245 Rpt~~~~~~~l~  256 (265)
T cd05579         245 RLGAKSIEEIKN  256 (265)
T ss_pred             cCCCccHHHHhc
Confidence            999966666554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=2.4e-23  Score=155.32  Aligned_cols=132  Identities=20%  Similarity=0.276  Sum_probs=104.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      +..+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+|+
T Consensus        97 ~~~l~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE  173 (280)
T cd06611          97 ERGLTEPQIRYVCRQMLEALNFLHSHK---VIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPE  173 (280)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEECCCCCEEEccCccchhhcccccccceeecchhhcCHH
Confidence            456999999999999999999999999   99999999999999999999999998765432211  1122333333333


Q ss_pred             C------CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCC
Q 044320           84 T------HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~------~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                      .      ....++.++|+||||+++|++.++..||.                          ..+.+++.+||..+|.+|
T Consensus       174 ~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  253 (280)
T cd06611         174 VVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDR  253 (280)
T ss_pred             HHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHHHHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhC
Confidence            2      23456789999999999999988776542                          357889999999999999


Q ss_pred             CCHHHHHHH
Q 044320          132 PSMLEVARQ  140 (176)
Q Consensus       132 p~~~~i~~~  140 (176)
                      |++.++++.
T Consensus       254 ps~~~il~~  262 (280)
T cd06611         254 PTAAELLKH  262 (280)
T ss_pred             cCHHHHhcC
Confidence            999988764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.89  E-value=3.6e-23  Score=172.69  Aligned_cols=140  Identities=24%  Similarity=0.301  Sum_probs=110.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-----------------
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-----------------   69 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-----------------   69 (176)
                      ..+++..++.++.|++.||+|+|+.+   ++||||||+||+++.++.++++|||+++......                 
T Consensus       108 ~~lsv~~iL~I~~QIa~AL~yLHs~G---IIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~  184 (932)
T PRK13184        108 EKTSVGAFLSIFHKICATIEYVHSKG---VLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSS  184 (932)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchheEEEcCCCCEEEEecCcceecccccccccccccccccccccc
Confidence            34667788999999999999999999   9999999999999999999999999987652110                 


Q ss_pred             ---CCCccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHH
Q 044320           70 ---INGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSL  119 (176)
Q Consensus        70 ---~~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l  119 (176)
                         .....|...+.+|+. .+..++.++||||+||++|+|.++..||.                          ..+.++
T Consensus       185 ~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~~~~~i~~P~~~~p~~~iP~~L~~L  264 (932)
T PRK13184        185 MTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKISYRDVILSPIEVAPYREIPPFLSQI  264 (932)
T ss_pred             cccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhhhhhhccChhhccccccCCHHHHHH
Confidence               011234444554443 46678899999999999999998876652                          247889


Q ss_pred             HHhhcccCCCCCC-CHHHHHHHHHhhhhcCC
Q 044320          120 ALKYCEDETKARP-SMLEVARQLENISSMLP  149 (176)
Q Consensus       120 ~~~~~~~~p~~Rp-~~~~i~~~l~~~~~~~~  149 (176)
                      +.+|+..+|++|| +++++.+.|+......+
T Consensus       265 I~rcL~~DP~kR~ss~eeLl~~Le~~lq~~p  295 (932)
T PRK13184        265 AMKALAVDPAERYSSVQELKQDLEPHLQGSP  295 (932)
T ss_pred             HHHHccCChhhCcCHHHHHHHHHHHHHhcCc
Confidence            9999999999995 56778888887766543

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.89  E-value=4e-23  Score=152.50  Aligned_cols=130  Identities=24%  Similarity=0.288  Sum_probs=103.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC------Cccccceee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN------GVVGHVSIV   80 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~------~~~~~~~~~   80 (176)
                      ..+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||.+.........      ...+...+.
T Consensus        94 ~~~~~~~~~~i~~~i~~~l~~lh~~~---i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (264)
T cd06626          94 RILDEHVIRVYTLQLLEGLAYLHSHG---IVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYM  170 (264)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCcc
Confidence            45889999999999999999999999   999999999999999999999999998765433221      111222333


Q ss_pred             ecCC-CCCC---CCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCC
Q 044320           81 VKGT-HTQQ---LTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETK  129 (176)
Q Consensus        81 ~~~~-~~~~---~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~  129 (176)
                      +|+. ....   ++.++|+||||++++++.++..||.                           ..+.+++.+||+.+|.
T Consensus       171 ~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  250 (264)
T cd06626         171 APEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPK  250 (264)
T ss_pred             ChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHccCCcc
Confidence            3333 2333   7889999999999999988877652                           2467899999999999


Q ss_pred             CCCCHHHHHH
Q 044320          130 ARPSMLEVAR  139 (176)
Q Consensus       130 ~Rp~~~~i~~  139 (176)
                      +||++.+++.
T Consensus       251 ~R~~~~~i~~  260 (264)
T cd06626         251 KRPTASELLQ  260 (264)
T ss_pred             cCCCHHHHhc
Confidence            9999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.89  E-value=1.8e-23  Score=157.49  Aligned_cols=130  Identities=22%  Similarity=0.248  Sum_probs=105.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeec-C
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVK-G   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~-~   83 (176)
                      ..+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||.+........  ....+...+.+| .
T Consensus       110 ~~~~~~~~~~~~~~l~~~L~~LH~~~---i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  186 (297)
T cd06656         110 TCMDEGQIAAVCRECLQALDFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV  186 (297)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHH
Confidence            45788999999999999999999999   99999999999999999999999998875433221  112233333333 3


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      .....++.++|+||||+++|++.++..||.                          ..+.+++.+||..+|++||++.++
T Consensus       187 ~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i  266 (297)
T cd06656         187 VTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKEL  266 (297)
T ss_pred             HcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence            346667889999999999999987776642                          246789999999999999999998


Q ss_pred             HH
Q 044320          138 AR  139 (176)
Q Consensus       138 ~~  139 (176)
                      ++
T Consensus       267 l~  268 (297)
T cd06656         267 LQ  268 (297)
T ss_pred             hc
Confidence            87

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.89  E-value=3e-23  Score=153.29  Aligned_cols=130  Identities=24%  Similarity=0.315  Sum_probs=105.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC------Cccccceee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN------GVVGHVSIV   80 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~------~~~~~~~~~   80 (176)
                      ..+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++.........      ...+...+.
T Consensus        97 ~~~~~~~~~~~~~ql~~al~~lh~~~---i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~  173 (267)
T cd06610          97 GGLDEAIIATVLKEVLKGLEYLHSNG---QIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWM  173 (267)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhc
Confidence            46899999999999999999999999   999999999999999999999999988665433211      122333344


Q ss_pred             ecCC-CCC-CCCcccchhhHhHHHHHHhccChHH-----------------------------HHHHHHHHHhhcccCCC
Q 044320           81 VKGT-HTQ-QLTEKSDIYGLGIACLYMGLYSFEY-----------------------------LKRFMSLALKYCEDETK  129 (176)
Q Consensus        81 ~~~~-~~~-~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------------~~~l~~l~~~~~~~~p~  129 (176)
                      +++. ... .++.++|+||||+++|++.++..||                             +..+.+++.+||..+|+
T Consensus       174 ~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  253 (267)
T cd06610         174 APEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPS  253 (267)
T ss_pred             ChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhhhHHHHhcCCCCCcCCccccccccHHHHHHHHHHcCCChh
Confidence            3433 233 6788999999999999998887764                             23568999999999999


Q ss_pred             CCCCHHHHHH
Q 044320          130 ARPSMLEVAR  139 (176)
Q Consensus       130 ~Rp~~~~i~~  139 (176)
                      +||++.++++
T Consensus       254 ~Rp~~~~ll~  263 (267)
T cd06610         254 KRPTAEELLK  263 (267)
T ss_pred             hCcCHHHHhh
Confidence            9999999876

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.89  E-value=2.7e-23  Score=159.75  Aligned_cols=130  Identities=16%  Similarity=0.197  Sum_probs=104.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH-   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~-   85 (176)
                      ..+++..++.++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++........ ...+...+.+|+.. 
T Consensus       115 ~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~y~aPE~~~  190 (345)
T cd07877         115 QKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT-GYVATRWYRAPEIML  190 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChHHEEEcCCCCEEEeccccccccccccc-ccccCCCccCHHHHh
Confidence            46899999999999999999999999   99999999999999999999999999876443222 12233334444432 


Q ss_pred             C-CCCCcccchhhHhHHHHHHhccChHHH---------------------------------------------------
Q 044320           86 T-QQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------------------------------  113 (176)
Q Consensus        86 ~-~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------------------------------  113 (176)
                      + ..++.++|+||+|+++|++.++..+|.                                                   
T Consensus       191 ~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (345)
T cd07877         191 NWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFI  270 (345)
T ss_pred             CccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcC
Confidence            2 457889999999999999988765541                                                   


Q ss_pred             ---HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 ---KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 ---~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                         ..+.+++.+|+..+|.+||++.+++..
T Consensus       271 ~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  300 (345)
T cd07877         271 GANPLAVDLLEKMLVLDSDKRITAAQALAH  300 (345)
T ss_pred             CCCHHHHHHHHHHcCCChhhcCCHHHHhcC
Confidence               134678999999999999999988765

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.89  E-value=2.5e-23  Score=157.46  Aligned_cols=130  Identities=21%  Similarity=0.234  Sum_probs=102.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC----CCCeEEeecCCcccCCCCCC-----CCccccc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS----KFTPKVFDFEISRLAPVPNI-----NGVVGHV   77 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~----~~~~~l~dfg~~~~~~~~~~-----~~~~~~~   77 (176)
                      ..+++..++.++.|++.||.|||+.+   ++|+||+|+||+++.    ++.++++|||++........     ....+..
T Consensus       103 ~~~~~~~~~~i~~qi~~~l~~lH~~~---i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~  179 (316)
T cd07842         103 VSIPPSMVKSLLWQILNGVHYLHSNW---VLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTI  179 (316)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHhCC---EeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccc
Confidence            36899999999999999999999999   999999999999999    89999999999876543321     1112223


Q ss_pred             eeeecCC-C-CCCCCcccchhhHhHHHHHHhccChHHH------------------------------------------
Q 044320           78 SIVVKGT-H-TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------  113 (176)
Q Consensus        78 ~~~~~~~-~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------  113 (176)
                      .+.+|+. . ...++.++|+||||++++++.++..+|.                                          
T Consensus       180 ~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  259 (316)
T cd07842         180 WYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYD  259 (316)
T ss_pred             cccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccch
Confidence            3444443 2 3457889999999999999987654431                                          


Q ss_pred             ---------------------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 ---------------------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ---------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                                 ..+.+++.+|+..+|++||++.++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~  312 (316)
T cd07842         260 TLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALE  312 (316)
T ss_pred             hhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence                                       23667899999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.89  E-value=3e-23  Score=151.64  Aligned_cols=130  Identities=26%  Similarity=0.367  Sum_probs=106.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecC-C
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKG-T   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~-~   84 (176)
                      ..+++..+..++.|++.||.++|..+   ++|+||+|.||+++.++.++|+|||.+....... .....+...+.+|+ .
T Consensus        93 ~~~~~~~~~~i~~~i~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~  169 (253)
T cd05122          93 QTLTESQIAYVCKELLKGLEYLHSNG---IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVI  169 (253)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCC---EecCCCCHHHEEEccCCeEEEeeccccccccccccccceecCCcccCHHHH
Confidence            57899999999999999999999998   9999999999999999999999999887665433 11222333333333 3


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCCCCHHHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                      ....++.++|+||||++++++.++..++                          ...+.+++.+||..+|.+||++.+++
T Consensus       170 ~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l  249 (253)
T cd05122         170 NGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLL  249 (253)
T ss_pred             cCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcCCCCcCcccccCHHHHHHHHHHccCChhhCCCHHHHh
Confidence            3555788999999999999998876543                          34578999999999999999999887


Q ss_pred             H
Q 044320          139 R  139 (176)
Q Consensus       139 ~  139 (176)
                      +
T Consensus       250 ~  250 (253)
T cd05122         250 K  250 (253)
T ss_pred             c
Confidence            5

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=2.9e-24  Score=171.29  Aligned_cols=130  Identities=21%  Similarity=0.304  Sum_probs=110.2

Q ss_pred             CCC--CHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-CCCeEEeecCCcccCCCCC--CCCccccceeee
Q 044320            7 RSV--SLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-KFTPKVFDFEISRLAPVPN--INGVVGHVSIVV   81 (176)
Q Consensus         7 ~~l--~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~   81 (176)
                      .++  ++.++-.|-.||++||.|||...   |||||||.+|+|+.. .|.+||+|||.+++.....  .....|+..|++
T Consensus       668 GPlKDNEstm~fYtkQILeGLkYLHen~---IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMA  744 (1226)
T KOG4279|consen  668 GPLKDNESTMNFYTKQILEGLKYLHENK---IVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMA  744 (1226)
T ss_pred             CCCccchhHHHHHHHHHHHHhhhhhhcc---eeeccccCCcEEEeeccceEEecccccchhhccCCccccccccchhhhC
Confidence            455  78899999999999999999998   999999999999965 7999999999998865433  334456666666


Q ss_pred             cCCC---CCCCCcccchhhHhHHHHHHhccChHHHH--------------------------HHHHHHHhhcccCCCCCC
Q 044320           82 KGTH---TQQLTEKSDIYGLGIACLYMGLYSFEYLK--------------------------RFMSLALKYCEDETKARP  132 (176)
Q Consensus        82 ~~~~---~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~--------------------------~l~~l~~~~~~~~p~~Rp  132 (176)
                      |+..   ...|+.++|||||||...||.+|++||.+                          +.+.++++|+..+|.+||
T Consensus       745 PEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGmyKvHP~iPeelsaeak~FilrcFepd~~~R~  824 (1226)
T KOG4279|consen  745 PEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGMYKVHPPIPEELSAEAKNFILRCFEPDPCDRP  824 (1226)
T ss_pred             hHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhhcceecCCCCcHHHHHHHHHHHHHHcCCCcccCc
Confidence            6654   56789999999999999999999999843                          478899999999999999


Q ss_pred             CHHHHHH
Q 044320          133 SMLEVAR  139 (176)
Q Consensus       133 ~~~~i~~  139 (176)
                      ++.++++
T Consensus       825 sA~~LL~  831 (1226)
T KOG4279|consen  825 SAKDLLQ  831 (1226)
T ss_pred             cHHHhcc
Confidence            9998875

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.89  E-value=1.4e-23  Score=162.84  Aligned_cols=131  Identities=18%  Similarity=0.211  Sum_probs=103.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeecC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVKG   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~~   83 (176)
                      ..+++..+..++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||++........   ....|...+.+|+
T Consensus       137 ~~~~~~~~~~~~~qil~aL~~LH~~~---IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE  213 (370)
T cd05621         137 YDVPEKWAKFYTAEVVLALDAIHSMG---LIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPE  213 (370)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHH
Confidence            35889999999999999999999999   99999999999999999999999999876543221   1233555565555


Q ss_pred             CC-C----CCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCC--
Q 044320           84 TH-T----QQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETK--  129 (176)
Q Consensus        84 ~~-~----~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~--  129 (176)
                      .. .    ..++.++|+||+||++|+|.++..||.                           ..+.+++..|+..++.  
T Consensus       214 ~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~  293 (370)
T cd05621         214 VLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHKNSLNFPEDVEISKHAKNLICAFLTDREVRL  293 (370)
T ss_pred             HHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHccCchhcc
Confidence            43 2    237889999999999999998887762                           1367788888875443  


Q ss_pred             CCCCHHHHHHH
Q 044320          130 ARPSMLEVARQ  140 (176)
Q Consensus       130 ~Rp~~~~i~~~  140 (176)
                      .|+++.++++.
T Consensus       294 ~R~~~~e~l~h  304 (370)
T cd05621         294 GRNGVEEIKQH  304 (370)
T ss_pred             CCCCHHHHhcC
Confidence            37899888775

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.89  E-value=2e-23  Score=162.49  Aligned_cols=132  Identities=19%  Similarity=0.204  Sum_probs=101.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----------------   69 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----------------   69 (176)
                      ...+++..+..++.|++.||.|||+.+   |+||||||+||+++.++.++++|||+++......                
T Consensus        95 ~~~~~e~~~~~~~~qi~~aL~~LH~~g---ivHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~  171 (381)
T cd05626          95 MEVFPEVLARFYIAELTLAIESVHKMG---FIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSM  171 (381)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCcHHHEEECCCCCEEEeeCcCCccccccccccccccccccccccc
Confidence            356899999999999999999999999   9999999999999999999999999875321000                


Q ss_pred             ---------------------------------CCCccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH--
Q 044320           70 ---------------------------------INGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL--  113 (176)
Q Consensus        70 ---------------------------------~~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--  113 (176)
                                                       .....|...+.+|+. ....++.++||||+||++|||+++..||.  
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~  251 (381)
T cd05626         172 EPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAP  251 (381)
T ss_pred             CcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCC
Confidence                                             001234455555544 36678899999999999999999887762  


Q ss_pred             -------------------------HHHHHHHHh--hcccCCCCCCCHHHHHHH
Q 044320          114 -------------------------KRFMSLALK--YCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 -------------------------~~l~~l~~~--~~~~~p~~Rp~~~~i~~~  140 (176)
                                               .++.+++.+  |+..++..|+++.+++..
T Consensus       252 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~h  305 (381)
T cd05626         252 TPTETQLKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAH  305 (381)
T ss_pred             CHHHHHHHHHccccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence                                     235677776  445566679999988764

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.89  E-value=3.2e-23  Score=155.31  Aligned_cols=130  Identities=21%  Similarity=0.250  Sum_probs=104.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~~   84 (176)
                      ..+++.++..++.|++.||+|+|+.+   ++||||+|+||+++.++.++++|||.+........  ....+...+.+++.
T Consensus       110 ~~~~~~~~~~~~~ql~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~  186 (285)
T cd06648         110 TRMNEEQIATVCLAVLKALSFLHAQG---VIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEV  186 (285)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCChhhEEEcCCCcEEEcccccchhhccCCcccccccCCccccCHHH
Confidence            45889999999999999999999999   99999999999999999999999998764332211  11223334444443


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                       ....++.++|+||||+++|++.++..+|                          +..+.+++.+||..+|++||++.++
T Consensus       187 ~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i  266 (285)
T cd06648         187 ISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAEL  266 (285)
T ss_pred             hcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhhCcCHHHH
Confidence             3556788999999999999998876553                          2358899999999999999999988


Q ss_pred             HH
Q 044320          138 AR  139 (176)
Q Consensus       138 ~~  139 (176)
                      ++
T Consensus       267 l~  268 (285)
T cd06648         267 LN  268 (285)
T ss_pred             cc
Confidence            85

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.89  E-value=1e-23  Score=150.16  Aligned_cols=128  Identities=21%  Similarity=0.212  Sum_probs=107.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCCeEEeecCCcccCCCCC-CCCccccceeeecC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS---KFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKG   83 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~---~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~   83 (176)
                      .+++..+..+++||+.+|.|||.++   |||||+||+|+++.+   ...+|++|||++....... ..+..|.+.+..|+
T Consensus       106 ~ySEa~aSH~~rQiLeal~yCH~n~---IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPE  182 (355)
T KOG0033|consen  106 FYSEADASHCIQQILEALAYCHSNG---IVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAWHGFAGTPGYLSPE  182 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC---ceeccCChhheeeeeccCCCceeecccceEEEeCCccccccccCCCcccCHH
Confidence            3577888999999999999999999   999999999999943   3579999999998766333 23456777666665


Q ss_pred             CC-CCCCCcccchhhHhHHHHHHhccChHHHH---------------------------HHHHHHHhhcccCCCCCCCHH
Q 044320           84 TH-TQQLTEKSDIYGLGIACLYMGLYSFEYLK---------------------------RFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        84 ~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~---------------------------~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      .. ..+|+.++|||+-|++||-++.|..||.+                           +.++++.+|+..||.+|.|+.
T Consensus       183 vvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~  262 (355)
T KOG0033|consen  183 VLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITAD  262 (355)
T ss_pred             HhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHH
Confidence            54 77899999999999999999888888754                           378899999999999999988


Q ss_pred             HHH
Q 044320          136 EVA  138 (176)
Q Consensus       136 ~i~  138 (176)
                      +.+
T Consensus       263 EAL  265 (355)
T KOG0033|consen  263 EAL  265 (355)
T ss_pred             HHh
Confidence            664

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.89  E-value=6.6e-23  Score=155.78  Aligned_cols=135  Identities=24%  Similarity=0.352  Sum_probs=108.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT-   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~-   84 (176)
                      +..+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++.......  ...+...+.+|+. 
T Consensus       119 ~~~l~~~~~~~i~~~i~~~l~~lH~~~---i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~y~aPE~~  193 (317)
T cd06635         119 KKPLQEVEIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASIASPAN--SFVGTPYWMAPEVI  193 (317)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcccEEECCCCCEEEecCCCccccCCcc--cccCCccccChhhh
Confidence            456899999999999999999999999   9999999999999999999999999876544322  1223333444443 


Q ss_pred             ---CCCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           85 ---HTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        85 ---~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                         ....++.++|+||||+++|++.++..||                         ...+.+++.+||+.+|.+||++.+
T Consensus       194 ~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~  273 (317)
T cd06635         194 LAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEE  273 (317)
T ss_pred             hcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhccCCCCCCccccHHHHHHHHHHccCCcccCcCHHH
Confidence               2456788999999999999998877654                         224788999999999999999999


Q ss_pred             HHHHHHhhh
Q 044320          137 VARQLENIS  145 (176)
Q Consensus       137 i~~~l~~~~  145 (176)
                      +++..-.+.
T Consensus       274 il~~~~~~~  282 (317)
T cd06635         274 LLKHMFVLR  282 (317)
T ss_pred             HHhChhhhc
Confidence            998765443

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=2.4e-23  Score=157.94  Aligned_cols=132  Identities=20%  Similarity=0.173  Sum_probs=103.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-------------
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-------------   71 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-------------   71 (176)
                      ....+++..+..++.|++.||+|||+.+   ++|+||||+||+++.++.++++|||++.........             
T Consensus        96 ~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~  172 (316)
T cd05574          96 PGKCLSEEVARFYAAEVLLALEYLHLLG---IVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSS  172 (316)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHCC---eeccCCChHHeEEcCCCCEEEeecchhhccccccccccccccccccccc
Confidence            3467999999999999999999999999   999999999999999999999999987653221100             


Q ss_pred             ------------------Cccccceeeec-CCCCCCCCcccchhhHhHHHHHHhccChHH--------------------
Q 044320           72 ------------------GVVGHVSIVVK-GTHTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------  112 (176)
Q Consensus        72 ------------------~~~~~~~~~~~-~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------  112 (176)
                                        ...+...+.+| ...+..++.++|+||||+++|++.++..||                    
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~  252 (316)
T cd05574         173 VNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDETFSNILKKEVTFP  252 (316)
T ss_pred             ccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHhcCCccCC
Confidence                              01122223333 333556788999999999999998877664                    


Q ss_pred             -----HHHHHHHHHhhcccCCCCCCC----HHHHHH
Q 044320          113 -----LKRFMSLALKYCEDETKARPS----MLEVAR  139 (176)
Q Consensus       113 -----~~~l~~l~~~~~~~~p~~Rp~----~~~i~~  139 (176)
                           +..+.+++.+||..+|+.||+    +.+++.
T Consensus       253 ~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~  288 (316)
T cd05574         253 GSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQ  288 (316)
T ss_pred             CccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHc
Confidence                 245899999999999999999    666655

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=8.4e-24  Score=160.42  Aligned_cols=130  Identities=25%  Similarity=0.259  Sum_probs=110.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~~   84 (176)
                      ..+++.++.-+.+++..|+.|+|.++   .+|||||+.||++..+|.+|++|||++-......  .....|++++++|+.
T Consensus       106 ~~~~E~~i~~ilre~l~~l~ylH~~~---kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEV  182 (467)
T KOG0201|consen  106 NILDEFEIAVILREVLKGLDYLHSEK---KIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEV  182 (467)
T ss_pred             CCCccceeeeehHHHHHHhhhhhhcc---eecccccccceeEeccCcEEEEecceeeeeechhhccccccccccccchhh
Confidence            33477777788999999999999999   9999999999999999999999999986654332  245667777777666


Q ss_pred             C-CCCCCcccchhhHhHHHHHHhccChHHHH------------------------HHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           85 H-TQQLTEKSDIYGLGIACLYMGLYSFEYLK------------------------RFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        85 ~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~------------------------~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      . ...|+.++||||||+..+||..|.+|+.+                        .+++++..|+..+|+.||++.++++
T Consensus       183 I~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrvlflIpk~~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  183 IKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRVLFLIPKSAPPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             hccccccchhhhhhhhHHHHHHhcCCCCCcccCcceEEEeccCCCCCccccccCHHHHHHHHHHhhcCcccCcCHHHHhh
Confidence            5 66899999999999999999888887643                        4899999999999999999987754

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.89  E-value=4.4e-23  Score=155.30  Aligned_cols=131  Identities=19%  Similarity=0.122  Sum_probs=103.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~   82 (176)
                      ...+++.+++.++.|++.||+|||+.+   ++|+||+|+||+++.++.++++|||.+........   ....+...+.+|
T Consensus       110 ~~~~~~~~~~~i~~qi~~aL~~LH~~~---i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~P  186 (302)
T cd07864         110 LVHFSEDHIKSFMKQLLEGLNYCHKKN---FLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPP  186 (302)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCcEEeCcccccccccCCcccccccceeccCccCh
Confidence            346899999999999999999999999   99999999999999999999999999876543321   111122233333


Q ss_pred             CCC--CCCCCcccchhhHhHHHHHHhccChHH------------------------------------------------
Q 044320           83 GTH--TQQLTEKSDIYGLGIACLYMGLYSFEY------------------------------------------------  112 (176)
Q Consensus        83 ~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------------------------  112 (176)
                      +..  ...++.++|+||+|+++|++.++..+|                                                
T Consensus       187 E~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (302)
T cd07864         187 ELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLRE  266 (302)
T ss_pred             HHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhcccccccccccccccccccccchhh
Confidence            322  345688999999999999997765332                                                


Q ss_pred             -----HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 -----LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 -----~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                           +..+.+++.+||..+|.+||++.++++
T Consensus       267 ~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         267 EFSFIPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             hcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                 245788999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.89  E-value=4.5e-23  Score=151.61  Aligned_cols=131  Identities=24%  Similarity=0.322  Sum_probs=104.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-CCeEEeecCCcccCCCCCCC-Cccccc-eeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEISRLAPVPNIN-GVVGHV-SIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-~~~~l~dfg~~~~~~~~~~~-~~~~~~-~~~~~   82 (176)
                      ...+++..++.++.+++.||+|+|+++   ++|+||+|+||+++.+ +.++++|||.+......... ...+.. +.+++
T Consensus        95 ~~~~~~~~~~~~~~~i~~~l~~lh~~~---i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~aPE  171 (256)
T cd08220          95 NSLLDEDTILHFFVQILLALHHVHTKL---ILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVGTPCYISPE  171 (256)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEEccCCCceecCCCccccccccCCcccCch
Confidence            455899999999999999999999999   9999999999999865 46799999998765543221 122233 33333


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                      ......++.++|+||||+++|++.++..+|                        +..+.+++.+||..+|.+||++.+++
T Consensus       172 ~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll  251 (256)
T cd08220         172 LCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSGTFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIM  251 (256)
T ss_pred             hccCCCCCcccchHHHHHHHHHHHhCCCCcccCchHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHh
Confidence            444566788999999999999997765443                        24588999999999999999999987


Q ss_pred             H
Q 044320          139 R  139 (176)
Q Consensus       139 ~  139 (176)
                      +
T Consensus       252 ~  252 (256)
T cd08220         252 A  252 (256)
T ss_pred             h
Confidence            5

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.89  E-value=5e-23  Score=155.39  Aligned_cols=135  Identities=20%  Similarity=0.190  Sum_probs=106.3

Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC------------
Q 044320            2 TSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN------------   69 (176)
Q Consensus         2 ~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~------------   69 (176)
                      +++.++.|+++.++.|+.++..||+|||..|   ||+|||||+|||+.++|++.|+||.++.......            
T Consensus       169 qkQp~~~fse~~aRFYaAEvl~ALEYLHmlG---ivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~  245 (459)
T KOG0610|consen  169 QKQPGKRFSESAARFYAAEVLLALEYLHMLG---IVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSG  245 (459)
T ss_pred             hhCCCCccchhhHHHHHHHHHHHHHHHHhhc---eeeccCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCC
Confidence            4667888999999999999999999999999   9999999999999999999999998864311000            


Q ss_pred             ----------------------------------------------CCCccccceeeecCC-CCCCCCcccchhhHhHHH
Q 044320           70 ----------------------------------------------INGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIAC  102 (176)
Q Consensus        70 ----------------------------------------------~~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l  102 (176)
                                                                    .....|+..|.+|+. .+...+.+.|+|+||+++
T Consensus       246 ~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIfl  325 (459)
T KOG0610|consen  246 SQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFL  325 (459)
T ss_pred             CCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhhHHHHHHHH
Confidence                                                          001122222333333 256667899999999999


Q ss_pred             HHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCCC----HHHHHH
Q 044320          103 LYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARPS----MLEVAR  139 (176)
Q Consensus       103 ~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~----~~~i~~  139 (176)
                      |||+.|..||-                         ..+++||.+.+.+||.+|..    +++|.+
T Consensus       326 YEmLyG~TPFKG~~~~~Tl~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~  391 (459)
T KOG0610|consen  326 YEMLYGTTPFKGSNNKETLRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKR  391 (459)
T ss_pred             HHHHhCCCCcCCCCchhhHHHHhcCCCcCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhc
Confidence            99999888873                         35899999999999999988    666643

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.89  E-value=4.4e-23  Score=155.87  Aligned_cols=135  Identities=17%  Similarity=0.174  Sum_probs=105.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---------------   70 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---------------   70 (176)
                      ...+++..+..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||+++.......               
T Consensus        95 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  171 (305)
T cd05609          95 IGALPVDMARMYFAETVLALEYLHNYG---IVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREF  171 (305)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhc
Confidence            356899999999999999999999999   99999999999999999999999998864211100               


Q ss_pred             --CCccccceee-ecCCCCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHH
Q 044320           71 --NGVVGHVSIV-VKGTHTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLAL  121 (176)
Q Consensus        71 --~~~~~~~~~~-~~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~  121 (176)
                        ....+...+. ++......++.++|+||||+++|++.++..||.                          ..+.+++.
T Consensus       172 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  251 (305)
T cd05609         172 LDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGDEALPADAQDLIS  251 (305)
T ss_pred             cccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCccccCCHHHHHHHH
Confidence              0011222233 333345678899999999999999988765542                          34788999


Q ss_pred             hhcccCCCCCCCHHHHHHHHHh
Q 044320          122 KYCEDETKARPSMLEVARQLEN  143 (176)
Q Consensus       122 ~~~~~~p~~Rp~~~~i~~~l~~  143 (176)
                      +||+.+|++||++..+.+.|+.
T Consensus       252 ~~l~~~P~~R~~~~~~~~ll~~  273 (305)
T cd05609         252 RLLRQNPLERLGTGGAFEVKQH  273 (305)
T ss_pred             HHhccChhhccCccCHHHHHhC
Confidence            9999999999998767766664

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=2.5e-23  Score=153.55  Aligned_cols=131  Identities=19%  Similarity=0.121  Sum_probs=103.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCcccccee-eecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSI-VVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~-~~~~~   84 (176)
                      ...+++..+..++.|++.||.|+|+.+   ++|+||+|.||+++.++.++++|||++.......  ...+...+ +++..
T Consensus        91 ~~~~~~~~~~~i~~qi~~aL~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~y~~pe~~  165 (260)
T cd05611          91 LGGLPEDWAKQYIAEVVLGVEDLHQRG---IIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENK--KFVGTPDYLAPETI  165 (260)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCcEEEeecccceeccccc--cCCCCcCccChhhh
Confidence            356899999999999999999999999   9999999999999999999999999887543321  11222223 33333


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      ....++.++|+||+|+++|++.++..||                           +..+.+++.+||..+|++||++..+
T Consensus       166 ~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~  245 (260)
T cd05611         166 LGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGY  245 (260)
T ss_pred             cCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCCcH
Confidence            4555788999999999999998776554                           2357889999999999999977555


Q ss_pred             HHHH
Q 044320          138 ARQL  141 (176)
Q Consensus       138 ~~~l  141 (176)
                      .+.|
T Consensus       246 ~~~l  249 (260)
T cd05611         246 QEIK  249 (260)
T ss_pred             HHHH
Confidence            4443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.89  E-value=4.2e-23  Score=152.77  Aligned_cols=130  Identities=20%  Similarity=0.290  Sum_probs=104.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC--------CCCCccccce
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP--------NINGVVGHVS   78 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~--------~~~~~~~~~~   78 (176)
                      ..+++..+..++.|++.||+|+|+.+   ++|+||+|+||+++.++.++++|||.+......        ......+...
T Consensus        97 ~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (265)
T cd06631          97 GPLPEPVFCKYTKQILDGVAYLHNNC---VVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPY  173 (265)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcCHHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCcc
Confidence            46889999999999999999999999   999999999999999999999999987653211        1111223333


Q ss_pred             eeecC-CCCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCC
Q 044320           79 IVVKG-THTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        79 ~~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                      +.+++ .....++.++|+||+|+++|++.++..||.                          ..+.+++.+||..+|.+|
T Consensus       174 ~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  253 (265)
T cd06631         174 WMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHER  253 (265)
T ss_pred             ccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccC
Confidence            44444 345667889999999999999988877652                          247789999999999999


Q ss_pred             CCHHHHHH
Q 044320          132 PSMLEVAR  139 (176)
Q Consensus       132 p~~~~i~~  139 (176)
                      |++.++++
T Consensus       254 p~~~~~l~  261 (265)
T cd06631         254 PSALQLLR  261 (265)
T ss_pred             CCHHHHhc
Confidence            99998865

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.89  E-value=4.2e-23  Score=154.39  Aligned_cols=134  Identities=23%  Similarity=0.342  Sum_probs=106.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKG-   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~-   83 (176)
                      ...+++..+..++.+++.||.|||+ .+   ++|+||+|+||+++.++.++++|||++............+...+.+++ 
T Consensus        97 ~~~~~~~~~~~~~~~i~~~l~~LH~~~~---i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~~~~~~~~~~~aPE~  173 (284)
T cd06620          97 GGPIPVEILGKIAVAVVEGLTYLYNVHR---IMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGTSTYMSPER  173 (284)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHhcC---eeccCCCHHHEEECCCCcEEEccCCcccchhhhccCccccCcccCCHHH
Confidence            3468999999999999999999996 57   999999999999999999999999987654332222223333343443 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHHH------------------------------------HHHHHHHHhhcccC
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------KRFMSLALKYCEDE  127 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------~~l~~l~~~~~~~~  127 (176)
                      .....++.++|+|||||++|++.++..||.                                    ..+.+++.+||..+
T Consensus       174 ~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  253 (284)
T cd06620         174 IQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKD  253 (284)
T ss_pred             HccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCCCchhcCHHHHHHHHHHhcCC
Confidence            345678889999999999999987666542                                    24678999999999


Q ss_pred             CCCCCCHHHHHHHHH
Q 044320          128 TKARPSMLEVARQLE  142 (176)
Q Consensus       128 p~~Rp~~~~i~~~l~  142 (176)
                      |.+||++.++++...
T Consensus       254 p~~Rpt~~e~~~~~~  268 (284)
T cd06620         254 PTERPTPQQLCAMPP  268 (284)
T ss_pred             cccCcCHHHHhcCcc
Confidence            999999999987643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.89  E-value=5.9e-23  Score=154.09  Aligned_cols=129  Identities=18%  Similarity=0.149  Sum_probs=104.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceee-ecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIV-VKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~-~~~~   84 (176)
                      ...+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++........ ...+...+. ++..
T Consensus        95 ~~~l~~~~~~~~~~qil~~l~~lH~~~---i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~y~aPE~~  170 (290)
T cd05580          95 SGRFPEPVARFYAAQVVLALEYLHSLD---IVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTY-TLCGTPEYLAPEII  170 (290)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEECCCCCEEEeeCCCccccCCCCC-CCCCCccccChhhh
Confidence            357899999999999999999999999   99999999999999999999999999877654422 222333333 3333


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCC-----CHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARP-----SMLE  136 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp-----~~~~  136 (176)
                      .....+.++|+||||+++|++.++..+|                       ...+.+++.+||..+|.+|+     ++.+
T Consensus       171 ~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~  250 (290)
T cd05580         171 LSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEGKVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVND  250 (290)
T ss_pred             cCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCccCCccCCHHHHHHHHHHccCCHHHccCcccCCHHH
Confidence            4566788999999999999998877664                       13578899999999999998     5666


Q ss_pred             HH
Q 044320          137 VA  138 (176)
Q Consensus       137 i~  138 (176)
                      ++
T Consensus       251 l~  252 (290)
T cd05580         251 IK  252 (290)
T ss_pred             HH
Confidence            54

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.89  E-value=8.1e-23  Score=150.15  Aligned_cols=132  Identities=21%  Similarity=0.266  Sum_probs=106.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceee-ecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIV-VKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~-~~~~   84 (176)
                      +..+++..++.++.|++.||+|+|+.+   ++|+||+|.||+++.++.++++|||.+............+...+. ++..
T Consensus        97 ~~~~~~~~~~~~~~~l~~al~~lh~~~---i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~Pe~~  173 (256)
T cd08530          97 RKLIPEQEIWRIFIQLLRGLQALHEQK---ILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVW  173 (256)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCcceEEEecCCcEEEeeccchhhhccCCcccccCCccccCHHHH
Confidence            456899999999999999999999999   999999999999999999999999998765543222222333333 3333


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                      ....++.++|+||+|+++|++.++..||                        ...+.+++.+|+..+|++||++.++++.
T Consensus       174 ~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  253 (256)
T cd08530         174 KGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYPPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILAS  253 (256)
T ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            4666788999999999999998776553                        2358899999999999999999998753

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.89  E-value=3.1e-23  Score=173.91  Aligned_cols=134  Identities=22%  Similarity=0.272  Sum_probs=106.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCC----CCeEecCCCCCCeEeCC-----------------CCCeEEeecCCccc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEAD----PPIIHWDIKATNTLLDS-----------------KFTPKVFDFEISRL   64 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~----~~~vH~dl~~~nil~~~-----------------~~~~~l~dfg~~~~   64 (176)
                      ...+++..++.|+.||+.||.|||..+.    ..|+|+||||+|||++.                 .+.++|+|||++..
T Consensus       112 ~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~  191 (1021)
T PTZ00266        112 FGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKN  191 (1021)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCcccc
Confidence            3569999999999999999999998431    23999999999999954                 23589999999876


Q ss_pred             CCCCCC-CCccccceeeecCCC---CCCCCcccchhhHhHHHHHHhccChHHH------------------------HHH
Q 044320           65 APVPNI-NGVVGHVSIVVKGTH---TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------KRF  116 (176)
Q Consensus        65 ~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------~~l  116 (176)
                      ...... ....+...+.+|+..   ...++.++|||||||++|+|+++..||.                        ..+
T Consensus       192 l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~qli~~lk~~p~lpi~~~S~eL  271 (1021)
T PTZ00266        192 IGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQLISELKRGPDLPIKGKSKEL  271 (1021)
T ss_pred             ccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHHHHHHHHhcCCCCCcCCCCHHH
Confidence            543322 223455555555543   3457889999999999999999887762                        248


Q ss_pred             HHHHHhhcccCCCCCCCHHHHHH
Q 044320          117 MSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       117 ~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      .+++..||..+|.+||++.+++.
T Consensus       272 ~dLI~~~L~~dPeeRPSa~QlL~  294 (1021)
T PTZ00266        272 NILIKNLLNLSAKERPSALQCLG  294 (1021)
T ss_pred             HHHHHHHhcCChhHCcCHHHHhc
Confidence            88999999999999999999984

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.89  E-value=2.1e-23  Score=161.60  Aligned_cols=125  Identities=19%  Similarity=0.167  Sum_probs=99.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC-----------------
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV-----------------   67 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~-----------------   67 (176)
                      +...|++..+..|+.+++.||.-+|+.|   +|||||||+|+|+|..|++||+|||++.....                 
T Consensus       234 ~~~~L~e~~arfYiaE~vlAI~~iH~~g---yIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~  310 (550)
T KOG0605|consen  234 RKDTLTEDWARFYIAETVLAIESIHQLG---YIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINL  310 (550)
T ss_pred             hcCcCchHHHHHHHHHHHHHHHHHHHcC---cccccCChhheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhh
Confidence            3567999999999999999999999999   99999999999999999999999999843110                 


Q ss_pred             --------C-----C-------------------CCCccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHHH
Q 044320           68 --------P-----N-------------------INGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYLK  114 (176)
Q Consensus        68 --------~-----~-------------------~~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~  114 (176)
                              +     .                   ...+.|++.|.+|+. .+..|+..+|+||+||++|||+.|.+||..
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s  390 (550)
T KOG0605|consen  311 SEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCS  390 (550)
T ss_pred             ccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCC
Confidence                    0     0                   012345554555544 477899999999999999999999999843


Q ss_pred             ---------------------------HHHHHHHhhcccCCCCCCC
Q 044320          115 ---------------------------RFMSLALKYCEDETKARPS  133 (176)
Q Consensus       115 ---------------------------~l~~l~~~~~~~~p~~Rp~  133 (176)
                                                 +..++|.+|+- ||++|..
T Consensus       391 ~tp~~T~rkI~nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RLG  435 (550)
T KOG0605|consen  391 ETPQETYRKIVNWRETLKFPEEVDLSDEAKDLITRLLC-DPENRLG  435 (550)
T ss_pred             CCHHHHHHHHHHHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhcC
Confidence                                       35667777666 7777744

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.89  E-value=3.6e-23  Score=160.52  Aligned_cols=131  Identities=18%  Similarity=0.200  Sum_probs=102.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeecC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVKG   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~~   83 (176)
                      ..+++..+..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++........   ....|...+.+|+
T Consensus       137 ~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE  213 (371)
T cd05622         137 YDVPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPE  213 (371)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---EEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHH
Confidence            35889999999999999999999999   99999999999999999999999999876543221   1233555565555


Q ss_pred             CCC-----CCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCC-
Q 044320           84 THT-----QQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKA-  130 (176)
Q Consensus        84 ~~~-----~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~-  130 (176)
                      ...     ..++.++|+||+||++|+|.++..||.                           ..+.+++.+|+..++.. 
T Consensus       214 ~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~~~r~  293 (371)
T cd05622         214 VLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRL  293 (371)
T ss_pred             HHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCcccCCCcCCCCHHHHHHHHHHcCChhhhc
Confidence            432     237889999999999999988877652                           23677888888743332 


Q ss_pred             -CCCHHHHHHH
Q 044320          131 -RPSMLEVARQ  140 (176)
Q Consensus       131 -Rp~~~~i~~~  140 (176)
                       |+++.++++.
T Consensus       294 ~r~~~~ei~~h  304 (371)
T cd05622         294 GRNGVEEIKRH  304 (371)
T ss_pred             CCCCHHHHhcC
Confidence             6788888774

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.89  E-value=8.1e-23  Score=154.71  Aligned_cols=132  Identities=22%  Similarity=0.314  Sum_probs=105.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      +..+++.++..++.|++.|+.|+|+.+   ++|+||+|+||+++.++.++++|||++.......  ...+...+.+|+..
T Consensus       109 ~~~l~~~~~~~~~~~l~~~l~~LH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~y~aPE~~  183 (308)
T cd06634         109 KKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPAN--XFVGTPYWMAPEVI  183 (308)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHhEEECCCCcEEECCcccceeecCcc--cccCCccccCHHHH
Confidence            456899999999999999999999998   9999999999999999999999999887644322  11223334444332


Q ss_pred             ----CCCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           86 ----TQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        86 ----~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                          ...++.++||||||+++|++.++..|+.                         ..+.+++.+||..+|++||++.+
T Consensus       184 ~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~  263 (308)
T cd06634         184 LAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEV  263 (308)
T ss_pred             hhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHHHHHHHhhcCCCCcCcccccHHHHHHHHHHhhCCcccCCCHHH
Confidence                3457889999999999999987776541                         24778999999999999999999


Q ss_pred             HHHHHH
Q 044320          137 VARQLE  142 (176)
Q Consensus       137 i~~~l~  142 (176)
                      +++...
T Consensus       264 ll~~~~  269 (308)
T cd06634         264 LLKHRF  269 (308)
T ss_pred             HhhCcc
Confidence            887644

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.89  E-value=6e-23  Score=151.46  Aligned_cols=131  Identities=29%  Similarity=0.405  Sum_probs=106.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--Cccccceee-ec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIV-VK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~-~~   82 (176)
                      ..+++..++.++.|++.|+.|+|+ .+   ++|+||+|+||+++.++.++++|||.+.........  ...+...+. ++
T Consensus        94 ~~l~~~~~~~~~~~l~~~l~~lh~~~~---~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE  170 (264)
T cd06623          94 GKIPEPVLAYIARQILKGLDYLHTKRH---IIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPE  170 (264)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhccCC---CccCCCCHHHEEECCCCCEEEccCccceecccCCCcccceeecccccCHh
Confidence            568999999999999999999999 98   999999999999999999999999988765433322  122233333 33


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhccChHH----------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      ......++.++|+||||+++|++.++..|+                            +..+.+++.+||..+|.+||++
T Consensus       171 ~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~  250 (264)
T cd06623         171 RIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKKRPSA  250 (264)
T ss_pred             hhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHccCChhhCCCH
Confidence            334567788999999999999998876553                            3358899999999999999999


Q ss_pred             HHHHHH
Q 044320          135 LEVARQ  140 (176)
Q Consensus       135 ~~i~~~  140 (176)
                      .++++.
T Consensus       251 ~~ll~~  256 (264)
T cd06623         251 AELLQH  256 (264)
T ss_pred             HHHHhC
Confidence            998874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.89  E-value=8.5e-23  Score=154.97  Aligned_cols=130  Identities=25%  Similarity=0.362  Sum_probs=105.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      +..+++.+++.++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||.+.......  ...+...+.+|+..
T Consensus       115 ~~~l~~~~~~~~~~qi~~al~~LH~~g---i~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~~--~~~~~~~y~aPE~~  189 (313)
T cd06633         115 KKPLQEVEIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASKSSPAN--SFVGTPYWMAPEVI  189 (313)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCChhhEEECCCCCEEEeecCCCcccCCCC--CccccccccChhhc
Confidence            456899999999999999999999999   9999999999999999999999999876533221  22333444444432


Q ss_pred             ----CCCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           86 ----TQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        86 ----~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                          ...++.++|+||||+++|++.++..|+.                         ..+.+++.+||+.+|.+||++.+
T Consensus       190 ~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~  269 (313)
T cd06633         190 LAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQERPASAE  269 (313)
T ss_pred             cccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHH
Confidence                3567889999999999999987776542                         24788999999999999999998


Q ss_pred             HHHH
Q 044320          137 VARQ  140 (176)
Q Consensus       137 i~~~  140 (176)
                      ++..
T Consensus       270 ~l~~  273 (313)
T cd06633         270 LLRH  273 (313)
T ss_pred             HhcC
Confidence            8754

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=8.3e-23  Score=152.08  Aligned_cols=130  Identities=24%  Similarity=0.279  Sum_probs=105.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~~   84 (176)
                      ..+++..++.++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||.+........  ....+...+.+++.
T Consensus        96 ~~l~~~~~~~i~~~i~~~l~~lh~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  172 (277)
T cd06917          96 GPIAEKYISVIIREVLVALKYIHKVG---VIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEV  172 (277)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcCHHHEEEcCCCCEEEccCCceeecCCCccccccccCCcceeCHHH
Confidence            36899999999999999999999999   99999999999999999999999998876544321  11223333444443


Q ss_pred             C--CCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           85 H--TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        85 ~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      .  +..++.++|+||||+++|++.++..||                         +..+.+++.+||..+|++||++.++
T Consensus       173 ~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~i  252 (277)
T cd06917         173 ITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSKPPRLEDNGYSKLLREFVAACLDEEPKERLSAEEL  252 (277)
T ss_pred             hccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhhhhhccccCCCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence            2  345688999999999999998777664                         2358889999999999999999998


Q ss_pred             HH
Q 044320          138 AR  139 (176)
Q Consensus       138 ~~  139 (176)
                      +.
T Consensus       253 l~  254 (277)
T cd06917         253 LK  254 (277)
T ss_pred             hh
Confidence            76

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.89  E-value=3.4e-23  Score=161.13  Aligned_cols=130  Identities=19%  Similarity=0.211  Sum_probs=99.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----------------   69 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----------------   69 (176)
                      ...+++..+..++.|++.||+|||+.+   |+||||||+||+++.++.++|+|||++.......                
T Consensus        95 ~~~~~e~~~~~~~~qi~~al~~lH~~~---ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~  171 (382)
T cd05625          95 MGIFPEDLARFYIAELTCAVESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSM  171 (382)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEEeECCCCccccccccccccccccccccccc
Confidence            346899999999999999999999999   9999999999999999999999999874321000                


Q ss_pred             ---------------------------------CCCccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH--
Q 044320           70 ---------------------------------INGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL--  113 (176)
Q Consensus        70 ---------------------------------~~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--  113 (176)
                                                       .....|...+.+|+. ....++.++||||+||++|||.++..||.  
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~  251 (382)
T cd05625         172 DFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQ  251 (382)
T ss_pred             cccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCC
Confidence                                             001234444555544 46778999999999999999998887763  


Q ss_pred             -------------------------HHHHHHHHhhcccCCCCCCC---HHHHHH
Q 044320          114 -------------------------KRFMSLALKYCEDETKARPS---MLEVAR  139 (176)
Q Consensus       114 -------------------------~~l~~l~~~~~~~~p~~Rp~---~~~i~~  139 (176)
                                               ....+++.+++ .+|++|++   +.++++
T Consensus       252 ~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~  304 (382)
T cd05625         252 TPLETQMKVINWQTSLHIPPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKA  304 (382)
T ss_pred             CHHHHHHHHHccCCCcCCCCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhc
Confidence                                     23556777765 48999987   776654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.89  E-value=5.9e-23  Score=157.04  Aligned_cols=131  Identities=17%  Similarity=0.145  Sum_probs=103.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----------------   69 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----------------   69 (176)
                      +..+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||.+.....+.                
T Consensus       113 ~~~~~~~~~~~~~~ql~~aL~~LH~~~---i~H~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  189 (335)
T PTZ00024        113 KIRLTESQVKCILLQILNGLNVLHKWY---FMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREE  189 (335)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccccHHHeEECCCCCEEECCccceeeccccccccccccccccccccc
Confidence            346899999999999999999999999   9999999999999999999999999887654111                


Q ss_pred             CCCccccceeeecCCC--CCCCCcccchhhHhHHHHHHhccChHH-----------------------------------
Q 044320           70 INGVVGHVSIVVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------------------  112 (176)
Q Consensus        70 ~~~~~~~~~~~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------------------  112 (176)
                      .....+...+.+|+..  ...++.++|+||+|+++|++.++..+|                                   
T Consensus       190 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  269 (335)
T PTZ00024        190 MTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTE  269 (335)
T ss_pred             ccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCchhhCcchhhcccccc
Confidence            0011122233344433  234688999999999999998776543                                   


Q ss_pred             ----------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ----------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ----------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                      ...+.+++.+|+..+|++||++++++.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  312 (335)
T PTZ00024        270 FTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALK  312 (335)
T ss_pred             cCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhc
Confidence                            234678999999999999999998886

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=2.9e-23  Score=161.27  Aligned_cols=131  Identities=18%  Similarity=0.131  Sum_probs=100.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-------------C--
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-------------I--   70 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-------------~--   70 (176)
                      ...+++..+..++.|++.||+|||+.+   ++||||||+||+++.++.++++|||+++......             .  
T Consensus        95 ~~~~~~~~~~~~~~ql~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~  171 (377)
T cd05629          95 YDTFSEDVTRFYMAECVLAIEAVHKLG---FIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKN  171 (377)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEECCCCCEEEeeccccccccccccccccccccccccccc
Confidence            456899999999999999999999999   9999999999999999999999999985321100             0  


Q ss_pred             ----------------------------------CCccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH--
Q 044320           71 ----------------------------------NGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL--  113 (176)
Q Consensus        71 ----------------------------------~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--  113 (176)
                                                        ....|...+.+|+. ....++.++|+||+||++|||.++..||.  
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~  251 (377)
T cd05629         172 RIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSE  251 (377)
T ss_pred             ccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCC
Confidence                                              01224444544443 46678999999999999999999877652  


Q ss_pred             -------------------------HHHHHHHHhhcccCCCCC---CCHHHHHHH
Q 044320          114 -------------------------KRFMSLALKYCEDETKAR---PSMLEVARQ  140 (176)
Q Consensus       114 -------------------------~~l~~l~~~~~~~~p~~R---p~~~~i~~~  140 (176)
                                               ..+.+++.+|+. +|.+|   +++.+++..
T Consensus       252 ~~~~~~~~i~~~~~~~~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~h  305 (377)
T cd05629         252 NSHETYRKIINWRETLYFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSH  305 (377)
T ss_pred             CHHHHHHHHHccCCccCCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcC
Confidence                                     135677888886 66654   588877664

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=3.4e-23  Score=162.66  Aligned_cols=130  Identities=26%  Similarity=0.364  Sum_probs=111.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT   84 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~   84 (176)
                      .++++.+-++-.|..+.+.||+|||+++   .||||||..|||+++.|.||+.|||.+.....-  +.+.|++++++|+.
T Consensus       119 hkKplqEvEIAAi~~gaL~gLaYLHS~~---~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PA--nsFvGTPywMAPEV  193 (948)
T KOG0577|consen  119 HKKPLQEVEIAAITHGALQGLAYLHSHN---RIHRDIKAGNILLSEPGLVKLADFGSASIMAPA--NSFVGTPYWMAPEV  193 (948)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHHHHhh---HHhhhccccceEecCCCeeeeccccchhhcCch--hcccCCccccchhH
Confidence            3577889999999999999999999999   999999999999999999999999998775533  34667788877765


Q ss_pred             C----CCCCCcccchhhHhHHHHHHhcc-------------------------ChHHHHHHHHHHHhhcccCCCCCCCHH
Q 044320           85 H----TQQLTEKSDIYGLGIACLYMGLY-------------------------SFEYLKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        85 ~----~~~~~~~~Dv~s~G~~l~~l~~~-------------------------~~~~~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      .    .+.|+-++||||+|+.+.|+...                         ...|.+.+++++..|++.-|..|||.+
T Consensus       194 ILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNesPtLqs~eWS~~F~~Fvd~CLqKipqeRptse  273 (948)
T KOG0577|consen  194 ILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQERPTSE  273 (948)
T ss_pred             heeccccccCCccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhhCcccCCcHH
Confidence            4    78999999999999999988333                         344567799999999999999999988


Q ss_pred             HHHH
Q 044320          136 EVAR  139 (176)
Q Consensus       136 ~i~~  139 (176)
                      +++.
T Consensus       274 ~ll~  277 (948)
T KOG0577|consen  274 ELLK  277 (948)
T ss_pred             HHhh
Confidence            7653

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.89  E-value=7.2e-23  Score=153.77  Aligned_cols=130  Identities=18%  Similarity=0.177  Sum_probs=100.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-CCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-KFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ..+++..+..++.|++.||+|||+.+   ++|+||+|+||+++. ++.++++|||++.......  .....+...+.+|+
T Consensus        97 ~~~~~~~~~~~~~qi~~aL~~LH~~~---i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE  173 (294)
T PLN00009         97 FAKNPRLIKTYLYQILRGIAYCHSHR---VLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPE  173 (294)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCcceEEEECCCCEEEEcccccccccCCCccccccCceeecccCHH
Confidence            34688889999999999999999999   999999999999985 5678999999986543321  11112233344443


Q ss_pred             C-C-CCCCCcccchhhHhHHHHHHhccChHH-------------------------------------------------
Q 044320           84 T-H-TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------------  112 (176)
Q Consensus        84 ~-~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------------  112 (176)
                      . . ...++.++|+||+|+++|++.++..+|                                                 
T Consensus       174 ~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (294)
T PLN00009        174 ILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVV  253 (294)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhC
Confidence            2 2 345788999999999999998887554                                                 


Q ss_pred             ---HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ---LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ---~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                         ...+.+++.+|+..+|++||++.++++
T Consensus       254 ~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~  283 (294)
T PLN00009        254 PTLEPAGVDLLSKMLRLDPSKRITARAALE  283 (294)
T ss_pred             cCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence               133567999999999999999999876

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.89  E-value=1.6e-22  Score=150.68  Aligned_cols=130  Identities=21%  Similarity=0.194  Sum_probs=103.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--CccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~~~   84 (176)
                      ..+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||.+.........  ...+...+.+|+.
T Consensus        93 ~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~  169 (282)
T cd07829          93 GPLSPNLIKSIMYQLLRGLAYCHSHR---ILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEI  169 (282)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChheEEEcCCCCEEEecCCcccccCCCccccCccccCcCcCChHH
Confidence            46899999999999999999999999   999999999999999999999999998765433211  1112223333332


Q ss_pred             -CCC-CCCcccchhhHhHHHHHHhccChHH--------------------------------------------------
Q 044320           85 -HTQ-QLTEKSDIYGLGIACLYMGLYSFEY--------------------------------------------------  112 (176)
Q Consensus        85 -~~~-~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------------------------------  112 (176)
                       ... .++.++|+||||+++|++.++..+|                                                  
T Consensus       170 ~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (282)
T cd07829         170 LLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLP  249 (282)
T ss_pred             hcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcc
Confidence             233 6788999999999999998875443                                                  


Q ss_pred             --HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 --LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 --~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                        ...+.+++.+||..+|++||++.+++.
T Consensus       250 ~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         250 RLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             cccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence              235788999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.89  E-value=9.4e-23  Score=155.75  Aligned_cols=130  Identities=20%  Similarity=0.230  Sum_probs=103.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC-C
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT-H   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~-~   85 (176)
                      ..++...+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||.+........ ...+...+.+|+. .
T Consensus       103 ~~~~~~~~~~~~~ql~~aL~~LH~~~---iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~y~aPE~~~  178 (328)
T cd07856         103 RPLEKQFIQYFLYQILRGLKYVHSAG---VVHRDLKPSNILINENCDLKICDFGLARIQDPQMT-GYVSTRYYRAPEIML  178 (328)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEeECCCCCEEeCccccccccCCCcC-CCcccccccCceeee
Confidence            46788889999999999999999999   99999999999999999999999999875443222 1222333344443 2


Q ss_pred             C-CCCCcccchhhHhHHHHHHhccChHH----------------------------------------------------
Q 044320           86 T-QQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------------------------  112 (176)
Q Consensus        86 ~-~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------------------------  112 (176)
                      + ..++.++|+||||+++|++.++..+|                                                    
T Consensus       179 ~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (328)
T cd07856         179 TWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFK  258 (328)
T ss_pred             ccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcC
Confidence            2 46788999999999999998876443                                                    


Q ss_pred             --HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 --LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 --~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                        ...+.+++.+|+..+|++||++.+++..
T Consensus       259 ~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         259 NADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             CCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence              1357889999999999999999988665

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.89  E-value=8.9e-23  Score=152.33  Aligned_cols=130  Identities=17%  Similarity=0.179  Sum_probs=103.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~~   84 (176)
                      ..+++..+..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||.+........  ....+...+.+++.
T Consensus        95 ~~~~~~~~~~~~~qi~~~l~~lH~~~---i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~  171 (284)
T cd07836          95 GALDPNTVKSFTYQLLKGIAFCHENR---VLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDV  171 (284)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEECCCCcEEEeecchhhhhcCCccccccccccccccChHH
Confidence            56899999999999999999999999   99999999999999999999999998865433211  11222333444443


Q ss_pred             C--CCCCCcccchhhHhHHHHHHhccChHH--------------------------------------------------
Q 044320           85 H--TQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------------------------------  112 (176)
Q Consensus        85 ~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------------------------------  112 (176)
                      .  ...++.++|+||+|+++|++.++..+|                                                  
T Consensus       172 ~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (284)
T cd07836         172 LLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFP  251 (284)
T ss_pred             hcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhh
Confidence            2  345688999999999999998877543                                                  


Q ss_pred             --HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 --LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 --~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                        +..+.+++.+|++.+|.+||++.++++
T Consensus       252 ~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         252 HADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             hcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence              124568899999999999999998875

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.89  E-value=1.1e-22  Score=155.22  Aligned_cols=130  Identities=20%  Similarity=0.213  Sum_probs=98.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---------CCccccc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---------NGVVGHV   77 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---------~~~~~~~   77 (176)
                      ..+++..+..++.|++.||+|||+.+   ++||||||+||+++.++.++++||+..........         ....+..
T Consensus        96 ~~~~~~~~~~~~~qi~~aL~~lH~~~---ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (328)
T cd08226          96 EGMSEALIGNILFGALRGLNYLHQNG---YIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVL  172 (328)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccccccccccccCcc
Confidence            45899999999999999999999999   99999999999999999999999875432211100         0011112


Q ss_pred             eeeecCCC-C--CCCCcccchhhHhHHHHHHhccChHH------------------------------------------
Q 044320           78 SIVVKGTH-T--QQLTEKSDIYGLGIACLYMGLYSFEY------------------------------------------  112 (176)
Q Consensus        78 ~~~~~~~~-~--~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------------------  112 (176)
                      .+.+|+.. .  ..++.++|+||+||++|++.++..||                                          
T Consensus       173 ~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (328)
T cd08226         173 PWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDS  252 (328)
T ss_pred             CccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhhc
Confidence            23333332 2  34688999999999999997766554                                          


Q ss_pred             ----------------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ----------------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ----------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                                  ...+.+++.+||..+|++|||+.++++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~  307 (328)
T cd08226         253 GIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLS  307 (328)
T ss_pred             ccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhh
Confidence                                        234678999999999999999999964

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.88  E-value=1.1e-22  Score=149.69  Aligned_cols=130  Identities=22%  Similarity=0.252  Sum_probs=104.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecC-C
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKG-T   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~-~   84 (176)
                      ..+++..+..++.|++.||+|+|+.+   ++|+||+|+||+++.++.++++|||.+....... .....+...+.+++ .
T Consensus        97 ~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~pe~~  173 (258)
T cd06632          97 GSFPEPVIRLYTRQILLGLEYLHDRN---TVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVI  173 (258)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEccCccceeccccccccccCCCcceeCHHHh
Confidence            45899999999999999999999999   9999999999999999999999999887644332 11222333343333 3


Q ss_pred             CCCC-CCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCCCHHHHH
Q 044320           85 HTQQ-LTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        85 ~~~~-~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                      .... ++.++|+||||+++|++.++..||.                         ..+.+++.+||..+|.+||++.+++
T Consensus       174 ~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l  253 (258)
T cd06632         174 AQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSKELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELL  253 (258)
T ss_pred             cCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHHHHHHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHh
Confidence            3333 7889999999999999988776641                         2477899999999999999999887


Q ss_pred             H
Q 044320          139 R  139 (176)
Q Consensus       139 ~  139 (176)
                      .
T Consensus       254 ~  254 (258)
T cd06632         254 E  254 (258)
T ss_pred             c
Confidence            5

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.88  E-value=2.4e-23  Score=161.67  Aligned_cols=131  Identities=20%  Similarity=0.206  Sum_probs=100.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC-----------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP-----------------   68 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~-----------------   68 (176)
                      ...+++..+..++.|++.||+|||+.+   |+||||||+||+++.++.++|+|||++......                 
T Consensus        95 ~~~~~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~  171 (376)
T cd05598          95 LGIFEEDLARFYIAELTCAIESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSM  171 (376)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHEEECCCCCEEEEeCCCCccccccccccccccccccccccc
Confidence            356889999999999999999999999   999999999999999999999999987422100                 


Q ss_pred             ----------------------------CCCCccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH------
Q 044320           69 ----------------------------NINGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL------  113 (176)
Q Consensus        69 ----------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------  113 (176)
                                                  ......|...+.+|+. ....++.++||||+||++|+|.++..||.      
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~  251 (376)
T cd05598         172 EPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAE  251 (376)
T ss_pred             cccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCHHH
Confidence                                        0001234444554443 46678899999999999999988877763      


Q ss_pred             ---------------------HHHHHHHHhhcccCCCCCC---CHHHHHHH
Q 044320          114 ---------------------KRFMSLALKYCEDETKARP---SMLEVARQ  140 (176)
Q Consensus       114 ---------------------~~l~~l~~~~~~~~p~~Rp---~~~~i~~~  140 (176)
                                           ..+.+++.+++ .+|.+|+   ++.++++.
T Consensus       252 ~~~~i~~~~~~~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h  301 (376)
T cd05598         252 TQLKVINWETTLHIPSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKAH  301 (376)
T ss_pred             HHHHHhccCccccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCC
Confidence                                 13566777765 4899998   77877654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.88  E-value=2.6e-23  Score=160.60  Aligned_cols=130  Identities=21%  Similarity=0.260  Sum_probs=99.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----------------   69 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----------------   69 (176)
                      +..+++..+..++.|++.||.|||+.+   ++||||||+||+++.++.++++|||++.......                
T Consensus        95 ~~~l~~~~~~~~~~qi~~~L~~lH~~g---ivHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~  171 (360)
T cd05627          95 KDTLSEEATQFYIAETVLAIDAIHQLG---FIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDF  171 (360)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEccCCCHHHEEECCCCCEEEeeccCCcccccccccccccccccCCcccc
Confidence            456899999999999999999999999   9999999999999999999999999876432110                


Q ss_pred             ---------------------CCCccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH--------------
Q 044320           70 ---------------------INGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------  113 (176)
Q Consensus        70 ---------------------~~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------  113 (176)
                                           .....|...+.+|+. .+..++.++|+||+||++|+|.++..||.              
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~~~~~~~i~~~  251 (360)
T cd05627         172 SFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYRKVMNW  251 (360)
T ss_pred             cccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCCHHHHHHHHHcC
Confidence                                 011234444554443 46778899999999999999988877652              


Q ss_pred             -------------HHHHHHHHhhcccCCCCCCC---HHHHHH
Q 044320          114 -------------KRFMSLALKYCEDETKARPS---MLEVAR  139 (176)
Q Consensus       114 -------------~~l~~l~~~~~~~~p~~Rp~---~~~i~~  139 (176)
                                   ..+.+++.+++ .+|++|++   +.++++
T Consensus       252 ~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~  292 (360)
T cd05627         252 KETLVFPPEVPISEKAKDLILRFC-TDSENRIGSNGVEEIKS  292 (360)
T ss_pred             CCceecCCCCCCCHHHHHHHHHhc-cChhhcCCCCCHHHHhc
Confidence                         23566777765 48888875   455544

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.88  E-value=1.7e-22  Score=150.03  Aligned_cols=131  Identities=24%  Similarity=0.261  Sum_probs=104.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~~   82 (176)
                      ..+++..+..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++.......    .....+...+.+|
T Consensus       103 ~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~P  179 (272)
T cd06629         103 GRFEEQLVRFFTEQVLEGLAYLHSKG---ILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAP  179 (272)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHhhCC---eeecCCChhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCH
Confidence            56899999999999999999999999   9999999999999999999999999987643221    1111233333344


Q ss_pred             CCC-C--CCCCcccchhhHhHHHHHHhccChHH-----------------------------HHHHHHHHHhhcccCCCC
Q 044320           83 GTH-T--QQLTEKSDIYGLGIACLYMGLYSFEY-----------------------------LKRFMSLALKYCEDETKA  130 (176)
Q Consensus        83 ~~~-~--~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------------~~~l~~l~~~~~~~~p~~  130 (176)
                      +.. .  ..++.++|+||+|+++|++.++..++                             +..+.+++.+||..+|.+
T Consensus       180 E~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  259 (272)
T cd06629         180 EVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDN  259 (272)
T ss_pred             HHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCChhh
Confidence            332 2  24788999999999999998877654                             235788999999999999


Q ss_pred             CCCHHHHHHH
Q 044320          131 RPSMLEVARQ  140 (176)
Q Consensus       131 Rp~~~~i~~~  140 (176)
                      ||++.++++.
T Consensus       260 Rps~~~il~~  269 (272)
T cd06629         260 RPTARELLQH  269 (272)
T ss_pred             CCCHHHHhhC
Confidence            9999998763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.88  E-value=1.5e-22  Score=151.47  Aligned_cols=130  Identities=25%  Similarity=0.347  Sum_probs=104.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG-   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~-   83 (176)
                      ..+++.++..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||.+........  ....+...+.+|+ 
T Consensus       111 ~~l~~~~~~~i~~~i~~~L~~lH~~g---i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~  187 (286)
T cd06614         111 VRMNEPQIAYVCREVLQGLEYLHSQN---VIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEV  187 (286)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCChhhEEEcCCCCEEECccchhhhhccchhhhccccCCcccCCHhH
Confidence            37999999999999999999999999   99999999999999999999999998765433211  1112223333333 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChH--------------------------HHHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFE--------------------------YLKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~--------------------------~~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      .....++.++|+||||+++|++.++..|                          ++..+.+++.+|++.+|.+||++.++
T Consensus       188 ~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i  267 (286)
T cd06614         188 IKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEEL  267 (286)
T ss_pred             hcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCcchhhCCHHHHHHHHHHhccChhhCcCHHHH
Confidence            3456678999999999999999876543                          23458899999999999999999998


Q ss_pred             HH
Q 044320          138 AR  139 (176)
Q Consensus       138 ~~  139 (176)
                      ++
T Consensus       268 l~  269 (286)
T cd06614         268 LQ  269 (286)
T ss_pred             hh
Confidence            75

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.88  E-value=1.2e-22  Score=150.92  Aligned_cols=128  Identities=19%  Similarity=0.193  Sum_probs=103.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-CeEEeecCCcccCCCCCCCCccccceeeec-CC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF-TPKVFDFEISRLAPVPNINGVVGHVSIVVK-GT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~-~~   84 (176)
                      ..++++++..++.|++.||.|+|+.+   ++|+||+|+||+++.++ .++++|||.+........  ..+...+.+| ..
T Consensus       104 ~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~y~aPE~~  178 (267)
T PHA03390        104 GKLSEAEVKKIIRQLVEALNDLHKHN---IIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSC--YDGTLDYFSPEKI  178 (267)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEEeCCCCeEEEecCccceecCCCcc--CCCCCcccChhhh
Confidence            47999999999999999999999999   99999999999999988 999999999876543322  1223333333 34


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCCC-HHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARPS-MLE  136 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp~-~~~  136 (176)
                      ....++.++|+||+|+++|++.++..||.                           ..+.+++.+||+.+|.+||+ +++
T Consensus       179 ~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~  258 (267)
T PHA03390        179 KGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQKKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNE  258 (267)
T ss_pred             cCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhhcccCCcccccCHHHHHHHHHHhccChhhCCchHHH
Confidence            46678889999999999999988776541                           34678999999999999996 577


Q ss_pred             HHH
Q 044320          137 VAR  139 (176)
Q Consensus       137 i~~  139 (176)
                      +++
T Consensus       259 ~l~  261 (267)
T PHA03390        259 IIK  261 (267)
T ss_pred             Hhc
Confidence            764

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.88  E-value=5.9e-23  Score=157.63  Aligned_cols=130  Identities=15%  Similarity=0.142  Sum_probs=101.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-CCCeEEeecCCcccCCCCCC-----CCccccceee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-KFTPKVFDFEISRLAPVPNI-----NGVVGHVSIV   80 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-~~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~   80 (176)
                      ..+++..++.++.|++.||.|||+.+   ++||||+|+||+++. ++.++++|||.++.......     ....+...+.
T Consensus       109 ~~l~~~~~~~~~~qi~~aL~~LH~~g---ivH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~  185 (342)
T cd07854         109 GPLSEEHARLFMYQLLRGLKYIHSAN---VLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYR  185 (342)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEcCCCceEEECCcccceecCCcccccccccccccccccc
Confidence            46899999999999999999999999   999999999999974 56789999999875432211     1112233344


Q ss_pred             ecCC-C-CCCCCcccchhhHhHHHHHHhccChHHH---------------------------------------------
Q 044320           81 VKGT-H-TQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------------------------  113 (176)
Q Consensus        81 ~~~~-~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------------------------  113 (176)
                      +|+. . ...++.++|+|||||++|++.++..+|.                                             
T Consensus       186 aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (342)
T cd07854         186 SPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPL  265 (342)
T ss_pred             CHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCH
Confidence            4442 2 3557889999999999999988776541                                             


Q ss_pred             --------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 --------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 --------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                              .++.+++.+||..+|++||++.+++.
T Consensus       266 ~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~  299 (342)
T cd07854         266 RDLLPGVNPEALDFLEQILTFNPMDRLTAEEALM  299 (342)
T ss_pred             HHHccCCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence                    23567999999999999999999874

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.88  E-value=6.2e-23  Score=150.50  Aligned_cols=141  Identities=18%  Similarity=0.203  Sum_probs=111.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC----CCeEEeecCCcccCCCCCCC-----Ccccc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK----FTPKVFDFEISRLAPVPNIN-----GVVGH   76 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~----~~~~l~dfg~~~~~~~~~~~-----~~~~~   76 (176)
                      .+.++-..+..+++||..|+.|||+.-   ++||||||.||++..+    |.+||+|+|+++.+..+-..     ...-+
T Consensus       126 ~~~lp~~mvKsilwQil~Gv~YLH~NW---vlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVT  202 (438)
T KOG0666|consen  126 AKQLPRSMVKSILWQILDGVHYLHSNW---VLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVT  202 (438)
T ss_pred             hccCCHHHHHHHHHHHHhhhHHHhhhh---eeeccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEE
Confidence            357999999999999999999999996   9999999999999766    89999999999987655322     22234


Q ss_pred             ceeeecCCC--CCCCCcccchhhHhHHHHHHhccChHHHH----------------------------------------
Q 044320           77 VSIVVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEYLK----------------------------------------  114 (176)
Q Consensus        77 ~~~~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~----------------------------------------  114 (176)
                      .|+.+|++.  ...|+.+.||||.||++.|+++-.+-|..                                        
T Consensus       203 iWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~  282 (438)
T KOG0666|consen  203 IWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEY  282 (438)
T ss_pred             EEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcch
Confidence            566666654  67899999999999999998554432210                                        


Q ss_pred             -----------------------------HHHHHHHhhcccCCCCCCCHHHHHHHHHhhhhcCC
Q 044320          115 -----------------------------RFMSLALKYCEDETKARPSMLEVARQLENISSMLP  149 (176)
Q Consensus       115 -----------------------------~l~~l~~~~~~~~p~~Rp~~~~i~~~l~~~~~~~~  149 (176)
                                                   ...+++.+++..||.+|.|+++.++..--..+.+|
T Consensus       283 q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAleh~yF~~d~lp  346 (438)
T KOG0666|consen  283 QTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALEHPYFTEDPLP  346 (438)
T ss_pred             HHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhcccccccCCCC
Confidence                                         15678899999999999999988876554444433

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.88  E-value=1e-22  Score=150.74  Aligned_cols=129  Identities=25%  Similarity=0.293  Sum_probs=99.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC-----CCCCccccceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP-----NINGVVGHVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~-----~~~~~~~~~~~~~   81 (176)
                      ..+++..+..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||++......     ......+...+.+
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  177 (265)
T cd06652         101 GALTENVTRKYTRQILEGVSYLHSNM---IVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMS  177 (265)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEecCCCCEEECcCccccccccccccccccccCCCCccccC
Confidence            45888999999999999999999999   999999999999999999999999988754321     1111223333333


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++ .....++.++|+||||+++|++.++..||.                         ..+.+++.+|+. +|++||+++
T Consensus       178 PE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~  256 (265)
T cd06652         178 PEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPVLPPHVSDHCRDFLKRIFV-EAKLRPSAD  256 (265)
T ss_pred             hhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhc-ChhhCCCHH
Confidence            33 345677889999999999999988777652                         235677777774 888888888


Q ss_pred             HHHH
Q 044320          136 EVAR  139 (176)
Q Consensus       136 ~i~~  139 (176)
                      ++++
T Consensus       257 ~il~  260 (265)
T cd06652         257 ELLR  260 (265)
T ss_pred             HHhc
Confidence            7764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.88  E-value=7e-23  Score=152.71  Aligned_cols=127  Identities=17%  Similarity=0.138  Sum_probs=100.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecC-C
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKG-T   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~-~   84 (176)
                      ..+++.++..++.|++.||.|+|+.+   ++|+||+|+||+++.++.++++|||.+........ ....+...+.+|+ .
T Consensus        90 ~~~~~~~~~~~~~ql~~~l~~lH~~~---i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~~PE~~  166 (277)
T cd05577          90 PGFPEARAIFYAAQIICGLEHLHQRR---IVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVL  166 (277)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEccCcchhhhccCCccccccCCCCcCCHHHh
Confidence            46999999999999999999999999   99999999999999999999999998865432211 1112222333333 3


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      .+..++.++|+||+|++++++.++..||                           ...+.+++.+||+.+|.+||++.+
T Consensus       167 ~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~  245 (277)
T cd05577         167 QGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRG  245 (277)
T ss_pred             cCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhccccccccCCccCCHHHHHHHHHHccCChhHccCCCc
Confidence            4556788999999999999998877665                           234789999999999999994443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.88  E-value=1.6e-22  Score=149.89  Aligned_cols=128  Identities=21%  Similarity=0.305  Sum_probs=100.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-CCCeEEeecCCcccCCCCCC--CCccccceeeecCCC-
Q 044320           10 SLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-KFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKGTH-   85 (176)
Q Consensus        10 ~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~~~-   85 (176)
                      ++..+..++.|++.||+|||+.+   ++|+||+|.||+++. ++.++++|||.+........  ....+...+.+|+.. 
T Consensus       106 ~~~~~~~~~~qi~~al~~lH~~~---i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~  182 (268)
T cd06624         106 NEQTIIFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVID  182 (268)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCeEEEecchhheecccCCCccccCCCCccccChhhhc
Confidence            78889999999999999999999   999999999999976 67899999998865432211  111233334444432 


Q ss_pred             --CCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           86 --TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        86 --~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                        ...++.++|+||+|+++|++.++..||.                          ..+.+++.+||..+|.+||++.++
T Consensus       183 ~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l  262 (268)
T cd06624         183 KGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDL  262 (268)
T ss_pred             cccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhhccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHH
Confidence              2347889999999999999987766542                          247789999999999999999998


Q ss_pred             HHH
Q 044320          138 ARQ  140 (176)
Q Consensus       138 ~~~  140 (176)
                      ++.
T Consensus       263 l~~  265 (268)
T cd06624         263 LQD  265 (268)
T ss_pred             HhC
Confidence            753

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.88  E-value=1e-22  Score=165.13  Aligned_cols=127  Identities=17%  Similarity=0.118  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-CCCeEEeecCCcccCCCCC---CCCccccceeeecCCC-
Q 044320           11 LAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-KFTPKVFDFEISRLAPVPN---INGVVGHVSIVVKGTH-   85 (176)
Q Consensus        11 ~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~~~~-   85 (176)
                      ...+..++.|++.||.|||+++   |+||||||+|||++. ++.+|++|||+++......   .....+...|.+|+.. 
T Consensus       254 ~~~i~~i~~qll~aL~yLH~~g---IiHRDLKP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~  330 (566)
T PLN03225        254 NKIIQTIMRQILFALDGLHSTG---IVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYI  330 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC---EEeCcCCHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhh
Confidence            3456789999999999999999   999999999999986 5799999999997543211   1111222333333311 


Q ss_pred             ----------------------CCCCCcccchhhHhHHHHHHhccChHHHH-----------------------------
Q 044320           86 ----------------------TQQLTEKSDIYGLGIACLYMGLYSFEYLK-----------------------------  114 (176)
Q Consensus        86 ----------------------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~-----------------------------  114 (176)
                                            ...+..++||||+||++|||.++..+...                             
T Consensus       331 ~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  410 (566)
T PLN03225        331 MSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASP  410 (566)
T ss_pred             ccCCCCCCccccccccccchhccccCCCCcccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccch
Confidence                                  12345567999999999999764321100                             


Q ss_pred             --------------HHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          115 --------------RFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       115 --------------~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                    ...+++.+|+..||++|||+.++++.
T Consensus       411 ~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~L~H  450 (566)
T PLN03225        411 DLRRGFEVLDLDGGAGWELLKSMMRFKGRQRISAKAALAH  450 (566)
T ss_pred             hhhhhhhhccccchHHHHHHHHHccCCcccCCCHHHHhCC
Confidence                          12379999999999999999999874

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=8.9e-23  Score=156.04  Aligned_cols=132  Identities=17%  Similarity=0.154  Sum_probs=100.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~   82 (176)
                      ...+++.++..++.|++.||+|||+++   ++||||||+||+++.++.++|+|||++........   ....+...+.+|
T Consensus        96 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aP  172 (331)
T cd05597          96 EDRLPEDMARFYLAEMVLAIDSVHQLG---YVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISP  172 (331)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEECCCCHHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCH
Confidence            456899999999999999999999999   99999999999999999999999999865443221   112344455555


Q ss_pred             CCC------CCCCCcccchhhHhHHHHHHhccChHHH----------------------------HHHHHHHHhhccc--
Q 044320           83 GTH------TQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------KRFMSLALKYCED--  126 (176)
Q Consensus        83 ~~~------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------~~l~~l~~~~~~~--  126 (176)
                      +..      ...++.++|+||+||++|+|.++..||.                            ..+.+++.+|+..  
T Consensus       173 E~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~li~~ll~~~~  252 (331)
T cd05597         173 EILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQFPPDVTDVSEEAKDLIRRLICSPE  252 (331)
T ss_pred             HHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHHHHHHHcCCCcccCCCccCCCCHHHHHHHHHHccCcc
Confidence            443      2456789999999999999988877652                            2356677776644  


Q ss_pred             CCCCCCCHHHHHHH
Q 044320          127 ETKARPSMLEVARQ  140 (176)
Q Consensus       127 ~p~~Rp~~~~i~~~  140 (176)
                      ++..|+++.++++.
T Consensus       253 ~r~~r~~~~~~l~h  266 (331)
T cd05597         253 TRLGRNGLQDFKDH  266 (331)
T ss_pred             cccCCCCHHHHhcC
Confidence            33336777777665

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.88  E-value=1.7e-22  Score=148.28  Aligned_cols=131  Identities=24%  Similarity=0.317  Sum_probs=106.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      +..+++.++..++.+++.||.|||+.+   ++|+||+|+||+++.++.++++|||.+........  ....+...+.+++
T Consensus        97 ~~~~~~~~~~~i~~~i~~~l~~lh~~~---~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe  173 (258)
T cd08215          97 GKPFPEEQILDWFVQLCLALKYLHSRK---ILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPE  173 (258)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHhCC---EecccCChHHeEEcCCCcEEECCccceeecccCcceecceeeeecccChh
Confidence            467999999999999999999999999   99999999999999999999999998876544321  1112222333333


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                       .....++.++|+||+|++++++.++..++                        +..+.+++.+||..+|.+||++.+++
T Consensus       174 ~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll  253 (258)
T cd08215         174 LCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILKGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQIL  253 (258)
T ss_pred             HhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence             34566788999999999999997776654                        24578899999999999999999987


Q ss_pred             H
Q 044320          139 R  139 (176)
Q Consensus       139 ~  139 (176)
                      +
T Consensus       254 ~  254 (258)
T cd08215         254 Q  254 (258)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.88  E-value=1e-22  Score=154.09  Aligned_cols=135  Identities=19%  Similarity=0.192  Sum_probs=112.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKG   83 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~   83 (176)
                      .++.|++.++..|++||..|+.|||+++   ++|||||.+|||+|+|+.+|+.|||++..+..... ....|.+-|+.++
T Consensus       146 er~~LsErEaRhfFRQIvSAVhYCHknr---VvHRDLKLENILLD~N~NiKIADFGLSNly~~~kfLqTFCGSPLYASPE  222 (668)
T KOG0611|consen  146 ERGSLSEREARHFFRQIVSAVHYCHKNR---VVHRDLKLENILLDQNNNIKIADFGLSNLYADKKFLQTFCGSPLYASPE  222 (668)
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHhhcc---ceecccchhheeecCCCCeeeeccchhhhhccccHHHHhcCCcccCCcc
Confidence            3567999999999999999999999999   99999999999999999999999999987665443 2344555566555


Q ss_pred             CC-CCCC-CcccchhhHhHHHHHHhccChHHHH----------------------HHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           84 TH-TQQL-TEKSDIYGLGIACLYMGLYSFEYLK----------------------RFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        84 ~~-~~~~-~~~~Dv~s~G~~l~~l~~~~~~~~~----------------------~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      +. +..| ++..|-||+|++||.+..|..||-+                      ...-+|.+++-.+|+.|.|+.+|..
T Consensus       223 IvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~GaYrEP~~PSdA~gLIRwmLmVNP~RRATieDiAs  302 (668)
T KOG0611|consen  223 IVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISRGAYREPETPSDASGLIRWMLMVNPERRATIEDIAS  302 (668)
T ss_pred             ccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHHHHHHhhcccccCCCCCchHHHHHHHHHhcCcccchhHHHHhh
Confidence            54 4444 5789999999999999888887732                      4677999999999999999999987


Q ss_pred             HHH
Q 044320          140 QLE  142 (176)
Q Consensus       140 ~l~  142 (176)
                      ...
T Consensus       303 HWW  305 (668)
T KOG0611|consen  303 HWW  305 (668)
T ss_pred             hhe
Confidence            664

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.88  E-value=2e-22  Score=154.10  Aligned_cols=132  Identities=14%  Similarity=0.123  Sum_probs=100.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~   82 (176)
                      +..+++..+..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||++........   ....|...+.+|
T Consensus        96 ~~~l~~~~~~~~~~qi~~al~~lH~~~---iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aP  172 (332)
T cd05623          96 EDRLPEDMARFYLAEMVIAIDSVHQLH---YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISP  172 (332)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEECCCCCEEEeecchheecccCCcceecccccCccccCH
Confidence            456899999999999999999999999   99999999999999999999999999865432221   122345555555


Q ss_pred             CCC------CCCCCcccchhhHhHHHHHHhccChHHH----------------------------HHHHHHHHhhcccCC
Q 044320           83 GTH------TQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------KRFMSLALKYCEDET  128 (176)
Q Consensus        83 ~~~------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------~~l~~l~~~~~~~~p  128 (176)
                      +..      ...++.++|+|||||++|+|.++..||.                            ..+.+++.+|+..++
T Consensus       173 E~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li~~ll~~~~  252 (332)
T cd05623         173 EILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSRE  252 (332)
T ss_pred             HHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCccccCCCccccCCHHHHHHHHHHccChh
Confidence            432      3457889999999999999988877752                            235677777765433


Q ss_pred             --CCCCCHHHHHHH
Q 044320          129 --KARPSMLEVARQ  140 (176)
Q Consensus       129 --~~Rp~~~~i~~~  140 (176)
                        ..|+++.++++.
T Consensus       253 ~r~~r~~~~~~~~h  266 (332)
T cd05623         253 HRLGQNGIEDFKQH  266 (332)
T ss_pred             hhcCCCCHHHHhCC
Confidence              335788877665

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.88  E-value=2.2e-22  Score=147.59  Aligned_cols=129  Identities=22%  Similarity=0.294  Sum_probs=106.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeeecC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVVKG   83 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~~~   83 (176)
                      .+++.+++.++.|++.||+|||+.+   ++|+|++|+||+++.++.++++|||.+........    ....+...+.+++
T Consensus        97 ~~~~~~~~~~~~~l~~~l~~lh~~~---~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE  173 (260)
T cd06606          97 KLPEPVIRKYTRQILEGLAYLHSNG---IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPE  173 (260)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHh
Confidence            7899999999999999999999999   99999999999999999999999999877654432    2222333333333


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                       ......+.++|+||||++++++.++..+|                          +..+.+++.+|+..+|.+||++.+
T Consensus       174 ~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~  253 (260)
T cd06606         174 VIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADE  253 (260)
T ss_pred             hhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHhccccCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHH
Confidence             33555889999999999999998866554                          235889999999999999999999


Q ss_pred             HHH
Q 044320          137 VAR  139 (176)
Q Consensus       137 i~~  139 (176)
                      ++.
T Consensus       254 ll~  256 (260)
T cd06606         254 LLQ  256 (260)
T ss_pred             Hhh
Confidence            875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.88  E-value=2.5e-22  Score=151.07  Aligned_cols=131  Identities=22%  Similarity=0.260  Sum_probs=105.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG-   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~-   83 (176)
                      ..+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+|+ 
T Consensus       110 ~~l~~~~~~~i~~~l~~al~~LH~~g---i~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~  186 (293)
T cd06647         110 TCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV  186 (293)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC---EeeccCCHHHEEEcCCCCEEEccCcceecccccccccccccCChhhcCchh
Confidence            35789999999999999999999999   99999999999999999999999998765433221  1112333333333 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      .....++.++|+||||+++|++.++..||.                          ..+.+++.+||..+|.+||++.++
T Consensus       187 ~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~i  266 (293)
T cd06647         187 VTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKEL  266 (293)
T ss_pred             hccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence            345667889999999999999988776542                          347899999999999999999998


Q ss_pred             HHH
Q 044320          138 ARQ  140 (176)
Q Consensus       138 ~~~  140 (176)
                      +..
T Consensus       267 l~h  269 (293)
T cd06647         267 LQH  269 (293)
T ss_pred             hcC
Confidence            865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.88  E-value=2.4e-22  Score=148.50  Aligned_cols=131  Identities=19%  Similarity=0.148  Sum_probs=103.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeec-C
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVK-G   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~-~   83 (176)
                      ...++..++..++.|++.||+|+|+.+   ++|+||+|+||+++.++.++++|||.+....... .....+...+.++ .
T Consensus        87 ~~~l~~~~~~~~~~~i~~~l~~lH~~~---~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~PE~  163 (262)
T cd05572          87 RGLFDEYTARFYIACVVLAFEYLHNRG---IIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEI  163 (262)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCHHHEEEcCCCCEEEeeCCcccccCcccccccccCCcCccChhH
Confidence            346899999999999999999999999   9999999999999999999999999987655432 1112223333333 3


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCCC---
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARPS---  133 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp~---  133 (176)
                      .....++.++|+||+|+++|++.++..||.                           ..+.+++.+||..+|.+||+   
T Consensus       164 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~  243 (262)
T cd05572         164 ILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLK  243 (262)
T ss_pred             hcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHccCChhhCcCCcc
Confidence            345667889999999999999977776642                           34678999999999999999   


Q ss_pred             --HHHHHH
Q 044320          134 --MLEVAR  139 (176)
Q Consensus       134 --~~~i~~  139 (176)
                        +.++++
T Consensus       244 ~~~~~l~~  251 (262)
T cd05572         244 GGIKDIKK  251 (262)
T ss_pred             cCHHHHhc
Confidence              565554

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.88  E-value=3.3e-22  Score=149.09  Aligned_cols=131  Identities=25%  Similarity=0.304  Sum_probs=106.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG-   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~-   83 (176)
                      ..+++..+..++.|++.|+.|||+.+   ++|+||+|+||+++.++.++++|||++........  ....+...+.+++ 
T Consensus        96 ~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~  172 (277)
T cd06641          96 GPLDETQIATILREILKGLDYLHSEK---KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEV  172 (277)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHccCC---eecCCCCHHhEEECCCCCEEEeecccceecccchhhhccccCCccccChhh
Confidence            46899999999999999999999999   99999999999999999999999998865443221  1112233333333 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHHH------------------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      .....++.++|+||+|+++|++.++..|+.                        ..+.+++.+||..+|.+||++.++++
T Consensus       173 ~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  252 (277)
T cd06641         173 IKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLK  252 (277)
T ss_pred             hccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHHHHHHHhcCCCCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            335667889999999999999988877642                        35888999999999999999999988


Q ss_pred             H
Q 044320          140 Q  140 (176)
Q Consensus       140 ~  140 (176)
                      .
T Consensus       253 ~  253 (277)
T cd06641         253 H  253 (277)
T ss_pred             C
Confidence            4

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.88  E-value=1.6e-22  Score=152.23  Aligned_cols=140  Identities=19%  Similarity=0.223  Sum_probs=115.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Cccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~   80 (176)
                      -+.++--+...++.|++.|++|+|+++   +||.||..+|+++++.-.+|++|-.+++.....++.     ......|..
T Consensus       390 aqtvtt~qlV~masQla~am~hlh~~~---ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMs  466 (563)
T KOG1024|consen  390 AQTVTTIQLVLMASQLAMAMEHLHNHG---VIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMS  466 (563)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhcC---cccchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccC
Confidence            345777788999999999999999999   999999999999999999999999888765433321     123345666


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-------------------------cChHHHHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-------------------------YSFEYLKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-------------------------~~~~~~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++.+....|+.++|+||||+++||+++                         .+...++++..+|.-||...|++||+++
T Consensus       467 lEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~ylkdGyRlaQP~NCPDeLf~vMacCWallpeeRPsf~  546 (563)
T KOG1024|consen  467 LEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEHYLKDGYRLAQPFNCPDELFTVMACCWALLPEERPSFS  546 (563)
T ss_pred             HHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHHHHhccceecCCCCCcHHHHHHHHHHHhcCcccCCCHH
Confidence            666778999999999999999999843                         2223367899999999999999999999


Q ss_pred             HHHHHHHhhhhcC
Q 044320          136 EVARQLENISSML  148 (176)
Q Consensus       136 ~i~~~l~~~~~~~  148 (176)
                      +++.-|.++-.++
T Consensus       547 Qlv~cLseF~~ql  559 (563)
T KOG1024|consen  547 QLVICLSEFHTQL  559 (563)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876654

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.88  E-value=2.3e-22  Score=150.63  Aligned_cols=135  Identities=18%  Similarity=0.130  Sum_probs=105.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Cccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~~   82 (176)
                      +..+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||+++........   ...+...+.++
T Consensus        99 ~~~~~~~~~~~~~~ql~~~l~~lH~~~---~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aP  175 (288)
T cd05583          99 REHFTESEVRVYIAEIVLALDHLHQLG---IIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAP  175 (288)
T ss_pred             cCCcCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEEECccccccccccccccccccCCccccCH
Confidence            356889999999999999999999998   999999999999999999999999988654332211   11223333333


Q ss_pred             CCC-CC--CCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           83 GTH-TQ--QLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        83 ~~~-~~--~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +.. ..  ..+.++|+||||+++|++.++..||                           ...+.+++.+||+.+|++||
T Consensus       176 E~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~  255 (288)
T cd05583         176 EVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPFPKTMSAEARDFIQKLLEKDPKKRL  255 (288)
T ss_pred             HHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHccCCCCCcccCHHHHHHHHHHhcCCHhhcc
Confidence            332 22  3678999999999999999877664                           13478899999999999999


Q ss_pred             CHHHHHHHHHh
Q 044320          133 SMLEVARQLEN  143 (176)
Q Consensus       133 ~~~~i~~~l~~  143 (176)
                      |+.++.+.|..
T Consensus       256 t~~~~~~~l~~  266 (288)
T cd05583         256 GANGADEIKNH  266 (288)
T ss_pred             CcchHHHHhcC
Confidence            98888777664

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.87  E-value=2.3e-22  Score=147.92  Aligned_cols=132  Identities=21%  Similarity=0.271  Sum_probs=104.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-CeEEeecCCcccCCCCCC--CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF-TPKVFDFEISRLAPVPNI--NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~-~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~   82 (176)
                      ...+++..+..++.|++.||.|+|+.+   ++|+||+|+||+++.++ .++++|||.+........  ....+...+.++
T Consensus        95 ~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ap  171 (257)
T cd08225          95 GVLFSEDQILSWFVQISLGLKHIHDRK---ILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSP  171 (257)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEEcCCCCeEEecccccchhccCCcccccccCCCccccCH
Confidence            345899999999999999999999999   99999999999998875 469999998876543321  111233334334


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      + .....++.++|+||||++++++.++..|+                        +..+.+++.+||..+|++||++.++
T Consensus       172 e~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l  251 (257)
T cd08225         172 EICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKICQGYFAPISPNFSRDLRSLISQLFKVSPRDRPSITSI  251 (257)
T ss_pred             HHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHH
Confidence            3 33556788999999999999998775553                        2358889999999999999999998


Q ss_pred             HHH
Q 044320          138 ARQ  140 (176)
Q Consensus       138 ~~~  140 (176)
                      +..
T Consensus       252 l~~  254 (257)
T cd08225         252 LKR  254 (257)
T ss_pred             hhC
Confidence            753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.87  E-value=3.3e-22  Score=150.45  Aligned_cols=130  Identities=18%  Similarity=0.215  Sum_probs=104.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG-   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~-   83 (176)
                      ..+++..+..++.|++.|++|||..+   ++|+||+|+||+++.++.++++|||.+.......  .....+...+.+++ 
T Consensus       111 ~~~~~~~~~~~~~ql~~~l~~lH~~g---ivH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~  187 (292)
T cd06657         111 TRMNEEQIAAVCLAVLKALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEL  187 (292)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEcccccceecccccccccccccCccccCHHH
Confidence            35899999999999999999999999   9999999999999999999999999876543321  11122333344443 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      .....++.++|+||+|+++|++.++..||                          +..+.+++.+||..+|.+||++.++
T Consensus       188 ~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~l  267 (292)
T cd06657         188 ISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRATAAEL  267 (292)
T ss_pred             hcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccCcCHHHH
Confidence            33566788999999999999998876543                          1347788999999999999999998


Q ss_pred             HH
Q 044320          138 AR  139 (176)
Q Consensus       138 ~~  139 (176)
                      ++
T Consensus       268 l~  269 (292)
T cd06657         268 LK  269 (292)
T ss_pred             hc
Confidence            77

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.87  E-value=4.4e-22  Score=147.36  Aligned_cols=131  Identities=21%  Similarity=0.327  Sum_probs=103.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-CeEEeecCCcccCCCCCCC------Cccccce
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF-TPKVFDFEISRLAPVPNIN------GVVGHVS   78 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~-~~~l~dfg~~~~~~~~~~~------~~~~~~~   78 (176)
                      ...+++..+..++.|++.||+|||+.+   ++|+||+|+||+++.++ .++++|||.+.........      ...+...
T Consensus        97 ~~~~~~~~~~~~~~ql~~al~~LH~~~---i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~  173 (268)
T cd06630          97 YGAFKEAVIINYTEQLLRGLSYLHENQ---IIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIA  173 (268)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEEcccccccccccccccCCccccccccccc
Confidence            346899999999999999999999999   99999999999998775 5999999998765432110      1122233


Q ss_pred             eeecC-CCCCCCCcccchhhHhHHHHHHhccChHHH----------------------------HHHHHHHHhhcccCCC
Q 044320           79 IVVKG-THTQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------KRFMSLALKYCEDETK  129 (176)
Q Consensus        79 ~~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------~~l~~l~~~~~~~~p~  129 (176)
                      +.+|+ .....++.++|+||+|++++++.++..+|.                            ..+.+++.+|+..+|.
T Consensus       174 ~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~  253 (268)
T cd06630         174 FMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPE  253 (268)
T ss_pred             eeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccCCCCCCchhhCHHHHHHHHHHcCCCcc
Confidence            33333 335677889999999999999987776542                            3477899999999999


Q ss_pred             CCCCHHHHHH
Q 044320          130 ARPSMLEVAR  139 (176)
Q Consensus       130 ~Rp~~~~i~~  139 (176)
                      +||++.++++
T Consensus       254 ~R~~~~~ll~  263 (268)
T cd06630         254 DRPPSRELLK  263 (268)
T ss_pred             cCcCHHHHhc
Confidence            9999998874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=4.2e-22  Score=146.09  Aligned_cols=130  Identities=20%  Similarity=0.278  Sum_probs=105.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceee-ecC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIV-VKG   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~-~~~   83 (176)
                      ..+++..+..++.|++.|+.|+|+.+   ++|+||+|+||+++.++.++++|||.+........  ....+...+. ++.
T Consensus        94 ~~l~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~  170 (254)
T cd06627          94 GPFPESLVAVYVYQVLQGLAYLHEQG---VIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEV  170 (254)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCHHHEEECCCCCEEEeccccceecCCCcccccccccchhhcCHhh
Confidence            56899999999999999999999999   99999999999999999999999999876554332  1122233333 333


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      .....++.++|+|++|++++++.++..++                        +..+.+++.+|+..+|++||++.+++.
T Consensus       171 ~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         171 IEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDDHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             hcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence            33445788999999999999998877664                        245889999999999999999998874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=3.2e-22  Score=155.27  Aligned_cols=132  Identities=17%  Similarity=0.210  Sum_probs=108.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe-CCCCCeEEeecCCcccCCCC-CCCCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL-DSKFTPKVFDFEISRLAPVP-NINGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~-~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~~~~   82 (176)
                      ....|+++.+.+|++||+.|+.|||+..   +|||||||+|+++ ..-|.+|++|||++..+... ..+...|...|.+|
T Consensus       111 He~Gl~E~La~kYF~QI~~AI~YCHqLH---VVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL~TsCGSLAYSAP  187 (864)
T KOG4717|consen  111 HEEGLNEDLAKKYFAQIVHAISYCHQLH---VVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAP  187 (864)
T ss_pred             hhccccHHHHHHHHHHHHHHHHHHhhhh---hhcccCCcceeEEeeecCceEeeeccccccCCCcchhhcccchhhccCc
Confidence            3467999999999999999999999998   9999999999987 45689999999998765433 33344555556555


Q ss_pred             CCC-CCCC-CcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           83 GTH-TQQL-TEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        83 ~~~-~~~~-~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      ++. +..| .++.||||+||+||-+..|..||.                       .+.+++|..|+..||++|.+.++|
T Consensus       188 EILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImDCKYtvPshvS~eCrdLI~sMLvRdPkkRAslEeI  267 (864)
T KOG4717|consen  188 EILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDCKYTVPSHVSKECRDLIQSMLVRDPKKRASLEEI  267 (864)
T ss_pred             hhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhcccccCchhhhHHHHHHHHHHHhcCchhhccHHHH
Confidence            554 5555 468999999999999988888874                       358999999999999999999988


Q ss_pred             HH
Q 044320          138 AR  139 (176)
Q Consensus       138 ~~  139 (176)
                      +.
T Consensus       268 ~s  269 (864)
T KOG4717|consen  268 VS  269 (864)
T ss_pred             hc
Confidence            75

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.87  E-value=2.6e-22  Score=147.94  Aligned_cols=129  Identities=20%  Similarity=0.201  Sum_probs=103.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecC-C
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKG-T   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~-~   84 (176)
                      ..+++.++..++.|++.||.|||..+   ++|+||+|+||+++.++.++++|||.+....... .....+...+.+|+ .
T Consensus        95 ~~l~~~~~~~~~~~i~~~l~~lh~~~---i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~  171 (258)
T cd05578          95 VKFSEEQVKFWICEIVLALEYLHSKG---IIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVL  171 (258)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeEEcCCCCEEEeecccccccCCCccccccCCChhhcCHHHH
Confidence            47899999999999999999999999   9999999999999999999999999887654332 11222333333333 3


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCCCCH--HH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKARPSM--LE  136 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~Rp~~--~~  136 (176)
                      ....++.++|+||+|+++|++.++..||                          +..+.+++.+||..+|.+||++  .+
T Consensus       172 ~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~  251 (258)
T cd05578         172 CRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKD  251 (258)
T ss_pred             cccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhccccccCcccCcHHHHHHHHHHccCChhHcCCccHHH
Confidence            4556789999999999999998776653                          2468899999999999999999  54


Q ss_pred             HH
Q 044320          137 VA  138 (176)
Q Consensus       137 i~  138 (176)
                      ++
T Consensus       252 l~  253 (258)
T cd05578         252 LK  253 (258)
T ss_pred             Hh
Confidence            43

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.87  E-value=2.1e-22  Score=153.98  Aligned_cols=132  Identities=15%  Similarity=0.150  Sum_probs=100.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Cccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~~   82 (176)
                      +..+++..+..++.|++.||+|+|+.+   ++||||||+||+++.++.++++|||++.........   ...|...+.+|
T Consensus        96 ~~~l~~~~~~~~~~qi~~~L~~lH~~~---iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aP  172 (331)
T cd05624          96 EDRLPEDMARFYIAEMVLAIHSIHQLH---YVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISP  172 (331)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCchHHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCH
Confidence            457899999999999999999999999   999999999999999999999999998765433221   12344555555


Q ss_pred             CCCC------CCCCcccchhhHhHHHHHHhccChHHH----------------------------HHHHHHHHhhcccCC
Q 044320           83 GTHT------QQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------KRFMSLALKYCEDET  128 (176)
Q Consensus        83 ~~~~------~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------~~l~~l~~~~~~~~p  128 (176)
                      +...      ..++.++|+||+|+++|+|.++..||.                            ..+.+++.+|+...+
T Consensus       173 E~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~li~~ll~~~~  252 (331)
T cd05624         173 EILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSHITDVSEEAKDLIQRLICSRE  252 (331)
T ss_pred             HHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHHHHHHHHHcCCCcccCCCccccCCHHHHHHHHHHccCch
Confidence            4332      457889999999999999988877652                            246677777776544


Q ss_pred             CC--CCCHHHHHHH
Q 044320          129 KA--RPSMLEVARQ  140 (176)
Q Consensus       129 ~~--Rp~~~~i~~~  140 (176)
                      +.  |++++++++.
T Consensus       253 ~~~~~~~~~~~~~h  266 (331)
T cd05624         253 RRLGQNGIEDFKKH  266 (331)
T ss_pred             hhcCCCCHHHHhcC
Confidence            33  3567766543

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.87  E-value=3.1e-22  Score=149.75  Aligned_cols=135  Identities=16%  Similarity=0.150  Sum_probs=106.6

Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC--------------------CCCeEEeecCC
Q 044320            2 TSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS--------------------KFTPKVFDFEI   61 (176)
Q Consensus         2 ~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~--------------------~~~~~l~dfg~   61 (176)
                      ..++-.+++.+++..|++|++.+++|||+.+   ++|.||||+||++.+                    +..++++|||.
T Consensus       182 k~N~y~~fpi~~ir~m~~QL~~sv~fLh~~k---l~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGs  258 (415)
T KOG0671|consen  182 KENNYIPFPIDHIRHMGYQLLESVAFLHDLK---LTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGS  258 (415)
T ss_pred             ccCCccccchHHHHHHHHHHHHHHHHHHhcc---eeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCC
Confidence            3445567999999999999999999999999   999999999999831                    22478999999


Q ss_pred             cccCCCCCCCCccccceeeecCCCCCCCCcccchhhHhHHHHHHhccChHH-----------------------------
Q 044320           62 SRLAPVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------------  112 (176)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------------  112 (176)
                      +...............|.+|+-..+..++.++||||+||+|.|+.+|..-|                             
T Consensus       259 Atf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~~  338 (415)
T KOG0671|consen  259 ATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERILGPIPSRMIKKTRK  338 (415)
T ss_pred             cceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHhhCCCcHHHhhhhhh
Confidence            987665554444444455666667999999999999999998773333211                             


Q ss_pred             ----------------------------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ----------------------------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ----------------------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                                              ..++.+|+.+++..||.+|+|+.|++.
T Consensus       339 ~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~  405 (415)
T KOG0671|consen  339 EKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALS  405 (415)
T ss_pred             HhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhc
Confidence                                                    113788999999999999999998875

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.8e-22  Score=143.49  Aligned_cols=137  Identities=21%  Similarity=0.182  Sum_probs=109.9

Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC------CCcccc
Q 044320            3 SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI------NGVVGH   76 (176)
Q Consensus         3 ~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~------~~~~~~   76 (176)
                      +..+.+|+..++.+++.++..||.|+|+..   |+|||+|+.|+|++.+|.+++.|||+++.......      +...-+
T Consensus       115 sn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~k---ilHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvT  191 (376)
T KOG0669|consen  115 SNRKVRFSLSEIKKVMKGLMNGLYYIHRNK---ILHRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVT  191 (376)
T ss_pred             cCccccccHHHHHHHHHHHHHHHHHHHHhh---HHhhcccHhhEEEcCCceEEeeccccccceecccccCCCCcccceee
Confidence            445678999999999999999999999998   99999999999999999999999999976554322      222224


Q ss_pred             ceeeecCCC--CCCCCcccchhhHhHHHHHHhccChHHHH----------------------------------------
Q 044320           77 VSIVVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEYLK----------------------------------------  114 (176)
Q Consensus        77 ~~~~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~----------------------------------------  114 (176)
                      .|+.+++..  ...|+++.|+|.-||++.+|.++++-+.+                                        
T Consensus       192 LwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~  271 (376)
T KOG0669|consen  192 LWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLP  271 (376)
T ss_pred             eecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCC
Confidence            455555544  67899999999999999999666553311                                        


Q ss_pred             ------------------HHHHHHHhhcccCCCCCCCHHHHHHHHH
Q 044320          115 ------------------RFMSLALKYCEDETKARPSMLEVARQLE  142 (176)
Q Consensus       115 ------------------~l~~l~~~~~~~~p~~Rp~~~~i~~~l~  142 (176)
                                        +..+++.+++..||.+|+++++++..--
T Consensus       272 ~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~~  317 (376)
T KOG0669|consen  272 KGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNHDF  317 (376)
T ss_pred             cchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhchhh
Confidence                              3568999999999999999998875533

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.87  E-value=4.6e-22  Score=153.78  Aligned_cols=129  Identities=19%  Similarity=0.259  Sum_probs=112.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC----CCeEEeecCCcccCCCC-CCCCccccceeeecC
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK----FTPKVFDFEISRLAPVP-NINGVVGHVSIVVKG   83 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~----~~~~l~dfg~~~~~~~~-~~~~~~~~~~~~~~~   83 (176)
                      +++.++..++.|++.+++|||+.|   ++|||+||+|+++...    +.++++|||++...... ......|.+++.+|+
T Consensus       132 ~sE~da~~~~~~il~av~~lH~~g---vvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APE  208 (382)
T KOG0032|consen  132 YSERDAAGIIRQILEAVKYLHSLG---VVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPE  208 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC---ceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCceEeeecCCccccCch
Confidence            899999999999999999999999   9999999999999543    47999999999887763 233456777777777


Q ss_pred             CCC-CCCCcccchhhHhHHHHHHhccChHHHH---------------------------HHHHHHHhhcccCCCCCCCHH
Q 044320           84 THT-QQLTEKSDIYGLGIACLYMGLYSFEYLK---------------------------RFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        84 ~~~-~~~~~~~Dv~s~G~~l~~l~~~~~~~~~---------------------------~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ... ..|+...||||.|+++|.|+.+..||..                           .+.+++..++..||.+|+++.
T Consensus       209 vl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~  288 (382)
T KOG0032|consen  209 VLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAA  288 (382)
T ss_pred             hhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHH
Confidence            665 8999999999999999999888888743                           478999999999999999999


Q ss_pred             HHHHH
Q 044320          136 EVARQ  140 (176)
Q Consensus       136 ~i~~~  140 (176)
                      ++++.
T Consensus       289 ~~L~H  293 (382)
T KOG0032|consen  289 QALQH  293 (382)
T ss_pred             HHhcC
Confidence            99984

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=2.5e-21  Score=166.01  Aligned_cols=138  Identities=25%  Similarity=0.383  Sum_probs=104.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceee-ecCCCC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIV-VKGTHT   86 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~-~~~~~~   86 (176)
                      .+++.++.+++.|++.||+|+|....+.++|||+||+||+++.++..++. ++.........  ...+...|. |+....
T Consensus       776 ~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~~--~~~~t~~y~aPE~~~~  852 (968)
T PLN00113        776 NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDT--KCFISSAYVAPETRET  852 (968)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccCC--CccccccccCcccccC
Confidence            47899999999999999999995433339999999999999988877765 55443322111  112233344 444456


Q ss_pred             CCCCcccchhhHhHHHHHHhccChHH-----------------------------------------HHHHHHHHHhhcc
Q 044320           87 QQLTEKSDIYGLGIACLYMGLYSFEY-----------------------------------------LKRFMSLALKYCE  125 (176)
Q Consensus        87 ~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------------------------~~~l~~l~~~~~~  125 (176)
                      ..++.++|||||||++||+.++..|+                                         ..++.+++.+||.
T Consensus       853 ~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~  932 (968)
T PLN00113        853 KDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTA  932 (968)
T ss_pred             CCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCc
Confidence            77899999999999999998876553                                         1135678889999


Q ss_pred             cCCCCCCCHHHHHHHHHhhhhcC
Q 044320          126 DETKARPSMLEVARQLENISSML  148 (176)
Q Consensus       126 ~~p~~Rp~~~~i~~~l~~~~~~~  148 (176)
                      .+|++||++.++++.|+++....
T Consensus       933 ~~P~~RPt~~evl~~L~~~~~~~  955 (968)
T PLN00113        933 TDPTARPCANDVLKTLESASRSS  955 (968)
T ss_pred             CCchhCcCHHHHHHHHHHhhccc
Confidence            99999999999999999886643

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.86  E-value=1.5e-21  Score=143.02  Aligned_cols=127  Identities=19%  Similarity=0.153  Sum_probs=102.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC--CCCCccccceeeecC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP--NINGVVGHVSIVVKG-   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~~~~-   83 (176)
                      ..+++.++..++.|++.|+.|+|+.+   ++|+||+|.||+++.++.++++|||.+......  ......+...+.+|+ 
T Consensus        88 ~~l~~~~~~~~~~qi~~~l~~lh~~~---~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~  164 (250)
T cd05123          88 GRFSEERARFYAAEIVLALEYLHSLG---IIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEV  164 (250)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCCcCCccccChHH
Confidence            46899999999999999999999999   999999999999999999999999988765432  111222333333333 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      ......+.++|+||||+++|++.++..+|                       +..+.+++.+||..+|+.||++.+
T Consensus       165 ~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         165 LLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKILKDPLRFPEFLSPEARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             hCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcCCHhhCCCccc
Confidence            33555788999999999999998887665                       235789999999999999999954

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.86  E-value=2.3e-21  Score=147.59  Aligned_cols=141  Identities=23%  Similarity=0.320  Sum_probs=115.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhc-----CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC------CCCCcc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHT-----EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP------NINGVV   74 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~-----~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~------~~~~~~   74 (176)
                      +..++.+..++++..+|.||+|||.     +|+|.|.|||||+.|||+..++.|-|+|+|++-.....      ..+...
T Consensus       302 r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rV  381 (513)
T KOG2052|consen  302 RNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRV  381 (513)
T ss_pred             hccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCCcccCCCCCcc
Confidence            4678999999999999999999994     67899999999999999999999999999998765432      244567


Q ss_pred             ccceeeecCCCCCCCC-------cccchhhHhHHHHHH------------------------------------------
Q 044320           75 GHVSIVVKGTHTQQLT-------EKSDIYGLGIACLYM------------------------------------------  105 (176)
Q Consensus        75 ~~~~~~~~~~~~~~~~-------~~~Dv~s~G~~l~~l------------------------------------------  105 (176)
                      |+..|++|+.......       ..+||||||.++||+                                          
T Consensus       382 GTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~  461 (513)
T KOG2052|consen  382 GTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPN  461 (513)
T ss_pred             ceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHHhcceeecccCCC
Confidence            8888888877644333       259999999999998                                          


Q ss_pred             ---hccChHHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHhhhh
Q 044320          106 ---GLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENISS  146 (176)
Q Consensus       106 ---~~~~~~~~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~~~~~  146 (176)
                         .....+....+.++|+.||..+|..|-|+-.|.+.|.++..
T Consensus       462 ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~  505 (513)
T KOG2052|consen  462 IPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSN  505 (513)
T ss_pred             CCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhc
Confidence               11122233458889999999999999999999999998875

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.86  E-value=3.4e-22  Score=154.59  Aligned_cols=133  Identities=23%  Similarity=0.230  Sum_probs=114.7

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeec
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVK   82 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~   82 (176)
                      +.+..|+..++..++.-+..|++|||+++   ||+|||||+|.+++.+|.+|+.|||+++...... .+...|++.|.+|
T Consensus       512 rdRg~Fdd~tarF~~acv~EAfeYLH~k~---iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KTwTFcGTpEYVAP  588 (732)
T KOG0614|consen  512 RDRGSFDDYTARFYVACVLEAFEYLHRKG---IIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKTWTFCGTPEYVAP  588 (732)
T ss_pred             hhcCCcccchhhhhHHHHHHHHHHHHhcC---ceeccCChhheeeccCCceEEeehhhHHHhccCCceeeecCCcccccc
Confidence            45778999999999999999999999999   9999999999999999999999999999877655 4556788877777


Q ss_pred             CCC-CCCCCcccchhhHhHHHHHHhccChHHHH-------------------------HHHHHHHhhcccCCCCCCC---
Q 044320           83 GTH-TQQLTEKSDIYGLGIACLYMGLYSFEYLK-------------------------RFMSLALKYCEDETKARPS---  133 (176)
Q Consensus        83 ~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~-------------------------~l~~l~~~~~~~~p~~Rp~---  133 (176)
                      +.. ......++|.||+|+++||+++|.+||..                         ...+++++.+..+|..|-.   
T Consensus       589 EIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkGid~i~~Pr~I~k~a~~Lik~LCr~~P~ERLG~~~  668 (732)
T KOG0614|consen  589 EIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILKGIDKIEFPRRITKTATDLIKKLCRDNPTERLGYQK  668 (732)
T ss_pred             hhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhhhhhhhcccccchhHHHHHHHHHhcCcHhhhcccc
Confidence            654 77778899999999999999999999843                         3678999999999999955   


Q ss_pred             --HHHHHH
Q 044320          134 --MLEVAR  139 (176)
Q Consensus       134 --~~~i~~  139 (176)
                        +.+|-.
T Consensus       669 ~gI~DIkk  676 (732)
T KOG0614|consen  669 GGINDIKK  676 (732)
T ss_pred             CChHHHHh
Confidence              555544

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.86  E-value=1.8e-21  Score=149.13  Aligned_cols=145  Identities=19%  Similarity=0.324  Sum_probs=115.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCC------CCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC----CCCCccc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEA------DPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP----NINGVVG   75 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~------~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~----~~~~~~~   75 (176)
                      ...++|.+..+|+..+++||+|||+..      +++|+|||||+.|||+..++++-|+|||++.+....    ...+..|
T Consensus       301 ~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVG  380 (534)
T KOG3653|consen  301 ANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVG  380 (534)
T ss_pred             hccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhh
Confidence            456899999999999999999999742      578999999999999999999999999999875422    2334567


Q ss_pred             cceeeecCCCCCCCC-------cccchhhHhHHHHHHhc-------cC-----hHH------------------------
Q 044320           76 HVSIVVKGTHTQQLT-------EKSDIYGLGIACLYMGL-------YS-----FEY------------------------  112 (176)
Q Consensus        76 ~~~~~~~~~~~~~~~-------~~~Dv~s~G~~l~~l~~-------~~-----~~~------------------------  112 (176)
                      +..|++|+...+..+       .+.||||+|.++||+..       ++     .||                        
T Consensus       381 T~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~RP  460 (534)
T KOG3653|consen  381 TRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRKKQRP  460 (534)
T ss_pred             hhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHHHhhccCC
Confidence            777777776533222       36999999999999822       11     122                        


Q ss_pred             -----------HHHHHHHHHhhcccCCCCCCCHHHHHHHHHhhhhcCCC
Q 044320          113 -----------LKRFMSLALKYCEDETKARPSMLEVARQLENISSMLPE  150 (176)
Q Consensus       113 -----------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~~~~~~~~~  150 (176)
                                 +..+++.+..||..|++.|.|+.-+-+++..+....+.
T Consensus       461 ~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~~~  509 (534)
T KOG3653|consen  461 KIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLWED  509 (534)
T ss_pred             CChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccCCc
Confidence                       12388999999999999999999999999988776554

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.86  E-value=1.8e-21  Score=144.12  Aligned_cols=128  Identities=21%  Similarity=0.237  Sum_probs=95.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-----CCCccccceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-----INGVVGHVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-----~~~~~~~~~~~~   81 (176)
                      ..+++..++.++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||+++......     .....+...+.+
T Consensus       101 ~~l~~~~~~~~~~~i~~al~~LH~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  177 (264)
T cd06653         101 GALTENVTRRYTRQILQGVSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMS  177 (264)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEECccccccccccccccCccccccCCcccccC
Confidence            45889999999999999999999999   9999999999999999999999999987643211     111223333444


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++ .....++.++|+||||++++++.++..||.                         +.+.+++.+||. ++..||+..
T Consensus       178 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~  256 (264)
T cd06653         178 PEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIATQPTKPMLPDGVSDACRDFLKQIFV-EEKRRPTAE  256 (264)
T ss_pred             HhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCCCCcccCHHHHHHHHHHhc-CcccCccHH
Confidence            44 345667889999999999999988877753                         235556666665 346666665


Q ss_pred             HHH
Q 044320          136 EVA  138 (176)
Q Consensus       136 ~i~  138 (176)
                      +++
T Consensus       257 ~~~  259 (264)
T cd06653         257 FLL  259 (264)
T ss_pred             HHh
Confidence            544

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.86  E-value=1.5e-21  Score=146.42  Aligned_cols=131  Identities=17%  Similarity=0.143  Sum_probs=100.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Cccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~~   82 (176)
                      +..+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++.........   ...+...+.+|
T Consensus        99 ~~~l~~~~~~~~~~qi~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aP  175 (290)
T cd05613          99 RERFKEQEVQIYSGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAP  175 (290)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeEECCCCCEEEeeCccceecccccccccccccCCcccCCh
Confidence            356889999999999999999999999   999999999999999999999999998765432211   12233334444


Q ss_pred             CCC---CCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCC
Q 044320           83 GTH---TQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARP  132 (176)
Q Consensus        83 ~~~---~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +..   ...++.++|+||||+++|++.++..|+.                           ..+.+++.+||..+|++||
T Consensus       176 E~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~p~~R~  255 (290)
T cd05613         176 DIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDIIQRLLMKDPKKRL  255 (290)
T ss_pred             hhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccCCCCCccCCHHHHHHHHHHhcCCHHHhc
Confidence            433   2346788999999999999988876541                           2367889999999999997


Q ss_pred             -----CHHHHHH
Q 044320          133 -----SMLEVAR  139 (176)
Q Consensus       133 -----~~~~i~~  139 (176)
                           +..++++
T Consensus       256 ~~~~~~~~~l~~  267 (290)
T cd05613         256 GCGPSDADEIKK  267 (290)
T ss_pred             CCCCCCHHHHHc
Confidence                 4555543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.86  E-value=1.3e-21  Score=158.39  Aligned_cols=141  Identities=19%  Similarity=0.319  Sum_probs=116.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCc-----ccccee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV-----VGHVSI   79 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~-----~~~~~~   79 (176)
                      .+.++..+..+.+..|||+|+.|||.+.   +|||||..+|||+.+-..+|+.|||+++........+.     ....|.
T Consensus       791 hr~~igsq~lLnw~~QIAkgM~YLe~qr---lVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwm  867 (1177)
T KOG1025|consen  791 HRDNIGSQDLLNWCYQIAKGMKYLEEQR---LVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWM  867 (1177)
T ss_pred             hhccccHHHHHHHHHHHHHHHHHHHhcc---hhhhhhhhhheeecCCCeEEEEecchhhccCcccccccccccccCcHHH
Confidence            4667888999999999999999999998   99999999999999999999999999998765543332     222344


Q ss_pred             eecCCCCCCCCcccchhhHhHHHHHHhccCh-HH------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           80 VVKGTHTQQLTEKSDIYGLGIACLYMGLYSF-EY------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        80 ~~~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~-~~------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +.+......|+.++|||||||.+||++|... |+                        .-++..++.+||..|+..||+|
T Consensus       868 ale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle~geRLsqPpiCtiDVy~~mvkCwmid~~~rp~f  947 (1177)
T KOG1025|consen  868 ALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLEKGERLSQPPICTIDVYMVMVKCWMIDADSRPTF  947 (1177)
T ss_pred             HHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHhccccCCCCCCccHHHHHHHHHHhccCcccCccH
Confidence            4444557889999999999999999966332 21                        2257889999999999999999


Q ss_pred             HHHHHHHHhhhhcC
Q 044320          135 LEVARQLENISSML  148 (176)
Q Consensus       135 ~~i~~~l~~~~~~~  148 (176)
                      +++.+.+.++....
T Consensus       948 kel~~~fs~~ardp  961 (1177)
T KOG1025|consen  948 KELAEEFSRMARDP  961 (1177)
T ss_pred             HHHHHHHHHHhcCc
Confidence            99999999887764

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.86  E-value=2.5e-21  Score=142.84  Aligned_cols=131  Identities=25%  Similarity=0.304  Sum_probs=102.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--Cccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~   82 (176)
                      .+..+++.+++.++.|++.||.|+|+.+   ++|+|++|+|++++. +.++++|||++.........  ...+...+.++
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~p  174 (260)
T cd08222          99 TGKTLSENQVCEWFIQLLLGVHYMHQRR---ILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSP  174 (260)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHcC---ccccCCChhheEeec-CCEeecccCceeecCCCcccccCCCCCcCccCH
Confidence            3457999999999999999999999999   999999999999975 56999999988664332211  11222223333


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      + .....++.++|+||||+++|++.++..+|                        +..+.+++.+||..+|++||++.++
T Consensus       175 e~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i  254 (260)
T cd08222         175 EALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEI  254 (260)
T ss_pred             HHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCCcchhcHHHHHHHHHHhcCChhhCcCHHHH
Confidence            3 33556778999999999999987655432                        3468889999999999999999998


Q ss_pred             HH
Q 044320          138 AR  139 (176)
Q Consensus       138 ~~  139 (176)
                      ++
T Consensus       255 l~  256 (260)
T cd08222         255 LR  256 (260)
T ss_pred             hh
Confidence            75

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.85  E-value=2.1e-21  Score=144.37  Aligned_cols=130  Identities=22%  Similarity=0.243  Sum_probs=102.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---------------
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---------------   71 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---------------   71 (176)
                      ..+++.+++.++.|++.||.|||+.+   ++|+|++|+||+++.++.++++|||.+.........               
T Consensus        97 ~~l~~~~~~~i~~ql~~~l~~Lh~~~---~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (280)
T cd05581          97 GSLDEKCTRFYAAEILLALEYLHSKG---IIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIE  173 (280)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEecCCccccccCCccccccCCCCCcccccccc
Confidence            46999999999999999999999999   999999999999999999999999988765432210               


Q ss_pred             -------CccccceeeecC-CCCCCCCcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHH
Q 044320           72 -------GVVGHVSIVVKG-THTQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLA  120 (176)
Q Consensus        72 -------~~~~~~~~~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~  120 (176)
                             ...+...+.+++ ......+.++|+||+|++++++.++..+|                       +..+.+++
T Consensus       174 ~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  253 (280)
T cd05581         174 KNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYSFPPNFPPDAKDLI  253 (280)
T ss_pred             ccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhcCCCCCCccCHHHHHHH
Confidence                   111222223333 33455788999999999999998876654                       23578999


Q ss_pred             HhhcccCCCCCCCH----HHHHH
Q 044320          121 LKYCEDETKARPSM----LEVAR  139 (176)
Q Consensus       121 ~~~~~~~p~~Rp~~----~~i~~  139 (176)
                      .+||..+|.+||++    .+++.
T Consensus       254 ~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         254 EKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             HHHhcCCHhhCCCcccCHHHHhc
Confidence            99999999999999    66553

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.85  E-value=7e-21  Score=139.82  Aligned_cols=130  Identities=22%  Similarity=0.217  Sum_probs=102.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC-CCCCcccccee-eecCCC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP-NINGVVGHVSI-VVKGTH   85 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~-~~~~~~   85 (176)
                      .++-+++..++.|++.|++|+|+.+   |+||||||+||++..+..+|+.|||+++..... .-+.....+++ +++...
T Consensus       114 elDH~tis~i~yq~~~~ik~lhs~~---IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil  190 (369)
T KOG0665|consen  114 ELDHETISYILYQMLCGIKHLHSAG---IIHRDLKPSNIVVNSDCTLKILDFGLARTEDTDFMMTPYVVTRYYRAPEVIL  190 (369)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHhcc---eeecccCcccceecchhheeeccchhhcccCcccccCchhheeeccCchhee
Confidence            3566788999999999999999999   999999999999999999999999999876655 21222223334 444445


Q ss_pred             CCCCCcccchhhHhHHHHHHhccCh-----------------------HHH-----------------------------
Q 044320           86 TQQLTEKSDIYGLGIACLYMGLYSF-----------------------EYL-----------------------------  113 (176)
Q Consensus        86 ~~~~~~~~Dv~s~G~~l~~l~~~~~-----------------------~~~-----------------------------  113 (176)
                      +..+...+||||+||++.||..+..                       .|.                             
T Consensus       191 ~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~  270 (369)
T KOG0665|consen  191 GMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDS  270 (369)
T ss_pred             ccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcc
Confidence            6679999999999999998832221                       121                             


Q ss_pred             -------------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 -------------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 -------------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                   +..++++.+++..+|++|.+.++++..
T Consensus       271 ~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~H  310 (369)
T KOG0665|consen  271 LFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRH  310 (369)
T ss_pred             cccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcC
Confidence                         127789999999999999999988764

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.85  E-value=7.2e-22  Score=165.67  Aligned_cols=130  Identities=22%  Similarity=0.212  Sum_probs=106.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC------CCCccccceee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN------INGVVGHVSIV   80 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~------~~~~~~~~~~~   80 (176)
                      +..++.....+-.|++.|+.|||.+|   |||||+||.||+++.+|.+|++|||.+.....+-      .....|++.|+
T Consensus      1329 ri~dE~vt~vyt~qll~gla~LH~~g---IVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YM 1405 (1509)
T KOG4645|consen 1329 RIEDEMVTRVYTKQLLEGLAYLHEHG---IVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYM 1405 (1509)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHhcC---ceecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhc
Confidence            44566667778899999999999999   9999999999999999999999999997654432      22445777777


Q ss_pred             ecCCC----CCCCCcccchhhHhHHHHHHhccChHHHH-------------------------HHHHHHHhhcccCCCCC
Q 044320           81 VKGTH----TQQLTEKSDIYGLGIACLYMGLYSFEYLK-------------------------RFMSLALKYCEDETKAR  131 (176)
Q Consensus        81 ~~~~~----~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~-------------------------~l~~l~~~~~~~~p~~R  131 (176)
                      +|+..    +..-..++||||+||+..||.+|+.||.+                         .-++++.+|+..||+.|
T Consensus      1406 APEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh~Pq~P~~ls~~g~dFle~Cl~~dP~~R 1485 (1509)
T KOG4645|consen 1406 APEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAGHKPQIPERLSSEGRDFLEHCLEQDPKMR 1485 (1509)
T ss_pred             CchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhccCCCCCchhhhHhHHHHHHHHHhcCchhh
Confidence            77665    34456789999999999999999999864                         36789999999999999


Q ss_pred             CCHHHHHH
Q 044320          132 PSMLEVAR  139 (176)
Q Consensus       132 p~~~~i~~  139 (176)
                      =++.++++
T Consensus      1486 w~~~qlle 1493 (1509)
T KOG4645|consen 1486 WTASQLLE 1493 (1509)
T ss_pred             hHHHHHHH
Confidence            66665544

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.84  E-value=7e-21  Score=138.12  Aligned_cols=128  Identities=21%  Similarity=0.235  Sum_probs=104.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecC-CCC
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKG-THT   86 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~-~~~   86 (176)
                      +++..++.++.+++.++.++|+.+   ++|+|++|+||+++.++.++++|||.+....... .....+...+.+++ ...
T Consensus        84 ~~~~~~~~~~~~l~~~l~~lh~~~---i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~~  160 (244)
T smart00220       84 LSEDEARFYARQILSALEYLHSNG---IIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPEVLLG  160 (244)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC---eecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCcCCCCHHHHcc
Confidence            889999999999999999999998   9999999999999999999999999987765431 11222333333333 335


Q ss_pred             CCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           87 QQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        87 ~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      ..++.++|+||+|++++++.++..++                           +..+.+++.+|+..+|.+||++.++++
T Consensus       161 ~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      161 KGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccCHHHHhh
Confidence            67788999999999999998775443                           346789999999999999999999886

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=3.6e-21  Score=147.33  Aligned_cols=133  Identities=19%  Similarity=0.246  Sum_probs=111.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC---CCCCeEEeecCCcccCCCCCCC---------C
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD---SKFTPKVFDFEISRLAPVPNIN---------G   72 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~---~~~~~~l~dfg~~~~~~~~~~~---------~   72 (176)
                      ..+..+++++..|+.||+.||.||... .+||||-||||.|||+-   ..|.+||+|||+++.+......         .
T Consensus       561 QhklmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQ  639 (775)
T KOG1151|consen  561 QHKLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQ  639 (775)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecc
Confidence            456688999999999999999999987 78899999999999984   3578999999999998765432         3


Q ss_pred             ccccceeeecCCC-----CCCCCcccchhhHhHHHHHHhccChHHH-----------------------------HHHHH
Q 044320           73 VVGHVSIVVKGTH-----TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------------KRFMS  118 (176)
Q Consensus        73 ~~~~~~~~~~~~~-----~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------------~~l~~  118 (176)
                      ..|++|+.+|+.+     ...++.+.||||+||++|.++.|..||-                             .+...
T Consensus       640 gAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqeNTIlkAtEVqFP~KPvVsseAka  719 (775)
T KOG1151|consen  640 GAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKATEVQFPPKPVVSSEAKA  719 (775)
T ss_pred             cCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhhhchhcceeccCCCCCccCHHHHH
Confidence            4678888888765     5678999999999999999998888872                             24778


Q ss_pred             HHHhhcccCCCCCCCHHHHH
Q 044320          119 LALKYCEDETKARPSMLEVA  138 (176)
Q Consensus       119 l~~~~~~~~p~~Rp~~~~i~  138 (176)
                      +|.+|+.+.-+.|....++.
T Consensus       720 FIRRCLaYRKeDR~DV~qLA  739 (775)
T KOG1151|consen  720 FIRRCLAYRKEDRIDVQQLA  739 (775)
T ss_pred             HHHHHHHhhhhhhhhHHHHc
Confidence            99999999988888766553

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.83  E-value=1e-20  Score=143.73  Aligned_cols=123  Identities=18%  Similarity=0.217  Sum_probs=101.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      -.+|.+..+..+|.+||-||-+||++|   |++||||.+||+++.+|.+||.|||.++..-...  .....|++.|.+|+
T Consensus       444 ~GkFKEp~AvFYAaEiaigLFFLh~kg---IiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPE  520 (683)
T KOG0696|consen  444 VGKFKEPVAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPE  520 (683)
T ss_pred             hcccCCchhhhhhHHHHHHhhhhhcCC---eeeeeccccceEeccCCceEeeecccccccccCCcceeeecCCCcccccc
Confidence            356788899999999999999999999   9999999999999999999999999998643332  23345666666555


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHHH-----------------------HHHHHHHhhcccCCCCC
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYLK-----------------------RFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~-----------------------~l~~l~~~~~~~~p~~R  131 (176)
                      + ..++|+.+.|+||||++||||+.+..||-.                       +...+++..+...|.+|
T Consensus       521 Ii~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI~ehnvsyPKslSkEAv~ickg~ltK~P~kR  592 (683)
T KOG0696|consen  521 IIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAIMEHNVSYPKSLSKEAVAICKGLLTKHPGKR  592 (683)
T ss_pred             eEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHccCcCcccccHHHHHHHHHHhhcCCccc
Confidence            4 488999999999999999999999888732                       35667777777778777

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.83  E-value=2.2e-20  Score=155.22  Aligned_cols=104  Identities=18%  Similarity=0.162  Sum_probs=90.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC---CCCccccceeeecCC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN---INGVVGHVSIVVKGT   84 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~~~   84 (176)
                      +++++.+++|+.+++.||.-+|+.|   +|||||||+|||+|..|++|+.|||.+-.+...+   .....|++.|..|+.
T Consensus       171 ~~pE~~ArFY~aEiVlAldslH~mg---yVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEv  247 (1317)
T KOG0612|consen  171 RLPEDWARFYTAEIVLALDSLHSMG---YVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEV  247 (1317)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhcc---ceeccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHH
Confidence            7999999999999999999999999   9999999999999999999999999987776544   234456666655554


Q ss_pred             C-----C-CCCCcccchhhHhHHHHHHhccChHHHH
Q 044320           85 H-----T-QQLTEKSDIYGLGIACLYMGLYSFEYLK  114 (176)
Q Consensus        85 ~-----~-~~~~~~~Dv~s~G~~l~~l~~~~~~~~~  114 (176)
                      .     + +.|+..+|+||+||++|||+.|..||..
T Consensus       248 Lqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYa  283 (1317)
T KOG0612|consen  248 LQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYA  283 (1317)
T ss_pred             HHhhcCCccccCCccchhhhHHHHHHHHcCCCcchH
Confidence            3     3 7799999999999999999999999864

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.82  E-value=1.4e-21  Score=140.71  Aligned_cols=133  Identities=22%  Similarity=0.288  Sum_probs=101.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccc-eeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHV-SIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~-~~~~~   82 (176)
                      ++..++++-+-+|..-...||.||-..-  .|||||+||+|||++..|.+|++|||++.-...+- .+.-.|-. |.+|+
T Consensus       160 q~~~ipE~Ilg~ItvatV~AL~yLK~~l--kiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPE  237 (361)
T KOG1006|consen  160 QKSRIPENILGHITVATVDALDYLKEEL--KIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPE  237 (361)
T ss_pred             HhccCcHhhhhheeeeehhHHHHHHHHh--hhhhccCChhheEEecCCCEeeecccchHhHHHHHHhhhccCCccccChh
Confidence            4556777777777777889999997632  39999999999999999999999999986543221 11122323 33333


Q ss_pred             CCC--CCCCCcccchhhHhHHHHHHhccChHHHH------------------------------HHHHHHHhhcccCCCC
Q 044320           83 GTH--TQQLTEKSDIYGLGIACLYMGLYSFEYLK------------------------------RFMSLALKYCEDETKA  130 (176)
Q Consensus        83 ~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~------------------------------~l~~l~~~~~~~~p~~  130 (176)
                      .+.  ...|..++||||+|+.+||+.+|..|+.+                              .+..++.-|+..+..+
T Consensus       238 Ri~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~  317 (361)
T KOG1006|consen  238 RIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIKDRSD  317 (361)
T ss_pred             ccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHHHHHHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhhccccc
Confidence            332  44688999999999999999988887632                              3778999999999999


Q ss_pred             CCCHHHHHH
Q 044320          131 RPSMLEVAR  139 (176)
Q Consensus       131 Rp~~~~i~~  139 (176)
                      ||.+.++.+
T Consensus       318 Rpky~~Lk~  326 (361)
T KOG1006|consen  318 RPKYDDLKK  326 (361)
T ss_pred             Ccchhhhhc
Confidence            999998765

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.82  E-value=2.1e-20  Score=130.30  Aligned_cols=107  Identities=23%  Similarity=0.356  Sum_probs=84.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC-ccccceeeecC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING-VVGHVSIVVKG   83 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~~~   83 (176)
                      ++..+++.-.=+||..+..||.|||++-.  ++|||+||+|||++..|.+|+||||.+....++-... ..|-..|.+|+
T Consensus       141 ~g~~ipE~vlGkIa~Svv~al~~L~~kL~--vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAkt~daGCkpYmaPE  218 (282)
T KOG0984|consen  141 KGGTIPEDVLGKIAVSVVHALEFLHSKLS--VIHRDVKPSNILINYDGQVKICDFGISGYLVDSIAKTMDAGCKPYMAPE  218 (282)
T ss_pred             cCCcCchHHhhHhHHHHHHHHHHHHHHhh--hhhccCCcceEEEccCCcEEEcccccceeehhhhHHHHhcCCCccCChh
Confidence            46678888888999999999999998643  9999999999999999999999999998765443211 12223333333


Q ss_pred             C-----CCCCCCcccchhhHhHHHHHHhccChHHH
Q 044320           84 T-----HTQQLTEKSDIYGLGIACLYMGLYSFEYL  113 (176)
Q Consensus        84 ~-----~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~  113 (176)
                      .     ....|+.++||||+|+.+.||.+...|+.
T Consensus       219 ri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~  253 (282)
T KOG0984|consen  219 RINPELNQKGYSVKSDVWSLGITMIEMAILRFPYE  253 (282)
T ss_pred             hcCcccCcccceeehhhhhhhhhhhhhhhcccccc
Confidence            2     35588999999999999999998888775

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.82  E-value=2.6e-20  Score=131.75  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=101.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-CCeEEeecCCcccCCCCC-CCCccccceeeecCCC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEISRLAPVPN-INGVVGHVSIVVKGTH   85 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~~~   85 (176)
                      .|+-.++..++.+++.||.|||+.|   |+|||+||.|++++.. ..++++|||++....... .+......++--|++.
T Consensus       128 tl~d~dIryY~~elLkALdyCHS~G---ImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eYnVRVASRyfKGPELL  204 (338)
T KOG0668|consen  128 TLTDYDIRYYIYELLKALDYCHSMG---IMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELL  204 (338)
T ss_pred             hhchhhHHHHHHHHHHHHhHHHhcC---cccccCCcceeeechhhceeeeeecchHhhcCCCceeeeeeehhhcCCchhe
Confidence            4667788999999999999999999   9999999999999864 679999999998765433 3333444455444443


Q ss_pred             --CCCCCcccchhhHhHHHHHHhccChHHH--------------------------------------------------
Q 044320           86 --TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------------------------------  113 (176)
Q Consensus        86 --~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------------------------------  113 (176)
                        .+.|..+-|+|||||++..|.....||.                                                  
T Consensus       205 Vdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~  284 (338)
T KOG0668|consen  205 VDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSR  284 (338)
T ss_pred             eechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHH
Confidence              6678889999999999998855555542                                                  


Q ss_pred             -----------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 -----------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 -----------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                 .+..+++.+.+..|-..|+|+.+...
T Consensus       285 Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~  321 (338)
T KOG0668|consen  285 FINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMA  321 (338)
T ss_pred             hCCccccccCChHHHHHHHHHHhhccccccchHHHhc
Confidence                       13667888888889889998887654

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=9.7e-21  Score=137.19  Aligned_cols=97  Identities=23%  Similarity=0.275  Sum_probs=79.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC---ccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING---VVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~---~~~~~~~~~~   82 (176)
                      ...|+-+.+.-+..||..||+|||+.+   |.||||||.|.++.+|..+|++|||+++.........   ..-+.|+.++
T Consensus       150 PQ~Ls~DHvKVFlYQILRGLKYLHsA~---ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAP  226 (449)
T KOG0664|consen  150 PQALTPDHVKVFVYQILRGLKYLHTAN---ILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAP  226 (449)
T ss_pred             CCCCCcchhhhhHHHHHhhhHHHhhcc---hhhccCCCccEEeccCceEEecccccccccchhhhhhhHHHHHHHHhccH
Confidence            345888899999999999999999999   9999999999999999999999999999876544321   1122344444


Q ss_pred             CCC--CCCCCcccchhhHhHHHHHH
Q 044320           83 GTH--TQQLTEKSDIYGLGIACLYM  105 (176)
Q Consensus        83 ~~~--~~~~~~~~Dv~s~G~~l~~l  105 (176)
                      ++.  ...|+.+.||||.||++.|+
T Consensus       227 EiLMGaRhYs~AvDiWSVGCIFaEL  251 (449)
T KOG0664|consen  227 ELLMGARRYTGAVDIWSVGCIFAEL  251 (449)
T ss_pred             HHhhcchhhcCccceehhhHHHHHH
Confidence            443  67899999999999999987

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=1.7e-20  Score=138.71  Aligned_cols=124  Identities=19%  Similarity=0.219  Sum_probs=104.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~   82 (176)
                      +.+.|+++....+..+|..||.|||+++   ||+||+|.+|.++|.+|++|++|||+++..-..+  .....|++.+.+|
T Consensus       261 rer~FsE~RtRFYGaEIvsAL~YLHs~~---ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAP  337 (516)
T KOG0690|consen  261 RERVFSEDRTRFYGAEIVSALGYLHSRN---IVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAP  337 (516)
T ss_pred             hhhcccchhhhhhhHHHHHHhhhhhhCC---eeeeechhhhheeccCCceEeeecccchhcccccceeccccCChhhcCc
Confidence            4667999999999999999999999999   9999999999999999999999999998643322  2234566655554


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhccChHHHH-----------------------HHHHHHHhhcccCCCCC
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGLYSFEYLK-----------------------RFMSLALKYCEDETKAR  131 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~-----------------------~l~~l~~~~~~~~p~~R  131 (176)
                      + +....|+.+.|+|.+||++|||+.|..||..                       +...++...+..+|++|
T Consensus       338 EVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~ed~kFPr~ls~eAktLLsGLL~kdP~kR  410 (516)
T KOG0690|consen  338 EVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILMEDLKFPRTLSPEAKTLLSGLLKKDPKKR  410 (516)
T ss_pred             hhhccccccceeehhhhhHHHHHHHhccCcccccchhHHHHHHHhhhccCCccCCHHHHHHHHHHhhcChHhh
Confidence            4 4588999999999999999999999999853                       35667778888899998

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.81  E-value=1.5e-19  Score=128.09  Aligned_cols=123  Identities=32%  Similarity=0.465  Sum_probs=100.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-CCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-KFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ..+++..+..++.+++.++.++|+.+   ++|+|++|.||+++. .+.++++|||.+.......  .....+...+.+++
T Consensus        87 ~~~~~~~~~~~~~~l~~~l~~lh~~~---~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe  163 (215)
T cd00180          87 GKLSEDEILRILLQILEGLEYLHSNG---IIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPE  163 (215)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCCCccChh
Confidence            36889999999999999999999999   999999999999998 8999999999987665442  11122222233333


Q ss_pred             CC-CC-CCCcccchhhHhHHHHHHhccChHHHHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320           84 TH-TQ-QLTEKSDIYGLGIACLYMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus        84 ~~-~~-~~~~~~Dv~s~G~~l~~l~~~~~~~~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                      .. .. ..+.+.|+|++|++++++        ..+.+++..|+..+|.+||++.++++.
T Consensus       164 ~~~~~~~~~~~~D~~~lg~~~~~l--------~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         164 VLLGKGYYSEKSDIWSLGVILYEL--------PELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             HhcccCCCCchhhhHHHHHHHHHH--------HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence            32 33 677899999999999999        789999999999999999999998764

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.81  E-value=1.6e-21  Score=142.86  Aligned_cols=135  Identities=24%  Similarity=0.272  Sum_probs=112.5

Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceee
Q 044320            3 SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIV   80 (176)
Q Consensus         3 ~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~   80 (176)
                      +-++++|++.++..++...+.||+|||-..   -+|||||..|||+..+|..|+.|||++.-.....  .+...|++.++
T Consensus       120 R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~---KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWM  196 (502)
T KOG0574|consen  120 RARRKPLSEQEISAVLRDTLKGLQYLHDLK---KIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWM  196 (502)
T ss_pred             HHhcCCccHHHHHHHHHHHHhHHHHHHHHH---HHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCccccCcccc
Confidence            346788999999999999999999999988   9999999999999999999999999997654332  33445666555


Q ss_pred             ecC-CCCCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCCCC
Q 044320           81 VKG-THTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        81 ~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      +++ .....|..++|+||+|+...||..+.+|+                          ..++.++++.|+-..|++|-|
T Consensus       197 APEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~T  276 (502)
T KOG0574|consen  197 APEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKT  276 (502)
T ss_pred             cHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHHH
Confidence            544 45788999999999999999996666654                          456899999999999999999


Q ss_pred             HHHHHHH
Q 044320          134 MLEVARQ  140 (176)
Q Consensus       134 ~~~i~~~  140 (176)
                      +.++++.
T Consensus       277 A~~L~~H  283 (502)
T KOG0574|consen  277 ALRLCEH  283 (502)
T ss_pred             HHHHhhh
Confidence            8877653

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.81  E-value=2.4e-20  Score=146.67  Aligned_cols=132  Identities=18%  Similarity=0.192  Sum_probs=110.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecCCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKGTH   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~~~   85 (176)
                      .+..+.++..++.|+..+++|||+++   |+|||||.+|++++.+..+||+|||++..+..... ....|.+.+++|++.
T Consensus       150 gr~~e~~ar~~F~q~vsaveYcH~k~---ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~lqt~cgsppyAaPEl~  226 (596)
T KOG0586|consen  150 GRMKEKEARAKFRQIVSAVEYCHSKN---IVHRDLKAENILLDENMNIKIADFGFSTFFDYGLMLQTFCGSPPYAAPELF  226 (596)
T ss_pred             ccchhhhhhhhhHHHHHHHHHHhhcc---eeccccchhhcccccccceeeeccccceeecccccccccCCCCCccChHhh
Confidence            34555899999999999999999999   99999999999999999999999999988764432 234566677777776


Q ss_pred             -CC-CCCcccchhhHhHHHHHHhccChHHHH-----------------------HHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320           86 -TQ-QLTEKSDIYGLGIACLYMGLYSFEYLK-----------------------RFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus        86 -~~-~~~~~~Dv~s~G~~l~~l~~~~~~~~~-----------------------~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                       +. ..++..|+||+|+++|-+..+..||-+                       +..+++.+++-.+|.+|++++++.+.
T Consensus       227 ~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rvl~gk~rIp~~ms~dce~lLrk~lvl~Pskr~~~dqim~~  306 (596)
T KOG0586|consen  227 NGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRPRVLRGKYRIPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMKD  306 (596)
T ss_pred             cCcccCCcceehhhhhhhheeeeecccccCCcccccccchheeeeecccceeechhHHHHHHhhccCccccCCHHHhhhh
Confidence             33 346799999999999999998888853                       47889999999999999999988665


Q ss_pred             H
Q 044320          141 L  141 (176)
Q Consensus       141 l  141 (176)
                      -
T Consensus       307 ~  307 (596)
T KOG0586|consen  307 R  307 (596)
T ss_pred             c
Confidence            3

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.80  E-value=8e-20  Score=145.82  Aligned_cols=106  Identities=17%  Similarity=0.228  Sum_probs=88.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC--CCC--CeEEeecCCcccCCCCC-CCCcccccee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD--SKF--TPKVFDFEISRLAPVPN-INGVVGHVSI   79 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~--~~~--~~~l~dfg~~~~~~~~~-~~~~~~~~~~   79 (176)
                      +...|++.+.+.+..+++.||.|||.++   |+||||||.||++-  .+|  --||+|||.++...++. ....+|+..|
T Consensus       113 N~~GLpE~e~l~lL~d~~~al~~LrEn~---IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s~~~S~vGT~~Y  189 (732)
T KOG4250|consen  113 NAYGLPESEFLDLLSDLVSALRHLRENG---IVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNSLFTSLVGTEEY  189 (732)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHcC---ceeccCCCCcEEEeecCCCceEEeeecccccccCCCCCeeeeecCchhh
Confidence            4566999999999999999999999999   99999999999983  334  35999999999887665 3455677766


Q ss_pred             eecCCC--CCCCCcccchhhHhHHHHHHhccChHHH
Q 044320           80 VVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEYL  113 (176)
Q Consensus        80 ~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~  113 (176)
                      ..|...  .+.|+..+|.|||||++|++.||..||.
T Consensus       190 LhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~  225 (732)
T KOG4250|consen  190 LHPELYERQKKYTATVDLWSFGVTLYECATGELPFI  225 (732)
T ss_pred             cChHHHhhccCcCceeehhhhhhHHHHHhccCCCCC
Confidence            666554  4788999999999999999999998883

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.80  E-value=2.7e-20  Score=150.61  Aligned_cols=123  Identities=23%  Similarity=0.328  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---C--CCeEEeecCCcccCCCCC-----CCCccccceeeec
Q 044320           13 MRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS---K--FTPKVFDFEISRLAPVPN-----INGVVGHVSIVVK   82 (176)
Q Consensus        13 ~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~---~--~~~~l~dfg~~~~~~~~~-----~~~~~~~~~~~~~   82 (176)
                      ..+.+..|++.||+|||+.+   ||||||||.||||+.   +  ..++|+|||+++......     .....|..++.+|
T Consensus       607 ~~~~~l~q~~~GlaHLHsl~---iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~AP  683 (903)
T KOG1027|consen  607 DPISVLSQIASGLAHLHSLK---IVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAP  683 (903)
T ss_pred             cHHHHHHHHHHHHHHHHhcc---cccccCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCH
Confidence            45778899999999999999   999999999999965   3  468999999998865432     1223344444444


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhcc-ChHHH----------------------H--HHHHHHHhhcccCCCCCCCHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGLY-SFEYL----------------------K--RFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~~-~~~~~----------------------~--~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      + +....-+.+.|++|+||++||.+++ ..||-                      .  +..++|.+++..+|..||++.+
T Consensus       684 E~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NIl~~~~~L~~L~~~~d~eA~dLI~~ml~~dP~~RPsa~~  763 (903)
T KOG1027|consen  684 EQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILTGNYTLVHLEPLPDCEAKDLISRMLNPDPQLRPSATD  763 (903)
T ss_pred             HHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhhhcCccceeeeccCchHHHHHHHHHhcCCCcccCCCHHH
Confidence            4 3455556799999999999998776 44541                      1  5678999999999999999998


Q ss_pred             HH
Q 044320          137 VA  138 (176)
Q Consensus       137 i~  138 (176)
                      ++
T Consensus       764 VL  765 (903)
T KOG1027|consen  764 VL  765 (903)
T ss_pred             Hh
Confidence            84

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.80  E-value=1.6e-19  Score=123.70  Aligned_cols=97  Identities=18%  Similarity=0.247  Sum_probs=81.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--CccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~~   83 (176)
                      +..++.+.+..++.|+..||.|||+++   +.|||+||.|.++..+|.+|+.|||+++-.+.+-..  ...-+.|+.++.
T Consensus        95 ng~~d~~~~rsfmlqllrgl~fchshn---vlhrdlkpqnllin~ngelkladfglarafgipvrcysaevvtlwyrppd  171 (292)
T KOG0662|consen   95 NGDLDPEIVRSFMLQLLRGLGFCHSHN---VLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPD  171 (292)
T ss_pred             CCcCCHHHHHHHHHHHHhhhhhhhhhh---hhhccCCcceEEeccCCcEEecccchhhhcCCceEeeeceeeeeeccCcc
Confidence            456888999999999999999999999   999999999999999999999999999887765422  222334565555


Q ss_pred             CC--CCCCCcccchhhHhHHHHHH
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYM  105 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l  105 (176)
                      ..  ..-|+++.|+||-||++.|+
T Consensus       172 vlfgakly~tsidmwsagcifael  195 (292)
T KOG0662|consen  172 VLFGAKLYSTSIDMWSAGCIFAEL  195 (292)
T ss_pred             eeeeeehhccchHhhhcchHHHHH
Confidence            44  45689999999999999998

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.79  E-value=3.6e-19  Score=132.38  Aligned_cols=106  Identities=18%  Similarity=0.228  Sum_probs=91.1

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeee
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVV   81 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~   81 (176)
                      ++.++|+++.+..+..+|+.||.|||++|   |++||||.+|++++..|.+|++|+|.++..-.++  .....|++.+.+
T Consensus       343 qrqrklpeeharfys~ei~lal~flh~rg---iiyrdlkldnvlldaeghikltdygmcke~l~~gd~tstfcgtpnyia  419 (593)
T KOG0695|consen  343 QRQRKLPEEHARFYSAEICLALNFLHERG---IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIA  419 (593)
T ss_pred             hhhhcCcHHHhhhhhHHHHHHHHHHhhcC---eeeeeccccceEEccCCceeecccchhhcCCCCCcccccccCCCcccc
Confidence            35678999999999999999999999999   9999999999999999999999999987643332  233456666665


Q ss_pred             cCCC-CCCCCcccchhhHhHHHHHHhccChHH
Q 044320           82 KGTH-TQQLTEKSDIYGLGIACLYMGLYSFEY  112 (176)
Q Consensus        82 ~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~  112 (176)
                      |++. +..|+.+.|+|++|+++.||+.+..||
T Consensus       420 peilrgeeygfsvdwwalgvlmfemmagrspf  451 (593)
T KOG0695|consen  420 PEILRGEEYGFSVDWWALGVLMFEMMAGRSPF  451 (593)
T ss_pred             hhhhcccccCceehHHHHHHHHHHHHcCCCCc
Confidence            5554 888999999999999999999998887

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.78  E-value=4.4e-19  Score=130.85  Aligned_cols=132  Identities=20%  Similarity=0.271  Sum_probs=103.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC---CeEEeecCCcccCCC---------CCCCC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF---TPKVFDFEISRLAPV---------PNING   72 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~---~~~l~dfg~~~~~~~---------~~~~~   72 (176)
                      +++-|++.++.++..+|+.||.|||.+|   |.||||||+|||...-.   .+||+||.+...+..         +....
T Consensus       169 ~~~~F~E~EAs~vvkdia~aLdFlH~kg---IAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~t  245 (463)
T KOG0607|consen  169 KRKHFNEREASRVVKDIASALDFLHTKG---IAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLT  245 (463)
T ss_pred             HhhhccHHHHHHHHHHHHHHHHHHhhcC---cccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccC
Confidence            3456999999999999999999999999   99999999999986543   579999987654332         12223


Q ss_pred             ccccceeeecCCC------CCCCCcccchhhHhHHHHHHhccChHHHH--------------------------------
Q 044320           73 VVGHVSIVVKGTH------TQQLTEKSDIYGLGIACLYMGLYSFEYLK--------------------------------  114 (176)
Q Consensus        73 ~~~~~~~~~~~~~------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~--------------------------------  114 (176)
                      ..|...+++|+.-      ...|..+.|.||+|+++|-|+.|..||.+                                
T Consensus       246 PvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeF  325 (463)
T KOG0607|consen  246 PVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEF  325 (463)
T ss_pred             cccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcC
Confidence            3455556665542      45678899999999999999888887742                                


Q ss_pred             ----------HHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          115 ----------RFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       115 ----------~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                +..+++.+.+..++..|-++.+++.
T Consensus       326 PdkdWahIS~eakdlisnLlvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  326 PDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLN  360 (463)
T ss_pred             ChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccC
Confidence                      3677888888999999988887776

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=6.7e-19  Score=139.72  Aligned_cols=106  Identities=20%  Similarity=0.179  Sum_probs=83.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCC--CCCC-------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP--VPNI-------------   70 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~--~~~~-------------   70 (176)
                      ..-|.+..++.|+.++..|+++.|+.|   ||||||||+|||||.+|.+||+|||++..+.  .+..             
T Consensus       723 mgIFeE~LARFYIAEltcAiesVHkmG---FIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSm  799 (1034)
T KOG0608|consen  723 MGIFEEDLARFYIAELTCAIESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSM  799 (1034)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHhcc---ceecccCccceEEccCCceeeeeccccccceeccccccccCCCccccccC
Confidence            345889999999999999999999999   9999999999999999999999999985321  1000             


Q ss_pred             -----------------------------CCccccceeeec-CCCCCCCCcccchhhHhHHHHHHhccChHHHH
Q 044320           71 -----------------------------NGVVGHVSIVVK-GTHTQQLTEKSDIYGLGIACLYMGLYSFEYLK  114 (176)
Q Consensus        71 -----------------------------~~~~~~~~~~~~-~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~  114 (176)
                                                   ....|+..|.++ .+....++..+|+||.||+||||+.|..||..
T Consensus       800 ep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~  873 (1034)
T KOG0608|consen  800 EPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLA  873 (1034)
T ss_pred             CCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccC
Confidence                                         011233333333 33356788899999999999999999999853

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.77  E-value=6e-19  Score=143.57  Aligned_cols=131  Identities=23%  Similarity=0.284  Sum_probs=108.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC--CCCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP--NINGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~~~~   83 (176)
                      +.++.|+.+..|+++++.|+.|||...   ++|||+|-.|||++.++.+|++|||++.-....  ......|++++++++
T Consensus       117 g~rl~E~~IaYI~re~lrgl~HLH~nk---viHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPE  193 (953)
T KOG0587|consen  117 GNRLKEEWIAYILREILRGLAHLHNNK---VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPE  193 (953)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHhhcc---eeeecccCceEEEeccCcEEEeeeeeeeeeecccccccCcCCCcccccce
Confidence            667899999999999999999999988   999999999999999999999999987544322  233445666666555


Q ss_pred             CC------CCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCC
Q 044320           84 TH------TQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~~------~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~R  131 (176)
                      ..      ...|...+|+||+|++..||+.+.+|+                          .+++.++|..|+..|.++|
T Consensus       194 Viac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmraLF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~R  273 (953)
T KOG0587|consen  194 VIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQR  273 (953)
T ss_pred             eeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhhhhccCCCCCCccccchhhHHHHHHHHHHHHHhhccccC
Confidence            43      456778999999999999998777765                          3468899999999999999


Q ss_pred             CCHHHHHH
Q 044320          132 PSMLEVAR  139 (176)
Q Consensus       132 p~~~~i~~  139 (176)
                      |++.++++
T Consensus       274 P~~~~ll~  281 (953)
T KOG0587|consen  274 PSTEELLK  281 (953)
T ss_pred             cchhhhcc
Confidence            99887754

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.77  E-value=4e-18  Score=136.11  Aligned_cols=129  Identities=18%  Similarity=0.110  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CC--ccccceeeecCC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NG--VVGHVSIVVKGT   84 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~--~~~~~~~~~~~~   84 (176)
                      .+++..+..++.|++.||.|+|+.+   ++||||||+||+++.++.++++|||++........ ..  ......+.+|+.
T Consensus       305 ~~~~~~~~~i~~ql~~aL~~lH~~~---ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~  381 (507)
T PLN03224        305 KRDINVIKGVMRQVLTGLRKLHRIG---IVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEE  381 (507)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhh
Confidence            4678889999999999999999998   99999999999999999999999999865432211 11  111223333332


Q ss_pred             C-CC----------------------CCCcccchhhHhHHHHHHhccCh-HHH---------------------------
Q 044320           85 H-TQ----------------------QLTEKSDIYGLGIACLYMGLYSF-EYL---------------------------  113 (176)
Q Consensus        85 ~-~~----------------------~~~~~~Dv~s~G~~l~~l~~~~~-~~~---------------------------  113 (176)
                      . ..                      ....+.|+||+||++++|.++.. ++.                           
T Consensus       382 l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~  461 (507)
T PLN03224        382 LVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKY  461 (507)
T ss_pred             hcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCC
Confidence            2 11                      11234799999999999977543 211                           


Q ss_pred             ---------HHHHHHHHhhcccCC---CCCCCHHHHHH
Q 044320          114 ---------KRFMSLALKYCEDET---KARPSMLEVAR  139 (176)
Q Consensus       114 ---------~~l~~l~~~~~~~~p---~~Rp~~~~i~~  139 (176)
                               +...+++.+++..+|   .+|+|++++++
T Consensus       462 ~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~  499 (507)
T PLN03224        462 DFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALS  499 (507)
T ss_pred             CcccccccChHHHHHHHHHhccCCCCcccCCCHHHHhC
Confidence                     124567777777654   56888877764

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.76  E-value=2.1e-19  Score=139.69  Aligned_cols=105  Identities=16%  Similarity=0.121  Sum_probs=86.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-CCeEEeecCCcccCCCCCCCC-ccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEISRLAPVPNING-VVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~~   82 (176)
                      .+..|.++.+..|+.|+.-||..|-..+   |+|.||||+|||+.+. ..+||||||.+.....+..+. .....|.+|+
T Consensus       529 ~nvGL~ikaVRsYaqQLflALklLK~c~---vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~eneitPYLVSRFYRaPE  605 (752)
T KOG0670|consen  529 RNVGLHIKAVRSYAQQLFLALKLLKKCG---VLHADIKPDNILVNESKNILKLCDFGSASFASENEITPYLVSRFYRAPE  605 (752)
T ss_pred             cccceeehHHHHHHHHHHHHHHHHHhcC---eeecccCccceEeccCcceeeeccCccccccccccccHHHHHHhccCcc
Confidence            3456888899999999999999999999   9999999999999765 678999999998887776543 3344455556


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhccChHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGLYSFEY  112 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~  112 (176)
                      -+.+..|....|+||.||.|||+.+|..-|
T Consensus       606 IiLG~~yd~~iD~WSvgctLYElYtGkIlF  635 (752)
T KOG0670|consen  606 IILGLPYDYPIDTWSVGCTLYELYTGKILF  635 (752)
T ss_pred             eeecCcccCCccceeeceeeEEeeccceec
Confidence            666999999999999999999885554433

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.74  E-value=1.4e-19  Score=141.13  Aligned_cols=133  Identities=19%  Similarity=0.261  Sum_probs=106.7

Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC---CCeEEeecCCcccCCCCCCC-Cccccce
Q 044320            3 SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK---FTPKVFDFEISRLAPVPNIN-GVVGHVS   78 (176)
Q Consensus         3 ~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~---~~~~l~dfg~~~~~~~~~~~-~~~~~~~   78 (176)
                      +..+.+|++.....++.||+.||.|||-++   |+|+||||+|||+.+.   -.+|++|||+++..+..... ...|++.
T Consensus       655 SsEkgRL~er~TkFlvtQIL~ALr~LH~kn---IvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFRrsVVGTPA  731 (888)
T KOG4236|consen  655 SSEKGRLPERITKFLVTQILVALRYLHFKN---IVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFRRSVVGTPA  731 (888)
T ss_pred             HhhcccchHHHHHHHHHHHHHHHHHhhhcc---eeeccCCchheeeccCCCCCceeeccccceeecchhhhhhhhcCCcc
Confidence            346778999999999999999999999999   9999999999999654   36999999999998876643 4457776


Q ss_pred             eeecCC-CCCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           79 IVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        79 ~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      |.+|+. ....|+.+-|+||.|+++|--+.|..||                         .....++|...++..-++|.
T Consensus       732 YLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQIQNAaFMyPp~PW~eis~~AidlIn~LLqVkm~kRy  811 (888)
T KOG4236|consen  732 YLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQIQNAAFMYPPNPWSEISPEAIDLINNLLQVKMRKRY  811 (888)
T ss_pred             ccCHHHHhhccccccccceeeeEEEEEEecccccCCCccchhHHhhccccccCCCchhhcCHHHHHHHHHHHHHHHHHhc
Confidence            665554 5888999999999999988444433333                         23467889999999888998


Q ss_pred             CHHHHH
Q 044320          133 SMLEVA  138 (176)
Q Consensus       133 ~~~~i~  138 (176)
                      +.++.+
T Consensus       812 svdk~l  817 (888)
T KOG4236|consen  812 SVDKSL  817 (888)
T ss_pred             chHhhc
Confidence            877543

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.72  E-value=1.9e-17  Score=137.11  Aligned_cols=54  Identities=30%  Similarity=0.403  Sum_probs=51.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      ..+++..++.++.||+.||.|||..+   |+||||||+||+++.++.++|+|||+++
T Consensus        99 ~~l~~~~~~~i~~qil~aL~yLH~~g---IiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          99 GYFDEEMAVKYISEVALALDYLHRHG---IIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            45889999999999999999999998   9999999999999999999999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.71  E-value=1e-17  Score=121.23  Aligned_cols=125  Identities=21%  Similarity=0.260  Sum_probs=91.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe-CCC-CCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL-DSK-FTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~-~~~-~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      .+-+.-..+++.|+++||.|+|+++   +||||||.+|||+ +.+ ..+|++|||..+..+..-.....-..+-+++...
T Consensus       117 GigE~~~K~v~~ql~SAi~fMHskn---lVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~~~~~~~~y~~pe~~~  193 (378)
T KOG1345|consen  117 GIGEANTKKVFAQLLSAIEFMHSKN---LVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVKYLEYVNNYHAPELCD  193 (378)
T ss_pred             cccHHHHHHHHHHHHHHHHHhhccc---hhhcccccceEEEecCCccEEEeeecccccccCceehhhhhhcccCCcHHHh
Confidence            4667888999999999999999999   9999999999999 333 4899999998876443222111111122222221


Q ss_pred             -----CCCCCcccchhhHhHHHHHHhccChHHHH-------------------------------HHHHHHHhhcccCCC
Q 044320           86 -----TQQLTEKSDIYGLGIACLYMGLYSFEYLK-------------------------------RFMSLALKYCEDETK  129 (176)
Q Consensus        86 -----~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~-------------------------------~l~~l~~~~~~~~p~  129 (176)
                           .-...+.+|+|.||++++++++|..|+..                               .+..+.++.+..+++
T Consensus       194 ~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~~P~~F~~fs~~a~r~Fkk~lt~~~~  273 (378)
T KOG1345|consen  194 TVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNPALPKKFNPFSEKALRLFKKSLTPRFK  273 (378)
T ss_pred             hccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCccCchhhcccCHHHHHHHHHhcCCccc
Confidence                 22346789999999999999998888743                               366777888888888


Q ss_pred             CCCCHH
Q 044320          130 ARPSML  135 (176)
Q Consensus       130 ~Rp~~~  135 (176)
                      .|-...
T Consensus       274 drcki~  279 (378)
T KOG1345|consen  274 DRCKIW  279 (378)
T ss_pred             ccchhH
Confidence            884433

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.71  E-value=4.8e-18  Score=133.44  Aligned_cols=104  Identities=24%  Similarity=0.296  Sum_probs=89.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      ++++++.++..|+.|++.|+++||.++   |||||||-+|+.++.+|.+|++|||.+........-...|+..+++|+..
T Consensus       664 kp~m~E~eAk~IFkQV~agi~hlh~~~---ivhrdikdenvivd~~g~~klidfgsaa~~ksgpfd~f~gtv~~aapevl  740 (772)
T KOG1152|consen  664 KPRMDEPEAKLIFKQVVAGIKHLHDQG---IVHRDIKDENVIVDSNGFVKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVL  740 (772)
T ss_pred             cCccchHHHHHHHHHHHhccccccccC---ceecccccccEEEecCCeEEEeeccchhhhcCCCcceeeeeccccchhhh
Confidence            567899999999999999999999999   99999999999999999999999999876665555566788888888776


Q ss_pred             -CCCC-CcccchhhHhHHHHHHhccChHH
Q 044320           86 -TQQL-TEKSDIYGLGIACLYMGLYSFEY  112 (176)
Q Consensus        86 -~~~~-~~~~Dv~s~G~~l~~l~~~~~~~  112 (176)
                       +..| +...|+|++|++||.+.....||
T Consensus       741 ~g~~y~gk~qdiwalgillytivykenpy  769 (772)
T KOG1152|consen  741 GGEKYLGKPQDIWALGILLYTIVYKENPY  769 (772)
T ss_pred             CCCccCCCcchhhhhhheeeEEEeccCCC
Confidence             3333 67899999999999887776665

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.69  E-value=3e-17  Score=119.19  Aligned_cols=141  Identities=13%  Similarity=0.190  Sum_probs=103.6

Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeee
Q 044320            2 TSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVV   81 (176)
Q Consensus         2 ~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~   81 (176)
                      +...+..++-.++.+++.+++.|++|||+. ++-+..-.|.+..+++|++.+.+++--.....+...+..+  ...|..+
T Consensus       279 he~t~vvvd~sqav~faldiargmaflhsl-ep~ipr~~lns~hvmidedltarismad~kfsfqe~gr~y--~pawmsp  355 (448)
T KOG0195|consen  279 HEQTSVVVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQEVGRAY--SPAWMSP  355 (448)
T ss_pred             hcCccEEEecchHHHHHHHHHhhHHHHhhc-chhhhhhhcccceEEecchhhhheecccceeeeecccccc--CcccCCH
Confidence            444555677889999999999999999997 5545566799999999999887776322222222222222  2233333


Q ss_pred             cCCCCC---CCCcccchhhHhHHHHHHhccChHHHH-------------------------HHHHHHHhhcccCCCCCCC
Q 044320           82 KGTHTQ---QLTEKSDIYGLGIACLYMGLYSFEYLK-------------------------RFMSLALKYCEDETKARPS  133 (176)
Q Consensus        82 ~~~~~~---~~~~~~Dv~s~G~~l~~l~~~~~~~~~-------------------------~l~~l~~~~~~~~p~~Rp~  133 (176)
                      +.+...   ..-.++|+|||++++||+.+...||.+                         ....++..|+..||.+||.
T Consensus       356 ealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmkialeglrv~ippgis~hm~klm~icmnedpgkrpk  435 (448)
T KOG0195|consen  356 EALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKIALEGLRVHIPPGISRHMNKLMNICMNEDPGKRPK  435 (448)
T ss_pred             HHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhhhhccccccCCCCccHHHHHHHHHHhcCCCCcCCC
Confidence            333211   123579999999999999998888853                         4788999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 044320          134 MLEVARQLENIS  145 (176)
Q Consensus       134 ~~~i~~~l~~~~  145 (176)
                      |..|+..|++++
T Consensus       436 fdmivpilekm~  447 (448)
T KOG0195|consen  436 FDMIVPILEKMI  447 (448)
T ss_pred             cceehhhHHHhc
Confidence            999999999875

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.64  E-value=6.5e-16  Score=111.08  Aligned_cols=103  Identities=22%  Similarity=0.239  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC---CCCccccceeeecCC-
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN---INGVVGHVSIVVKGT-   84 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~~~-   84 (176)
                      +++..+..++.+++.++.++|+.+   ++|+|+++.|++++.++.++++|||.+.......   .....+...+.+++. 
T Consensus        95 ~~~~~~~~~~~~l~~~l~~lh~~~---i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~  171 (225)
T smart00221       95 LSEEEARFYLRQILEALEYLHSLG---IVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVL  171 (225)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHhHh
Confidence            889999999999999999999998   9999999999999999999999999887765432   111122222333332 


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChHHHH
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFEYLK  114 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~  114 (176)
                       ....++.++|+|++|++++++.++..+|..
T Consensus       172 ~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      172 LGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             cCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence             456677799999999999999999999966

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.62  E-value=5.4e-16  Score=123.65  Aligned_cols=129  Identities=22%  Similarity=0.300  Sum_probs=105.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC--CCCCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP--NINGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~~~~~   84 (176)
                      .+|++.++..+.++...|++|+|+++   =+|||+|-.||++++.|.+|+.|||.+-.+...  ......|++++.+++.
T Consensus       107 gplselqiayvcRetl~gl~ylhs~g---k~hRdiKGanilltd~gDvklaDfgvsaqitati~KrksfiGtpywmapEv  183 (829)
T KOG0576|consen  107 GPLSELQIAYVCRETLQGLKYLHSQG---KIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKRKSFIGTPYWMAPEV  183 (829)
T ss_pred             ccchhHHHHHHHhhhhccchhhhcCC---cccccccccceeecccCceeecccCchhhhhhhhhhhhcccCCccccchhH
Confidence            46888899999999999999999999   999999999999999999999999987654432  2334567777777665


Q ss_pred             C----CCCCCcccchhhHhHHHHHHhccCh----------------------------HHHHHHHHHHHhhcccCCCCCC
Q 044320           85 H----TQQLTEKSDIYGLGIACLYMGLYSF----------------------------EYLKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        85 ~----~~~~~~~~Dv~s~G~~l~~l~~~~~----------------------------~~~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      .    .+.|...+|+|+.|+...|+..-.+                            .+.+.+.++++.++..+|++||
T Consensus       184 aaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~altknpKkRp  263 (829)
T KOG0576|consen  184 AAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGALTKNPKKRP  263 (829)
T ss_pred             HHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHHhhccCCCCCcccCCccchHHHHHHHHHHhcCCCccCC
Confidence            4    6789999999999998777632222                            2345688999999999999999


Q ss_pred             CHHHHH
Q 044320          133 SMLEVA  138 (176)
Q Consensus       133 ~~~~i~  138 (176)
                      +++.++
T Consensus       264 taeklL  269 (829)
T KOG0576|consen  264 TAEKLL  269 (829)
T ss_pred             Chhhhe
Confidence            988654

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.58  E-value=4.4e-14  Score=107.86  Aligned_cols=140  Identities=19%  Similarity=0.166  Sum_probs=105.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-----CCeEEeecCCcccCC--CCC---------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-----FTPKVFDFEISRLAP--VPN---------   69 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-----~~~~l~dfg~~~~~~--~~~---------   69 (176)
                      .+.|+..++..++.|+..+|+++|+.|   ++||||||.|++++..     ..+.+.|||+++...  ...         
T Consensus       116 ~~~fs~~T~l~ia~q~l~~l~~lH~~G---~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~  192 (322)
T KOG1164|consen  116 PGRFSRKTVLRIAIQNLNALEDLHSKG---FIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRP  192 (322)
T ss_pred             CCCcCHhHHHHHHHHHHHHHHHHHhcC---cccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCC
Confidence            478999999999999999999999999   9999999999999765     368999999998322  111         


Q ss_pred             -CCCccccceeeecCCC-CCCCCcccchhhHhHHHHHHhccChHHH----------------------------HHHHHH
Q 044320           70 -INGVVGHVSIVVKGTH-TQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------KRFMSL  119 (176)
Q Consensus        70 -~~~~~~~~~~~~~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------~~l~~l  119 (176)
                       .....|+..+.....+ +...+.+.|+||++.++.++..+..||.                            ..+.++
T Consensus       193 ~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (322)
T KOG1164|consen  193 QKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEKDPRKLLTDRFGDLKPEEFAKI  272 (322)
T ss_pred             CccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHHHhhhhccccccCCChHHHHHH
Confidence             1112244444444433 6677889999999999999977765542                            234455


Q ss_pred             HHhhcccCCCCCCCHHHHHHHHHhhhhcC
Q 044320          120 ALKYCEDETKARPSMLEVARQLENISSML  148 (176)
Q Consensus       120 ~~~~~~~~p~~Rp~~~~i~~~l~~~~~~~  148 (176)
                      ...+-..+...+|....+...|.......
T Consensus       273 ~~~~~~~~~~~~Pdy~~~~~~l~~~~~~~  301 (322)
T KOG1164|consen  273 LEYIDSLDYEDKPDYEKLAELLKDVFDSE  301 (322)
T ss_pred             HHHhhccCCcCCCCHHHHHHHHHHHHHhc
Confidence            55555678888999998888887776654

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=4.3e-15  Score=121.13  Aligned_cols=129  Identities=19%  Similarity=0.278  Sum_probs=101.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC------CCCccccceeee
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN------INGVVGHVSIVV   81 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~------~~~~~~~~~~~~   81 (176)
                      .++..++--++.|+..|++|+|..|   +.|||+|++|+++..+|.+|++|||.+.....+.      ..+..|...+.+
T Consensus       416 ~~~~~e~~c~fKqL~~Gv~y~h~~G---iahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~a  492 (601)
T KOG0590|consen  416 KLTPLEADCFFKQLLRGVKYLHSMG---LAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLA  492 (601)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHhcC---ceeccCccccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcC
Confidence            5788889999999999999999999   9999999999999999999999999987654322      123344443433


Q ss_pred             cCC-CCCCCCc-ccchhhHhHHHHHHhccChHHH--------------------------------HHHHHHHHhhcccC
Q 044320           82 KGT-HTQQLTE-KSDIYGLGIACLYMGLYSFEYL--------------------------------KRFMSLALKYCEDE  127 (176)
Q Consensus        82 ~~~-~~~~~~~-~~Dv~s~G~~l~~l~~~~~~~~--------------------------------~~l~~l~~~~~~~~  127 (176)
                      |+. ....|.+ ..||||.|+++..|.++..+|-                                .+-+.++-++++.+
T Consensus       493 pE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~  572 (601)
T KOG0590|consen  493 PEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLD  572 (601)
T ss_pred             cccccccccCcchhhhhhccceEEEEecCCCccccccccccchhhhccccccccccChHHHHHhchhhHHHHHHHHccCC
Confidence            443 4555544 6999999999888866665542                                23567889999999


Q ss_pred             CCCCCCHHHHHH
Q 044320          128 TKARPSMLEVAR  139 (176)
Q Consensus       128 p~~Rp~~~~i~~  139 (176)
                      |.+|.++++|++
T Consensus       573 P~~R~ti~~i~~  584 (601)
T KOG0590|consen  573 PTKRITIEQILN  584 (601)
T ss_pred             hhheecHHHHhh
Confidence            999999999875

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.57  E-value=1.9e-14  Score=109.46  Aligned_cols=124  Identities=22%  Similarity=0.167  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe--CCC--CCeEEeecCCcccCCCCC--------CCCcccc
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL--DSK--FTPKVFDFEISRLAPVPN--------INGVVGH   76 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~--~~~--~~~~l~dfg~~~~~~~~~--------~~~~~~~   76 (176)
                      .+.....-++.|+.+|+.|||++|   +.|||+|++||++  +++  -.+.++|||++--....+        .-...|.
T Consensus       338 ~s~r~~~~~laQlLEav~hL~~hg---vAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGN  414 (598)
T KOG4158|consen  338 RSYRTGRVILAQLLEAVTHLHKHG---VAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGN  414 (598)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHcc---chhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCc
Confidence            455667788999999999999999   9999999999998  333  367899999874322211        1112233


Q ss_pred             ceeeecCCCCCCC-------CcccchhhHhHHHHHHhccChHHHH-------------------------HHHHHHHhhc
Q 044320           77 VSIVVKGTHTQQL-------TEKSDIYGLGIACLYMGLYSFEYLK-------------------------RFMSLALKYC  124 (176)
Q Consensus        77 ~~~~~~~~~~~~~-------~~~~Dv~s~G~~l~~l~~~~~~~~~-------------------------~l~~l~~~~~  124 (176)
                      ....+|+..+...       -.++|.|+.|-+.||+.....||.+                         .+++++...+
T Consensus       415 a~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~Yqe~qLPalp~~vpp~~rqlV~~lL  494 (598)
T KOG4158|consen  415 AKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRTYQESQLPALPSRVPPVARQLVFDLL  494 (598)
T ss_pred             ceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhhhhhhhCCCCcccCChHHHHHHHHHh
Confidence            3444444432211       2489999999999999888888865                         3789999999


Q ss_pred             ccCCCCCCCHH
Q 044320          125 EDETKARPSML  135 (176)
Q Consensus       125 ~~~p~~Rp~~~  135 (176)
                      +.+|.+|++..
T Consensus       495 ~r~pskRvsp~  505 (598)
T KOG4158|consen  495 KRDPSKRVSPN  505 (598)
T ss_pred             cCCccccCCcc
Confidence            99999998855

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.56  E-value=3.2e-15  Score=113.48  Aligned_cols=54  Identities=31%  Similarity=0.428  Sum_probs=49.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-CCeEEeecCCcc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEISR   63 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-~~~~l~dfg~~~   63 (176)
                      ..++..++..+++.+..||.++|+.|   |||||+||.|++.+.. +.-.|+|||++.
T Consensus       127 ~~l~~~~i~~Yl~~ll~Al~~~h~~G---IvHRDiKpsNFL~n~~t~rg~LvDFgLA~  181 (418)
T KOG1167|consen  127 RSLSLAEIRWYLRNLLKALAHLHKNG---IVHRDIKPSNFLYNRRTQRGVLVDFGLAQ  181 (418)
T ss_pred             hcCCHHHHHHHHHHHHHHhhhhhccC---ccccCCCccccccccccCCceEEechhHH
Confidence            35788999999999999999999999   9999999999999764 677899999987

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.55  E-value=1.4e-15  Score=113.01  Aligned_cols=117  Identities=21%  Similarity=0.155  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC-----
Q 044320           11 LAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH-----   85 (176)
Q Consensus        11 ~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~-----   85 (176)
                      ....+.+..|+...++++|++|   ++|+||+|+|++++.+|.+.|+||+.....+..... ......+.+|+..     
T Consensus       144 ~~arl~lT~Q~I~lvA~Lh~~G---lVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~-~~~~~~~~PPe~~~~~~~  219 (288)
T PF14531_consen  144 FAARLSLTVQMIRLVANLHSYG---LVHGDIKPENFLLDQDGGVFLGDFSSLVRAGTRYRC-SEFPVAFTPPELESCAGQ  219 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT---EEEST-SGGGEEE-TTS-EEE--GGGEEETTEEEEG-GGS-TTTS-HHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc---eEecccceeeEEEcCCCCEEEcChHHHeecCceeec-cCCCcccCChhhhhhhcc
Confidence            3344556689999999999999   999999999999999999999999876554433221 1111223333222     


Q ss_pred             ----CCCCCcccchhhHhHHHHHHhccChHH-------------------HHHHHHHHHhhcccCCCCC
Q 044320           86 ----TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------LKRFMSLALKYCEDETKAR  131 (176)
Q Consensus        86 ----~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------~~~l~~l~~~~~~~~p~~R  131 (176)
                          ...++.+.|.|++|+++|.+..+..||                   ++.++.+|..+++.+|.+|
T Consensus       220 ~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~~~~~f~~C~~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  220 FGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEADPEWDFSRCRDMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             CHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGSTSGGGGTTSS---HHHHHHHHHHT-SSGGGS
T ss_pred             cCcccceeeeccCHHHHHHHHHHHHHccCCCCCCCccccccccchhcCCcCHHHHHHHHHHccCCcccC
Confidence                234678999999999999985555543                   5678889999999888876

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.53  E-value=5.8e-14  Score=108.75  Aligned_cols=43  Identities=37%  Similarity=0.468  Sum_probs=38.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD   49 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~   49 (176)
                      .-+.++...+..|++|++.||.|||++-  .|||.||||+|||+.
T Consensus       180 ~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~  222 (590)
T KOG1290|consen  180 NYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLC  222 (590)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeee
Confidence            4467899999999999999999999853  299999999999984

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.52  E-value=3e-14  Score=119.28  Aligned_cols=130  Identities=19%  Similarity=0.157  Sum_probs=97.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC--CCCCC------ccc-cce
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV--PNING------VVG-HVS   78 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~--~~~~~------~~~-~~~   78 (176)
                      -|+.-+.+.|+.|+..||..||+.|   +.|+|||.+|||+++-+++.++||...+.-.-  .++..      +.+ ...
T Consensus       116 FL~~iEKkWiaFQLL~al~qcH~~g---VcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtC  192 (1431)
T KOG1240|consen  116 FLVLIEKKWIAFQLLKALSQCHKLG---VCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTC  192 (1431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC---ccccccccceEEEeeechhhhhcccccCCccCCCCCcccceEEEecCCceee
Confidence            3677788999999999999999999   99999999999999999999999987654221  11110      000 011


Q ss_pred             eeecCCC-----------CCC-CCcccchhhHhHHHHHHhccC-hHHH------------------------HHHHHHHH
Q 044320           79 IVVKGTH-----------TQQ-LTEKSDIYGLGIACLYMGLYS-FEYL------------------------KRFMSLAL  121 (176)
Q Consensus        79 ~~~~~~~-----------~~~-~~~~~Dv~s~G~~l~~l~~~~-~~~~------------------------~~l~~l~~  121 (176)
                      +.+|+.+           ... .+++-||||.||++.|+.+.. ++|-                        ..++.++.
T Consensus       193 YiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQL~aYr~~~~~~~e~~Le~Ied~~~Rnlil  272 (1431)
T KOG1240|consen  193 YIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQLLAYRSGNADDPEQLLEKIEDVSLRNLIL  272 (1431)
T ss_pred             ecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHHHHhHhccCccCHHHHHHhCcCccHHHHHH
Confidence            2222221           122 577899999999999996653 3331                        13788999


Q ss_pred             hhcccCCCCCCCHHHHHHH
Q 044320          122 KYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       122 ~~~~~~p~~Rp~~~~i~~~  140 (176)
                      .|++.||.+|.++++.++.
T Consensus       273 ~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  273 SMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             HHHccCchhccCHHHHHHh
Confidence            9999999999999999887

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.48  E-value=5.7e-13  Score=99.30  Aligned_cols=142  Identities=19%  Similarity=0.251  Sum_probs=108.0

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-----CCeEEeecCCcccCCCCCCC-------
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-----FTPKVFDFEISRLAPVPNIN-------   71 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-----~~~~l~dfg~~~~~~~~~~~-------   71 (176)
                      -.++.|+.+++..+|.|+..-++|+|++.   +|.|||||+|+||..-     ..+.++|||+++.+.++...       
T Consensus       116 ~CgR~FSvKTV~miA~Qmi~rie~vH~k~---LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE  192 (449)
T KOG1165|consen  116 LCGRRFSVKTVAMIAKQMITRIEYVHEKD---LIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYRE  192 (449)
T ss_pred             HhcCcccHHhHHHHHHHHHHHHHHHHhcc---eeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCcccc
Confidence            35788999999999999999999999998   9999999999999643     35899999999987765432       


Q ss_pred             --CccccceeeecCCC-CCCCCcccchhhHhHHHHHHhccChHHHH-------------------------------HHH
Q 044320           72 --GVVGHVSIVVKGTH-TQQLTEKSDIYGLGIACLYMGLYSFEYLK-------------------------------RFM  117 (176)
Q Consensus        72 --~~~~~~~~~~~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~-------------------------------~l~  117 (176)
                        ...|++.++...++ +.+-+...|+-|+|.++.+.+-|+.||..                               ++.
T Consensus       193 ~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKIGe~Kr~T~i~~Lc~g~P~efa  272 (449)
T KOG1165|consen  193 HKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKIGETKRSTPIEVLCEGFPEEFA  272 (449)
T ss_pred             ccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHhccccccCCHHHHHhcCHHHHH
Confidence              23455556555544 66778899999999999998888877732                               333


Q ss_pred             HHHHhhcccCCCCCCCHHHHHHHHHhhhhcC
Q 044320          118 SLALKYCEDETKARPSMLEVARQLENISSML  148 (176)
Q Consensus       118 ~l~~~~~~~~p~~Rp~~~~i~~~l~~~~~~~  148 (176)
                      ..+.-.-..+-.+-|..+-+-..+..+.+..
T Consensus       273 ~Yl~yvR~L~F~E~PDYdylr~Lf~dvldr~  303 (449)
T KOG1165|consen  273 TYLRYVRRLDFFETPDYDYLRKLFDDVLDRL  303 (449)
T ss_pred             HHHHHHHhcCcccCCCHHHHHHHHHHHHHhc
Confidence            3444344456667788777777777666654

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=4e-14  Score=110.52  Aligned_cols=127  Identities=25%  Similarity=0.357  Sum_probs=99.1

Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--------CCCcc
Q 044320            3 SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--------INGVV   74 (176)
Q Consensus         3 ~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--------~~~~~   74 (176)
                      ++....-++.....++.|++.|+.|   ++   .+|+|+||.||+...+..+++.|||+...+....        .+...
T Consensus       350 r~~~e~~s~s~~~~~~~q~~~~~~y---k~---~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~  423 (516)
T KOG1033|consen  350 RRTGEERSLSLMLDIFKQIAPAVEY---KG---LIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKDETVAPAAASHTQQV  423 (516)
T ss_pred             CCcccccchhHHHHHHHhhccchhh---cc---chhhhccccccccccchhhhhhhhhheeecccCCcccchhhhhhhcc
Confidence            4556668888999999999999999   77   9999999999999888899999999987655433        22345


Q ss_pred             ccceeeec-CCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------HH---HHHHHHHhhcccCCCCC
Q 044320           75 GHVSIVVK-GTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------LK---RFMSLALKYCEDETKAR  131 (176)
Q Consensus        75 ~~~~~~~~-~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------~~---~l~~l~~~~~~~~p~~R  131 (176)
                      |..+|+.| .+.++.|+.++|+||+|++++|++. ....+                  ..   .-..++++++...|.+|
T Consensus       424 gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er~~t~~d~r~g~ip~~~~~d~p~e~~ll~~lls~~p~~R  503 (516)
T KOG1033|consen  424 GTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFERIATLTDIRDGIIPPEFLQDYPEEYTLLQQLLSPSPEER  503 (516)
T ss_pred             cccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHHHHhhhhhhcCCCChHHhhcCcHHHHHHHHhcCCCcccC
Confidence            56666644 4558999999999999999999965 22221                  11   23468899999999999


Q ss_pred             CCHH
Q 044320          132 PSML  135 (176)
Q Consensus       132 p~~~  135 (176)
                      |++.
T Consensus       504 P~~~  507 (516)
T KOG1033|consen  504 PSAI  507 (516)
T ss_pred             chHH
Confidence            9543

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.46  E-value=1.5e-13  Score=108.40  Aligned_cols=139  Identities=22%  Similarity=0.286  Sum_probs=100.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC-----CCCCccccceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP-----NINGVVGHVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~-----~~~~~~~~~~~~~   81 (176)
                      ..+++.=...+..+++.||+|+|.-.  ...|+.+++.|++++.+..+|++|||+.......     .........|.+|
T Consensus        43 ~~~d~~F~~s~~rdi~~Gl~ylh~s~--i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aP  120 (484)
T KOG1023|consen   43 IKLDYFFILSFIRDISKGLAYLHNSP--IGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAP  120 (484)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHhcCc--ceeeeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCH
Confidence            44566666778899999999999743  2399999999999999999999999998765421     0111111122222


Q ss_pred             cCCC----C---CCCCcccchhhHhHHHHHHhccChHHH----------------------------------HHHHHHH
Q 044320           82 KGTH----T---QQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------------KRFMSLA  120 (176)
Q Consensus        82 ~~~~----~---~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------------~~l~~l~  120 (176)
                      +...    .   ...+.+.|+||||++++|+.....+|.                                  +.+..++
T Consensus       121 ellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~  200 (484)
T KOG1023|consen  121 ELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKKGGSNPFRPSIELLNELPPELLLLV  200 (484)
T ss_pred             HHhcccccccccccccccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHhcCCCCcCcchhhhhhcchHHHHHH
Confidence            2211    1   125778999999999999855444432                                  2467789


Q ss_pred             HhhcccCCCCCCCHHHHHHHHHhhhhc
Q 044320          121 LKYCEDETKARPSMLEVARQLENISSM  147 (176)
Q Consensus       121 ~~~~~~~p~~Rp~~~~i~~~l~~~~~~  147 (176)
                      ..||..+|..||++..+-..++.+...
T Consensus       201 ~~cw~e~P~~rPs~~~i~~~~~~~~~~  227 (484)
T KOG1023|consen  201 ARCWEEIPEKRPSIEQIRSKLLTINKG  227 (484)
T ss_pred             HHhcccChhhCccHHHHHhhhhhhccc
Confidence            999999999999999999888876654

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.44  E-value=3.9e-13  Score=96.27  Aligned_cols=105  Identities=20%  Similarity=0.295  Sum_probs=80.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC---CCeEEeecCCcccCCCCCCC---------C
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK---FTPKVFDFEISRLAPVPNIN---------G   72 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~---~~~~l~dfg~~~~~~~~~~~---------~   72 (176)
                      ..+.|+.++++-+|-|+..-++|+|.++   ++||||||+|.|..-+   ..+.++|||+++.+.+....         .
T Consensus       104 C~R~ftmkTvLMLaDQml~RiEyvH~r~---fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~  180 (341)
T KOG1163|consen  104 CSRRFTMKTVLMLADQMLSRIEYVHLRN---FIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRN  180 (341)
T ss_pred             HhhhhhHHhHHHHHHHHHHHHHHHHhhc---cccccCCccceeeccccccceEEEEeccchhhhccccccccCccccCCc
Confidence            3567999999999999999999999999   9999999999998644   46889999999886544322         1


Q ss_pred             ccccceeeecCCC-CCCCCcccchhhHhHHHHHHhccChHH
Q 044320           73 VVGHVSIVVKGTH-TQQLTEKSDIYGLGIACLYMGLYSFEY  112 (176)
Q Consensus        73 ~~~~~~~~~~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~  112 (176)
                      ..|++.++..... +..-+...|+-|+|.++.+..-+..||
T Consensus       181 ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPW  221 (341)
T KOG1163|consen  181 LTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPW  221 (341)
T ss_pred             cceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcc
Confidence            2344444433332 455577899999999998876666665

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.38  E-value=3.1e-13  Score=107.45  Aligned_cols=105  Identities=18%  Similarity=0.076  Sum_probs=87.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT   84 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~   84 (176)
                      ....+++.....+..+++-++.++|+.+   ++|||+|++||+++.+|.+++.|||.++..-.....  .|...+.+++.
T Consensus        90 ~~~~f~~~~~~~~~aelaLald~lh~l~---iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~--cgt~eymApEI  164 (612)
T KOG0603|consen   90 KEVMFDELDVAFYLAELALALDHLHKLG---IAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIA--CGTYEYRAPEI  164 (612)
T ss_pred             cCCchHHHHHHHHHHHHHHHHhhcchhH---HHHhcccccceeecccCccccCCchhhhHhHhhhhc--ccchhhhhhHh
Confidence            4556788889999999999999999999   999999999999999999999999998875433332  44555666665


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHHHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEYLKR  115 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~~  115 (176)
                      .. ....+.|.||||++.++++++..+|..+
T Consensus       165 ~~-gh~~a~D~ws~gvl~felltg~~pf~~~  194 (612)
T KOG0603|consen  165 IN-GHLSAADWWSFGVLAFELLTGTLPFGGD  194 (612)
T ss_pred             hh-ccCCcccchhhhhhHHHHhhCCCCCchH
Confidence            54 5678999999999999999999888664

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.35  E-value=8.2e-13  Score=110.41  Aligned_cols=91  Identities=22%  Similarity=0.288  Sum_probs=71.2

Q ss_pred             HHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-----------------CCCccccceeeecC
Q 044320           21 LAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-----------------INGVVGHVSIVVKG   83 (176)
Q Consensus        21 i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-----------------~~~~~~~~~~~~~~   83 (176)
                      ++.+++|+|..+   |+|||+||+|.+|+.-|.+|++|||+.+..-...                 ..+..|++.|-+++
T Consensus       152 mvla~Eylh~yg---ivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPe  228 (1205)
T KOG0606|consen  152 MVLAVEYLHSYG---IVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPE  228 (1205)
T ss_pred             hhHHhHhhccCC---eecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChh
Confidence            378899999999   9999999999999999999999999987532111                 12334555554444


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHHHH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEYLK  114 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~  114 (176)
                       ..-+.|+...|+|++|+++|+.+.+..+|..
T Consensus       229 VilrqgygkpvdwwamGiIlyeFLVgcvpffG  260 (1205)
T KOG0606|consen  229 VILRQGYGKPVDWWAMGIILYEFLVGCVPFFG  260 (1205)
T ss_pred             hhhhhccCCCccHHHHHHHHHHHheeeeeccC
Confidence             4477899999999999999999877777643

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.31  E-value=5e-12  Score=94.63  Aligned_cols=101  Identities=30%  Similarity=0.376  Sum_probs=80.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-CeEEeecCCcccCCCCC--------CCCccccce
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF-TPKVFDFEISRLAPVPN--------INGVVGHVS   78 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~-~~~l~dfg~~~~~~~~~--------~~~~~~~~~   78 (176)
                      .++......++.|++.++.|+|+.+   ++|||+||.|++++..+ .++++|||.++......        .....+...
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~H~~~---~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~  173 (384)
T COG0515          97 PLSESEALFILAQILSALEYLHSKG---IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPG  173 (384)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccc
Confidence            6889999999999999999999999   99999999999999988 79999999987544332        123344455


Q ss_pred             eeecCCC-C---CCCCcccchhhHhHHHHHHhccChH
Q 044320           79 IVVKGTH-T---QQLTEKSDIYGLGIACLYMGLYSFE  111 (176)
Q Consensus        79 ~~~~~~~-~---~~~~~~~Dv~s~G~~l~~l~~~~~~  111 (176)
                      +.+++.. .   .......|+||+|++++++..+..|
T Consensus       174 ~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p  210 (384)
T COG0515         174 YMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPP  210 (384)
T ss_pred             cCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCC
Confidence            5555544 3   4788899999999999887665544

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.31  E-value=4.1e-12  Score=89.98  Aligned_cols=57  Identities=16%  Similarity=0.096  Sum_probs=51.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHH-hcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYL-HTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP   66 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~l-h~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~   66 (176)
                      ...++.+++..++.|++.+|.++ |+.+   ++|||+||.||+++ ++.++++|||++....
T Consensus       111 ~~~~~~~~~~~i~~qi~~~L~~l~H~~g---iiHrDlkP~NIli~-~~~v~LiDFG~a~~~~  168 (190)
T cd05147         111 DAPLSESKARELYLQVIQIMRILYQDCR---LVHADLSEYNLLYH-DGKLYIIDVSQSVEHD  168 (190)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEE-CCcEEEEEccccccCC
Confidence            35688999999999999999999 7888   99999999999998 4789999999986543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.28  E-value=9.2e-12  Score=88.21  Aligned_cols=57  Identities=14%  Similarity=0.098  Sum_probs=51.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV   67 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~   67 (176)
                      ..++..++..++.|++.++.++|+ .|   ++|||+||.||+++ ++.++++|||++.....
T Consensus       112 ~~~~~~~~~~i~~~l~~~l~~lH~~~g---ivHrDlkP~NIll~-~~~~~liDFG~a~~~~~  169 (190)
T cd05145         112 VPLEEEEAEELYEQVVEQMRRLYQEAG---LVHGDLSEYNILYH-DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHhCC---EecCCCChhhEEEE-CCCEEEEEcccceecCC
Confidence            457788999999999999999999 99   99999999999998 78999999999876554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.21  E-value=4.4e-12  Score=91.74  Aligned_cols=74  Identities=16%  Similarity=0.170  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCCCCCCCcccchh
Q 044320           17 IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHTQQLTEKSDIY   96 (176)
Q Consensus        17 i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~   96 (176)
                      ...+++.++..+|..|   ++|+|++|.|++++.++ ++++|||.............         ......+..++|+|
T Consensus       140 ~~~~i~~~l~~lH~~g---i~H~Dikp~Nili~~~g-i~liDfg~~~~~~e~~a~d~---------~vler~y~~~~di~  206 (232)
T PRK10359        140 VKAKIKASIESLHQHG---MVSGDPHKGNFIVSKNG-LRIIDLSGKRCTAQRKAKDR---------IDLERHYGIKNEIK  206 (232)
T ss_pred             HHHHHHHHHHHHHHcC---CccCCCChHHEEEeCCC-EEEEECCCcccccchhhHHH---------HHHHhHhccccccc
Confidence            4669999999999999   99999999999999888 99999998765432221111         11133455789999


Q ss_pred             hHhHHHH
Q 044320           97 GLGIACL  103 (176)
Q Consensus        97 s~G~~l~  103 (176)
                      +||+.+.
T Consensus       207 ~lg~~~~  213 (232)
T PRK10359        207 DLGYYLL  213 (232)
T ss_pred             ceeEeeh
Confidence            9999764

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.12  E-value=1.1e-10  Score=90.15  Aligned_cols=51  Identities=22%  Similarity=0.229  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCeEecCC-CCCCeEeCCCCCeEEeecCCcccCCCC
Q 044320           15 LHIALGLAEGILYLHTEADPPIIHWDI-KATNTLLDSKFTPKVFDFEISRLAPVP   68 (176)
Q Consensus        15 ~~i~~~i~~~l~~lh~~~~~~~vH~dl-~~~nil~~~~~~~~l~dfg~~~~~~~~   68 (176)
                      ..++.+++.+|.|||+.+   ++|||| ||.||+++.++.++|+|||+++.....
T Consensus       114 ~~~~~~i~~aL~~lH~~g---IiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~  165 (365)
T PRK09188        114 PAWFRSAHRALRDLHRAG---ITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRR  165 (365)
T ss_pred             HHHHHHHHHHHHHHHHCC---CeeCCCCCcceEEEcCCCCEEEEECccceecccC
Confidence            568899999999999999   999999 999999998999999999999865443

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.07  E-value=3e-10  Score=81.01  Aligned_cols=94  Identities=14%  Similarity=0.063  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCeEecCC-CCCCeEeCCCCCeEEeecCCcccCCCCCCC----C------c-cccceeeec
Q 044320           15 LHIALGLAEGILYLHTEADPPIIHWDI-KATNTLLDSKFTPKVFDFEISRLAPVPNIN----G------V-VGHVSIVVK   82 (176)
Q Consensus        15 ~~i~~~i~~~l~~lh~~~~~~~vH~dl-~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~------~-~~~~~~~~~   82 (176)
                      ..++.|++.+|.++|++|   ++|||| ||.||+++.++.++|+|||++.........    .      . .....+.+.
T Consensus        94 ~~~~~qi~~~L~~lH~~G---IvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~  170 (218)
T PRK12274         94 LAYFRAARRLLQQLHRCG---VAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPA  170 (218)
T ss_pred             HHHHHHHHHHHHHHHHCc---CccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCC
Confidence            467889999999999999   999999 799999999999999999999754433210    0      0 001111111


Q ss_pred             CCC-------CCCCCcccchhhHhHHHHHHhccChH
Q 044320           83 GTH-------TQQLTEKSDIYGLGIACLYMGLYSFE  111 (176)
Q Consensus        83 ~~~-------~~~~~~~~Dv~s~G~~l~~l~~~~~~  111 (176)
                      .+.       ...--...++++.|+-+|.+.|+..+
T Consensus       171 ~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~  206 (218)
T PRK12274        171 ALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVL  206 (218)
T ss_pred             CCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCC
Confidence            111       11112456778888888888776543

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.94  E-value=3.3e-09  Score=76.05  Aligned_cols=48  Identities=23%  Similarity=0.355  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           13 MRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        13 ~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      +...++.+++.+|.++|..+   ++|+|++|.||+++ ++.++++|||.+..
T Consensus        96 ~~~~i~~~i~~~l~~lH~~~---i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         96 EELELSREIGRLVGKLHSAG---IIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             HHHHHHHHHHHHHHHHHhCC---cccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            56789999999999999999   99999999999998 78899999998754

>smart00090 RIO RIO-like kinase

Probab=98.94  E-value=2.3e-09  Score=78.55  Aligned_cols=57  Identities=16%  Similarity=0.120  Sum_probs=48.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP   66 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~   66 (176)
                      ..+...++..++.|++.++.++|.++.  ++|+|+||+||+++ ++.++++|||.+....
T Consensus       143 ~~~~~~~~~~i~~qi~~~l~~LH~~g~--iiH~Dikp~NIli~-~~~i~LiDFg~a~~~~  199 (237)
T smart00090      143 VEPEEEEEFELYDDILEEMRKLYKEGE--LVHGDLSEYNILVH-DGKVVIIDVSQSVELD  199 (237)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHhcCC--EEeCCCChhhEEEE-CCCEEEEEChhhhccC
Confidence            345666788999999999999998753  99999999999998 7889999999876533

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.94  E-value=6.3e-09  Score=88.17  Aligned_cols=103  Identities=19%  Similarity=0.140  Sum_probs=76.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-------CCCeEEeecCCcccCCCCCCC----Cc
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-------KFTPKVFDFEISRLAPVPNIN----GV   73 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-------~~~~~l~dfg~~~~~~~~~~~----~~   73 (176)
                      ..+..++.-++.++.|++.-+++||+.+   |||+||||+|.++..       +..++|+|||.+--+..-...    +.
T Consensus       787 ~~~~m~e~lv~~~~~qml~ive~lH~~~---IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~  863 (974)
T KOG1166|consen  787 TNKVMDEYLVMFFSCQMLRIVEHLHAMG---IIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDGTKFKAV  863 (974)
T ss_pred             cCCCCCchhhhHHHHHHHHHHHHHHhcc---eecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCCCcEEeee
Confidence            3556788899999999999999999999   999999999999942       346899999987544321111    11


Q ss_pred             ccccee-eecCCCCCCCCcccchhhHhHHHHHHhccCh
Q 044320           74 VGHVSI-VVKGTHTQQLTEKSDIYGLGIACLYMGLYSF  110 (176)
Q Consensus        74 ~~~~~~-~~~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~  110 (176)
                      .+.-.+ .++...+..++.+.|.|.++-+++-|+.|.+
T Consensus       864 ~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  864 WHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             eccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence            111111 2344558889999999999999988866544

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.90  E-value=1.1e-09  Score=81.99  Aligned_cols=134  Identities=19%  Similarity=0.218  Sum_probs=90.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC------CCCCccccc
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP------NINGVVGHV   77 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~------~~~~~~~~~   77 (176)
                      +..+.+......++..||..||.|||+. .|+++|+++-.+.+++..+|.+|+..-........-      ......+..
T Consensus       168 ~~~~a~~~~~wkkw~tqIlsal~yLhs~-~PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~  246 (458)
T KOG1266|consen  168 KNQKALFQKAWKKWCTQILSALSYLHSC-DPPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLP  246 (458)
T ss_pred             HhhhhhhHHHHHHHHHHHHhhhhhhhcc-CCccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCC
Confidence            4456678888999999999999999998 899999999999999998888887643222111110      011111222


Q ss_pred             eeeecC-CCCCCCCcccchhhHhHHHHHHhccChH--------HH-------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           78 SIVVKG-THTQQLTEKSDIYGLGIACLYMGLYSFE--------YL-------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        78 ~~~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~--------~~-------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++..+. -..-..+.++|||+||....+|..+...        ..             +.-+.++.+|++.+|..||++.
T Consensus       247 g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEiq~tnseS~~~~ee~ia~~i~~len~lqr~~i~kcl~~eP~~rp~ar  326 (458)
T KOG1266|consen  247 GFSAPESGTTTNTTGASDIYKFGMCALEMAILEIQSTNSESKVEVEENIANVIIGLENGLQRGSITKCLEGEPNGRPDAR  326 (458)
T ss_pred             ccccCCcCcccccccchhhhhhhHHHHHHHHheeccCCCcceeehhhhhhhheeeccCccccCcCcccccCCCCCCcchh
Confidence            222222 2233456789999999888887332211        00             1135688999999999999998


Q ss_pred             HHH
Q 044320          136 EVA  138 (176)
Q Consensus       136 ~i~  138 (176)
                      +++
T Consensus       327 ~ll  329 (458)
T KOG1266|consen  327 LLL  329 (458)
T ss_pred             hhh
Confidence            764

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.88  E-value=3.8e-09  Score=75.21  Aligned_cols=52  Identities=19%  Similarity=0.146  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCC
Q 044320           12 AMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP   66 (176)
Q Consensus        12 ~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~   66 (176)
                      .....++.+++.++.++|..+   ++|+|++|.||+++.++.++++|||.+....
T Consensus       125 ~~~~~~~~~i~~~l~~lh~~g---i~H~Dl~p~Nill~~~~~~~liDfg~~~~~~  176 (198)
T cd05144         125 EDPEEVLDEILEEIVKAYKHG---IIHGDLSEFNILVDDDEKIYIIDWPQMVSTD  176 (198)
T ss_pred             ccHHHHHHHHHHHHHHHHHCC---CCcCCCCcccEEEcCCCcEEEEECCccccCC
Confidence            345678899999999999999   9999999999999999999999999886544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.85  E-value=4.1e-09  Score=77.32  Aligned_cols=45  Identities=27%  Similarity=0.318  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           17 IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        17 i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      .+.+++.+|.++|..|   ++|+||||.||+++.++.++++|||.+..
T Consensus       147 ~~~~i~~~l~~lH~~G---I~HrDlkp~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        147 QWQAIGQLIARFHDAG---VYHADLNAHNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             HHHHHHHHHHHHHHCC---CCCCCCCchhEEEcCCCCEEEEECCCccc
Confidence            3578999999999999   99999999999999888999999998765

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.85  E-value=7.7e-09  Score=84.23  Aligned_cols=47  Identities=19%  Similarity=0.325  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           14 RLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        14 ~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      ...++.+++.+|.++|+.+   ++|||+||+||++ .++.++++|||+++.
T Consensus       430 ~~~~~~~i~~~L~~lH~~g---iiHrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        430 NPELVRKVGEIVAKLHKAG---IVHGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             HHHHHHHHHHHHHHHHhCC---CccCCCChHHEEE-ECCcEEEEeCccccc
Confidence            5678999999999999999   9999999999999 677899999999865

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.85  E-value=4.7e-09  Score=73.84  Aligned_cols=52  Identities=15%  Similarity=0.057  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC
Q 044320           12 AMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV   67 (176)
Q Consensus        12 ~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~   67 (176)
                      .++..++.+++.++.++|. .+   ++|+|++|+||+++ ++.++++|||.+.....
T Consensus       114 ~~~~~~~~~~~~~l~~lh~~~~---ivH~Dl~p~Nili~-~~~~~liDfg~a~~~~~  166 (187)
T cd05119         114 EDPEELYDQILELMRKLYREAG---LVHGDLSEYNILVD-DGKVYIIDVPQAVEIDH  166 (187)
T ss_pred             ccHHHHHHHHHHHHHHHhhccC---cCcCCCChhhEEEE-CCcEEEEECcccccccC
Confidence            5678899999999999999 88   99999999999999 88999999999876544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.78  E-value=3.8e-08  Score=69.91  Aligned_cols=45  Identities=18%  Similarity=0.321  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           16 HIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        16 ~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      .++.+++.+|.++|+.+   ++|+|++|.|++++ ++.++++|||.+..
T Consensus        94 ~~~~~i~~~l~~lH~~g---i~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        94 ELLREIGRLVGKLHKAG---IVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             HHHHHHHHHHHHHHHCC---eecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            78999999999999999   99999999999998 78999999998755

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK10345 hypothetical protein; Provisional

Probab=98.73  E-value=2.1e-08  Score=72.05  Aligned_cols=49  Identities=20%  Similarity=0.202  Sum_probs=38.7

Q ss_pred             CCHHHHHHHHHHHHHHH-HHHhcCCCCCeEecCCCCCCeEeCC----CCCeEEeecCCc
Q 044320            9 VSLAMRLHIALGLAEGI-LYLHTEADPPIIHWDIKATNTLLDS----KFTPKVFDFEIS   62 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l-~~lh~~~~~~~vH~dl~~~nil~~~----~~~~~l~dfg~~   62 (176)
                      +++.  ..++.+++.++ +|||+++   |+||||||+||+++.    +..++|+|++.+
T Consensus       103 ~~e~--~~~~~~~L~~l~~yLh~~~---IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345        103 YEED--VAQLRQLLKKLKRYLLDNR---IVTMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             ccHh--HHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence            4444  35677888777 9999999   999999999999974    347999995433

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.67  E-value=3e-07  Score=71.56  Aligned_cols=139  Identities=15%  Similarity=0.152  Sum_probs=103.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCC-CCCCCCccccceeeecCCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP-VPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~-~~~~~~~~~~~~~~~~~~~   85 (176)
                      .-.+|.-.+++++.++.+.+-+|..|   .+-+|+.++|+|+++.+.+.+.|-....... ........|...+.+++..
T Consensus       112 P~~~w~fllrvaRnlA~aFA~lH~~G---h~vGDVn~~~~lVsd~~~V~LVdsDsfqi~~ng~~~~cpVg~~eftPPElQ  188 (637)
T COG4248         112 PHCAWDFLLRVARNLASAFATLHEHG---HVVGDVNQNSFLVSDDSKVVLVDSDSFQINANGTLHLCPVGVSEFTPPELQ  188 (637)
T ss_pred             CccccHHHHHHHHHHHHHHHHHHhcC---CcccccCccceeeecCceEEEEcccceeeccCCceEecccCccccCCHHHh
Confidence            34789999999999999999999999   9999999999999999999998754332221 1112223444555555554


Q ss_pred             ------CCCCCcccchhhHhHHHHHHhcc-ChHHH--------------------------------------------H
Q 044320           86 ------TQQLTEKSDIYGLGIACLYMGLY-SFEYL--------------------------------------------K  114 (176)
Q Consensus        86 ------~~~~~~~~Dv~s~G~~l~~l~~~-~~~~~--------------------------------------------~  114 (176)
                            +..-+...|.|.+|+++.+++.+ ..||.                                            .
T Consensus       189 ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g~f~ya~~~~~g~~p~P~~~P~~~Lpp  268 (637)
T COG4248         189 TLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAHGRFAYASDQRRGLKPPPRSIPLSMLPP  268 (637)
T ss_pred             ccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhcceeeechhccCCCCCCCCCCChhhcCH
Confidence                  34456789999999999988655 44442                                            2


Q ss_pred             HHHHHHHhhcccC--CCCCCCHHHHHHHHHhhhhcC
Q 044320          115 RFMSLALKYCEDE--TKARPSMLEVARQLENISSML  148 (176)
Q Consensus       115 ~l~~l~~~~~~~~--p~~Rp~~~~i~~~l~~~~~~~  148 (176)
                      .++.+..+|+...  +.-||+.+..+..|..+...+
T Consensus       269 ~vqAlF~qaF~~~~~~~~RP~a~aW~aAl~al~~~L  304 (637)
T COG4248         269 DVQALFQQAFTESGVATPRPTAKAWVAALDALRQQL  304 (637)
T ss_pred             HHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHhh
Confidence            3777888888764  568999999988888877765

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.60  E-value=6e-09  Score=85.51  Aligned_cols=128  Identities=22%  Similarity=0.236  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHh-cCCCCCeEecCCCCCCeEeCCCC-CeEEeecCCcccCCC-CCCC----Cccc-ccee
Q 044320            8 SVSLAMRLHIALGLAEGILYLH-TEADPPIIHWDIKATNTLLDSKF-TPKVFDFEISRLAPV-PNIN----GVVG-HVSI   79 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh-~~~~~~~vH~dl~~~nil~~~~~-~~~l~dfg~~~~~~~-~~~~----~~~~-~~~~   79 (176)
                      ..+...+-.++.|+..++.|+| ..+   +.|+|++|+|.+++.++ .++..|||++..... .+..    ...| ...+
T Consensus       119 ~~~~~~~~~~~~ql~s~l~~~H~~~~---~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y  195 (601)
T KOG0590|consen  119 GTSSSSASRYLPQLNSGLSYLHPENG---VTHRDIKPSNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPY  195 (601)
T ss_pred             CCCCcchhhhhhhhccCccccCcccc---cccCCCCCccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCC
Confidence            3455677889999999999999 888   99999999999999999 999999999987665 3322    2233 4444


Q ss_pred             eecCCCC--CCCCcccchhhHhHHHHHHhccChHHH----------------------------HHHHHHHHhhcccCCC
Q 044320           80 VVKGTHT--QQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------KRFMSLALKYCEDETK  129 (176)
Q Consensus        80 ~~~~~~~--~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------~~l~~l~~~~~~~~p~  129 (176)
                      .+++...  .......|+||.|+++.-+.++..++.                            ....++..+++..+|.
T Consensus       196 ~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~l~~~~~  275 (601)
T KOG0590|consen  196 GAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGRFTQLPWNSISDQAHDLLHKILKENPS  275 (601)
T ss_pred             CCcccccchhhcCCCcccccccccccccccCCCCccccccccccceeecccccccccCccccCChhhhhcccccccCCch
Confidence            4444432  245778999999999988866665542                            1356677777778888


Q ss_pred             CCCCHHHHH
Q 044320          130 ARPSMLEVA  138 (176)
Q Consensus       130 ~Rp~~~~i~  138 (176)
                      .|.+..++.
T Consensus       276 ~r~s~~~~~  284 (601)
T KOG0590|consen  276 NRLSIEELK  284 (601)
T ss_pred             hcccccccc
Confidence            888877553

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.52  E-value=3.6e-07  Score=61.25  Aligned_cols=55  Identities=27%  Similarity=0.226  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           10 SLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        10 ~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      +......++.+++.+++++|......++|+|++|.|++++..+.++++|||.+..
T Consensus        84 ~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          84 SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            4567788899999999999985333499999999999999889999999998753

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.44  E-value=5.5e-07  Score=63.92  Aligned_cols=56  Identities=13%  Similarity=-0.007  Sum_probs=46.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHH-hcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC
Q 044320            8 SVSLAMRLHIALGLAEGILYL-HTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV   67 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~l-h~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~   67 (176)
                      .++.++...+..+++.+|..+ |..+   ++|+||++.||+++ ++.+.++|||.+-...+
T Consensus       120 ~~~~~~~~~i~~~i~~~l~~l~H~~g---lVHGDLs~~NIL~~-~~~v~iIDF~qav~~~h  176 (197)
T cd05146         120 KLNDEEMKNAYYQVLSMMKQLYKECN---LVHADLSEYNMLWH-DGKVWFIDVSQSVEPTH  176 (197)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEE-CCcEEEEECCCceeCCC
Confidence            345566778889999999998 8888   99999999999996 46799999997755443

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.33  E-value=2.6e-07  Score=75.23  Aligned_cols=118  Identities=19%  Similarity=0.241  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCc-----------cccceeee-cCCC
Q 044320           18 ALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV-----------VGHVSIVV-KGTH   85 (176)
Q Consensus        18 ~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~-----------~~~~~~~~-~~~~   85 (176)
                      +.+++.|+.|+|...  .+||+++.|++|.++.++..|++.|+++-....+..+-.           .....+.+ +...
T Consensus       105 l~~v~dgl~flh~sA--k~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  105 LGNVADGLAFLHRSA--KVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             hhcccchhhhhccCc--ceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhc
Confidence            456678999999753  399999999999999999999999987644332111100           01111222 2222


Q ss_pred             CCCCCcccchhhHhHHHHHHh----------------------------ccChHHHHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           86 TQQLTEKSDIYGLGIACLYMG----------------------------LYSFEYLKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        86 ~~~~~~~~Dv~s~G~~l~~l~----------------------------~~~~~~~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      ....+.++|++|+|+++|.+.                            ..+...+.++.+-+.+.+..+...||++..+
T Consensus       183 ~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~~~~~~~~~~~s~~~p~el~~~l~k~l~~~~~~rp~~~~l  262 (700)
T KOG2137|consen  183 GTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSRNLLNAGAFGYSNNLPSELRESLKKLLNGDSAVRPTLDLL  262 (700)
T ss_pred             cccccccccceeeeeEEEEEecCCcchhhccCCcchhhhhhcccccccccccccCcHHHHHHHHHHhcCCcccCcchhhh
Confidence            444577999999999887552                            1112235678899999999999999966544

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.33  E-value=4.2e-07  Score=72.67  Aligned_cols=136  Identities=18%  Similarity=0.138  Sum_probs=94.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-CCeEEeecCCcccCCCCCCCCcccccee--eecC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEISRLAPVPNINGVVGHVSI--VVKG   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-~~~~l~dfg~~~~~~~~~~~~~~~~~~~--~~~~   83 (176)
                      ..++++..+++..|++.++.++|+..   ++|+|++|+||++..+ +..++.|||+..........-......+  ....
T Consensus       361 ~~~d~~~~~~~~~q~~~~l~~i~s~~---~~~~d~~psni~i~~~~~~~~~~~~~~~t~~~~~~~~~~~~~r~~p~~~~~  437 (524)
T KOG0601|consen  361 QMLDEDPRLRLTAQILTALNVIHSKL---FVHLDVKPSNILISNDGFFSKLGDFGCWTRLAFSSGVFHHIDRLYPIAEIL  437 (524)
T ss_pred             HhcCcchhhhhHHHHHhccccccchh---hhcccccccceeeccchhhhhccccccccccceecccccccccccccchhh
Confidence            34677788999999999999999998   9999999999999775 7889999998764322211111111112  2222


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccCh--------------------HHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHh
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSF--------------------EYLKRFMSLALKYCEDETKARPSMLEVARQLEN  143 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~--------------------~~~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~~  143 (176)
                      .....+..+.|++|||.-..+..++..                    .....+..+.+.....+++.||.+.++....+.
T Consensus       438 ~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~~~~i~~~~~p~~~~~~~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~  517 (524)
T KOG0601|consen  438 LEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQSLTIRSGDTPNLPGLKLQLQVLLKVMINPDRKRRPSAVELSLHSEF  517 (524)
T ss_pred             ccccccccccccccccccccccccCcccCcccccceeeecccccCCCchHHhhhhhhhhhcCCccccchhhhhhcccchh
Confidence            235567789999999976665422211                    122667778888888999999998877655544


Q ss_pred             hh
Q 044320          144 IS  145 (176)
Q Consensus       144 ~~  145 (176)
                      ..
T Consensus       518 ~~  519 (524)
T KOG0601|consen  518 YR  519 (524)
T ss_pred             hh
Confidence            33

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.28  E-value=7.3e-07  Score=71.31  Aligned_cols=126  Identities=21%  Similarity=0.205  Sum_probs=96.6

Q ss_pred             CCHHHHHHHHHHHHH----HHHHHhcCCCCCeEecCCCCCCeEeCCC-CCeEEeecCCcccCCCCCCCC-------cccc
Q 044320            9 VSLAMRLHIALGLAE----GILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEISRLAPVPNING-------VVGH   76 (176)
Q Consensus         9 l~~~~~~~i~~~i~~----~l~~lh~~~~~~~vH~dl~~~nil~~~~-~~~~l~dfg~~~~~~~~~~~~-------~~~~   76 (176)
                      ++.+.++.+..+...    |+.++|...   ++|-|++|.|+....+ ..++++|||+...+.......       ..+.
T Consensus       215 ~p~~~l~~~~~~~~~~~~~al~~~hs~~---~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~  291 (524)
T KOG0601|consen  215 LPDNLLWNSLRDWLSRDVTALSHLHSNN---IVHDDLKPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGD  291 (524)
T ss_pred             CCchhhhhHHhhhhhcccccccccCCCc---ccccccchhheecccccceeecCCcceeEEccCCccccceeeeecCCCC
Confidence            667778888888888    999999998   9999999999999998 889999999887665544211       1333


Q ss_pred             ceeeecCCCCCCCCcccchhhHhHHHHHHhccCh--------------------HHH----HHHHHHHHhhcccCCCCCC
Q 044320           77 VSIVVKGTHTQQLTEKSDIYGLGIACLYMGLYSF--------------------EYL----KRFMSLALKYCEDETKARP  132 (176)
Q Consensus        77 ~~~~~~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~--------------------~~~----~~l~~l~~~~~~~~p~~Rp  132 (176)
                      .-|+.++....-++..+|+|++|.+..+..++..                    .|.    ..+...+..++..++..|+
T Consensus       292 ~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~  371 (524)
T KOG0601|consen  292 CIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRL  371 (524)
T ss_pred             ceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCchhhhcCcchhhhhHHHHhcCcchhhhh
Confidence            4566777778888999999999999887633221                    111    2355678889999999999


Q ss_pred             CHHHH
Q 044320          133 SMLEV  137 (176)
Q Consensus       133 ~~~~i  137 (176)
                      +.+.+
T Consensus       372 ~~q~~  376 (524)
T KOG0601|consen  372 TAQIL  376 (524)
T ss_pred             HHHHH
Confidence            97754

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.26  E-value=2e-06  Score=59.34  Aligned_cols=48  Identities=25%  Similarity=0.171  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHhcCC--CCCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           15 LHIALGLAEGILYLHTEA--DPPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        15 ~~i~~~i~~~l~~lh~~~--~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      ..++.+++.+|+.||+.+  ...++|+|+++.||+++ ++.++++||+.+.
T Consensus        86 ~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~  135 (170)
T cd05151          86 PENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAG  135 (170)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEeccccc
Confidence            346789999999999886  22359999999999998 6679999999764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.12  E-value=6.7e-06  Score=61.32  Aligned_cols=54  Identities=17%  Similarity=0.198  Sum_probs=46.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-------CCCeEEeecCCccc
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-------KFTPKVFDFEISRL   64 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-------~~~~~l~dfg~~~~   64 (176)
                      ..+......++.+++..+.-||..|   ++|+|+++.||+++.       +..+.++||+.++.
T Consensus       134 ~~~~~~~~~ll~~la~~i~~LH~~G---i~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        134 PPDPRLKRMLIKRVATMVRDMHAAG---INHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCc---CccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            3455677789999999999999999   999999999999974       46789999997753

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.07  E-value=7.2e-06  Score=58.83  Aligned_cols=53  Identities=26%  Similarity=0.322  Sum_probs=46.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC---CeEEeecCCccc
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF---TPKVFDFEISRL   64 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~---~~~l~dfg~~~~   64 (176)
                      ++......++.+++..++-||..|   ++|+|+++.|||++.+.   .+.++||+-++.
T Consensus       115 ~~~~~~~~ll~~l~~~i~~lH~~g---i~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  115 LDPSQRRELLRALARLIAKLHDAG---IYHGDLNPSNILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHCc---CCCCCCCcccEEEeCCCCceeEEEEcchhcee
Confidence            456677889999999999999999   99999999999998876   889999987654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.06  E-value=1.1e-05  Score=64.42  Aligned_cols=49  Identities=18%  Similarity=0.138  Sum_probs=41.5

Q ss_pred             HHHHHHHHH-HHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCC
Q 044320           15 LHIALGLAE-GILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP   66 (176)
Q Consensus        15 ~~i~~~i~~-~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~   66 (176)
                      ..++.+++. .+..+|..|   ++|+|++|.||+++.++.++++|||++....
T Consensus       259 ~~ia~~~~~~~l~ql~~~g---~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       259 KALAENLARSFLNQVLRDG---FFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             HHHHHHHHHHHHHHHHhCC---ceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence            456666655 468889999   9999999999999999999999999987654

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=97.93  E-value=9e-05  Score=60.71  Aligned_cols=94  Identities=12%  Similarity=-0.027  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecCCCCC
Q 044320           11 LAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKGTHTQ   87 (176)
Q Consensus        11 ~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~~~~~   87 (176)
                      ...+-.-+.||+.||.|||. .+   ++|+++.-..|+++..|.-||++|.+.........  ........+..|... .
T Consensus       103 ~~~v~~Gl~qIl~AL~FL~~d~~---lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~-~  178 (690)
T KOG1243|consen  103 KEEVCLGLFQILAALSFLNDDCN---LVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEI-D  178 (690)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCC---eeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhc-C
Confidence            34455667899999999984 44   99999999999999999999999987654332221  000000001111100 0


Q ss_pred             CCCcccchhhHhHHHHHHhcc
Q 044320           88 QLTEKSDIYGLGIACLYMGLY  108 (176)
Q Consensus        88 ~~~~~~Dv~s~G~~l~~l~~~  108 (176)
                      .-....|.|-||++++++..+
T Consensus       179 ~s~~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  179 PSEWSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             ccccchhhhhHHHHHHHHhCc
Confidence            111356999999999999766

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.90  E-value=3.2e-05  Score=54.14  Aligned_cols=46  Identities=20%  Similarity=0.295  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           15 LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        15 ~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      ..++..+-.-+.-||..+   |+|+||-++|+.+...+ +.++|||+++.
T Consensus        95 ~~~~r~vG~~vg~lH~~g---ivHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          95 PDLLREVGRLVGKLHKAG---IVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             hHHHHHHHHHHHHHHhcC---eecCCCccceEEEeCCc-EEEEECCcccc
Confidence            356777888889999999   99999999999997765 89999999865

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.75  E-value=9.3e-05  Score=52.32  Aligned_cols=51  Identities=24%  Similarity=0.308  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHH-HhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCC
Q 044320           12 AMRLHIALGLAEGILY-LHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP   66 (176)
Q Consensus        12 ~~~~~i~~~i~~~l~~-lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~   66 (176)
                      ++...++.++...+.. +|..|   ++|+||.+.||+++.+ .+.++|||.+....
T Consensus       106 ~~~~~~~~~il~~~~~~~~~~g---ivHGDLs~~NIlv~~~-~~~iIDf~qav~~~  157 (188)
T PF01163_consen  106 EEPKELLEEILEEIIKMLHKAG---IVHGDLSEYNILVDDG-KVYIIDFGQAVDSS  157 (188)
T ss_dssp             STHHHHHHHHHHHHHHHHHCTT---EEESS-STTSEEEETT-CEEE--GTTEEETT
T ss_pred             hhHHHHHHHHHHHHHHHHHhcC---ceecCCChhhEEeecc-eEEEEecCcceecC
Confidence            3456677788775555 57888   9999999999999887 89999999775443

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PRK09902 hypothetical protein; Provisional

Probab=97.72  E-value=9e-05  Score=53.14  Aligned_cols=54  Identities=17%  Similarity=0.087  Sum_probs=46.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCC--eEEeecCCccc
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFT--PKVFDFEISRL   64 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~--~~l~dfg~~~~   64 (176)
                      +.+..+...++.+++..++-||..|   +.|+|+-+.||+++..+.  +.++||.-++.
T Consensus       124 ~~~~~~k~~il~~va~~ia~LH~~G---v~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        124 PYSDEVRQAMLKAVALAFKKMHSVN---RQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            4566677899999999999999999   999999999999986666  89999976543

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=97.69  E-value=0.00077  Score=54.22  Aligned_cols=87  Identities=10%  Similarity=0.123  Sum_probs=67.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT   84 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~   84 (176)
                      .+...+++..|-|+.|+..||.++|+.|   +..+-|.+.+|+++++.+++++..|...........             
T Consensus       386 ~~~~~~e~~lW~y~~QLtaaL~sIHssG---LAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d~~~-------------  449 (655)
T KOG3741|consen  386 QNLKAPEEVLWSYISQLTAALYSIHSSG---LACKTLDLKKILVTGKMRIRISGCGIMDVLQEDPTE-------------  449 (655)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhcC---ceeecccHhHeEeeCcceEEEecccceeeecCCCCc-------------
Confidence            3566889999999999999999999999   999999999999999989999887766544333210             


Q ss_pred             CCCCCCcccchhhHhHHHHHHhcc
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLY  108 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~  108 (176)
                       ...--.+-|.-.||.++.-+.++
T Consensus       450 -~le~~Qq~D~~~lG~ll~aLAt~  472 (655)
T KOG3741|consen  450 -PLESQQQNDLRDLGLLLLALATG  472 (655)
T ss_pred             -chhHHhhhhHHHHHHHHHHHhhc
Confidence             01112356788888888877665

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=97.66  E-value=0.00016  Score=50.73  Aligned_cols=49  Identities=37%  Similarity=0.466  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC---CeEEeecCCcccCC
Q 044320           15 LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF---TPKVFDFEISRLAP   66 (176)
Q Consensus        15 ~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~---~~~l~dfg~~~~~~   66 (176)
                      ..++..+-..+.-||...   ++|+||-.+||++..++   .+.++|||++....
T Consensus       116 ~~~~~~iG~~igklH~nd---iiHGDLTTSNill~~~~~~~~~~lIdfgls~~s~  167 (229)
T KOG3087|consen  116 AELARRIGELIGKLHDND---IIHGDLTTSNILLRSDGNQITPILIDFGLSSVSR  167 (229)
T ss_pred             HHHHHHHHHHHHHhhhCC---eecccccccceEEecCCCcCceEEEeecchhccc
Confidence            678888999999999988   99999999999996554   45899999986543

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.64  E-value=4.1e-05  Score=65.55  Aligned_cols=124  Identities=15%  Similarity=0.084  Sum_probs=88.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC----------C---------
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP----------N---------   69 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~----------~---------   69 (176)
                      .+.+-...+...+..+.++||...   ++|+|++|.+.+....+..++.+|+..+.....          .         
T Consensus       901 ~saepaRs~i~~~vqs~e~L~s~~---r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~  977 (1205)
T KOG0606|consen  901 LSAEPARSPILERVQSLESLHSSL---RKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSR  977 (1205)
T ss_pred             cccccccchhHHHHhhhhccccch---hhcccccccchhhcccCCcccCccccccccccccCcCCcccccccCccccccc
Confidence            455566677888899999999987   999999999999999999999999844321100          0         


Q ss_pred             --------------CCCccccce-eeecCCCCCCCCcccchhhHhHHHHHHhccChHHHH--------------------
Q 044320           70 --------------INGVVGHVS-IVVKGTHTQQLTEKSDIYGLGIACLYMGLYSFEYLK--------------------  114 (176)
Q Consensus        70 --------------~~~~~~~~~-~~~~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~--------------------  114 (176)
                                    .....+... .+++...+......+|+|++|+++.+.+++..+|-.                    
T Consensus       978 ~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tpq~~f~ni~~~~~~~p~g 1057 (1205)
T KOG0606|consen  978 SERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETPQQIFENILNRDIPWPEG 1057 (1205)
T ss_pred             cccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcchhhhhhccccCCCCCCCC
Confidence                          000111122 233344466677889999999999999888887632                    


Q ss_pred             ------HHHHHHHhhcccCCCCCCCHH
Q 044320          115 ------RFMSLALKYCEDETKARPSML  135 (176)
Q Consensus       115 ------~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                            ..++++...+..++.+|-.+.
T Consensus      1058 ~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1058 PEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             ccccChhhhhhhhhhhccCchhccCcc
Confidence                  366777777788888886554

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.42  E-value=0.00032  Score=50.66  Aligned_cols=44  Identities=25%  Similarity=0.301  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           17 IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        17 i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      ++..+.+++.-+|+.|   +.|+|..|.|++++.++ ++++||+..+.
T Consensus       140 ~~~ki~~~ikqlH~~G---~~HGD~hpgNFlv~~~~-i~iID~~~k~~  183 (229)
T PF06176_consen  140 LAEKIVEAIKQLHKHG---FYHGDPHPGNFLVSNNG-IRIIDTQGKRM  183 (229)
T ss_pred             HHHHHHHHHHHHHHcC---CccCCCCcCcEEEECCc-EEEEECccccc
Confidence            5567888899999999   99999999999998554 99999986654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.32  E-value=0.00023  Score=58.05  Aligned_cols=39  Identities=15%  Similarity=0.165  Sum_probs=32.7

Q ss_pred             HHHhcCCCCCeEecCCCCCCeEeCCCC----CeEEeecCCcccCCC
Q 044320           26 LYLHTEADPPIIHWDIKATNTLLDSKF----TPKVFDFEISRLAPV   67 (176)
Q Consensus        26 ~~lh~~~~~~~vH~dl~~~nil~~~~~----~~~l~dfg~~~~~~~   67 (176)
                      ..+...|   ++|+|++|.||+++.++    .++++|||+......
T Consensus       274 ~Qif~~G---ffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        274 TQVFRDG---FFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             HHHHhCC---eeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence            3345678   99999999999999887    899999999876543

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=97.17  E-value=0.002  Score=46.07  Aligned_cols=30  Identities=27%  Similarity=0.489  Sum_probs=25.5

Q ss_pred             CCeEecCCCCCCeEeCC--CCCeEEeecCCcc
Q 044320           34 PPIIHWDIKATNTLLDS--KFTPKVFDFEISR   63 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~--~~~~~l~dfg~~~   63 (176)
                      ..++|+|+++.||+++.  ++.+.++||+.+.
T Consensus       174 ~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~  205 (223)
T cd05154         174 PGLVHGDYRLGNVLFHPDEPRVVAVLDWELAT  205 (223)
T ss_pred             cEEEECCCCcccEEEcCCCCcEEEEEeccccc
Confidence            45899999999999988  5668899998764

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.08  E-value=0.0011  Score=49.34  Aligned_cols=48  Identities=19%  Similarity=0.129  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCC
Q 044320           11 LAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEI   61 (176)
Q Consensus        11 ~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~   61 (176)
                      -+..-.++..|..-+.-....|   +||+|+++-||+++++|.+.++||=-
T Consensus       201 ~en~~~il~~il~~~~~~~~~G---iVHGDlSefNIlV~~dg~~~vIDwPQ  248 (304)
T COG0478         201 VENPDEILDKILEEVRKAYRRG---IVHGDLSEFNILVTEDGDIVVIDWPQ  248 (304)
T ss_pred             ccCHHHHHHHHHHHHHHHHHcC---ccccCCchheEEEecCCCEEEEeCcc
Confidence            3444555666666666666778   99999999999999999999999853

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=96.72  E-value=0.0056  Score=43.34  Aligned_cols=56  Identities=20%  Similarity=0.076  Sum_probs=48.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      .-+|..+.+||.+++..+.+++..-.+.+.-.|++++|+.++.++.+|++|..-..
T Consensus        55 ~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v~  110 (188)
T PF12260_consen   55 QSPWEQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDDGRLKLIDLDDVF  110 (188)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCCCcEEEEechhcc
Confidence            35899999999999999999987544448889999999999999999999986543

Proteins in this uncharacterised family are described as transmembrane proteins.

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=96.65  E-value=0.0065  Score=44.72  Aligned_cols=54  Identities=17%  Similarity=0.167  Sum_probs=44.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCC
Q 044320            9 VSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP   66 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~   66 (176)
                      ++.++...+..++...+.-|.. .+   +||+||+.-|||+. ++.+.++||+-+-...
T Consensus       163 ~e~~e~~~~~~~~v~~~~~l~~~a~---LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~  217 (268)
T COG1718         163 LELEEAEGLYEDVVEYMRRLYKEAG---LVHGDLSEYNILVH-DGEPYIIDVSQAVTID  217 (268)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHhcC---cccccchhhheEEE-CCeEEEEECccccccC
Confidence            3344677888888899888887 66   99999999999999 8889999999775544

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=95.57  E-value=0.06  Score=40.74  Aligned_cols=31  Identities=26%  Similarity=0.265  Sum_probs=26.7

Q ss_pred             CCCeEecCCCCCCeEeCCC----CCeEEeecCCcc
Q 044320           33 DPPIIHWDIKATNTLLDSK----FTPKVFDFEISR   63 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~----~~~~l~dfg~~~   63 (176)
                      ...++|+|+.+.||+++.+    +.+.++||..+.
T Consensus       178 ~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~  212 (302)
T cd05156         178 PVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS  212 (302)
T ss_pred             CceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence            4459999999999999874    789999998774

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=95.53  E-value=0.048  Score=48.27  Aligned_cols=133  Identities=19%  Similarity=0.221  Sum_probs=86.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCC---CeEeCCCCCeEEe--ecCCcccCCCCCCCCc--ccccee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKAT---NTLLDSKFTPKVF--DFEISRLAPVPNINGV--VGHVSI   79 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~---nil~~~~~~~~l~--dfg~~~~~~~~~~~~~--~~~~~~   79 (176)
                      ..++..+.+.+..++..|+.|+|+..   ..|.-+..+   +.-.+..+....+  ||+..+..........  ....+.
T Consensus       281 ~~i~~~~~r~~~~~~~~GL~~~h~~~---l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~~~~~~~~~~~  357 (1351)
T KOG1035|consen  281 GSIPLETLRILHQKLLEGLAYLHSLS---LEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKSFSDLLAEIRN  357 (1351)
T ss_pred             cccCHHHHHHHHHHHhhhHHHHHHhc---cceeEEecccccccccCccceeecchhhhcccccCCCcccchhhcCccccc
Confidence            45778889999999999999999986   666666555   3344555666666  7877766555443221  111122


Q ss_pred             eecCCC--CCCCCcccchhhHhHHHHHHhccChH--------------HHHHHHHHHHhhcccCCCCCCCHHHHHHHHH
Q 044320           80 VVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFE--------------YLKRFMSLALKYCEDETKARPSMLEVARQLE  142 (176)
Q Consensus        80 ~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~--------------~~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~  142 (176)
                      +.....  ........|+|.+|..+..+..+...              +.....+...+|...++++|++..+++...-
T Consensus       358 ~~e~~~~~~~~~~r~~dL~~lgll~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~Rl~~~~ll~~~f  436 (1351)
T KOG1035|consen  358 ADEDLKENTAKKSRLTDLWCLGLLLLQLSQGEDISEKSAVPVSLLDVLSTSELLDALPKCLDEDSEERLSALELLTHPF  436 (1351)
T ss_pred             cccccccccchhhhhhHHHHHHHHHhhhhhcCcccccccchhhhhccccchhhhhhhhhhcchhhhhccchhhhhhchh
Confidence            222222  22333457999999988876444332              1124667778999999999999998877654

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=95.42  E-value=0.052  Score=42.50  Aligned_cols=54  Identities=22%  Similarity=0.263  Sum_probs=45.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccC
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA   65 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~   65 (176)
                      -.++++..|+++.+.-+.-+..  +-++-||++.-.||+++ +|.+.++||.+++..
T Consensus       318 ~~~~e~lsff~s~~sil~~lek--kf~fehrnlt~~niLId-~GnvtLIDfklsRl~  371 (488)
T COG5072         318 DRSEEELSFFWSCISILDILEK--KFPFEHRNLTLDNILID-EGNVTLIDFKLSRLS  371 (488)
T ss_pred             ccHHHHHHHHHHHHHHHhhhhh--cCCcccccccccceeee-cCceEEEEeeeeecc
Confidence            4578999999998876666654  33489999999999999 999999999999843

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=95.26  E-value=0.021  Score=41.69  Aligned_cols=31  Identities=26%  Similarity=0.300  Sum_probs=25.5

Q ss_pred             CCCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           33 DPPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      ...++|+|+.+.|++++.++.+-++||+.+.
T Consensus       163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~  193 (235)
T cd05155         163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCLG  193 (235)
T ss_pred             CceEEeCCCCCCcEEEECCCEEEEEeCcccC
Confidence            3449999999999999876656799998763

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=95.26  E-value=0.041  Score=39.94  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=26.0

Q ss_pred             CCeEecCCCCCCeEeCC-CCCeEEeecCCcc
Q 044320           34 PPIIHWDIKATNTLLDS-KFTPKVFDFEISR   63 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~-~~~~~l~dfg~~~   63 (176)
                      ..++|+|+.+.||+++. ++.+.++||..+.
T Consensus       170 ~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~  200 (235)
T cd05157         170 IVFCHNDLLSGNIIYNEEKNSVKFIDYEYAG  200 (235)
T ss_pred             EEEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence            35999999999999997 5789999998664

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=95.22  E-value=0.018  Score=42.14  Aligned_cols=31  Identities=19%  Similarity=0.133  Sum_probs=26.5

Q ss_pred             CCCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           33 DPPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      .+.++|+|+.+.|++++.++.+.|+||+.+.
T Consensus       162 ~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~  192 (244)
T cd05150         162 DLVVTHGDACLPNIIVDPGKFSGFIDLGRLG  192 (244)
T ss_pred             ceEEECCCCCCccEEEeCCcEEEEEEccccc
Confidence            4569999999999999987777899998663

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=95.10  E-value=0.07  Score=39.98  Aligned_cols=47  Identities=23%  Similarity=0.187  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           17 IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        17 i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      .+..+-..+.-.+.. .-.++|+|+.+.|++.++.+.+.++||..+..
T Consensus       137 ~~~~l~~~l~~~~~~-~~v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~  183 (269)
T COG0510         137 KLKELRRALEEVPKD-DLVPCHNDLNPGNLLLTDKGGLFLIDWEYAGL  183 (269)
T ss_pred             HHHHHHHHhhhcCCC-ceeeecCCCCccceEEcCCCcEEEEecccCCC
Confidence            444444445555443 12499999999999999999999999987754

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=95.08  E-value=0.025  Score=41.23  Aligned_cols=30  Identities=17%  Similarity=0.081  Sum_probs=25.8

Q ss_pred             CCCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           33 DPPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      .+.++|+|+.|.|++++.++ +.++||+.+.
T Consensus       152 ~~~~~HgD~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       152 TSTCLHGDFQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             CCceEecCCCCCcEEEcCCC-cEEEechhcC
Confidence            34589999999999999888 9999998663

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=95.06  E-value=0.055  Score=44.26  Aligned_cols=40  Identities=23%  Similarity=0.192  Sum_probs=33.7

Q ss_pred             HHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC
Q 044320           25 ILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV   67 (176)
Q Consensus        25 l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~   67 (176)
                      +..+-..|   ++|.|.+|.|++++.+|.+.+.|||.......
T Consensus       278 ~~q~~~dg---ffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~  317 (517)
T COG0661         278 LRQLLRDG---FFHADPHPGNILVRSDGRIVLLDFGIVGRLDP  317 (517)
T ss_pred             HHHHHhcC---ccccCCCccceEEecCCcEEEEcCcceecCCH
Confidence            34444567   99999999999999999999999999876553

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=94.99  E-value=0.05  Score=41.37  Aligned_cols=30  Identities=30%  Similarity=0.398  Sum_probs=25.9

Q ss_pred             CCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           34 PPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      ..++|+|+.+.|++++.++.+.++||+.+.
T Consensus       187 ~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       187 RGVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             CccCCCCCCcCcEEEECCceEEEeeccccc
Confidence            349999999999999988767899998763

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=94.77  E-value=0.11  Score=39.42  Aligned_cols=28  Identities=29%  Similarity=0.309  Sum_probs=24.0

Q ss_pred             CeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           35 PIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        35 ~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      .++|+|+.+.|++++. +.+.++||+.+.
T Consensus       188 ~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       188 GFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             ceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            3899999999999987 568899998653

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PRK10271 thiK thiamine kinase; Provisional

Probab=94.63  E-value=0.042  Score=38.83  Aligned_cols=30  Identities=20%  Similarity=0.249  Sum_probs=25.7

Q ss_pred             CCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           34 PPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      ...+|+|+.|.|+++++++ ++++||+.+..
T Consensus        77 ~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~  106 (188)
T PRK10271         77 LAPLHMDVHAGNLVHSASG-LRLIDWEYAGD  106 (188)
T ss_pred             eeeecCCCCCccEEEECCC-EEEEeCCcccC
Confidence            3579999999999998777 88999998754

>TIGR02721 ycfN_thiK thiamine kinase

Probab=94.57  E-value=0.034  Score=41.04  Aligned_cols=30  Identities=23%  Similarity=0.298  Sum_probs=25.4

Q ss_pred             CCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           34 PPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      ..++|+|+.+.|++++.++ +.++||+.+..
T Consensus       146 ~~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~  175 (256)
T TIGR02721       146 LAPLHMDVHAYNLVVTPQG-LKLIDWEYASD  175 (256)
T ss_pred             CeeecCCCCcCcEEEeCCC-CEEEeccccCc
Confidence            3589999999999998877 78999987643

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=94.45  E-value=0.025  Score=40.56  Aligned_cols=30  Identities=37%  Similarity=0.503  Sum_probs=20.2

Q ss_pred             CCCeEecCCCCCCeEeC-CCCCeEEeecCCc
Q 044320           33 DPPIIHWDIKATNTLLD-SKFTPKVFDFEIS   62 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~-~~~~~~l~dfg~~   62 (176)
                      ...++|+|+.+.||+++ +++.+-++||+.+
T Consensus       165 ~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a  195 (239)
T PF01636_consen  165 PPVLIHGDLHPGNILVDPSDGRIGIIDFEDA  195 (239)
T ss_dssp             CEEEE-SS-SGGGEEEESSTTEEEE--GTT-
T ss_pred             CcEEEEeccccccceeeeccceeEEEecccc
Confidence            34499999999999999 5565679999865

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=94.41  E-value=0.027  Score=40.39  Aligned_cols=29  Identities=28%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             CeEecCCCCCCeEe-CCCCCeEEeecCCcc
Q 044320           35 PIIHWDIKATNTLL-DSKFTPKVFDFEISR   63 (176)
Q Consensus        35 ~~vH~dl~~~nil~-~~~~~~~l~dfg~~~   63 (176)
                      ++.|+|+.+.||++ +.++.++++||..+.
T Consensus       144 v~cHnDl~~~Nil~~~~~~~~~lIDfEya~  173 (211)
T PF01633_consen  144 VFCHNDLNPGNILINNKDGEVKLIDFEYAG  173 (211)
T ss_dssp             EEE-S--SGGGEEETSSSSCEEE--GTT-E
T ss_pred             eEeeccCccccEEeccCCCeEEEecHHHHh
Confidence            58999999999999 888999999998774

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PRK05231 homoserine kinase; Provisional

Probab=94.37  E-value=0.12  Score=39.51  Aligned_cols=30  Identities=23%  Similarity=0.298  Sum_probs=25.2

Q ss_pred             CeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           35 PIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        35 ~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      .++|+|+.+.||+++.+...-++||+.+..
T Consensus       188 ~liHgD~~~~Nil~~~~~~~~iIDf~~~~~  217 (319)
T PRK05231        188 GVIHADLFRDNVLFEGDRLSGFIDFYFACN  217 (319)
T ss_pred             ccCCCCCCCCcEEEECCceEEEEecccccC
Confidence            399999999999998766668999987643

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=94.30  E-value=0.082  Score=39.83  Aligned_cols=29  Identities=31%  Similarity=0.395  Sum_probs=25.4

Q ss_pred             CeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           35 PIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        35 ~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      .++|+|+.|.|++++.++.+.++||+.+.
T Consensus       176 ~l~HgD~~~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         176 GVIHADLFRDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             cCCccCcCcccEEEeCCceEEEeehhhhc
Confidence            49999999999999987777899998663

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=94.00  E-value=0.072  Score=38.99  Aligned_cols=39  Identities=21%  Similarity=0.207  Sum_probs=32.4

Q ss_pred             HHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCc
Q 044320           23 EGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS   62 (176)
Q Consensus        23 ~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~   62 (176)
                      .+|.-.|+. .+..+|+|..|+||+.|..|.+|+.|-+..
T Consensus       152 ~~L~~fH~~-~~~~lHGD~np~NiM~D~~G~lKlVDP~~L  190 (308)
T PF07387_consen  152 KDLMDFHSE-NQHCLHGDCNPDNIMCDKFGYLKLVDPVCL  190 (308)
T ss_pred             HHHHHhhcc-CCCeecCCCChhheeecCCCCEEecChhhh
Confidence            457777865 445999999999999999999999997643

The function of this family is unknown.

>PLN02236 choline kinase

Probab=93.87  E-value=0.14  Score=39.80  Aligned_cols=31  Identities=19%  Similarity=0.326  Sum_probs=26.1

Q ss_pred             CCeEecCCCCCCeEeCC-CCCeEEeecCCccc
Q 044320           34 PPIIHWDIKATNTLLDS-KFTPKVFDFEISRL   64 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~-~~~~~l~dfg~~~~   64 (176)
                      ..++|+|+++.||+++. ++.+.++||..+..
T Consensus       200 ~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~  231 (344)
T PLN02236        200 IGFCHNDLQYGNIMIDEETRAITIIDYEYASY  231 (344)
T ss_pred             ceEEeCCCCcCcEEEeCCCCcEEEEeehhccc
Confidence            35999999999999976 46899999987753

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=93.47  E-value=0.075  Score=39.94  Aligned_cols=32  Identities=16%  Similarity=0.388  Sum_probs=25.5

Q ss_pred             CCCeEecCCCCCCeEeCCCCC-eEEeecCCccc
Q 044320           33 DPPIIHWDIKATNTLLDSKFT-PKVFDFEISRL   64 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~~~-~~l~dfg~~~~   64 (176)
                      .+.++|+|+++.|++++.++. +-++||+.+..
T Consensus       184 ~~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~i  216 (276)
T cd05152         184 HTVLVHGDLHPGHILIDEDARVTGLIDWTEAKV  216 (276)
T ss_pred             CCeeEeCCCCCCcEEEeCCCCEEEEECcHhccc
Confidence            345999999999999987554 56999987643

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=93.39  E-value=0.3  Score=37.74  Aligned_cols=28  Identities=32%  Similarity=0.510  Sum_probs=24.8

Q ss_pred             eEecCCCCCCeEeCCCCC-eEEeecCCcc
Q 044320           36 IIHWDIKATNTLLDSKFT-PKVFDFEISR   63 (176)
Q Consensus        36 ~vH~dl~~~nil~~~~~~-~~l~dfg~~~   63 (176)
                      +||+|+.+.||+++.+.. +.++||+-+.
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEccccc
Confidence            899999999999998874 8899998663

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=93.34  E-value=0.091  Score=37.34  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=24.6

Q ss_pred             CCeEecCCCCCCeEeCCCC-----CeEEeecCCcc
Q 044320           34 PPIIHWDIKATNTLLDSKF-----TPKVFDFEISR   63 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~-----~~~l~dfg~~~   63 (176)
                      ..++|+|+.+.|+++..++     .+.++||..+.
T Consensus       120 ~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~  154 (196)
T smart00587      120 NVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSH  154 (196)
T ss_pred             eEEeeCCCCccceeeccCCCCCccceEEEecccCC
Confidence            4699999999999997543     58999998764

subfamily of choline kinases

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=93.02  E-value=0.11  Score=39.83  Aligned_cols=32  Identities=28%  Similarity=0.541  Sum_probs=28.5

Q ss_pred             CCCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           33 DPPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      .+.++|+|+.+.|++++..+.+-|.||+.+..
T Consensus       197 ~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~l  228 (321)
T COG3173         197 PPVLVHGDYRPGNLIIDPGRPTGVLDWELATL  228 (321)
T ss_pred             CceeeeCCcccCCEEEeCCCeeEEEecccccc
Confidence            45799999999999999988899999998754

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=92.88  E-value=0.26  Score=37.57  Aligned_cols=30  Identities=17%  Similarity=0.274  Sum_probs=26.6

Q ss_pred             CeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           35 PIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        35 ~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      .++|+|+.++|++++.++.+.++||..+..
T Consensus       197 ~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~  226 (309)
T TIGR02904       197 VLVHGKLSLSHFLYDETRGGYFINFEKASF  226 (309)
T ss_pred             eeeCCCCcHHhEEEcCCCCEEEEEhhhccc
Confidence            499999999999999998999999987643

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=92.36  E-value=0.33  Score=38.59  Aligned_cols=30  Identities=20%  Similarity=0.348  Sum_probs=24.9

Q ss_pred             CCCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           33 DPPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      ...++|+|+.+.||++..+ .++++||.++.
T Consensus       222 ~~~l~HgDl~~gni~~~~~-~~~viD~E~a~  251 (401)
T PRK09550        222 AEALLHGDLHTGSIFVTEE-ETKVIDPEFAF  251 (401)
T ss_pred             CCceeeccCCcccEEeeCC-CcEEEeccccc
Confidence            4459999999999999766 58999997653

>PRK06148 hypothetical protein; Provisional

Probab=92.01  E-value=1.1  Score=39.93  Aligned_cols=28  Identities=29%  Similarity=0.334  Sum_probs=23.4

Q ss_pred             eEecCCCCCCeEeCCCC--Ce-EEeecCCcc
Q 044320           36 IIHWDIKATNTLLDSKF--TP-KVFDFEISR   63 (176)
Q Consensus        36 ~vH~dl~~~nil~~~~~--~~-~l~dfg~~~   63 (176)
                      +||+|+.+.||+++.++  .+ -|+|||-+.
T Consensus       205 vIHgDln~~NiLv~~~~~~~isGiIDFgDa~  235 (1013)
T PRK06148        205 VIHNDANDYNILVDADDGERISGLIDFGDAV  235 (1013)
T ss_pred             eECCCCCcccEEEcCCCCcceEEEEECcccc
Confidence            99999999999998774  44 489999663

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=90.55  E-value=0.28  Score=37.88  Aligned_cols=31  Identities=23%  Similarity=0.257  Sum_probs=26.2

Q ss_pred             CCeEecCCCCCCeEeCC-CCCeEEeecCCccc
Q 044320           34 PPIIHWDIKATNTLLDS-KFTPKVFDFEISRL   64 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~-~~~~~l~dfg~~~~   64 (176)
                      .++.|.|+.+.||+++. ++.++++||..+..
T Consensus       182 ~v~CHnDl~~~NiL~~~~~~~l~lID~EYag~  213 (330)
T PLN02421        182 VVFAHNDLLSGNLMLNEDEGKLYFIDFEYGSY  213 (330)
T ss_pred             eEEEECCCCcccEEEeCCCCcEEEEcccccCC
Confidence            45899999999999974 57899999987754

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=90.14  E-value=0.37  Score=39.66  Aligned_cols=47  Identities=30%  Similarity=0.229  Sum_probs=33.8

Q ss_pred             cccchhhHhHHHHHHhccChHHH-----------------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           91 EKSDIYGLGIACLYMGLYSFEYL-----------------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        91 ~~~Dv~s~G~~l~~l~~~~~~~~-----------------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      +++|||++|.++.++..+..-+.                                   +.+.++.++|....|..||...
T Consensus       110 pKsdVwsl~~i~~el~L~~~l~~~~~~s~~l~~i~k~~~~d~~~~~~a~e~~~~~~~d~~~~~~~~~c~~~~~~ir~l~~  189 (725)
T KOG1093|consen  110 PKSDVWSLGFIILELYLGISLEAELTESEYLEILLKYYTDDQELLSTAMEHLIQLLADKKRLPLLKKCLWLEPIIRPLPM  189 (725)
T ss_pred             cchhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhhhHhHHHHhccCCccccccccchh
Confidence            69999999999887744333221                                   2366788899999999888654


Q ss_pred             HH
Q 044320          136 EV  137 (176)
Q Consensus       136 ~i  137 (176)
                      ++
T Consensus       190 ~~  191 (725)
T KOG1093|consen  190 EL  191 (725)
T ss_pred             HH
Confidence            33

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=90.11  E-value=0.049  Score=41.21  Aligned_cols=92  Identities=14%  Similarity=0.125  Sum_probs=43.4

Q ss_pred             CCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC------CCCCccc--cceeeecCCCCCCCCcccchhhHhHHHHH
Q 044320           33 DPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP------NINGVVG--HVSIVVKGTHTQQLTEKSDIYGLGIACLY  104 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~Dv~s~G~~l~~  104 (176)
                      .|..+|+||.+.|++.+.+|...+.|-...--...-      ...+...  +..|.-.......+..+.++|.+-.+|.-
T Consensus       187 ~PsLlHGDLW~GN~~~~~~g~p~l~DPa~yygh~E~DLam~~lfggf~~~f~~~Y~~~~Pl~~g~~~R~~lY~Ly~lL~H  266 (288)
T PF03881_consen  187 KPSLLHGDLWSGNVGFDADGEPVLFDPACYYGHREVDLAMTRLFGGFPDEFYDAYQEHYPLSEGWEDRNPLYQLYHLLNH  266 (288)
T ss_dssp             --EEE-SS-SGGGEEEETTE-EEE-S---EEE-CHHHHHHHCCCSTTHHHHHHHHHHHS---TTHHHHHHHHHHHHHHHH
T ss_pred             CceeeEcCccccceeecCCCCceeeccccccCchHhhhhhhhhhCCCCHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHH
Confidence            577999999999999999988888884321100000      0000000  00011001112445556777777666655


Q ss_pred             HhccChHHHHHHHHHHHhhc
Q 044320          105 MGLYSFEYLKRFMSLALKYC  124 (176)
Q Consensus       105 l~~~~~~~~~~l~~l~~~~~  124 (176)
                      +......+...+.+++.+.+
T Consensus       267 ~~lFG~~Y~~~~~~~l~~ll  286 (288)
T PF03881_consen  267 LNLFGGSYRSQVRRILKRLL  286 (288)
T ss_dssp             HHHC-GCHHHHHHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHh
Confidence            55555566666666666554

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=89.84  E-value=1  Score=37.23  Aligned_cols=56  Identities=13%  Similarity=0.054  Sum_probs=37.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC----CCCeEEeecCCcccCCCC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS----KFTPKVFDFEISRLAPVP   68 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~----~~~~~l~dfg~~~~~~~~   68 (176)
                      .++...+..-+.++..-+  +-..|   ++|.|=+|.||++..    ++.+.+.|||+.....+.
T Consensus       299 gi~~~~i~~~l~~~~~~q--If~~G---ffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~~  358 (538)
T KOG1235|consen  299 GISPHDILNKLVEAYLEQ--IFKTG---FFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISHK  358 (538)
T ss_pred             CCCHHHHHHHHHHHHHHH--HHhcC---CccCCCCCCcEEEecCCCCCccEEEEcccccccccHH
Confidence            344444444444443322  33457   999999999999984    568999999988765543

>PRK11768 serine/threonine protein kinase; Provisional

Probab=89.42  E-value=1.1  Score=34.43  Aligned_cols=28  Identities=25%  Similarity=0.379  Sum_probs=23.0

Q ss_pred             CeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           35 PIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        35 ~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      .++|+|+.+.||+++ + ...++||+-+..
T Consensus       197 ~liHgD~h~~NvL~~-d-~~~iIDFDd~~~  224 (325)
T PRK11768        197 LRLHGDCHPGNILWR-D-GPHFVDLDDARM  224 (325)
T ss_pred             cceecCCCchhcccc-C-CcEEEeCCCCCC
Confidence            389999999999995 3 578999987643

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=88.73  E-value=0.97  Score=35.25  Aligned_cols=39  Identities=26%  Similarity=0.276  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecC
Q 044320           19 LGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE   60 (176)
Q Consensus        19 ~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg   60 (176)
                      ..+..-+.-|..+|   +||+|+.-=||++++++.++++||=
T Consensus       209 ~~lm~~Iv~la~~G---lIHgDFNEFNimv~dd~~i~vIDFP  247 (465)
T KOG2268|consen  209 DDLMGLIVRLANHG---LIHGDFNEFNIMVKDDDKIVVIDFP  247 (465)
T ss_pred             HHHHHHHHHHHHcC---ceecccchheeEEecCCCEEEeech
Confidence            34444455666788   9999999999999999999999984

>COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only]

Probab=87.94  E-value=1.8  Score=33.07  Aligned_cols=54  Identities=22%  Similarity=0.297  Sum_probs=33.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHH-HHHHhcCCCCCeEecCCCCCCeEeCCC----CCeEEeecC
Q 044320            5 FRRSVSLAMRLHIALGLAEG-ILYLHTEADPPIIHWDIKATNTLLDSK----FTPKVFDFE   60 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~-l~~lh~~~~~~~vH~dl~~~nil~~~~----~~~~l~dfg   60 (176)
                      .+.+++-.+...+-. ++.+ +.-+-.+ ..+++|||..+.|+++...    ..+-+.||-
T Consensus       172 ~g~~l~~~~r~~~~a-iwd~Lid~~~~~-~~vlvhRDfh~~NLmw~~~~~g~~rvGvlDFQ  230 (351)
T COG3178         172 LGRPLTDAERQAWEA-IWDGLIDSLLAQ-PKVLVHRDFHSRNLMWTADRAGADRVGVLDFQ  230 (351)
T ss_pred             hCCCCCHHHHHHHHH-HHHHHHHHHhcC-CceeeeccccCccceecCCccCCCCCceeehh
Confidence            455666665554432 2222 3333333 4559999999999999654    356777873

>PRK10593 hypothetical protein; Provisional

Probab=87.85  E-value=1.8  Score=32.84  Aligned_cols=28  Identities=11%  Similarity=0.134  Sum_probs=21.7

Q ss_pred             CCCeEecCCCCCCeEeCCC-CC-eEEeecC
Q 044320           33 DPPIIHWDIKATNTLLDSK-FT-PKVFDFE   60 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~-~~-~~l~dfg   60 (176)
                      .+.++|+|+.+.|++++.+ +. ..+.|..
T Consensus       192 ~psLlHGDlw~gNvl~~~~~~~i~~liDPa  221 (297)
T PRK10593        192 NCVLVHGNFTLRSMLKDPRSDQLLAMLNPG  221 (297)
T ss_pred             CCeeEeCCCCcccEEECCCCCceEEEECch
Confidence            4569999999999999865 43 5677754

>PHA03111 Ser/Thr kinase; Provisional

Probab=87.64  E-value=2  Score=33.57  Aligned_cols=35  Identities=23%  Similarity=0.188  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHhcCC-CCCeEecCCCCCCeEe
Q 044320           14 RLHIALGLAEGILYLHTEA-DPPIIHWDIKATNTLL   48 (176)
Q Consensus        14 ~~~i~~~i~~~l~~lh~~~-~~~~vH~dl~~~nil~   48 (176)
                      +..++.|++.-.-.+.... -.-++|-||||+|||+
T Consensus       281 ikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILi  316 (444)
T PHA03111        281 IKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILI  316 (444)
T ss_pred             HHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEE
Confidence            4566778775442332110 1129999999999998

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=87.62  E-value=1.3  Score=34.88  Aligned_cols=28  Identities=21%  Similarity=0.339  Sum_probs=23.3

Q ss_pred             CeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           35 PIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        35 ~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      .++|+|+.+.||+++.++ ++++|+.++.
T Consensus       193 ~llHGDl~~gNi~~~~~~-~~~iD~e~~~  220 (370)
T TIGR01767       193 TLLHGDLHSGSIFVSEHE-TKVIDPEFAF  220 (370)
T ss_pred             eeeeccCCcccEEEcCCC-CEEEcCcccc
Confidence            499999999999997654 7799987653

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PLN02756 S-methyl-5-thioribose kinase

Probab=87.47  E-value=1.2  Score=35.55  Aligned_cols=37  Identities=16%  Similarity=0.321  Sum_probs=26.9

Q ss_pred             HHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCc
Q 044320           25 ILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS   62 (176)
Q Consensus        25 l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~   62 (176)
                      |++.-....+..+|+|+.+.||+++.++ .+++|..++
T Consensus       221 Lk~~f~~~~~~L~HGDl~~g~i~~~~~~-~~~id~ef~  257 (418)
T PLN02756        221 LKSMFCERAQALVHGDLHTGSVMVTPDS-TQVIDPEFA  257 (418)
T ss_pred             HHHHHHhcccceeecCCCCCcEEEcCCC-ceEecchhh
Confidence            4433333356699999999999998865 788886544

>PRK12396 5-methylribose kinase; Reviewed

Probab=86.53  E-value=1.3  Score=35.30  Aligned_cols=29  Identities=24%  Similarity=0.445  Sum_probs=23.9

Q ss_pred             CCCeEecCCCCCCeEeCCCCCeEEeecCCc
Q 044320           33 DPPIIHWDIKATNTLLDSKFTPKVFDFEIS   62 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~~~~~l~dfg~~   62 (176)
                      ....+|+||++.||+++.+ .++++|..++
T Consensus       226 ~~aLlHGDlHtGSI~v~~~-~~kvIDpEFA  254 (409)
T PRK12396        226 AQALIHGDLHTGSVFVKND-STKVIDPEFA  254 (409)
T ss_pred             chhhccCcCCCCCEEecCC-ceEEEccccc
Confidence            3449999999999999876 4899997665

>PRK06149 hypothetical protein; Provisional

Probab=86.51  E-value=1.2  Score=39.74  Aligned_cols=28  Identities=25%  Similarity=0.220  Sum_probs=22.8

Q ss_pred             eEecCCCCCCeEeCCC--CC---eEEeecCCcc
Q 044320           36 IIHWDIKATNTLLDSK--FT---PKVFDFEISR   63 (176)
Q Consensus        36 ~vH~dl~~~nil~~~~--~~---~~l~dfg~~~   63 (176)
                      +||.|+.+.||+++.+  +.   .-++|||-+.
T Consensus       210 ~IH~Dl~~~Nilv~~~~~~~~~v~giIDFgD~~  242 (972)
T PRK06149        210 AVHLDITDDNVVGSRDADGRWQPDGVIDFGDLV  242 (972)
T ss_pred             ccCCCCCcccEEEcCCCCCCcceeEEEEcccch
Confidence            9999999999999865  22   4789998654

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=86.29  E-value=1.3  Score=33.27  Aligned_cols=31  Identities=23%  Similarity=0.262  Sum_probs=24.6

Q ss_pred             CCCeEecCCCCCCeEeCCC--C---CeEEeecCCcc
Q 044320           33 DPPIIHWDIKATNTLLDSK--F---TPKVFDFEISR   63 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~--~---~~~l~dfg~~~   63 (176)
                      ...++|+|++..|+++..+  |   .+.+.||-+++
T Consensus       214 ~~vl~HGD~w~nNilf~~~~~g~~~~~~liDfQ~~~  249 (294)
T PF02958_consen  214 FNVLCHGDFWTNNILFKYDDDGKPIDVVLIDFQLAR  249 (294)
T ss_pred             ceEEEcCccCHHhEeEccccccccccceeecccccc
Confidence            3569999999999999554  3   58899987653

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly

Probab=86.12  E-value=1.3  Score=34.66  Aligned_cols=32  Identities=25%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHh----cCCCCCeEecCCCCCCeEe
Q 044320           14 RLHIALGLAEGILYLH----TEADPPIIHWDIKATNTLL   48 (176)
Q Consensus        14 ~~~i~~~i~~~l~~lh----~~~~~~~vH~dl~~~nil~   48 (176)
                      ++.++.|+|.-.--+.    ..+   ++|-||||+|||+
T Consensus       277 vkfifLQiaLLyikIYelp~c~n---F~H~DLKPdNILi  312 (434)
T PF05445_consen  277 VKFIFLQIALLYIKIYELPCCTN---FLHVDLKPDNILI  312 (434)
T ss_pred             HHHHHHHHHHHHeeeecCCCcce---eeecccCcCcEEE
Confidence            4455667764321121    223   9999999999998

; GO: 0004672 protein kinase activity, 0005524 ATP binding

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=84.87  E-value=0.67  Score=43.22  Aligned_cols=118  Identities=7%  Similarity=-0.085  Sum_probs=73.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCC--CCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-C-CccccceeeecCC
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEA--DPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-N-GVVGHVSIVVKGT   84 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~--~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~-~~~~~~~~~~~~~   84 (176)
                      ++..-+...-.+......-+|+..  ...-+|+++++-|.++..+..+++.++|+.+....... . ...+.+.+..+..
T Consensus      1332 ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~qli 1411 (2724)
T KOG1826|consen 1332 LDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMIVTNYNVKLGKGGLDKIKNPVLSFFGLELCSPIYVLQLI 1411 (2724)
T ss_pred             chhchHHHHHHHHHhccchhhhcccCCccchhhhhhhhccceecCCcccccccccccccCchHhhhhhhhCCHHHHHHHH
Confidence            344444444444355555555442  34588999999999999999999999999984332221 1 1122222222222


Q ss_pred             C-CCCCCcccchhhHhHHHHHHhccChHHHHHHHHHHHhhccc
Q 044320           85 H-TQQLTEKSDIYGLGIACLYMGLYSFEYLKRFMSLALKYCED  126 (176)
Q Consensus        85 ~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~~l~~l~~~~~~~  126 (176)
                      . ...++.++|+|..|+.+|+...+..++-..++..++.....
T Consensus      1412 ~N~ik~t~rsdilr~s~~ly~rs~~n~~fi~flq~~Lkgiidn 1454 (2724)
T KOG1826|consen 1412 KNEIKFTKRSDILRRSLSLYLRSDGNAYFIFFLQPALKGIIDN 1454 (2724)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCcccc
Confidence            2 45667779999999999988887777766655555444333

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.81  E-value=5.1  Score=29.75  Aligned_cols=90  Identities=17%  Similarity=0.104  Sum_probs=51.5

Q ss_pred             CCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Ccccc-----ceeeecCCCCCCCCcccchhhHhHHH
Q 044320           33 DPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVGH-----VSIVVKGTHTQQLTEKSDIYGLGIAC  102 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~~~~Dv~s~G~~l  102 (176)
                      .|..+|+||...|.....+| ..+.|-.  ...++.+.-     -..++     -.+..-......+..+.++|-+-.++
T Consensus       186 qPsLlHGDLW~gN~a~~~~G-Pv~fDPA--~y~GDrE~Dlam~elFggfp~efy~gY~sv~PL~~G~~eRk~iYqLY~ll  262 (286)
T COG3001         186 QPSLLHGDLWSGNCAFGKDG-PVIFDPA--CYWGDRECDLAMLELFGGFPPEFYDGYQSVSPLPAGYLERKPIYQLYHLL  262 (286)
T ss_pred             CcceeecccccccccccCCC-Ceeeccc--cccCCcccceehhhhhcCCcHHHHHhhhccCCCCCchHHHhHHHHHHHHH
Confidence            47799999999999998888 5555521  111111110     00010     01111122345566677888877666


Q ss_pred             HHHhccChHHHHHHHHHHHhhcc
Q 044320          103 LYMGLYSFEYLKRFMSLALKYCE  125 (176)
Q Consensus       103 ~~l~~~~~~~~~~l~~l~~~~~~  125 (176)
                      -........+.......+.++++
T Consensus       263 nh~~~FGg~Y~~~a~k~i~~iL~  285 (286)
T COG3001         263 NHANLFGGHYLVEAQKSIDRILS  285 (286)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhc
Confidence            55555555666677777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	176
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		6e-13
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		6e-13
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		1e-12
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-12
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		3e-09
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		5e-09
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		6e-09
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		1e-08
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		2e-08
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		4e-08
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		7e-06
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		1e-05
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		1e-05
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		1e-05
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		1e-05
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		1e-05
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		1e-05
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		1e-05
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		1e-05
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		1e-05
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		1e-05
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-05
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		2e-05
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		2e-05
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		2e-05
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-05
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		2e-05
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-05
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		2e-05
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		2e-05
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		4e-05
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		2e-04
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		5e-04
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		5e-04
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		7e-04
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		7e-04

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 14  RLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN---- 69
           R  IALG A G+ YLH   DP IIH D+KA N LLD +F   V DF +++L    +    
Sbjct: 133 RQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVX 192
Query: 70  --INGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYM 105
             + G +GH  I  +   T + +EK+D++G G+  L +
Sbjct: 193 XAVRGXIGH--IAPEYLSTGKSSEKTDVFGYGVMLLEL 228

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 14  RLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN---- 69
           R  IALG A G+ YLH   DP IIH D+KA N LLD +F   V DF +++L    +    
Sbjct: 141 RQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVX 200
Query: 70  --INGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYM 105
             + G +GH  I  +   T + +EK+D++G G+  L +
Sbjct: 201 XAVRGTIGH--IAPEYLSTGKSSEKTDVFGYGVMLLEL 236

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 16/102 (15%)
Query: 8   SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV 67
           S+S   RL I +G A G+ YLHT A   IIH D+K+ N LLD  F PK+ DF IS+    
Sbjct: 135 SMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTE 191
Query: 68  PNINGVVGHVSIVVKGTH---------TQQLTEKSDIYGLGI 100
            +      H+  VVKGT            +LTEKSD+Y  G+
Sbjct: 192 LDQT----HLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGV 229

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 16/102 (15%)
Query: 8   SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV 67
           S+S   RL I +G A G+ YLHT A   IIH D+K+ N LLD  F PK+ DF IS+    
Sbjct: 135 SMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTE 191
Query: 68  PNINGVVGHVSIVVKGTH---------TQQLTEKSDIYGLGI 100
                   H+  VVKGT            +LTEKSD+Y  G+
Sbjct: 192 LGQT----HLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGV 229

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 9   VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR----L 64
           +S  MR  IA G A GI +LH       IH DIK+ N LLD  FT K+ DF ++R     
Sbjct: 130 LSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKF 186
Query: 65  APVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACL 103
           A     + +VG  + +       ++T KSDIY  G+  L
Sbjct: 187 AQTVMXSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLL 225

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 9   VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR----L 64
           +S  MR  IA G A GI +LH       IH DIK+ N LLD  FT K+ DF ++R     
Sbjct: 130 LSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKF 186
Query: 65  APVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACL 103
           A       +VG  + +       ++T KSDIY  G+  L
Sbjct: 187 AQTVMXXRIVGTTAYMAPEALRGEITPKSDIYSFGVVLL 225

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 9   VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR----L 64
           +S  MR  IA G A GI +LH       IH DIK+ N LLD  FT K+ DF ++R     
Sbjct: 124 LSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKF 180
Query: 65  APVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACL 103
           A       +VG  + +       ++T KSDIY  G+  L
Sbjct: 181 AQXVMXXRIVGTTAYMAPEALRGEITPKSDIYSFGVVLL 219

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           R  +    RL +A  +A+G+ YLH   +PPI+H D+K+ N L+D K+T KV DF +SRL 
Sbjct: 131 REQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLK 189
Query: 66  PVPNINGVVGHVS---IVVKGTHTQQLTEKSDIYGLGI 100
               +       +   +  +    +   EKSD+Y  G+
Sbjct: 190 ASXFLXSKXAAGTPEWMAPEVLRDEPSNEKSDVYSFGV 227

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 9   VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR----L 64
           +S   R  IA G A GI +LH       IH DIK+ N LLD  FT K+ DF ++R     
Sbjct: 121 LSWHXRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKF 177
Query: 65  APVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACL 103
           A     + +VG  +         ++T KSDIY  G+  L
Sbjct: 178 AQXVXXSRIVGTTAYXAPEALRGEITPKSDIYSFGVVLL 216

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           R  +    RL +A  +A+G+ YLH   +PPI+H ++K+ N L+D K+T KV DF +SRL 
Sbjct: 131 REQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLK 189
Query: 66  PVPNINGVVGHVS---IVVKGTHTQQLTEKSDIYGLGI 100
               ++      +   +  +    +   EKSD+Y  G+
Sbjct: 190 ASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGV 227

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ YL   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 137 FGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNK 193
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 194 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 224

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ YL   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 138 FGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 194
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 195 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 225

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ YL   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 130 FGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 186
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 187 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 217

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ YL   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 136 FGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 192
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 193 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 223

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ YL   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 138 FGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 194
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 195 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 225

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ YL   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 133 FGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 189
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 190 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 220

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ YL   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 137 FGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 193
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 194 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 224

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ YL   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 135 FGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 191
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 192 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 222

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ YL   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 157 FGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 213
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 214 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 244

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 10/100 (10%)
Query: 9   VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-----KFTPKVFDFEISR 63
           +  +++L + L +A GI Y+  + +PPI+H D+++ N  L S         KV DF +S+
Sbjct: 119 IKWSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFSLSQ 177
Query: 64  LAPVPNINGVVGHVSIVVK---GTHTQQLTEKSDIYGLGI 100
            + V +++G++G+   +     G   +  TEK+D Y   +
Sbjct: 178 QS-VHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAM 216

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ YL   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 156 FGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 212
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 213 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 243

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ +L   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 136 FGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK 192
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 193 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 223

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ +L   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 139 FGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNK 195
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 196 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 226

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ +L   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 139 FGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK 195
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 196 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 226

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 10/100 (10%)
Query: 9   VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-----KFTPKVFDFEISR 63
           +  +++L + L +A GI Y+  + +PPI+H D+++ N  L S         KV DF +S+
Sbjct: 119 IKWSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ 177
Query: 64  LAPVPNINGVVGHVSIVVK---GTHTQQLTEKSDIYGLGI 100
            + V +++G++G+   +     G   +  TEK+D Y   +
Sbjct: 178 QS-VHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAM 216

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ +L   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 138 FGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK 194
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 195 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 225

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 23  EGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL---APVPNINGVVGHVSI 79
           +GI + H   D  I+H DIK  N L+DS  T K+FDF I++      +   N V+G V  
Sbjct: 122 DGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQY 178
Query: 80  V----VKGTHTQQLTEKSDIYGLGIACLYM--GLYSFEYLKRFMSLALKYCED 126
                 KG  T + T   DIY +GI    M  G   F   +  +S+A+K+ +D
Sbjct: 179 FSPEQAKGEATDECT---DIYSIGIVLYEMLVGEPPFNG-ETAVSIAIKHIQD 227

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ +L   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 197 FGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK 253
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 254 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 284

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ +L   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 143 FGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK 199
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 200 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 230

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 17  IALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR------LAPVPNI 70
             L +A+G+ +L   A    +H D+ A N +LD KFT KV DF ++R         V N 
Sbjct: 138 FGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK 194
Query: 71  NGVVGHVS-IVVKGTHTQQLTEKSDIYGLGI 100
            G    V  + ++   TQ+ T KSD++  G+
Sbjct: 195 TGAKLPVKWMALESLQTQKFTTKSDVWSFGV 225

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 9   VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-----KFTPKVFDFEISR 63
           +  +++L + L +A GI Y+  + +PPI+H D+++ N  L S         KV DF  S+
Sbjct: 119 IKWSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTSQ 177
Query: 64  LAPVPNINGVVGHVSIVVK---GTHTQQLTEKSDIYGLGI 100
            + V +++G++G+   +     G   +  TEK+D Y   +
Sbjct: 178 QS-VHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAM 216

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           R S+ LA  L  A  + EG+ YLH +     IH D+ A N LLD+    K+ DF +++  
Sbjct: 128 RHSIGLAQLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAV 184
Query: 66  P 66
           P
Sbjct: 185 P 185

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           +R+ ++   +   L +A G+ YL   A+   +H D+ A N +LD  FT KV DF ++R  
Sbjct: 118 QRNPTVKDLISFGLQVARGMEYL---AEQKFVHRDLAARNCMLDESFTVKVADFGLARDI 174
Query: 66  PVPNINGVVG--HVSIVVKGT-----HTQQLTEKSDIYGLGI 100
                  V    H  + VK T      T + T KSD++  G+
Sbjct: 175 LDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGV 216

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           R S+ LA  L  A  + EG+ YLH++     IH ++ A N LLD+    K+ DF +++  
Sbjct: 111 RHSIGLAQLLLFAQQICEGMAYLHSQH---YIHRNLAARNVLLDNDRLVKIGDFGLAKAV 167
Query: 66  P 66
           P
Sbjct: 168 P 168

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 15  LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDF-----------EISR 63
           LHI + +AE + +LH++    ++H D+K +N         KV DF           E + 
Sbjct: 167 LHIFIQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTV 223
Query: 64  LAPVPNINGVVGHVSIVV----KGTHTQQLTEKSDIYGLGIACLYMGLYSF 110
           L P+P      G V   +    +  H    + K DI+ LG+  L+  LYSF
Sbjct: 224 LTPMPAYATHXGQVGTKLYMSPEQIHGNNYSHKVDIFSLGL-ILFELLYSF 273

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           R S+ LA  L  A  + EG+ YLH +     IH ++ A N LLD+    K+ DF +++  
Sbjct: 111 RHSIGLAQLLLFAQQICEGMAYLHAQH---YIHRNLAARNVLLDNDRLVKIGDFGLAKAV 167
Query: 66  P 66
           P
Sbjct: 168 P 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	7e-37
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	1e-31
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	3e-30
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-18
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	3e-17
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-17
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-16
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	5e-16
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	3e-15
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	6e-15
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	7e-15
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-14
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-14
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-14
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-14
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-14
3q4u_A	301	Activin receptor type-1; structural genomics conso	7e-14
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	6e-13
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-11
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	9e-10
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-08
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-07
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-07
3ork_A	311	Serine/threonine protein kinase; structural genomi	7e-07
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	9e-07
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	1e-06
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-06
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	3e-06
2dyl_A	318	Dual specificity mitogen-activated protein kinase	3e-06
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	3e-06
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-06
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	8e-06
3fme_A	290	Dual specificity mitogen-activated protein kinase;	8e-06
3an0_A	340	Dual specificity mitogen-activated protein kinase;	1e-05
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-05
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-05
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-05
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-05
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	4e-05
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	5e-05
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	5e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	7e-05
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	7e-05
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	8e-05
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	8e-05
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-04
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	1e-04
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-04
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-04
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-04
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-04
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-04
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-04
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	3e-04
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-04
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-04
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	3e-04
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	4e-04
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	4e-04
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	5e-04
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	6e-04
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	6e-04
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	6e-04
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	7e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	8e-04
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	9e-04
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	9e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  128 bits (324), Expect = 7e-37
 Identities = 54/183 (29%), Positives = 73/183 (39%), Gaps = 56/183 (30%)

Query: 14  RLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV 73
           RL I +G A G+ YLHT     IIH D+K+ N LLD  F PK+ DF IS+     +    
Sbjct: 141 RLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELD---- 193

Query: 74  VGHVSIVVKGTH---------TQQLTEKSDIYGLGI------------------------ 100
             H+S VVKGT            +LTEKSD+Y  G+                        
Sbjct: 194 QTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLA 253

Query: 101 --ACLYM--------------GLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENI 144
             A                       E L++F   A+K     ++ RPSM +V  +LE  
Sbjct: 254 EWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYA 313

Query: 145 SSM 147
             +
Sbjct: 314 LRL 316

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  114 bits (288), Expect = 1e-31
 Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 53/180 (29%)

Query: 13  MRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING 72
           MR  IA G A GI +LH   +   IH DIK+ N LLD  FT K+ DF ++R +       
Sbjct: 134 MRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEK----F 186

Query: 73  VVGHVSIVVKGTH--------TQQLTEKSDIYGLGIACL--------------------- 103
               ++  + GT           ++T KSDIY  G+  L                     
Sbjct: 187 AQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDI 246

Query: 104 -----------------YMGLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENISS 146
                             M       ++   S+A +   ++   RP + +V + L+ +++
Sbjct: 247 KEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  111 bits (279), Expect = 3e-30
 Identities = 52/181 (28%), Positives = 73/181 (40%), Gaps = 56/181 (30%)

Query: 13  MRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING 72
            R  IALG A G+ YLH   DP IIH D+KA N LLD +F   V DF +++L    +   
Sbjct: 132 KRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDT-- 189

Query: 73  VVGHVSIVVKGTH---------TQQLTEKSDIYGLGIACL-------------------- 103
              HV+  V+GT          T + +EK+D++G G+  L                    
Sbjct: 190 ---HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDV 246

Query: 104 --------------YMGL--------YSFEYLKRFMSLALKYCEDETKARPSMLEVARQL 141
                            L        Y  E +++ + +AL   +     RP M EV R L
Sbjct: 247 MLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 306

Query: 142 E 142
           E
Sbjct: 307 E 307

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 36/210 (17%), Positives = 59/210 (28%), Gaps = 73/210 (34%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEAD-------PPIIHWDIKATNTLLDSKFTPKVFD 58
              VS     HIA  +A G+ YLH +         P I H DIK+ N LL +  T  + D
Sbjct: 115 ANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIAD 174

Query: 59  FEISRLAPVPNINGVVGHVSIVVKGT--------------HTQQLTEKSDIYGLGI---- 100
           F ++         G     +    GT                +    + D+Y +G+    
Sbjct: 175 FGLALKFE----AGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWE 230

Query: 101 ---ACLYMGLYSFEY---------------------------------------LKRFMS 118
               C        EY                                       +     
Sbjct: 231 LASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCE 290

Query: 119 LALKYC-EDETKARPSMLEVARQLENISSM 147
              + C + + +AR S   V  ++  +  +
Sbjct: 291 TIEE-CWDHDAEARLSAGCVGERITQMQRL 319

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 76.2 bits (188), Expect = 3e-17
 Identities = 38/189 (20%), Positives = 67/189 (35%), Gaps = 49/189 (25%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFT-PKVFDFEI 61
           +      + A  +   L  ++G+ YLH+     +IH D+K  N LL +  T  K+ DF  
Sbjct: 93  AEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGT 152

Query: 62  SRLAPVPNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACLY-------- 104
           +           +       KG+              +EK D++  GI  L+        
Sbjct: 153 AC---------DIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGI-ILWEVITRRKP 202

Query: 105 ---MGLYSFEYL----------------KRFMSLALKYC-EDETKARPSMLEVARQLENI 144
              +G  +F  +                K   SL +  C   +   RPSM E+ + + ++
Sbjct: 203 FDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESL-MTRCWSKDPSQRPSMEEIVKIMTHL 261

Query: 145 SSMLPESDT 153
               P +D 
Sbjct: 262 MRYFPGADE 270

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 75.8 bits (187), Expect = 4e-17
 Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 54/194 (27%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           R  +    RL +A  +A+G+ YLH   +PPI+H ++K+ N L+D K+T KV DF +SRL 
Sbjct: 131 REQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLK 189

Query: 66  PVPNIN--GVVGHVSI------VVKGTHTQQLTEKSDIYGLGIACL---------YMGLY 108
               ++     G  +       V++    +   EKSD+Y  G+  L         +  L 
Sbjct: 190 ASTFLSSKSAAG--TPEWMAPEVLRD---EPSNEKSDVYSFGV-ILWELATLQQPWGNLN 243

Query: 109 SF--------------------EYLKRFMSLALKYC-EDETKARPSMLEVARQLENI-SS 146
                                   +   +    + C  +E   RPS   +   L  +  S
Sbjct: 244 PAQVVAAVGFKCKRLEIPRNLNPQVAAII----EGCWTNEPWKRPSFATIMDLLRPLIKS 299

Query: 147 MLPESDTIPTESDI 160
            +P     P  SD+
Sbjct: 300 AVPP----PNRSDL 309

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 73.0 bits (180), Expect = 3e-16
 Identities = 24/171 (14%), Positives = 54/171 (31%), Gaps = 37/171 (21%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
              V  +  +  AL +A G+ +LHT  +P I    + + + ++D   T ++   ++    
Sbjct: 105 NFVVDQSQAVKFALDMARGMAFLHTL-EPLIPRHALNSRSVMIDEDMTARISMADVKFSF 163

Query: 66  PVPNINGVVGHVSI----VVKGTHTQQLTEKSDIYGLGIACL---------YMGLYSFEY 112
                 G +   +      ++          +D++   +  L         +  L + E 
Sbjct: 164 ---QSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAV-LLWELVTREVPFADLSNMEI 219

Query: 113 L-----------------KRFMSLALKYC-EDETKARPSMLEVARQLENIS 145
                                  L +K C  ++   RP    +   LE + 
Sbjct: 220 GMKVALEGLRPTIPPGISPHVSKL-MKICMNEDPAKRPKFDMIVPILEKMQ 269

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 73.0 bits (179), Expect = 5e-16
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 24/119 (20%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEAD------PPIIHWDIKATNTLLDSKFTPKVFDF 59
             +        +A  +  G+ YLHTE        P I H D+ + N L+ +  T  + DF
Sbjct: 105 LHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDF 164

Query: 60  EISRL--APVPNINGVVGHVSIVVKGT----------------HTQQLTEKSDIYGLGI 100
            +S           G   + +I   GT                  +   ++ D+Y LG+
Sbjct: 165 GLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGL 223

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 70.4 bits (173), Expect = 3e-15
 Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 48/180 (26%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTP--------KVF 57
            + +   + ++ A+ +A G+ YLH EA  PIIH D+K++N L+  K           K+ 
Sbjct: 99  GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKIT 158

Query: 58  DFEISRLAPVPNINGVVGHVSI------VVKGTHTQQLTEKSDIYGLGIACL-------- 103
           DF ++R           G  +       V++ +     ++ SD++  G+  L        
Sbjct: 159 DFGLAREWHRTTKMSAAG--AYAWMAPEVIRASMF---SKGSDVWSYGV-LLWELLTGEV 212

Query: 104 -YMGLYSFEYL-----------------KRFMSLALKYC-EDETKARPSMLEVARQLENI 144
            + G+                       + F  L ++ C   +  +RPS   +  QL  I
Sbjct: 213 PFRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKL-MEDCWNPDPHSRPSFTNILDQLTTI 271

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 42/178 (23%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
                +   + IA   A G+ YLH      IIH D+K+ N  L    T K+ DF ++   
Sbjct: 114 ETKFEMKKLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEK 170

Query: 66  PVPNINGVVGHVSI--------VVKGTHTQQLTEKSDIYGLGIACLY------------- 104
              + +     +S         V++   +   + +SD+Y  GI  LY             
Sbjct: 171 SRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGI-VLYELMTGQLPYSNIN 229

Query: 105 -----MGLYSFEYLKRFMSLALKYCEDETKA------------RPSMLEVARQLENIS 145
                + +     L   +S     C    K             RPS   +  ++E ++
Sbjct: 230 NRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 22/115 (19%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEAD-----PPIIHWDIKATNTLLDSKFTPKVFDFE 60
           R +V++   + +AL  A G+ +LH E       P I H D+K+ N L+    T  + D  
Sbjct: 133 RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG 192

Query: 61  ISRLAPVPNINGVVGHVSIVVKGT---------------HTQQLTEKSDIYGLGI 100
           ++      +    +        GT                  +  +++DIY +G+
Sbjct: 193 LAVR--HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGL 245

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 22/115 (19%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEAD-----PPIIHWDIKATNTLLDSKFTPKVFDFE 60
             ++     L +A     G+ +LHTE       P I H D+K+ N L+    T  + D  
Sbjct: 128 STTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLG 187

Query: 61  ISRLAPVPNINGVVGHVSIVVKGT---------------HTQQLTEKSDIYGLGI 100
           ++      +    V        GT               +  Q    +D+Y  G+
Sbjct: 188 LAVK--FISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGL 240

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 34/177 (19%), Positives = 72/177 (40%), Gaps = 43/177 (24%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-----FTPKVFDFE 60
              +  +++L + L +A GI Y+  + +PPI+H D+++ N  L S         KV DF 
Sbjct: 116 AHPIKWSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFG 174

Query: 61  ISRLAPVPNINGVVGHVSI----VVKGTHTQQLTEKSDIYGLGIACLY-----------M 105
           +S+ +   +++G++G+        +     +  TEK+D Y   +  LY            
Sbjct: 175 LSQQSV-HSVSGLLGNFQWMAPETIGAEE-ESYTEKADTYSFAM-ILYTILTGEGPFDEY 231

Query: 106 GLYSFEYL-----------------KRFMSLALKYC-EDETKARPSMLEVARQLENI 144
                +++                  R  ++ ++ C   + K RP    + ++L  +
Sbjct: 232 SYGKIKFINMIREEGLRPTIPEDCPPRLRNV-IELCWSGDPKKRPHFSYIVKELSEL 287

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 46/201 (22%)

Query: 7   RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP 66
                + R+  A  +A G+ YLH+     IIH D+ + N L+       V DF ++RL  
Sbjct: 103 SQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMV 159

Query: 67  VPNINGVVGHVSIVVKGTHTQQL-----------------TEKSDIYGLGI--------- 100
                                 +                  EK D++  GI         
Sbjct: 160 DEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRV 219

Query: 101 -ACLYMGLYSFEYLK----------------RFMSLALKYCEDETKARPSMLEVARQLEN 143
            A       + ++                   F  + ++ C+ + + RPS +++   LE 
Sbjct: 220 NADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLET 279

Query: 144 ISSMLPESDTIPTESDISASG 164
           +   L     +  + +    G
Sbjct: 280 LRMHLAGHLPLGPQLEQLDRG 300

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 67.0 bits (164), Expect = 7e-14
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 22/115 (19%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEAD-----PPIIHWDIKATNTLLDSKFTPKVFDFE 60
             ++     L I L +A G+ +LH E       P I H D+K+ N L+       + D  
Sbjct: 99  LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLG 158

Query: 61  ISRLAPVPNINGVVGHVSIVVKGT---------------HTQQLTEKSDIYGLGI 100
           ++ +         +   +    GT                     ++ DI+  G+
Sbjct: 159 LAVM--HSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGL 211

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 64.3 bits (157), Expect = 6e-13
 Identities = 30/183 (16%), Positives = 59/183 (32%), Gaps = 50/183 (27%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           +  + +     IA  + +G+ YLH      I+H D+K+ N   D+     + DF +  ++
Sbjct: 124 KIVLDVNKTRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYDNG-KVVITDFGLFSIS 179

Query: 66  PVPNINGVVGHVSI-----------VVKGTHTQQL------TEKSDIYGLGIACLY---- 104
            V         + I           +++             ++ SD++ LG    Y    
Sbjct: 180 GVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGT-IWYELHA 238

Query: 105 ----------------------MGLYSFEYLKRFMSLALKYC-EDETKARPSMLEVARQL 141
                                   L      K    + L +C   E + RP+  ++   L
Sbjct: 239 REWPFKTQPAEAIIWQMGTGMKPNLSQIGMGKEISDI-LLFCWAFEQEERPTFTKLMDML 297

Query: 142 ENI 144
           E +
Sbjct: 298 EKL 300

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 34/158 (21%)

Query: 15  LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVV 74
           L + LG+  G+  +H        H D+K TN LL  +  P + D      A +       
Sbjct: 137 LWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQ 193

Query: 75  GHVSIVVKGTHT---------------QQLTEKSDIYGLGIACLYMGLYSFEYLK----- 114
                                        + E++D++ LG  C+   LY+  + +     
Sbjct: 194 ALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLG--CV---LYAMMFGEGPYDM 248

Query: 115 ---RFMSLALKYCEDETKARPSML-EVARQLENISSML 148
              +  S+AL      +  +         QL  ++SM+
Sbjct: 249 VFQKGDSVALAVQNQLSIPQSPRHSSALWQL--LNSMM 284

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 55.1 bits (133), Expect = 9e-10
 Identities = 43/193 (22%), Positives = 66/193 (34%), Gaps = 46/193 (23%)

Query: 15  LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVV 74
           L I       + ++H    PPIIH D+K  N LL ++ T K+ DF  +            
Sbjct: 139 LKIFYQTCRAVQHMH-RQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWS 197

Query: 75  GHVSIVVKGTHTQQLT------------------EKSDIYGLGIACLY------------ 104
                +V+   T+  T                  EK DI+ LG   LY            
Sbjct: 198 AQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGC-ILYLLCFRQHPFEDG 256

Query: 105 ------MGLYSF----EYLKRFMSLALKYC--EDETKARPSMLEVARQLENISSMLPESD 152
                  G YS          F SL ++     +  + R S+ EV  QL+ I++    + 
Sbjct: 257 AKLRIVNGKYSIPPHDTQYTVFHSL-IRAMLQVNPEE-RLSIAEVVHQLQEIAAARNVNP 314

Query: 153 TIPTESDISASGE 165
             P    +  +G 
Sbjct: 315 KSPITELLEQNGG 327

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 18/92 (19%)

Query: 23  EGILYLHTEADPPIIHWDIKATNTLLDSKF-TPKVFDFEISRLAPVPNINGVVGHVSIVV 81
           +G+ +LHT   PPIIH D+K  N  +     + K+ D  ++ L        V+       
Sbjct: 140 KGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVI------- 191

Query: 82  KGTH--------TQQLTEKSDIYGLGIACLYM 105
            GT          ++  E  D+Y  G+  L M
Sbjct: 192 -GTPEFMAPEMYEEKYDESVDVYAFGMCMLEM 222

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 30/156 (19%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
              +S+   ++    + +GI + H      I+H DIK  N L+DS  T K+FDF I++  
Sbjct: 105 HGPLSVDTAINFTNQILDGIKHAHDMR---IVHRDIKPQNILIDSNKTLKIFDFGIAKAL 161

Query: 66  PVPNI---NGVVGHVSIV----VKGTHTQQLTEKSDIYGLGIACLYMGLYSFEYL---KR 115
              ++   N V+G V        KG   +   E +DIY +GI  LY      E L     
Sbjct: 162 SETSLTQTNHVLGTVQYFSPEQAKG---EATDECTDIYSIGI-VLY------EMLVGEPP 211

Query: 116 F-----MSLALKYCEDETKARPSML--EVARQLENI 144
           F     +S+A+K+ +D      + +  ++ + L N+
Sbjct: 212 FNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNV 247

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 48.9 bits (116), Expect = 1e-07
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 6/104 (5%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
             FR    +     +   L      L ++    ++H      N  +       + D    
Sbjct: 185 YVFRGDEGILALHILTAQLIRLAANLQSKG---LVHGHFTPDNLFIMPDGRLMLGDVSAL 241

Query: 63  RLAP--VPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLY 104
                  P  +  V +         T   T   + + LG+  +Y
Sbjct: 242 WKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGL-SIY 284

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 16/99 (16%)

Query: 15  LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR-----LAPVPN 69
           + +     + + + H      IIH D+K  N ++ +    KV DF I+R        V  
Sbjct: 119 IEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQ 175

Query: 70  INGVVGHVSIV----VKGTHTQQLTEKSDIYGLGIACLY 104
              V+G    +     +G     +  +SD+Y LG   LY
Sbjct: 176 TAAVIGTAQYLSPEQARG---DSVDARSDVYSLGC-VLY 210

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 46.8 bits (111), Expect = 9e-07
 Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 27/166 (16%)

Query: 16  HIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVG 75
            +++ + +G+ YL  +    I+H D+K +N L++S+   K+ DF            GV G
Sbjct: 135 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDF------------GVSG 180

Query: 76  HVSIVVKGTHT-------------QQLTEKSDIYGLGIACLYMGLYSFEYLKRFMSLALK 122
            +   +  +                  + +SDI+ +G++ + M +  +            
Sbjct: 181 QLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 240

Query: 123 YCEDETKARPSMLEVARQLENISSMLPESDTIPTESDISASGEILE 168
               + +   +      +           D+ P  +       I+ 
Sbjct: 241 MFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVN 286

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 13/111 (11%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
           S   +S+    RL + L +   +  LH      ++H  ++  + +LD +    +  FE  
Sbjct: 202 SSTHKSLVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHL 258

Query: 63  RLAPVPNI---NGVVGHVSIV------VKGTHTQQLTEKSDIYGLGIACLY 104
                  +                       H   +T   D + LG+  +Y
Sbjct: 259 VRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGL-AIY 308

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 14/112 (12%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
           S   +S+    RL + L +   +  LH      ++H  ++  + +LD +    +  FE  
Sbjct: 197 SSTHKSLVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHL 253

Query: 63  -RLAPVPNING---------VVGHVSIVVKGTHTQQLTEKSDIYGLGIACLY 104
            R       +               +I         +T   D + LG+  +Y
Sbjct: 254 VRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGL-VIY 304

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 18/95 (18%)

Query: 23  EGILYLHTEADPPIIHWDIKATNTLLDSKFTP-KVFDFEIS-RLAPVPNINGVVGHVSI- 79
           EG+ YLHT     I+H D+KA N LL S  +   + DF  +  L P      ++    I 
Sbjct: 161 EGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIP 217

Query: 80  ---------VVKGTHTQQLTEKSDIYGLGIACLYM 105
                    VV G        K DI+      L+M
Sbjct: 218 GTETHMAPEVVMGK---PCDAKVDIWSSCCMMLHM 249

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 16  HIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS-RLAPVPNINGVV 74
            + + + + + YL  +    +IH D+K +N LLD +   K+ DF IS RL      +   
Sbjct: 128 KMTVAIVKALYYLKEKHG--VIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSA 185

Query: 75  GHVS------IVVKGTHTQQLTEKSDIYGLGIACLYMGLYSFEY 112
           G  +      I            ++D++ LGI+ + +    F Y
Sbjct: 186 GCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPY 229

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 35/170 (20%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
              + +   L +    A G+ YL ++     IH D+ A N L+  K   K+ DF +SR  
Sbjct: 207 GARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREE 263

Query: 66  PVPNINGVVGHVSIVVKGT-----HTQQLTEKSDIYGLGIACL----------YMGLYSF 110
                    G   + VK T     +  + + +SD++  GI  L          Y  L + 
Sbjct: 264 ADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGI-LLWETFSLGASPYPNLSNQ 322

Query: 111 EYLKRFMS----------------LALKYCEDETKARPSMLEVARQLENI 144
           +  +                    L  +    E   RPS   + ++L++I
Sbjct: 323 QTREFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSI 372

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 22/110 (20%)

Query: 21  LAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIV 80
           + E + Y+H++    IIH D+K  N  +D     K+ DF +++          +   ++ 
Sbjct: 125 ILEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLP 181

Query: 81  VKGTHTQQL------------------TEKSDIYGLGIACLYMGLYSFEY 112
               +                       EK D+Y LGI   +  +Y F  
Sbjct: 182 GSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGI-IFFEMIYPFST 230

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 43.7 bits (103), Expect = 8e-06
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 23/107 (21%)

Query: 15  LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDF--------EISRLAP 66
           LHI + +AE + +LH++    ++H D+K +N         KV DF        +      
Sbjct: 167 LHIFIQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTV 223

Query: 67  VPNINGVVGHVSIVVKGTHT---------QQLTEKSDIYGLGIACLY 104
           +  +     H   V  GT              + K DI+ LG+  L+
Sbjct: 224 LTPMPAYATHTGQV--GTKLYMSPEQIHGNNYSHKVDIFSLGL-ILF 267

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 16  HIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
            IA+ + + + +LH++    +IH D+K +N L+++    K+ DF IS
Sbjct: 113 KIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKMCDFGIS 157

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 20/99 (20%)

Query: 15  LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVV 74
           L +   + +G+ Y+H      +I+ D+K +N  L      K+ DF +        +    
Sbjct: 125 LELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTS-----LKNDG 176

Query: 75  GHVSIVVKGT---------HTQQLTEKSDIYGLGIACLY 104
                   GT          +Q   ++ D+Y LG+  L 
Sbjct: 177 KRTRSK--GTLRYMSPEQISSQDYGKEVDLYALGL-ILA 212

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 26/147 (17%)

Query: 15  LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVV 74
           L   + +   + ++H   D  I+H DIK+ N  L    T ++ DF I+R+     +N  V
Sbjct: 128 LDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARV-----LNSTV 179

Query: 75  GHVSIVVKGT---------HTQQLTEKSDIYGLGIACLY---MGLYSFEYLKRFMSLALK 122
                 + GT           +    KSDI+ LG   LY      ++F       +L LK
Sbjct: 180 ELARACI-GTPYYLSPEICENKPYNNKSDIWALGC-VLYELCTLKHAF-EAGSMKNLVLK 236

Query: 123 YCEDETKARPSML-EVARQLENISSML 148
                            R L  +S + 
Sbjct: 237 IISGSFPPVSLHYSYDLRSL--VSQLF 261

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 26/152 (17%)

Query: 15  LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL--------AP 66
           LHI L +AE + +LH      ++H D+K +N         KV DF +             
Sbjct: 121 LHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTV 177

Query: 67  VPNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACLYMGLYSFEYLKRFM 117
           +  +     H   V  GT         H    + K DI+ LG+  L+  LY F      +
Sbjct: 178 LTPMPAYARHTGQV--GTKLYMSPEQIHGNSYSHKVDIFSLGL-ILFELLYPFSTQMERV 234

Query: 118 SLALKYCEDETKARPSML-EVARQLENISSML 148
                    +     +        +  +  ML
Sbjct: 235 RTLTDVRNLKFPPLFTQKYPCEYVM--VQDML 264

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 16  HIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
            I L   + + +L       IIH DIK +N LLD     K+ DF IS
Sbjct: 129 KITLATVKALNHLKENLK--IIHRDIKPSNILLDRSGNIKLCDFGIS 173

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 29/123 (23%)

Query: 8   SVSLAMRLHIALGLAE------------GILYLHTEADPPIIHWDIKATNTLLDSKFTPK 55
           S    +  H   G+ E             + Y+H       +H  +KA++ L+       
Sbjct: 112 SAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVY 168

Query: 56  VFDFEISR--LAPVPNINGVVGHVSIVVKGT-----------HTQQLTEKSDIYGLGIAC 102
           +     +   ++       V       V              + Q    KSDIY +GI  
Sbjct: 169 LSGLRSNLSMISHGQRQRVVHDFPKYSV-KVLPWLSPEVLQQNLQGYDAKSDIYSVGITA 227

Query: 103 LYM 105
             +
Sbjct: 228 CEL 230

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 15/92 (16%)

Query: 23  EGILYLHTEADPPIIHWDIKATNTLLDSKF-TPKVFDFEIS-RLAPV-PNINGVVGHVSI 79
           EG+ YLH      I+H DIK  N L+++     K+ DF  S RLA + P      G  ++
Sbjct: 133 EGLKYLHDNQ---IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTG--TL 187

Query: 80  ------VVKGTHTQQLTEKSDIYGLGIACLYM 105
                 ++     +   + +DI+ LG   + M
Sbjct: 188 QYMAPEIIDKG-PRGYGKAADIWSLGCTIIEM 218

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 18/101 (17%)

Query: 15  LHIALGLAEGILYLHTEADPP--IIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING 72
           L +   L   +   H  +D    ++H D+K  N  LD K   K+ DF ++R+    N + 
Sbjct: 114 LRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARIL---NHDT 170

Query: 73  VVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACLY 104
                 +   GT         +     EKSDI+ LG   LY
Sbjct: 171 SFAKTFV---GTPYYMSPEQMNRMSYNEKSDIWSLGC-LLY 207

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 9/103 (8%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
               + + L   + +A  +A G+ Y+        +H D++A N L+      KV DF ++
Sbjct: 354 GETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLA 410

Query: 63  RLAPVPNINGVVGHVSIVVKGT-----HTQQLTEKSDIYGLGI 100
           RL    N           +K T        + T KSD++  GI
Sbjct: 411 RLIE-DNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 452

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 9/103 (8%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
               + + L   + +A  +A G+ Y+        +H D++A N L+      KV DF ++
Sbjct: 271 GETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLA 327

Query: 63  RLAPVPNINGVVGHVSIVVKGT-----HTQQLTEKSDIYGLGI 100
           RL    N           +K T        + T KSD++  GI
Sbjct: 328 RLIE-DNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 369

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 14/97 (14%)

Query: 15  LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---N 71
           + I   +   +   H        H D+K  N L+ +     + DF I+       +    
Sbjct: 137 VAIVRQIGSALDAAHAAG---ATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLG 193

Query: 72  GVVGHVSIV----VKGTHTQQLTEKSDIYGLGIACLY 104
             VG +  +             T ++DIY L    LY
Sbjct: 194 NTVGTLYYMAPERFSE---SHATYRADIYALTC-VLY 226

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 12/97 (12%)

Query: 16  HIALGLAE---GILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING 72
            IA        G+ YLH+     +IH D+KA N LL      K+ DF  +  + +   N 
Sbjct: 155 EIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSA--SIMAPANS 209

Query: 73  VVGH----VSIVVKGTHTQQLTEKSDIYGLGIACLYM 105
            VG        V+      Q   K D++ LGI C+ +
Sbjct: 210 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 246

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 21  LAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP 66
           +     Y+H E +  I H D+K +N L+D     K+ DF  S    
Sbjct: 160 VLNSFSYIHNEKN--ICHRDVKPSNILMDKNGRVKLSDFGESEYMV 203

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 24/147 (16%)

Query: 21  LAEGILYLHTEADPPIIHWDIKATNTLL-----DSKFTPKVFDFEISR--------LAPV 67
              G+ +LH+     I+H D+K  N L+       K    + DF + +         +  
Sbjct: 127 TTSGLAHLHSLN---IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRR 183

Query: 68  PNINGVVGHVSI-VVKGTHTQQLTEKSDIYGLGIACLYM---GL--YSFEYLKRFMSLAL 121
             + G  G ++  ++     +  T   DI+  G    Y+   G   +     ++   L  
Sbjct: 184 SGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLG 243

Query: 122 KYCEDETKARPSMLEVARQLENISSML 148
               D          +AR+L  I  M+
Sbjct: 244 ACSLDCLHPEKHEDVIAREL--IEKMI 268

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 19/93 (20%)

Query: 21  LAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIV 80
           L   + ++H      ++H DIK  N  + +    K+ D  + R       +        +
Sbjct: 145 LCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRF-----FSSKTTAAHSL 196

Query: 81  VKGT---------HTQQLTEKSDIYGLGIACLY 104
           V GT         H      KSDI+ LG   LY
Sbjct: 197 V-GTPYYMSPERIHENGYNFKSDIWSLGC-LLY 227

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
           S       L   +  +  +AEG+ ++        IH D++A N L+ +    K+ DF ++
Sbjct: 275 SDEGSKQPLPKLIDFSAQIAEGMAFI---EQRNYIHRDLRAANILVSASLVCKIADFGLA 331

Query: 63  RL 64
           R+
Sbjct: 332 RV 333

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 16/102 (15%)

Query: 16  HIALGLAE---GILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL--APVPNI 70
            IA    E   G+ +LH      +IH DIK  N LL      K+ DF +S      V   
Sbjct: 130 WIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRR 186

Query: 71  NGVVG-------HVSIVVKGTHTQQLTEKSDIYGLGIACLYM 105
           N  +G        V I            KSD++ LGI  + M
Sbjct: 187 NTFIGTPYWMAPEV-IACDENPDATYDFKSDLWSLGITAIEM 227

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 21  LAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP 66
           LA  + Y H++    +IH DIK  N LL S    K+ DF  S  AP
Sbjct: 118 LANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAP 160

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
              R+ VS  + L++A  ++  + YL  +     IH ++ A N L+      KV DF +S
Sbjct: 309 ECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLS 365

Query: 63  RLAPVPNINGVVGHVSIVVKGT-----HTQQLTEKSDIYGLGI 100
           RL    +           +K T        + + KSD++  G+
Sbjct: 366 RLMT-GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGV 407

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 23/98 (23%)

Query: 15  LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVV 74
           +   L +   + YLH      +++ D+K  N +L  +   K+ D               +
Sbjct: 185 IAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSR---------I 231

Query: 75  GHVSIVVKGTH--------TQQLTEKSDIYGLGIACLY 104
                +  GT             T  +DIY +G   L 
Sbjct: 232 NSFGYLY-GTPGFQAPEIVRTGPTVATDIYTVGR-TLA 267

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 19/104 (18%)

Query: 16  HIALGLAE---GILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS-RLAPVPNIN 71
            IA  L E   G+ YLH       IH D+KA N LL    + ++ DF +S  LA   +I 
Sbjct: 122 TIATILREVLEGLEYLHKNG---QIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDIT 178

Query: 72  GVVGHVSIVVKGT----------HTQQLTEKSDIYGLGIACLYM 105
                 + V  GT            +    K+DI+  GI  + +
Sbjct: 179 RNKVRKTFV--GTPCWMAPEVMEQVRGYDFKADIWSFGITAIEL 220

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 38/113 (33%)

Query: 16  HIALGLAE---GILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING 72
            I +   +    + +LH++    IIH D+KA N L+  +   ++ DF            G
Sbjct: 118 QIQVVCRQMLEALNFLHSKR---IIHRDLKAGNVLMTLEGDIRLADF------------G 162

Query: 73  VVGHVS--------------------IVVKGTHTQQLTEKSDIYGLGIACLYM 105
           V                         ++ +         K+DI+ LGI  + M
Sbjct: 163 VSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEM 215

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
           SR R  +     L  +L + E + YL        +H D+ A N L+      KV DF ++
Sbjct: 280 SRGRSVLGGDCLLKFSLDVCEAMEYL---EGNNFVHRDLAARNVLVSEDNVAKVSDFGLT 336

Query: 63  R 63
           +
Sbjct: 337 K 337

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 27/109 (24%)

Query: 15  LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--- 71
           L +  GL     Y+H+ +   ++H DIK +N  +     P     E        N     
Sbjct: 122 LQVGRGLR----YIHSMS---LVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFK 174

Query: 72  ----GVVGHVS--IVVKGT----------HTQQLTEKSDIYGLGIACLY 104
               G V  +S   V +G                  K+DI+ L +  + 
Sbjct: 175 IGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALAL-TVV 222

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
             + ++   +   L +A+G+ YL   A    +H D+ A N +LD KFT KV DF ++R
Sbjct: 122 THNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLAR 176

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 33/108 (30%)

Query: 16  HIALGLAE---GILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING 72
            IA  L     G+ YLH       IH DIKA N LL+++   K+ DF            G
Sbjct: 126 EIATILQSTLKGLEYLHFMR---KIHRDIKAGNILLNTEGHAKLADF------------G 170

Query: 73  VVGHVSIVVKGTHT---------------QQLTEKSDIYGLGIACLYM 105
           V G ++  +   +T                     +DI+ LGI  + M
Sbjct: 171 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEM 218

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
             + ++   +   L +A+G+ +L   A    +H D+ A N +LD KFT KV DF ++R
Sbjct: 186 THNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLAR 240

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 16  HIALGLAE---GILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDF 59
            IA         + YLH +    +IH DIK+ + LL      K+ DF
Sbjct: 142 QIATVCEAVLQALAYLHAQG---VIHRDIKSDSILLTLDGRVKLSDF 185

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 28/181 (15%), Positives = 65/181 (35%), Gaps = 45/181 (24%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKAT--------NTLLDSKF 52
           + ++  +  SL  +        E  + + +      I+ ++K           +++D   
Sbjct: 407 VVNKLHKY-SLVEK-----QPKESTISIPS------IYLELKVKLENEYALHRSIVDHYN 454

Query: 53  TPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH--TQQLTEKSDIYGLGIACLYMGLYSF 110
            PK FD +   L P         H+     G H    +  E+  ++ +    +++     
Sbjct: 455 IPKTFDSD--DLIPPYLDQYFYSHI-----GHHLKNIEHPERMTLFRM----VFLDF--- 500

Query: 111 EYLKRFMSLALKYCEDETKARPSMLEVARQLENISSMLPESDTIPTESDISASGEILEYF 170
               RF+   +++      A  S+L   +QL+     + ++D    E  ++A    +  F
Sbjct: 501 ----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY-ERLVNA----ILDF 551

Query: 171 L 171
           L
Sbjct: 552 L 552

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 33/108 (30%)

Query: 16  HIALGLAE---GILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING 72
            IA  L E   G+ YLH+E     IH DIKA N LL      K+ DF            G
Sbjct: 120 QIATILREILKGLDYLHSEK---KIHRDIKAANVLLSEHGEVKLADF------------G 164

Query: 73  VVGHVSIVVKGTHT-------------QQLT--EKSDIYGLGIACLYM 105
           V G ++      +T             +Q     K+DI+ LGI  + +
Sbjct: 165 VAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL 212

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 21/97 (21%)

Query: 15  LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR-LAPVPNINGV 73
               L LA    +LH++    ++H D+K  N  L  +   K+ DF +   L         
Sbjct: 164 RDTLLALA----HLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQ 216

Query: 74  VGHVSI------VVKGTHTQQLTEKSDIYGLGIACLY 104
            G          +++G++       +D++ LG+  + 
Sbjct: 217 EG--DPRYMAPELLQGSY----GTAADVFSLGL-TIL 246

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 16  HIALGLAE---GILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDF 59
            IA    E    + +LH+     +IH DIK+ N LL    + K+ DF
Sbjct: 117 QIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDF 160

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 21  LAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP 66
           LA+ + Y H      +IH DIK  N L+  K   K+ DF  S  AP
Sbjct: 123 LADALHYCHERK---VIHRDIKPENLLMGYKGELKIADFGWSVHAP 165

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 21  LAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDF 59
           +  G  YLH      +IH D+K  N  L+     K+ DF
Sbjct: 150 IVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDF 185

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 21  LAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDF 59
           L   + YL  +    IIH DIK  N ++   FT K+ DF
Sbjct: 139 LVSAVGYLRLKD---IIHRDIKDENIVIAEDFTIKLIDF 174

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 37.6 bits (88), Expect = 9e-04
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL 64
            + +  +  L +   + EG+ +L        IH D+ A N L+D     KV DF ++R 
Sbjct: 98  GKGLEPSQLLEMCYDVCEGMAFL---ESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRY 153

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 37.5 bits (88), Expect = 9e-04
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 21  LAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDF 59
           +  G+LYLH+     I+H D+  +N LL      K+ DF
Sbjct: 121 IITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADF 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.98
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.97
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.97
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.97
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.97
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.97
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.96
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.96
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.96
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.96
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.96
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.96
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.96
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.96
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.96
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.96
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.96
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.96
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.95
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.95
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.95
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.95
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.95
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.95
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.95
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.95
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.95
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.95
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.95
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.95
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.95
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.95
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.95
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.95
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.95
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.95
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.95
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.95
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.95
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.95
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.95
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.95
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.95
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.95
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.95
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.95
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.95
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.95
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.95
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.95
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.95
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.95
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.95
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.95
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.95
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.95
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.95
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.95
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.95
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.95
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.95
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.95
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.95
3niz_A	311	Rhodanese family protein; structural genomics, str	99.95
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.95
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.95
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.95
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.95
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.95
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.95
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.95
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.95
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.95
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.95
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.95
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.95
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.95
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.95
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.95
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.95
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.95
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.94
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.94
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.94
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.94
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.94
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.94
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.94
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.94
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.94
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.94
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.94
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.94
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.94
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.94
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.94
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.94
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.94
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.94
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.94
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.94
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.94
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.94
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.94
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.94
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.94
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.94
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.94
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.94
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.94
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.94
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.94
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.94
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.94
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.94
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.94
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.94
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.94
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.94
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.94
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.94
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.94
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.94
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.94
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.94
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.94
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.94
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.94
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.94
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.94
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.94
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.94
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.94
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.94
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.94
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.94
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.94
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.94
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.94
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.94
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.94
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.94
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.94
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.94
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.94
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.94
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.94
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.94
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.94
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.94
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.94
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.94
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.94
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.94
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.94
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.93
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.93
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.93
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.93
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.93
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.93
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.93
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.93
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.93
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.93
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.93
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.93
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.93
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.93
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.93
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.93
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.93
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.93
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.93
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.93
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.93
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.93
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.93
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.93
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.93
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.93
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.93
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.93
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.93
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.93
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.93
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.93
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.93
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.93
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.93
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.93
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.93
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.93
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.93
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.93
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.93
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.93
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.93
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.93
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.93
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.93
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.93
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.93
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.93
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.93
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.93
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.93
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.93
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.93
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.93
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.93
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.93
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.93
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.93
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.93
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.92
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.92
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.92
3bhy_A	283	Death-associated protein kinase 3; death associate	99.92
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.92
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.92
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.92
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.92
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.92
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.92
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.92
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.92
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.92
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.92
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.92
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.92
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.92
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.92
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.92
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.91
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.91
3uqc_A	286	Probable conserved transmembrane protein; structur	99.9
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.9
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.85
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.78
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.26
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.24
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.18
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.64
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.64
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.62
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.51
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.43
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	97.4
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	96.54
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	96.5
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	95.78
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	95.63
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	94.71
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	94.63
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	94.16
3ats_A	357	Putative uncharacterized protein; hypothetical pro	93.6
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	93.43
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	93.26
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	92.58
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	92.25
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	92.23
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	92.05
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	91.9
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	91.59
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	90.76
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	89.8
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	89.64
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	89.31
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	89.2
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	87.18
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	86.23
3mes_A	424	Choline kinase; malaria, structural genomics, stru	84.67
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	82.95

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=226.83  Aligned_cols=142  Identities=23%  Similarity=0.343  Sum_probs=118.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~   80 (176)
                      .+..+++.+++.|+.|+|.||+|||+++   ||||||||+|||++.++.+||+|||+++......    .....|+..|.
T Consensus       125 ~~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ym  201 (307)
T 3omv_A          125 QETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWM  201 (307)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCcc
Confidence            3467999999999999999999999999   9999999999999999999999999998654321    22345666666


Q ss_pred             ecCCC----CCCCCcccchhhHhHHHHHHhccChHHH-----------------------------HHHHHHHHhhcccC
Q 044320           81 VKGTH----TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------------KRFMSLALKYCEDE  127 (176)
Q Consensus        81 ~~~~~----~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------------~~l~~l~~~~~~~~  127 (176)
                      +|+..    ...|+.++|||||||++|||+++..||.                             ..+.+++.+||+.+
T Consensus       202 APE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~d  281 (307)
T 3omv_A          202 APEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKV  281 (307)
T ss_dssp             CHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSS
T ss_pred             CHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHcCCC
Confidence            66643    3468999999999999999998888763                             24788999999999


Q ss_pred             CCCCCCHHHHHHHHHhhhhcCC
Q 044320          128 TKARPSMLEVARQLENISSMLP  149 (176)
Q Consensus       128 p~~Rp~~~~i~~~l~~~~~~~~  149 (176)
                      |++||||.++++.|+.++..+|
T Consensus       282 P~~RPs~~ei~~~Le~l~~~lp  303 (307)
T 3omv_A          282 KEERPLFPQILSSIELLQHSLP  303 (307)
T ss_dssp             STTSCCHHHHHHHHHHHHTTCC
T ss_pred             HhHCcCHHHHHHHHHHHhccCC
Confidence            9999999999999998887654

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=2.8e-36  Score=226.19  Aligned_cols=142  Identities=20%  Similarity=0.302  Sum_probs=119.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~   80 (176)
                      ....|++.+++.|+.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++........    ...|+..|.
T Consensus       121 ~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ym  197 (299)
T 4asz_A          121 PPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWM  197 (299)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhc
Confidence            3467999999999999999999999999   999999999999999999999999999865433221    223444444


Q ss_pred             ecC-CCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKG-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +|+ .....++.++|||||||++|||.+ +..||.                        .++.+++.+||+.+|++||||
T Consensus       198 APE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~  277 (299)
T 4asz_A          198 PPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNI  277 (299)
T ss_dssp             CHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCH
Confidence            444 447889999999999999999997 677763                        358999999999999999999


Q ss_pred             HHHHHHHHhhhhcCC
Q 044320          135 LEVARQLENISSMLP  149 (176)
Q Consensus       135 ~~i~~~l~~~~~~~~  149 (176)
                      .++++.|+++....|
T Consensus       278 ~~i~~~L~~~~~~~p  292 (299)
T 4asz_A          278 KGIHTLLQNLAKASP  292 (299)
T ss_dssp             HHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999999877543

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=2.6e-35  Score=223.65  Aligned_cols=139  Identities=18%  Similarity=0.265  Sum_probs=111.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~   81 (176)
                      ..+|++.+++.|+.|++.||+|||+++   ||||||||+|||++.++.+||+|||+++.......    ....|+..|.+
T Consensus       152 ~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymA  228 (329)
T 4aoj_A          152 PGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMP  228 (329)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEEEECCCC----------------CCCCGGGCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCC---eecccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccC
Confidence            356999999999999999999999999   99999999999999999999999999986543321    12334554444


Q ss_pred             -cCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           82 -KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 -~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                       +......++.++|||||||++|||++ +..||.                        .++.+++.+||+.+|++||||.
T Consensus       229 PE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~  308 (329)
T 4aoj_A          229 PESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIK  308 (329)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHH
T ss_pred             hhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCcccccHHHHHHHHHHcCcChhHCcCHH
Confidence             44457889999999999999999988 677652                        3588999999999999999999


Q ss_pred             HHHHHHHhhhhc
Q 044320          136 EVARQLENISSM  147 (176)
Q Consensus       136 ~i~~~l~~~~~~  147 (176)
                      +|++.|+.+...
T Consensus       309 ei~~~L~~l~~~  320 (329)
T 4aoj_A          309 DVHARLQALAQA  320 (329)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhC
Confidence            999999998765

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.1e-35  Score=223.82  Aligned_cols=136  Identities=16%  Similarity=0.253  Sum_probs=114.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~   81 (176)
                      +..|++.+++.|+.|||.||+|||+++   +|||||||+|||++.++.+||+|||+++......    .....|+..|.+
T Consensus       139 ~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymA  215 (308)
T 4gt4_A          139 KSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMA  215 (308)
T ss_dssp             ECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccC
Confidence            456999999999999999999999999   9999999999999999999999999998654322    122344444444


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+ .....++.++|||||||++|||.+ +..||.                        ..+.+++.+||+.+|++||+|.
T Consensus       216 PE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~  295 (308)
T 4gt4_A          216 PEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFK  295 (308)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCcccchHHHHHHHHHHcCCChhHCcCHH
Confidence            44 457889999999999999999987 566652                        3588999999999999999999


Q ss_pred             HHHHHHHhh
Q 044320          136 EVARQLENI  144 (176)
Q Consensus       136 ~i~~~l~~~  144 (176)
                      +|++.|+..
T Consensus       296 ei~~~L~a~  304 (308)
T 4gt4_A          296 DIHSRLRAW  304 (308)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHhc
Confidence            999999864

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=2.4e-35  Score=225.61  Aligned_cols=139  Identities=20%  Similarity=0.258  Sum_probs=117.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~   81 (176)
                      +..|++.+++.|+.|||.||+|||+++   ||||||||+|||++.++.+||+|||+++........    ...|+..|.+
T Consensus       179 ~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymA  255 (353)
T 4ase_A          179 KDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA  255 (353)
T ss_dssp             TTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCC
T ss_pred             cccCCHHHHHHHHHHHHHHHHhHhhCC---eecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccC
Confidence            456999999999999999999999999   999999999999999999999999999876543321    2234444444


Q ss_pred             -cCCCCCCCCcccchhhHhHHHHHHhc-cChHHH-------------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           82 -KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL-------------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        82 -~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                       +......|+.++|||||||++|||.+ +..||.                         .++.+++.+||+.+|++||||
T Consensus       256 PE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~  335 (353)
T 4ase_A          256 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTF  335 (353)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCcChhHCcCH
Confidence             44457889999999999999999987 666653                         258899999999999999999


Q ss_pred             HHHHHHHHhhhhc
Q 044320          135 LEVARQLENISSM  147 (176)
Q Consensus       135 ~~i~~~l~~~~~~  147 (176)
                      .++++.|+++...
T Consensus       336 ~eil~~L~~llq~  348 (353)
T 4ase_A          336 SELVEHLGNLLQA  348 (353)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=4.9e-35  Score=218.37  Aligned_cols=133  Identities=20%  Similarity=0.349  Sum_probs=116.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-CCCeEEeecCCcccCCCCCCCCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-KFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~   84 (176)
                      ...+++.++..++.||+.||+|||+++ ++|+||||||+|||++. ++.+||+|||+++...........|++.|.+|+.
T Consensus       123 ~~~l~~~~~~~~~~qi~~aL~ylH~~~-~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~  201 (290)
T 3fpq_A          123 FKVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEM  201 (290)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC-CCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCccCCcccCccccCHHH
Confidence            457999999999999999999999873 45999999999999975 7899999999998766555555668888888888


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                      ....|+.++|||||||++|||+++..||.                          .++.+++.+||..||++|||+.+++
T Consensus       202 ~~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l  281 (290)
T 3fpq_A          202 YEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL  281 (290)
T ss_dssp             GGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence            87889999999999999999999888873                          2478999999999999999999987


Q ss_pred             H
Q 044320          139 R  139 (176)
Q Consensus       139 ~  139 (176)
                      +
T Consensus       282 ~  282 (290)
T 3fpq_A          282 N  282 (290)
T ss_dssp             T
T ss_pred             c
Confidence            5

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=3.2e-34  Score=217.56  Aligned_cols=140  Identities=21%  Similarity=0.166  Sum_probs=117.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-CeEEeecCCcccCCCCCC-------CCccccc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF-TPKVFDFEISRLAPVPNI-------NGVVGHV   77 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~-~~~l~dfg~~~~~~~~~~-------~~~~~~~   77 (176)
                      ...|++.++..|+.|++.||+|||+++   |+||||||+|||++.+| .+||+|||+++.......       ....|++
T Consensus       144 ~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~  220 (336)
T 4g3f_A          144 MGCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTE  220 (336)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCCG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCc
Confidence            357999999999999999999999999   99999999999999887 699999999987643321       1235777


Q ss_pred             eeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCC
Q 044320           78 SIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKA  130 (176)
Q Consensus        78 ~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~  130 (176)
                      .|.+|+. .+..++.++||||+||++|||+++..||.                          ..+.+++.+||..||.+
T Consensus       221 ~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  300 (336)
T 4g3f_A          221 THMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVH  300 (336)
T ss_dssp             GGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             cccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHccCCHhH
Confidence            7766665 47789999999999999999998887763                          24789999999999999


Q ss_pred             CCCHHHHHHHHHhhhhcC
Q 044320          131 RPSMLEVARQLENISSML  148 (176)
Q Consensus       131 Rp~~~~i~~~l~~~~~~~  148 (176)
                      |||+.++++.|.......
T Consensus       301 R~sa~el~~~l~~~l~~~  318 (336)
T 4g3f_A          301 RASAMELRRKVGKALQEV  318 (336)
T ss_dssp             SCCHHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHhhh
Confidence            999999999998877654

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=6.4e-34  Score=213.99  Aligned_cols=141  Identities=21%  Similarity=0.279  Sum_probs=111.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCC-----CCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC------CCCccc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEA-----DPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN------INGVVG   75 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~-----~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~------~~~~~~   75 (176)
                      ..++++++.+++.|++.||+|||++.     .++|+||||||+|||++.++.+||+|||+++......      .....|
T Consensus        95 ~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~G  174 (303)
T 3hmm_A           95 YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVG  174 (303)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----C
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeecccccc
Confidence            46899999999999999999999871     1239999999999999999999999999997654322      112346


Q ss_pred             cceeeecCCCCC-------CCCcccchhhHhHHHHHHhccChH-------------------------------------
Q 044320           76 HVSIVVKGTHTQ-------QLTEKSDIYGLGIACLYMGLYSFE-------------------------------------  111 (176)
Q Consensus        76 ~~~~~~~~~~~~-------~~~~~~Dv~s~G~~l~~l~~~~~~-------------------------------------  111 (176)
                      +..|.+|+....       .++.++|||||||++|||.++..+                                     
T Consensus       175 T~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~  254 (303)
T 3hmm_A          175 TKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNI  254 (303)
T ss_dssp             CGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCC
T ss_pred             cccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCCC
Confidence            677776665422       357799999999999999765221                                     


Q ss_pred             --------HHHHHHHHHHhhcccCCCCCCCHHHHHHHHHhhhhc
Q 044320          112 --------YLKRFMSLALKYCEDETKARPSMLEVARQLENISSM  147 (176)
Q Consensus       112 --------~~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~~~~~~  147 (176)
                              .+..+.+++.+||..+|++||||.++++.|+++...
T Consensus       255 p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          255 PNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             CGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence                    223578899999999999999999999999988764

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1.2e-33  Score=215.02  Aligned_cols=131  Identities=18%  Similarity=0.221  Sum_probs=114.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~~   84 (176)
                      ..+++.++..|+.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++......  .....|+++|.+|+.
T Consensus       165 ~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEv  241 (346)
T 4fih_A          165 TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEL  241 (346)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCcCcCCHHH
Confidence            46999999999999999999999999   9999999999999999999999999998765432  334567777776665


Q ss_pred             C-CCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           85 H-TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        85 ~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      . ...|+.++||||+||++|||+++..||.                          .++.+++.+||..||++|||+.++
T Consensus       242 l~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~  321 (346)
T 4fih_A          242 ISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAEL  321 (346)
T ss_dssp             HTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             HCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence            4 6779999999999999999999988873                          247899999999999999999998


Q ss_pred             HHH
Q 044320          138 ARQ  140 (176)
Q Consensus       138 ~~~  140 (176)
                      ++.
T Consensus       322 l~H  324 (346)
T 4fih_A          322 LKH  324 (346)
T ss_dssp             TTC
T ss_pred             hcC
Confidence            763

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=2.2e-34  Score=219.37  Aligned_cols=133  Identities=20%  Similarity=0.239  Sum_probs=113.8

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeee
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVV   81 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~   81 (176)
                      +++..+++.+++.|+.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++......  .....|++.|.+
T Consensus       117 ~~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmA  193 (350)
T 4b9d_A          117 QKGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLS  193 (350)
T ss_dssp             TTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHHHEEECCCCCEEEcccccceeecCCcccccccCCCccccC
Confidence            34566899999999999999999999999   9999999999999999999999999998765432  122346666666


Q ss_pred             cCCC-CCCCCcccchhhHhHHHHHHhccChHHH------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTH-TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      |+.. +..|+.++||||+||++|||+++..||.                        .++.+++.+||..||++|||+.+
T Consensus       194 PE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e  273 (350)
T 4b9d_A          194 PEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNS  273 (350)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHH
Confidence            6554 6789999999999999999998887762                        35889999999999999999999


Q ss_pred             HHH
Q 044320          137 VAR  139 (176)
Q Consensus       137 i~~  139 (176)
                      +++
T Consensus       274 ~l~  276 (350)
T 4b9d_A          274 ILE  276 (350)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            976

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=2e-33  Score=208.08  Aligned_cols=131  Identities=19%  Similarity=0.238  Sum_probs=105.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~~   84 (176)
                      +..+++.++..++.|++.||+|||+++   |+||||||+||+++.++.+||+|||+++...... .....|++.|.+|+.
T Consensus       106 ~~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE~  182 (275)
T 3hyh_A          106 RDKMSEQEARRFFQQIISAVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEV  182 (275)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTCCEEECCSSCC---------------CTTSCHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCChHHeEECCCCCEEEeecCCCeecCCCCccCCeeECcccCChhh
Confidence            467999999999999999999999999   9999999999999999999999999998765433 233457777777766


Q ss_pred             C-CCCC-CcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           85 H-TQQL-TEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        85 ~-~~~~-~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      . +..+ +.++||||+||++|+|+++..||.                       .++.+++.+||..||++|||++++++
T Consensus       183 ~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          183 ISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ  262 (275)
T ss_dssp             HSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             hcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            5 4444 579999999999999999888763                       35889999999999999999999987

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.98  E-value=7.9e-33  Score=215.33  Aligned_cols=131  Identities=18%  Similarity=0.221  Sum_probs=113.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~~   84 (176)
                      ..+++.++..|+.||+.||+|||+++   |+||||||+|||++.+|.+||+|||+++......  .....|+.+|++|+.
T Consensus       242 ~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEv  318 (423)
T 4fie_A          242 TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEL  318 (423)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccCcCcCCHHH
Confidence            46999999999999999999999999   9999999999999999999999999998765432  334567777776665


Q ss_pred             C-CCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           85 H-TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        85 ~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      . ...|+.++||||+||++|||+++..||.                          ..+.+++.+||..||++|||+.++
T Consensus       319 l~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~el  398 (423)
T 4fie_A          319 ISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAEL  398 (423)
T ss_dssp             HTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             HCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence            4 6779999999999999999999988873                          247899999999999999999998


Q ss_pred             HHH
Q 044320          138 ARQ  140 (176)
Q Consensus       138 ~~~  140 (176)
                      ++.
T Consensus       399 l~H  401 (423)
T 4fie_A          399 LKH  401 (423)
T ss_dssp             TTC
T ss_pred             hcC
Confidence            763

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.97  E-value=5.8e-33  Score=208.23  Aligned_cols=126  Identities=20%  Similarity=0.161  Sum_probs=107.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++......  .....|++.|.+|+
T Consensus       120 ~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE  196 (304)
T 3ubd_A          120 EVMFTEEDVKFYLAELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPE  196 (304)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHeEEcCCCCEEecccccceeccCCCccccccccCcccCCHH
Confidence            457999999999999999999999999   9999999999999999999999999998653322  23445777777666


Q ss_pred             CC-CCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           84 TH-TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        84 ~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      .. ...++.++||||+||++|||+++..||.                       .++.+++.+||..||++||++
T Consensus       197 ~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~ta  271 (304)
T 3ubd_A          197 VVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGA  271 (304)
T ss_dssp             HHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred             HhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence            54 7789999999999999999999988873                       358899999999999999984

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.97  E-value=4.7e-33  Score=209.03  Aligned_cols=130  Identities=20%  Similarity=0.237  Sum_probs=112.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~   81 (176)
                      ...|++.++..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++......    .....|++.|.+
T Consensus       126 ~~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmA  202 (311)
T 4aw0_A          126 IGSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVS  202 (311)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCC
Confidence            457999999999999999999999999   9999999999999999999999999998764322    223457777777


Q ss_pred             cCCC-CCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           82 KGTH-TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        82 ~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      |+.. +..++.++||||+||++|+|+++..||.                       .++.+++.+|+..||++|||+.++
T Consensus       203 PEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~  282 (311)
T 4aw0_A          203 PELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEM  282 (311)
T ss_dssp             HHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGG
T ss_pred             HHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCcccCHHHHHHHHHHccCCHhHCcChHHH
Confidence            6655 6778999999999999999999988873                       357899999999999999999876


Q ss_pred             H
Q 044320          138 A  138 (176)
Q Consensus       138 ~  138 (176)
                      +
T Consensus       283 ~  283 (311)
T 4aw0_A          283 E  283 (311)
T ss_dssp             T
T ss_pred             c
Confidence            4

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.97  E-value=1.1e-31  Score=201.36  Aligned_cols=128  Identities=21%  Similarity=0.287  Sum_probs=98.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--------------CCcc
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--------------NGVV   74 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--------------~~~~   74 (176)
                      .++..++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++.......              ....
T Consensus       115 ~~~~~~~~i~~qi~~al~ylH~~~---IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (299)
T 4g31_A          115 RERSVCLHIFLQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQV  191 (299)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCCCC--------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHCc---CccccCcHHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcc
Confidence            556778999999999999999999   99999999999999999999999999987543221              1234


Q ss_pred             ccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHH----------------------HHHHHHHHHhhcccCCCCC
Q 044320           75 GHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY----------------------LKRFMSLALKYCEDETKAR  131 (176)
Q Consensus        75 ~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------~~~l~~l~~~~~~~~p~~R  131 (176)
                      |++.|.+|+. .+..|+.++||||+||++|||++.....                      .....+++.+||+.+|++|
T Consensus       192 GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~Pf~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~~L~~dP~~R  271 (299)
T 4g31_A          192 GTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMER  271 (299)
T ss_dssp             CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHTCSSGGGS
T ss_pred             cCccccCHHHHcCCCCCCHHHHHHHHHHHHHHccCCCCccHHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHcCCChhHC
Confidence            6666666554 4678999999999999999997522111                      0135679999999999999


Q ss_pred             CCHHHHHH
Q 044320          132 PSMLEVAR  139 (176)
Q Consensus       132 p~~~~i~~  139 (176)
                      ||+.++++
T Consensus       272 ps~~eil~  279 (299)
T 4g31_A          272 PEAINIIE  279 (299)
T ss_dssp             CCHHHHHT
T ss_pred             cCHHHHhc
Confidence            99999876

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.5e-31  Score=207.56  Aligned_cols=133  Identities=20%  Similarity=0.218  Sum_probs=111.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC------CCCCccccce
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP------NINGVVGHVS   78 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~------~~~~~~~~~~   78 (176)
                      .+..|++.++..|+.||+.||.|||+++   |+||||||+|||++.++.+|++|||+++.....      ......|+++
T Consensus       151 ~~~~l~~~~~~~~~~qil~al~ylH~~~---iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~  227 (398)
T 4b99_A          151 SSQPLTLEHVRYFLYQLLRGLKYMHSAQ---VIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRW  227 (398)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCT
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHCc---CcCCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChH
Confidence            3567999999999999999999999999   999999999999999999999999999865332      1223467777


Q ss_pred             eeecCCC-C-CCCCcccchhhHhHHHHHHhccChHHH-------------------------------------------
Q 044320           79 IVVKGTH-T-QQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------------------------  113 (176)
Q Consensus        79 ~~~~~~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------------------------  113 (176)
                      |.+|+.. + ..++.++||||+||++|||+++..||.                                           
T Consensus       228 Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~  307 (398)
T 4b99_A          228 YRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQP  307 (398)
T ss_dssp             TCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCC
T ss_pred             hcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCC
Confidence            7777754 3 457899999999999999998887762                                           


Q ss_pred             -----------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 -----------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 -----------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                 .++.+++.+||..||.+|||+.++++.
T Consensus       308 ~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  345 (398)
T 4b99_A          308 VPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH  345 (398)
T ss_dssp             CCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             CCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                       245689999999999999999998763

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.97  E-value=4.4e-31  Score=202.80  Aligned_cols=103  Identities=17%  Similarity=0.241  Sum_probs=85.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-CCeEEeecCCcccCCCCC----------------
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEISRLAPVPN----------------   69 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-~~~~l~dfg~~~~~~~~~----------------   69 (176)
                      +.+++.++..++.|++.||+|||++|   |+||||||+|||++.+ +.+||+|||+++......                
T Consensus       112 ~~l~~~~~~~~~~qll~al~ylH~~g---IiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~  188 (361)
T 4f9c_A          112 NSLSFQEVREYMLNLFKALKRIHQFG---IVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERC  188 (361)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC---------
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCcccccccccccccccccc
Confidence            35899999999999999999999999   9999999999999876 799999999997543221                


Q ss_pred             --------------CCCccccceeeecCCC-C-CCCCcccchhhHhHHHHHHhccChHH
Q 044320           70 --------------INGVVGHVSIVVKGTH-T-QQLTEKSDIYGLGIACLYMGLYSFEY  112 (176)
Q Consensus        70 --------------~~~~~~~~~~~~~~~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~~  112 (176)
                                    .....|+++|.+|+.. + ..++.++||||+||++|+|++|..||
T Consensus       189 ~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf  247 (361)
T 4f9c_A          189 SQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPF  247 (361)
T ss_dssp             -----------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred             ccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCC
Confidence                          1123477777777754 3 45899999999999999999988766

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.96  E-value=1.7e-30  Score=211.18  Aligned_cols=131  Identities=17%  Similarity=0.134  Sum_probs=116.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      ...|++.++..|+.||+.||+|||+++   ||||||||+|||++.+|.+||+|||+++...........|++.|.+|+..
T Consensus       286 ~~~l~E~~a~~y~~qIl~aL~yLH~~g---IiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~~~t~~GTp~YmAPEvl  362 (689)
T 3v5w_A          286 HGVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVL  362 (689)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTSCEEECCCTTCEECSSCCCCSCCSCGGGCCHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchHHeEEeCCCCEEecccceeeecCCCCCCCccCCcCccCHHHH
Confidence            457999999999999999999999999   99999999999999999999999999988776666667788888888765


Q ss_pred             --CCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCC----
Q 044320           86 --TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPS----  133 (176)
Q Consensus        86 --~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~----  133 (176)
                        +..|+.++|+||+||++|||++|..||.                          .++.+++.+||..||.+|++    
T Consensus       363 ~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~  442 (689)
T 3v5w_A          363 QKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGR  442 (689)
T ss_dssp             STTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSS
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCCccCCHHHHHHHHHHccCCHhHCCCCCCC
Confidence              3578999999999999999999998883                          24789999999999999998    


Q ss_pred             -HHHHHH
Q 044320          134 -MLEVAR  139 (176)
Q Consensus       134 -~~~i~~  139 (176)
                       ++++++
T Consensus       443 ga~ei~~  449 (689)
T 3v5w_A          443 GAQEVKE  449 (689)
T ss_dssp             THHHHTT
T ss_pred             CHHHHhc
Confidence             577654

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.96  E-value=1.6e-29  Score=194.17  Aligned_cols=149  Identities=14%  Similarity=0.122  Sum_probs=121.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC--CCCCeEEeecCCcccCCCCCC---------CCcc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD--SKFTPKVFDFEISRLAPVPNI---------NGVV   74 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~--~~~~~~l~dfg~~~~~~~~~~---------~~~~   74 (176)
                      ...+++.+++.++.|++.||+|||+++   ++||||||+||+++  .++.++|+|||+++.......         ....
T Consensus       146 ~~~l~~~~~~~i~~qi~~~l~~lH~~~---iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~  222 (364)
T 3op5_A          146 AKRFSRKTVLQLSLRILDILEYIHEHE---YVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHD  222 (364)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEEecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccC
Confidence            467999999999999999999999999   99999999999998  889999999999976543221         1122


Q ss_pred             ccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH----------------------------------HHHHHH
Q 044320           75 GHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------------KRFMSL  119 (176)
Q Consensus        75 ~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------------~~l~~l  119 (176)
                      |+..+.+|+. .+..++.++||||||+++|+|+++..||.                                  ..+.++
T Consensus       223 gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (364)
T 3op5_A          223 GTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKY  302 (364)
T ss_dssp             CCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTTCCCHHHHHH
T ss_pred             CCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcccccCHHHHHHH
Confidence            4444544443 46678999999999999999988877763                                  246789


Q ss_pred             HHhhcccCCCCCCCHHHHHHHHHhhhhcCCCCCCCCCC
Q 044320          120 ALKYCEDETKARPSMLEVARQLENISSMLPESDTIPTE  157 (176)
Q Consensus       120 ~~~~~~~~p~~Rp~~~~i~~~l~~~~~~~~~~~~~~~~  157 (176)
                      +..||..+|.+||++.++++.|+.+..........+..
T Consensus       303 i~~cl~~~p~~RP~~~~l~~~l~~~~~~~~~~~~~~~d  340 (364)
T 3op5_A          303 METVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLD  340 (364)
T ss_dssp             HHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred             HHHHhcCCCCCCCCHHHHHHHHHHHHHHcCCCcCCccc
Confidence            99999999999999999999999998876554444333

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.96  E-value=2.4e-29  Score=187.69  Aligned_cols=145  Identities=17%  Similarity=0.203  Sum_probs=118.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCC-----eEEeecCCcccCCCCCC---------C
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFT-----PKVFDFEISRLAPVPNI---------N   71 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~-----~~l~dfg~~~~~~~~~~---------~   71 (176)
                      +..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.     ++|+|||+++.......         .
T Consensus       100 ~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~  176 (298)
T 1csn_A          100 GRKFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKK  176 (298)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCcc
Confidence            456999999999999999999999999   999999999999987765     99999999976543321         1


Q ss_pred             CccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH-------------------------------HHHHHH
Q 044320           72 GVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------------KRFMSL  119 (176)
Q Consensus        72 ~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------------~~l~~l  119 (176)
                      ...+...+.+|+. .+..++.++||||||+++|++.++..||.                               ..+.++
T Consensus       177 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  256 (298)
T 1csn_A          177 NLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKY  256 (298)
T ss_dssp             CCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHH
T ss_pred             CCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHH
Confidence            2234444444443 46678999999999999999988777652                               257899


Q ss_pred             HHhhcccCCCCCCCHHHHHHHHHhhhhcCCCCCC
Q 044320          120 ALKYCEDETKARPSMLEVARQLENISSMLPESDT  153 (176)
Q Consensus       120 ~~~~~~~~p~~Rp~~~~i~~~l~~~~~~~~~~~~  153 (176)
                      +.+||..+|.+||++.++++.|+++.........
T Consensus       257 i~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~~~~  290 (298)
T 1csn_A          257 MHYARNLAFDATPDYDYLQGLFSKVLERLNTTED  290 (298)
T ss_dssp             HHHHHHCCTTCCCCHHHHHHHHHHHHHHTTCCSC
T ss_pred             HHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999999987654433

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.96  E-value=1.9e-29  Score=187.94  Aligned_cols=144  Identities=19%  Similarity=0.238  Sum_probs=119.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe---CCCCCeEEeecCCcccCCCCCC---------CCc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL---DSKFTPKVFDFEISRLAPVPNI---------NGV   73 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~---~~~~~~~l~dfg~~~~~~~~~~---------~~~   73 (176)
                      ...+++.+++.++.|++.||.|||+++   ++||||||+||++   +.++.++|+|||++........         ...
T Consensus        99 ~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~  175 (296)
T 4hgt_A           99 SRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNL  175 (296)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCccccc
Confidence            457999999999999999999999999   9999999999999   7889999999999976543221         122


Q ss_pred             cccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHH-------------------------------HHHHHHHHH
Q 044320           74 VGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------LKRFMSLAL  121 (176)
Q Consensus        74 ~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------~~~l~~l~~  121 (176)
                      .+...+.+|+. ....++.++||||+|+++|++.++..||                               +..+.+++.
T Consensus       176 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  255 (296)
T 4hgt_A          176 TGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLN  255 (296)
T ss_dssp             CSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHH
T ss_pred             CCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHHHHHH
Confidence            34444444443 4667899999999999999998887765                               245889999


Q ss_pred             hhcccCCCCCCCHHHHHHHHHhhhhcCCCCC
Q 044320          122 KYCEDETKARPSMLEVARQLENISSMLPESD  152 (176)
Q Consensus       122 ~~~~~~p~~Rp~~~~i~~~l~~~~~~~~~~~  152 (176)
                      +||..+|++||++.++++.|+.+......+.
T Consensus       256 ~~l~~~p~~Rpt~~~l~~~l~~~~~~~~~~~  286 (296)
T 4hgt_A          256 FCRSLRFDDKPDYSYLRQLFRNLFHRQGFSY  286 (296)
T ss_dssp             HHHTSCTTCCCCHHHHHHHHHHHHHHHTCCT
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHhCCCc
Confidence            9999999999999999999999988765443

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.96  E-value=4.6e-29  Score=186.01  Aligned_cols=145  Identities=19%  Similarity=0.231  Sum_probs=118.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC---CCCCeEEeecCCcccCCCCCC---------CCc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD---SKFTPKVFDFEISRLAPVPNI---------NGV   73 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~---~~~~~~l~dfg~~~~~~~~~~---------~~~   73 (176)
                      +..+++.+++.++.|++.||.|||+++   ++||||||+||+++   .++.++|+|||++........         ...
T Consensus        99 ~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~  175 (296)
T 3uzp_A           99 SRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNL  175 (296)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccccccccccccccccc
Confidence            457999999999999999999999999   99999999999994   788999999999876543321         122


Q ss_pred             cccceeeecC-CCCCCCCcccchhhHhHHHHHHhccChHHH-------------------------------HHHHHHHH
Q 044320           74 VGHVSIVVKG-THTQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------------KRFMSLAL  121 (176)
Q Consensus        74 ~~~~~~~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------------~~l~~l~~  121 (176)
                      .+...+.+|+ ..+..++.++||||||+++|++.++..||.                               ..+.+++.
T Consensus       176 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  255 (296)
T 3uzp_A          176 TGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLN  255 (296)
T ss_dssp             CSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHH
T ss_pred             ccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHHHHHH
Confidence            3444444443 346678999999999999999988776652                               35789999


Q ss_pred             hhcccCCCCCCCHHHHHHHHHhhhhcCCCCCC
Q 044320          122 KYCEDETKARPSMLEVARQLENISSMLPESDT  153 (176)
Q Consensus       122 ~~~~~~p~~Rp~~~~i~~~l~~~~~~~~~~~~  153 (176)
                      +||..+|.+||++.++++.|+.+......+..
T Consensus       256 ~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~~~  287 (296)
T 3uzp_A          256 FCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYD  287 (296)
T ss_dssp             HHHTSCTTCCCCHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHhcCcCcCCCHHHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999887654433

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.96  E-value=4.4e-29  Score=192.32  Aligned_cols=139  Identities=18%  Similarity=0.247  Sum_probs=115.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~~   82 (176)
                      ..+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++.......    ....+...+.+|
T Consensus       198 ~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aP  274 (370)
T 2psq_A          198 EQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAP  274 (370)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhCC---eeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECH
Confidence            46899999999999999999999999   99999999999999999999999999986543321    112223334444


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      + .....++.++||||||+++|||++ +..||.                        ..+.+++.+||..+|.+||++.+
T Consensus       275 E~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~e  354 (370)
T 2psq_A          275 EALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQ  354 (370)
T ss_dssp             HHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            4 447778999999999999999988 655542                        36889999999999999999999


Q ss_pred             HHHHHHhhhhcC
Q 044320          137 VARQLENISSML  148 (176)
Q Consensus       137 i~~~l~~~~~~~  148 (176)
                      +++.|+++....
T Consensus       355 ll~~L~~il~~~  366 (370)
T 2psq_A          355 LVEDLDRILTLT  366 (370)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.96  E-value=5.7e-29  Score=188.73  Aligned_cols=146  Identities=17%  Similarity=0.279  Sum_probs=115.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcC---------CCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--------
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTE---------ADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--------   69 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~---------~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--------   69 (176)
                      ..+++.++..++.|++.||.|||+.         +   ++||||||+||+++.++.+||+|||++.......        
T Consensus       106 ~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~---ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~  182 (336)
T 3g2f_A          106 HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPA---ISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEED  182 (336)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCC---EECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC------
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhccccccccc---eeecccccceEEEcCCCcEEEeeccceeecccccccCccccc
Confidence            3458899999999999999999998         8   9999999999999999999999999997654321        


Q ss_pred             --CCCccccceeeecCCCC--------CCCCcccchhhHhHHHHHHhccChHH---------------------------
Q 044320           70 --INGVVGHVSIVVKGTHT--------QQLTEKSDIYGLGIACLYMGLYSFEY---------------------------  112 (176)
Q Consensus        70 --~~~~~~~~~~~~~~~~~--------~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------  112 (176)
                        .....|...+.+|+...        ..++.++||||||+++|+|+++..++                           
T Consensus       183 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (336)
T 3g2f_A          183 NAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQ  262 (336)
T ss_dssp             ---CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHH
T ss_pred             cccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHH
Confidence              11223555555555442        34567899999999999998774432                           


Q ss_pred             ----------------------HHHHHHHHHhhcccCCCCCCCHHHHHHHHHhhhhcCCCCCCCC
Q 044320          113 ----------------------LKRFMSLALKYCEDETKARPSMLEVARQLENISSMLPESDTIP  155 (176)
Q Consensus       113 ----------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~~~~~~~~~~~~~~  155 (176)
                                            +..+.+++.+||..+|++|||+.++++.|+.+.........++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~~~~  327 (336)
T 3g2f_A          263 VLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNKSVS  327 (336)
T ss_dssp             HHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC-----
T ss_pred             hhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhcccCC
Confidence                                  2358999999999999999999999999999999887665553

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.96  E-value=9.4e-29  Score=187.45  Aligned_cols=141  Identities=18%  Similarity=0.240  Sum_probs=117.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCC-----eEEeecCCcccCCCCCC---------C
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFT-----PKVFDFEISRLAPVPNI---------N   71 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~-----~~l~dfg~~~~~~~~~~---------~   71 (176)
                      +..+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.     ++|+|||+++.......         .
T Consensus        99 ~~~~~~~~~~~i~~qi~~~l~~LH~~~---iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~  175 (330)
T 2izr_A           99 DRTFSLKTVLMIAIQLISRMEYVHSKN---LIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHK  175 (330)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccC
Confidence            467999999999999999999999999   999999999999998876     99999999986543221         2


Q ss_pred             CccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHHH------------------------------HHHHHH
Q 044320           72 GVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYLK------------------------------RFMSLA  120 (176)
Q Consensus        72 ~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~------------------------------~l~~l~  120 (176)
                      ...|...+.+|+. .+..++.++||||||+++|+|+++..||..                              .+.+++
T Consensus       176 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~li  255 (330)
T 2izr_A          176 SLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFPEMATYL  255 (330)
T ss_dssp             CCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTTCHHHHHHH
T ss_pred             CcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhccChHHHHHH
Confidence            2334444544443 466789999999999999999888776521                              578899


Q ss_pred             HhhcccCCCCCCCHHHHHHHHHhhhhcCC
Q 044320          121 LKYCEDETKARPSMLEVARQLENISSMLP  149 (176)
Q Consensus       121 ~~~~~~~p~~Rp~~~~i~~~l~~~~~~~~  149 (176)
                      ..||..+|.+||++.++.+.|+.+.....
T Consensus       256 ~~~l~~~p~~RP~~~~l~~~l~~~~~~~~  284 (330)
T 2izr_A          256 RYVRRLDFFEKPDYDYLRKLFTDLFDRKG  284 (330)
T ss_dssp             HHHHHCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHHHHcC
Confidence            99999999999999999999998887653

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.96  E-value=5.7e-29  Score=186.98  Aligned_cols=142  Identities=24%  Similarity=0.374  Sum_probs=116.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--------------   71 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--------------   71 (176)
                      ...+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.++|+|||++.........              
T Consensus       102 ~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~  178 (310)
T 3s95_A          102 DSQYPWSQRVSFAKDIASGMAYLHSMN---IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKK  178 (310)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEECTTSCEEECCCTTCEECC-------------------
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCcCeEEECCCCCEEEeecccceeccccccccccccccccccccc
Confidence            567999999999999999999999999   999999999999999999999999999765432211              


Q ss_pred             --CccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHh
Q 044320           72 --GVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALK  122 (176)
Q Consensus        72 --~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~  122 (176)
                        ...|...+.+|+. ....++.++||||||+++|++.++..++.                          ..+.+++.+
T Consensus       179 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  258 (310)
T 3s95_A          179 RYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVR  258 (310)
T ss_dssp             -CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCTTCCTTHHHHHHH
T ss_pred             ccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCCCCCHHHHHHHHH
Confidence              2234444544443 46778999999999999999987654432                          358889999


Q ss_pred             hcccCCCCCCCHHHHHHHHHhhhhcCCC
Q 044320          123 YCEDETKARPSMLEVARQLENISSMLPE  150 (176)
Q Consensus       123 ~~~~~p~~Rp~~~~i~~~l~~~~~~~~~  150 (176)
                      ||..+|++||++.++++.|+.+...+..
T Consensus       259 ~l~~dP~~Rps~~~l~~~L~~l~~~~~~  286 (310)
T 3s95_A          259 CCDLDPEKRPSFVKLEHWLETLRMHLAG  286 (310)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred             HccCChhhCcCHHHHHHHHHHHHHhccC
Confidence            9999999999999999999998876543

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.96  E-value=3.8e-29  Score=189.51  Aligned_cols=142  Identities=19%  Similarity=0.267  Sum_probs=114.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Cccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~   80 (176)
                      ...+++.+++.++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||+++........     ...+...+.
T Consensus       145 ~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~  221 (325)
T 3kul_A          145 DGQFTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWT  221 (325)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGS
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCCccccc
Confidence            457999999999999999999999999   999999999999999999999999999876543211     111222233


Q ss_pred             ecC-CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKG-THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +|+ .....++.++||||||+++|++++ +..||                        +..+.+++.+||..+|.+||++
T Consensus       222 aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  301 (325)
T 3kul_A          222 APEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRF  301 (325)
T ss_dssp             CHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHccCChhhCcCH
Confidence            333 335678889999999999999988 76665                        2458899999999999999999


Q ss_pred             HHHHHHHHhhhhcCCC
Q 044320          135 LEVARQLENISSMLPE  150 (176)
Q Consensus       135 ~~i~~~l~~~~~~~~~  150 (176)
                      .++++.|+.+....+.
T Consensus       302 ~eil~~L~~l~~~~~~  317 (325)
T 3kul_A          302 SQIVSVLDALIRSPES  317 (325)
T ss_dssp             HHHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHHHhCccc
Confidence            9999999999886544

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.96  E-value=3.1e-29  Score=197.65  Aligned_cols=138  Identities=21%  Similarity=0.306  Sum_probs=112.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHT   86 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (176)
                      ..+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++..............|.+|+....
T Consensus       284 ~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~~  360 (450)
T 1k9a_A          284 SVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALRE  360 (450)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTSCEEECCCTTCEECC------CCCTTTSCHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEECCCCCEEEeeCCCcccccccccCCCCCcceeCHHHhcC
Confidence            44899999999999999999999999   999999999999999999999999998765433222222222344444447


Q ss_pred             CCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHHHHH
Q 044320           87 QQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVARQL  141 (176)
Q Consensus        87 ~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l  141 (176)
                      ..++.++||||||+++|||.+ +..||                        +..+.+++.+||..+|.+||++.++++.|
T Consensus       361 ~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L  440 (450)
T 1k9a_A          361 KKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQL  440 (450)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            789999999999999999987 66554                        24688999999999999999999999999


Q ss_pred             Hhhhhc
Q 044320          142 ENISSM  147 (176)
Q Consensus       142 ~~~~~~  147 (176)
                      +.+...
T Consensus       441 ~~i~~~  446 (450)
T 1k9a_A          441 EHIRTH  446 (450)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988764

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.95  E-value=1.2e-28  Score=190.45  Aligned_cols=144  Identities=18%  Similarity=0.239  Sum_probs=118.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~   81 (176)
                      ...+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++.......    ....+...+.+
T Consensus       185 ~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~a  261 (382)
T 3tt0_A          185 EEQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMA  261 (382)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSC
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeC
Confidence            356999999999999999999999999   99999999999999999999999999986543321    11222333333


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+ .....++.++||||||+++|++++ +..||.                        ..+.+++.+||..+|++||++.
T Consensus       262 PE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~  341 (382)
T 3tt0_A          262 PEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK  341 (382)
T ss_dssp             HHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHH
Confidence            33 447778999999999999999988 655542                        3588999999999999999999


Q ss_pred             HHHHHHHhhhhcCCCCC
Q 044320          136 EVARQLENISSMLPESD  152 (176)
Q Consensus       136 ~i~~~l~~~~~~~~~~~  152 (176)
                      ++++.|+++........
T Consensus       342 ell~~L~~~~~~~~~~~  358 (382)
T 3tt0_A          342 QLVEDLDRIVALTSNQE  358 (382)
T ss_dssp             HHHHHHHHHHHHSCSCC
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999988765443

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.95  E-value=4.4e-29  Score=188.84  Aligned_cols=138  Identities=23%  Similarity=0.317  Sum_probs=112.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcC----------CCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTE----------ADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----ING   72 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~----------~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~   72 (176)
                      ..+++.+++.++.|++.||+|||+.          +   ++||||||+||+++.++.+||+|||+++......    ...
T Consensus       116 ~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~---ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~  192 (322)
T 3soc_A          116 NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPA---ISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHG  192 (322)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECE---EECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTT
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCC---EEeCCCChHhEEECCCCeEEEccCCcccccccccCcccccc
Confidence            4589999999999999999999998          8   9999999999999999999999999997644322    122


Q ss_pred             ccccceeeecCCCC------CCCCcccchhhHhHHHHHHhccChHH----------------------------------
Q 044320           73 VVGHVSIVVKGTHT------QQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------  112 (176)
Q Consensus        73 ~~~~~~~~~~~~~~------~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------  112 (176)
                      ..+...+.+|+...      ..++.++||||||+++|+|.++..+|                                  
T Consensus       193 ~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (322)
T 3soc_A          193 QVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKR  272 (322)
T ss_dssp             CCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCC
T ss_pred             CccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCC
Confidence            34555555555432      24556889999999999999874433                                  


Q ss_pred             ------------HHHHHHHHHhhcccCCCCCCCHHHHHHHHHhhhhc
Q 044320          113 ------------LKRFMSLALKYCEDETKARPSMLEVARQLENISSM  147 (176)
Q Consensus       113 ------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~~~~~~  147 (176)
                                  +..+.+++.+||..+|++|||+.++++.|+++...
T Consensus       273 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          273 PVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             CCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence                        23388999999999999999999999999988764

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.95  E-value=6e-29  Score=190.13  Aligned_cols=146  Identities=14%  Similarity=0.133  Sum_probs=120.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC--CeEEeecCCcccCCCCCC---------CCcc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF--TPKVFDFEISRLAPVPNI---------NGVV   74 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~--~~~l~dfg~~~~~~~~~~---------~~~~   74 (176)
                      +..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++  .++|+|||+++.......         ....
T Consensus       153 ~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~  229 (352)
T 2jii_A          153 KHVLSERSVLQVACRLLDALEFLHENE---YVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHE  229 (352)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCcccccccccccccc
Confidence            467999999999999999999999999   99999999999999988  899999999976543221         1123


Q ss_pred             ccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHH----------------------------------HHHHHHH
Q 044320           75 GHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------LKRFMSL  119 (176)
Q Consensus        75 ~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------~~~l~~l  119 (176)
                      +...+.+|+. .+..++.++||||||+++|+|.++..||                                  +..+.++
T Consensus       230 gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  309 (352)
T 2jii_A          230 GDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKY  309 (352)
T ss_dssp             SCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHH
T ss_pred             CCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHH
Confidence            4444444443 4567899999999999999998887654                                  2457889


Q ss_pred             HHhhcccCCCCCCCHHHHHHHHHhhhhcCCCCCCC
Q 044320          120 ALKYCEDETKARPSMLEVARQLENISSMLPESDTI  154 (176)
Q Consensus       120 ~~~~~~~~p~~Rp~~~~i~~~l~~~~~~~~~~~~~  154 (176)
                      +.+||..+|.+||++.++++.|+++..........
T Consensus       310 i~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~~~~~  344 (352)
T 2jii_A          310 LKVVMALTYEEKPPYAMLRNNLEALLQDLRVSPYD  344 (352)
T ss_dssp             HHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCCTTS
T ss_pred             HHHHHhCChhhCCCHHHHHHHHHHHHHhcCCCcCc
Confidence            99999999999999999999999999887554433

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.95  E-value=9.5e-29  Score=188.61  Aligned_cols=138  Identities=18%  Similarity=0.199  Sum_probs=114.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC--CeEEeecCCcccCCCCCC---------CCcccc
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF--TPKVFDFEISRLAPVPNI---------NGVVGH   76 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~--~~~l~dfg~~~~~~~~~~---------~~~~~~   76 (176)
                      .+++.+++.++.|++.||+|||+++   ++||||||+||+++.++  .++|+|||+++.......         ....+.
T Consensus       147 ~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt  223 (345)
T 2v62_A          147 TFKKSTVLQLGIRMLDVLEYIHENE---YVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGT  223 (345)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCC
Confidence            7999999999999999999999999   99999999999998777  999999999976532211         122344


Q ss_pred             ceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHHH----------------------------------HHHHHHH
Q 044320           77 VSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYLK----------------------------------RFMSLAL  121 (176)
Q Consensus        77 ~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~----------------------------------~l~~l~~  121 (176)
                      ..+.+|+. .+..++.++||||||+++|+|+++..||..                                  .+.+++.
T Consensus       224 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  303 (345)
T 2v62_A          224 IEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLV  303 (345)
T ss_dssp             TTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHH
T ss_pred             ccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHHH
Confidence            44444443 366789999999999999999888877621                                  5788999


Q ss_pred             hhcccCCCCCCCHHHHHHHHHhhhhcC
Q 044320          122 KYCEDETKARPSMLEVARQLENISSML  148 (176)
Q Consensus       122 ~~~~~~p~~Rp~~~~i~~~l~~~~~~~  148 (176)
                      .||..+|.+||++.++++.|+......
T Consensus       304 ~~l~~dp~~Rps~~~l~~~L~~~~~~~  330 (345)
T 2v62_A          304 CAHSLAYDEKPNYQALKKILNPHGIPL  330 (345)
T ss_dssp             HHHTCCTTCCCCHHHHHHHHCTTCCCC
T ss_pred             HHhhcCcccCCCHHHHHHHHhccCCcc
Confidence            999999999999999999999766543

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.95  E-value=6.8e-29  Score=185.47  Aligned_cols=136  Identities=21%  Similarity=0.280  Sum_probs=110.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHh--------cCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC------C
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLH--------TEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI------N   71 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh--------~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~------~   71 (176)
                      ...+++.+++.++.|++.||+|||        +.+   ++||||||+||+++.++.+||+|||+++.......      .
T Consensus        99 ~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  175 (301)
T 3q4u_A           99 LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPA---IAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNN  175 (301)
T ss_dssp             TCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCE---EECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCC
T ss_pred             hcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCC---eecCCCChHhEEEcCCCCEEEeeCCCeeeccccccccccccc
Confidence            356999999999999999999999        888   99999999999999999999999999865432221      1


Q ss_pred             CccccceeeecCCCC-C------CCCcccchhhHhHHHHHHhcc----------ChHH----------------------
Q 044320           72 GVVGHVSIVVKGTHT-Q------QLTEKSDIYGLGIACLYMGLY----------SFEY----------------------  112 (176)
Q Consensus        72 ~~~~~~~~~~~~~~~-~------~~~~~~Dv~s~G~~l~~l~~~----------~~~~----------------------  112 (176)
                      ...+...+.+|+... .      .++.++||||||+++|+|.++          ..||                      
T Consensus       176 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~  255 (301)
T 3q4u_A          176 PRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQ  255 (301)
T ss_dssp             CCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCC
T ss_pred             ccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCC
Confidence            224555555555442 2      344689999999999999987          3333                      


Q ss_pred             -------------HHHHHHHHHhhcccCCCCCCCHHHHHHHHHhh
Q 044320          113 -------------LKRFMSLALKYCEDETKARPSMLEVARQLENI  144 (176)
Q Consensus       113 -------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~~~  144 (176)
                                   +..+.+++.+||..+|++|||+.++++.|+++
T Consensus       256 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          256 RPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             CCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence                         24588999999999999999999999999875

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.95  E-value=4.2e-29  Score=201.88  Aligned_cols=132  Identities=12%  Similarity=0.162  Sum_probs=112.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC--CCeEEeecCCcccCCCCCC-CCccccceeee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK--FTPKVFDFEISRLAPVPNI-NGVVGHVSIVV   81 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~--~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~   81 (176)
                      ....|++.++..|+.||+.||.|||+++   |+||||||+|||++.+  +.+||+|||+++....... ....|+++|.+
T Consensus       248 ~~~~l~e~~~~~~~~qi~~al~ylH~~~---iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~A  324 (573)
T 3uto_A          248 EHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAA  324 (573)
T ss_dssp             TTSCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEEEECSSGGGCC
T ss_pred             hCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCChhhccccCCCCCCEEEeeccceeEccCCCceeeeEECccccC
Confidence            3457999999999999999999999999   9999999999999754  8999999999987654432 23356666666


Q ss_pred             cCC-CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCCC
Q 044320           82 KGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        82 ~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      |+. .+..|+.++||||+||++|+|+++..||.                           ..+.+++.+||..||.+||+
T Consensus       325 PEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t  404 (573)
T 3uto_A          325 PEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMT  404 (573)
T ss_dssp             HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSCC
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcC
Confidence            654 47788999999999999999988887762                           24789999999999999999


Q ss_pred             HHHHHH
Q 044320          134 MLEVAR  139 (176)
Q Consensus       134 ~~~i~~  139 (176)
                      +.++++
T Consensus       405 ~~e~l~  410 (573)
T 3uto_A          405 IHQALE  410 (573)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            999876

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.95  E-value=8e-29  Score=187.30  Aligned_cols=136  Identities=32%  Similarity=0.499  Sum_probs=114.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcC---CCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCcccccee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTE---ADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSI   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~---~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~   79 (176)
                      ...+++.++..++.|++.||.|||++   +   ++||||||+||+++.++.++|+|||++........   ....+...+
T Consensus       125 ~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y  201 (326)
T 3uim_A          125 QPPLDWPKRQRIALGSARGLAYLHDHCDPK---IIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGH  201 (326)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHSSSSC---EECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCCCC---eEeCCCchhhEEECCCCCEEeccCccccccCcccccccccccCCcCc
Confidence            34599999999999999999999999   8   99999999999999999999999999986543322   122345555


Q ss_pred             eecCCC-CCCCCcccchhhHhHHHHHHhccChHH------------------------------------------HHHH
Q 044320           80 VVKGTH-TQQLTEKSDIYGLGIACLYMGLYSFEY------------------------------------------LKRF  116 (176)
Q Consensus        80 ~~~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------------------~~~l  116 (176)
                      .+|+.. ...++.++||||+|+++|++.++..||                                          +..+
T Consensus       202 ~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  281 (326)
T 3uim_A          202 IAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQL  281 (326)
T ss_dssp             CCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHH
T ss_pred             cCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHH
Confidence            555443 566889999999999999998887665                                          2568


Q ss_pred             HHHHHhhcccCCCCCCCHHHHHHHHHhh
Q 044320          117 MSLALKYCEDETKARPSMLEVARQLENI  144 (176)
Q Consensus       117 ~~l~~~~~~~~p~~Rp~~~~i~~~l~~~  144 (176)
                      .+++.+||..+|.+|||+.++++.|++.
T Consensus       282 ~~li~~cl~~dP~~Rps~~ell~~L~~~  309 (326)
T 3uim_A          282 IQVALLCTQSSPMERPKMSEVVRMLEGD  309 (326)
T ss_dssp             HHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred             HHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence            8999999999999999999999999864

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.95  E-value=3.1e-29  Score=187.19  Aligned_cols=141  Identities=16%  Similarity=0.280  Sum_probs=110.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Cccccc-ee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVGHV-SI   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~~-~~   79 (176)
                      +..+++.+++.++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||++.........     ...+.. +.
T Consensus       108 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~  184 (295)
T 3ugc_A          108 KERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWY  184 (295)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCSCC-------------CTTCGGGGC
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCcccee
Confidence            345999999999999999999999999   999999999999999999999999999875433211     112222 33


Q ss_pred             eecCCCCCCCCcccchhhHhHHHHHHhccChH----------------------------------------HHHHHHHH
Q 044320           80 VVKGTHTQQLTEKSDIYGLGIACLYMGLYSFE----------------------------------------YLKRFMSL  119 (176)
Q Consensus        80 ~~~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~----------------------------------------~~~~l~~l  119 (176)
                      +|+......++.++||||||+++|++.++..+                                        ++..+.++
T Consensus       185 aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  264 (295)
T 3ugc_A          185 APESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMI  264 (295)
T ss_dssp             CHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHH
T ss_pred             CcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHHHHHH
Confidence            33334467789999999999999999885322                                        12458899


Q ss_pred             HHhhcccCCCCCCCHHHHHHHHHhhhhcCC
Q 044320          120 ALKYCEDETKARPSMLEVARQLENISSMLP  149 (176)
Q Consensus       120 ~~~~~~~~p~~Rp~~~~i~~~l~~~~~~~~  149 (176)
                      +.+||..+|++||++.++++.|+.+...++
T Consensus       265 i~~~l~~dp~~Rps~~el~~~L~~l~~~l~  294 (295)
T 3ugc_A          265 MTECWNNNVNQRPSFRDLALRVDQIRDNMA  294 (295)
T ss_dssp             HHHHSCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred             HHHHcCCChhhCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999987653

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=5.2e-28  Score=183.31  Aligned_cols=139  Identities=22%  Similarity=0.254  Sum_probs=111.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcC--------CCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC------CC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTE--------ADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI------NG   72 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~--------~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~------~~   72 (176)
                      ..+++.+++.++.|++.||.|||++        +   ++||||||+||+++.++.+||+|||++........      ..
T Consensus       129 ~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  205 (337)
T 3mdy_A          129 TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPA---IAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNT  205 (337)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCC---EECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCS
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCC---EEecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCC
Confidence            4689999999999999999999998        8   99999999999999999999999999876543321      12


Q ss_pred             ccccceeeecCCC-CCCCCc------ccchhhHhHHHHHHhcc----------Ch-------------------------
Q 044320           73 VVGHVSIVVKGTH-TQQLTE------KSDIYGLGIACLYMGLY----------SF-------------------------  110 (176)
Q Consensus        73 ~~~~~~~~~~~~~-~~~~~~------~~Dv~s~G~~l~~l~~~----------~~-------------------------  110 (176)
                      ..+...+.+|+.. ......      ++||||||+++|||.++          ..                         
T Consensus       206 ~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  285 (337)
T 3mdy_A          206 RVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLR  285 (337)
T ss_dssp             SCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCC
T ss_pred             CccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccC
Confidence            2455555555543 333333      38999999999999887          22                         


Q ss_pred             ----------HHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHhhhhcC
Q 044320          111 ----------EYLKRFMSLALKYCEDETKARPSMLEVARQLENISSML  148 (176)
Q Consensus       111 ----------~~~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~~~~~~~  148 (176)
                                ..+..+.+++.+||..+|.+||++.++++.|+++....
T Consensus       286 ~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~  333 (337)
T 3mdy_A          286 PSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ  333 (337)
T ss_dssp             CCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             ccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence                      23445889999999999999999999999999988753

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.95  E-value=2e-28  Score=183.91  Aligned_cols=131  Identities=18%  Similarity=0.173  Sum_probs=109.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~~   84 (176)
                      ...+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.++|+|||+++....... ....+...+.+|+.
T Consensus       114 ~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~  190 (308)
T 3g33_A          114 PPGLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEV  190 (308)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCTTTEEECTTSCEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCEEEeeCccccccCCCcccCCccccccccCchH
Confidence            345999999999999999999999999   99999999999999999999999999976554332 22334555555544


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChHH--------------------------------------------------H
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------------------------------L  113 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------------------------------~  113 (176)
                       ....++.++||||+||++|+|.++..+|                                                  .
T Consensus       191 ~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (308)
T 3g33_A          191 LLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEME  270 (308)
T ss_dssp             HHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCC
T ss_pred             HcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCcccc
Confidence             3777899999999999999998887665                                                  1


Q ss_pred             HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      ..+.+++.+||..+|++|||+.++++
T Consensus       271 ~~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          271 ESGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHHhcCCCccCCCHHHHhc
Confidence            34678999999999999999999875

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.95  E-value=2.7e-29  Score=193.91  Aligned_cols=139  Identities=22%  Similarity=0.235  Sum_probs=112.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCc----cccc-eee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGV----VGHV-SIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~----~~~~-~~~   80 (176)
                      +..+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++..........    .+.. |.+
T Consensus       207 ~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~a  283 (377)
T 3cbl_A          207 GARLRVKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTA  283 (377)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---cCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCC
Confidence            346899999999999999999999999   99999999999999999999999999876543321111    1122 333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+......++.++||||||+++||+.+ +..||                        +..+.+++.+||..+|++||++.
T Consensus       284 PE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~  363 (377)
T 3cbl_A          284 PEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFS  363 (377)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHH
Confidence            333345678899999999999999987 55544                        23588999999999999999999


Q ss_pred             HHHHHHHhhhhc
Q 044320          136 EVARQLENISSM  147 (176)
Q Consensus       136 ~i~~~l~~~~~~  147 (176)
                      ++++.|+.+...
T Consensus       364 ~i~~~L~~i~~~  375 (377)
T 3cbl_A          364 TIYQELQSIRKR  375 (377)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999988764

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.95  E-value=3.7e-29  Score=189.58  Aligned_cols=139  Identities=18%  Similarity=0.292  Sum_probs=114.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccc-eee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHV-SIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~-~~~   80 (176)
                      +..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++........    ...+.. |.+
T Consensus       111 ~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~a  187 (327)
T 3poz_A          111 KDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMA  187 (327)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccC
Confidence            467999999999999999999999999   999999999999999999999999998765433211    112222 333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++||||||+++|++++ +..||.                        ..+.+++.+||..+|.+||++.
T Consensus       188 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  267 (327)
T 3poz_A          188 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFR  267 (327)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHH
T ss_pred             hHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCCCHH
Confidence            343446778999999999999999998 776653                        2488999999999999999999


Q ss_pred             HHHHHHHhhhhc
Q 044320          136 EVARQLENISSM  147 (176)
Q Consensus       136 ~i~~~l~~~~~~  147 (176)
                      ++++.|+.+...
T Consensus       268 ell~~l~~~~~~  279 (327)
T 3poz_A          268 ELIIEFSKMARD  279 (327)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhh
Confidence            999999987653

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.95  E-value=1.2e-28  Score=186.05  Aligned_cols=142  Identities=23%  Similarity=0.301  Sum_probs=109.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceee-ec
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIV-VK   82 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~-~~   82 (176)
                      .+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++........    ...+...+. ++
T Consensus       133 ~~~~~~~~~i~~qi~~al~~LH~~~---ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE  209 (323)
T 3qup_A          133 NLPLQTLVRFMVDIACGMEYLSSRN---FIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALE  209 (323)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCC---cccCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCch
Confidence            6999999999999999999999999   999999999999999999999999999765433211    112222233 33


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      ......++.++||||||+++|++++ +..||.                        ..+.+++.+||..+|++||++.++
T Consensus       210 ~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l  289 (323)
T 3qup_A          210 SLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCL  289 (323)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHH
T ss_pred             hhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHH
Confidence            3346678999999999999999988 666552                        468899999999999999999999


Q ss_pred             HHHHHhhhhcCCCCC
Q 044320          138 ARQLENISSMLPESD  152 (176)
Q Consensus       138 ~~~l~~~~~~~~~~~  152 (176)
                      ++.|+++........
T Consensus       290 ~~~l~~~l~~~~~~~  304 (323)
T 3qup_A          290 RMELENILGHLSVLS  304 (323)
T ss_dssp             HHHHHHHHHC-----
T ss_pred             HHHHHHHHHHhhhcC
Confidence            999999998764443

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=2.8e-28  Score=181.87  Aligned_cols=144  Identities=23%  Similarity=0.296  Sum_probs=117.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC------CCCccccce
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN------INGVVGHVS   78 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~------~~~~~~~~~   78 (176)
                      ....+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.++++|||++.......      .....+...
T Consensus       117 ~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~  193 (298)
T 3pls_A          117 PQRNPTVKDLISFGLQVARGMEYLAEQK---FVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVK  193 (298)
T ss_dssp             TTCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGG
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCcc
Confidence            3567899999999999999999999999   9999999999999999999999999997654322      111222333


Q ss_pred             eee-cCCCCCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           79 IVV-KGTHTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        79 ~~~-~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +.+ +......++.++||||+|+++|++.++..++                         +..+.+++.+||..+|.+||
T Consensus       194 y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp  273 (298)
T 3pls_A          194 WTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQPEYCPDSLYQVMQQCWEADPAVRP  273 (298)
T ss_dssp             GSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             ccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCCCCCccchHHHHHHHHHHccCChhhCc
Confidence            333 3334667899999999999999998844332                         34688999999999999999


Q ss_pred             CHHHHHHHHHhhhhcCCCC
Q 044320          133 SMLEVARQLENISSMLPES  151 (176)
Q Consensus       133 ~~~~i~~~l~~~~~~~~~~  151 (176)
                      ++.++++.|+++...+...
T Consensus       274 s~~~ll~~l~~~~~~l~~~  292 (298)
T 3pls_A          274 TFRVLVGEVEQIVSALLGD  292 (298)
T ss_dssp             CHHHHHHHHHHHHHHCCSC
T ss_pred             CHHHHHHHHHHHHHHHhcc
Confidence            9999999999999886544

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.95  E-value=1.7e-28  Score=184.51  Aligned_cols=142  Identities=22%  Similarity=0.312  Sum_probs=111.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Ccccccee-
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSI-   79 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~-   79 (176)
                      ....+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++.........    ...+...+ 
T Consensus       140 ~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~  216 (313)
T 3brb_A          140 GPKHIPLQTLLKFMVDIALGMEYLSNRN---FLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWI  216 (313)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCSGGGEEECTTSCEEECSCSCC----------------CCGGGS
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCcccc
Confidence            3467999999999999999999999999   999999999999999999999999998765433211    11222223 


Q ss_pred             eecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           80 VVKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        80 ~~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +|+......++.++||||||+++|+|.+ +..||                        +..+.+++.+||..+|.+||++
T Consensus       217 aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  296 (313)
T 3brb_A          217 AIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTF  296 (313)
T ss_dssp             CHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCH
T ss_pred             CchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhhCcCH
Confidence            3333346778999999999999999988 55443                        2468999999999999999999


Q ss_pred             HHHHHHHHhhhhcCC
Q 044320          135 LEVARQLENISSMLP  149 (176)
Q Consensus       135 ~~i~~~l~~~~~~~~  149 (176)
                      .++++.|+++...++
T Consensus       297 ~~l~~~L~~l~~~lp  311 (313)
T 3brb_A          297 SVLRLQLEKLLESLP  311 (313)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999988765

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.95  E-value=6.7e-29  Score=182.89  Aligned_cols=139  Identities=20%  Similarity=0.316  Sum_probs=114.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Cccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~~   82 (176)
                      +..+++.+++.++.|++.||.|||+.+   ++|+||||+||+++.++.++++|||++.........   ...+...+.+|
T Consensus        98 ~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP  174 (268)
T 3sxs_A           98 GKGLEPSQLLEMCYDVCEGMAFLESHQ---FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAP  174 (268)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCH
Confidence            345999999999999999999999999   999999999999999999999999998765543322   12222233333


Q ss_pred             CC-CCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 GT-HTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~~-~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +. ....++.++||||+|+++|++.+ +..||                        +..+.+++.+||..+|.+||++.+
T Consensus       175 E~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  254 (268)
T 3sxs_A          175 EVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQ  254 (268)
T ss_dssp             HHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             HHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCCCCCCCcChHHHHHHHHHHcCCChhhCcCHHH
Confidence            33 35567889999999999999998 77665                        235889999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 044320          137 VARQLENISSM  147 (176)
Q Consensus       137 i~~~l~~~~~~  147 (176)
                      +++.|+.+..+
T Consensus       255 ll~~L~~l~~~  265 (268)
T 3sxs_A          255 LLSSIEPLREK  265 (268)
T ss_dssp             HHHHHGGGCC-
T ss_pred             HHHHHHHhhhc
Confidence            99999988764

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.95  E-value=1.9e-28  Score=184.52  Aligned_cols=131  Identities=16%  Similarity=0.145  Sum_probs=109.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~~   84 (176)
                      +..+++.+++.++.|++.||.|||+.+   ++||||||+||+++.++.+||+|||++........ ....|...+.+|+.
T Consensus       151 ~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~  227 (311)
T 3p1a_A          151 GASLPEAQVWGYLRDTLLALAHLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPEL  227 (311)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECGGGCEEECCCTTCEECC------CCCCCGGGCCGGG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEECCCCCEEEccceeeeecccCCCCcccCCCccccCHhH
Confidence            456999999999999999999999999   99999999999999999999999999876654332 22345666666666


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChH----------------------HHHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFE----------------------YLKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~----------------------~~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      ....++.++||||||+++|++.++..+                      .+..+.+++.+||..+|++||++.++++
T Consensus       228 ~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          228 LQGSYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             GGTCCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHTTTCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             hcCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHhccCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence            666899999999999999999877332                      1246889999999999999999999875

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.95  E-value=1.2e-28  Score=193.22  Aligned_cols=103  Identities=20%  Similarity=0.127  Sum_probs=84.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCC--eEEeecCCcccCCCCCCCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFT--PKVFDFEISRLAPVPNINGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||+|||+++   ++||||||+||+++.++.  +||+|||++......... ..+...+.+|+
T Consensus       194 ~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~~~-~~gt~~y~aPE  269 (429)
T 3kvw_A          194 FQGFSLPLVRKFAHSILQCLDALHKNR---IIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYT-YIQSRFYRAPE  269 (429)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHHT---EECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCS-SCSCGGGCCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEccCCCcceEEeecccceecCCcccc-cCCCCCccChH
Confidence            356999999999999999999999999   999999999999999887  999999999765543332 23444444444


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEY  112 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~  112 (176)
                       ..+..++.++|||||||++|+|.++..+|
T Consensus       270 ~~~~~~~~~~~DiwSlG~il~elltG~~pf  299 (429)
T 3kvw_A          270 VILGARYGMPIDMWSLGCILAELLTGYPLL  299 (429)
T ss_dssp             HHHTBCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             HHhCCCCCchHHHHhHHHHHHHHHhCCCCC
Confidence             44777899999999999999998886654

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.95  E-value=1.3e-28  Score=188.50  Aligned_cols=130  Identities=16%  Similarity=0.191  Sum_probs=107.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-------------------------CCCeEEeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-------------------------KFTPKVFDFE   60 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-------------------------~~~~~l~dfg   60 (176)
                      ...+++.++..++.|++.||+|||+++   ++||||||+||+++.                         ++.++|+|||
T Consensus       131 ~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG  207 (360)
T 3llt_A          131 YNGFHIEDIKLYCIEILKALNYLRKMS---LTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFG  207 (360)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEecc
Confidence            346999999999999999999999999   999999999999975                         7889999999


Q ss_pred             CcccCCCCCCCCccccceeeecC-CCCCCCCcccchhhHhHHHHHHhccChHHH--------------------------
Q 044320           61 ISRLAPVPNINGVVGHVSIVVKG-THTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------  113 (176)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------  113 (176)
                      ++........ ...+...+.+|+ .....++.++||||+||++|+|.++..||.                          
T Consensus       208 ~a~~~~~~~~-~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~  286 (360)
T 3llt_A          208 CATFKSDYHG-SIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEA  286 (360)
T ss_dssp             TCEETTSCCC-SCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             CceecCCCCc-CccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhh
Confidence            9976554332 233444444444 446788999999999999999988876651                          


Q ss_pred             -------------------------------------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 -------------------------------------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 -------------------------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                                                 ..+.+++.+||+.||++|||+.++++
T Consensus       287 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~  355 (360)
T 3llt_A          287 TKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLK  355 (360)
T ss_dssp             TTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             hhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence                                                       34568999999999999999999875

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.95  E-value=1.1e-27  Score=180.80  Aligned_cols=138  Identities=36%  Similarity=0.495  Sum_probs=113.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~~   82 (176)
                      ..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++++|||+++.......    ....+...+.+|
T Consensus       134 ~~~~~~~~~~i~~~i~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aP  210 (321)
T 2qkw_B          134 MSMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDP  210 (321)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCH
T ss_pred             cccCHHHHHHHHHHHHHHHHHhcCCC---eecCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCccccCH
Confidence            45999999999999999999999999   99999999999999999999999999876433221    122234444444


Q ss_pred             CC-CCCCCCcccchhhHhHHHHHHhccChH----------------------------------------HHHHHHHHHH
Q 044320           83 GT-HTQQLTEKSDIYGLGIACLYMGLYSFE----------------------------------------YLKRFMSLAL  121 (176)
Q Consensus        83 ~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~----------------------------------------~~~~l~~l~~  121 (176)
                      +. ....++.++||||||+++|++.++..|                                        .+..+.+++.
T Consensus       211 E~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  290 (321)
T 2qkw_B          211 EYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAV  290 (321)
T ss_dssp             HHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHH
T ss_pred             HHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHH
Confidence            43 356789999999999999999876543                                        2446789999


Q ss_pred             hhcccCCCCCCCHHHHHHHHHhhhhc
Q 044320          122 KYCEDETKARPSMLEVARQLENISSM  147 (176)
Q Consensus       122 ~~~~~~p~~Rp~~~~i~~~l~~~~~~  147 (176)
                      +||..+|++||++.++++.|+.+...
T Consensus       291 ~~l~~dP~~Rps~~ell~~L~~~l~~  316 (321)
T 2qkw_B          291 KCLALSSEDRPSMGDVLWKLEYALRL  316 (321)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             HHcCCCcccCcCHHHHHHHHHHHhhc
Confidence            99999999999999999999988764

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.95  E-value=5.5e-28  Score=181.19  Aligned_cols=138  Identities=30%  Similarity=0.450  Sum_probs=114.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~   81 (176)
                      ...+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++++|||++.......    .....+...+.+
T Consensus       127 ~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~a  203 (307)
T 2nru_A          127 TPPLSWHMRCKIAQGAANGINFLHENH---HIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMA  203 (307)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCC---eecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCC
Confidence            456999999999999999999999999   9999999999999999999999999987654322    112334555666


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhccChHH--------------------------------------HHHHHHHHHhh
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------------------LKRFMSLALKY  123 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------------------~~~l~~l~~~~  123 (176)
                      |+.....++.++||||||+++|++.++..||                                      +..+.+++.+|
T Consensus       204 PE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c  283 (307)
T 2nru_A          204 PEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQC  283 (307)
T ss_dssp             HHHHTTEECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHH
T ss_pred             hHHhcCCCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence            6655566889999999999999997765443                                      24578899999


Q ss_pred             cccCCCCCCCHHHHHHHHHhhhh
Q 044320          124 CEDETKARPSMLEVARQLENISS  146 (176)
Q Consensus       124 ~~~~p~~Rp~~~~i~~~l~~~~~  146 (176)
                      |..+|.+||++.++++.|+++..
T Consensus       284 l~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          284 LHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             TCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             cCCCcccCcCHHHHHHHHHHHhc
Confidence            99999999999999999998754

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.95  E-value=2.5e-29  Score=198.33  Aligned_cols=139  Identities=18%  Similarity=0.333  Sum_probs=114.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccc-eeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHV-SIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~-~~~~~   82 (176)
                      ..+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++.......   ....+.. |.+|+
T Consensus       279 ~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE  355 (454)
T 1qcf_A          279 SKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPE  355 (454)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCHH
Confidence            46889999999999999999999999   99999999999999999999999999987543221   1112222 33344


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      ......++.++||||||+++|||.+ +..||                        +..+.+++.+||..+|++||++.++
T Consensus       356 ~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i  435 (454)
T 1qcf_A          356 AINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYI  435 (454)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             HhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence            3445778999999999999999998 66654                        2458899999999999999999999


Q ss_pred             HHHHHhhhhcC
Q 044320          138 ARQLENISSML  148 (176)
Q Consensus       138 ~~~l~~~~~~~  148 (176)
                      ++.|+.+....
T Consensus       436 ~~~L~~~~~~~  446 (454)
T 1qcf_A          436 QSVLDDFYTAT  446 (454)
T ss_dssp             HHHHHTSSSSS
T ss_pred             HHHHHHHHhcc
Confidence            99999887654

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.8e-28  Score=184.54  Aligned_cols=153  Identities=24%  Similarity=0.246  Sum_probs=116.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--------------   71 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--------------   71 (176)
                      ...+++.+++.++.|++.||.|||+++ ++++|+||||+||+++.++.++|+|||++.........              
T Consensus       130 ~~~~~~~~~~~i~~qi~~~l~~LH~~~-~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~  208 (337)
T 3ll6_A          130 RGPLSCDTVLKIFYQTCRAVQHMHRQK-PPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEI  208 (337)
T ss_dssp             TCSCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC----------------
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC-CCEEEccCCcccEEECCCCCEEEecCccceeccccCcccccccccccchhhc
Confidence            456999999999999999999999873 34999999999999999999999999999765432211              


Q ss_pred             CccccceeeecCC----CCCCCCcccchhhHhHHHHHHhccChHHHH---------------------HHHHHHHhhccc
Q 044320           72 GVVGHVSIVVKGT----HTQQLTEKSDIYGLGIACLYMGLYSFEYLK---------------------RFMSLALKYCED  126 (176)
Q Consensus        72 ~~~~~~~~~~~~~----~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~~---------------------~l~~l~~~~~~~  126 (176)
                      ...+...+.+|+.    ....++.++||||||+++|++.++..||..                     .+.+++.+||..
T Consensus       209 ~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  288 (337)
T 3ll6_A          209 TRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVNGKYSIPPHDTQYTVFHSLIRAMLQV  288 (337)
T ss_dssp             ---------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC------------CCCCTTCCSSGGGHHHHHHHSCS
T ss_pred             cccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHhhcCcccCCcccccchHHHHHHHHHccC
Confidence            1224444555554    356678899999999999999988877643                     377899999999


Q ss_pred             CCCCCCCHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 044320          127 ETKARPSMLEVARQLENISSMLPESDTIPTESD  159 (176)
Q Consensus       127 ~p~~Rp~~~~i~~~l~~~~~~~~~~~~~~~~~~  159 (176)
                      +|.+||++.++++.|+.+..........+....
T Consensus       289 ~p~~Rps~~e~l~~l~~~~~~~~~~~~~~~~~~  321 (337)
T 3ll6_A          289 NPEERLSIAEVVHQLQEIAAARNVNPKSPITEL  321 (337)
T ss_dssp             SGGGSCCHHHHHHHHHHHHHHTTCCTTSCCHHH
T ss_pred             ChhhCcCHHHHHHHHHHHHhccCCCCCccHHHH
Confidence            999999999999999999887655544444333

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.95  E-value=2.6e-28  Score=183.76  Aligned_cols=140  Identities=26%  Similarity=0.416  Sum_probs=107.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC-C
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG-T   84 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~-~   84 (176)
                      .+++.+++.++.|++.||+|||+++ ++++||||||+||+++.++.++|+|||+++......  .....+...+.+|+ .
T Consensus       133 ~~~~~~~~~i~~qi~~aL~~LH~~~-~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~  211 (309)
T 3p86_A          133 QLDERRRLSMAYDVAKGMNYLHNRN-PPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVL  211 (309)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHTSS-SCCCCTTCCGGGEEECTTCCEEECCCC-----------------CCTTSCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcCC-CCEECCCCChhhEEEeCCCcEEECCCCCCccccccccccccCCCCccccChhhh
Confidence            3899999999999999999999874 459999999999999999999999999987544332  11223444444444 3


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      ....++.++||||||+++|++.++..||.                         ..+.+++.+||..+|.+||++.++++
T Consensus       212 ~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~  291 (309)
T 3p86_A          212 RDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMD  291 (309)
T ss_dssp             TTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            46678899999999999999988877652                         35889999999999999999999999


Q ss_pred             HHHhhhhcC
Q 044320          140 QLENISSML  148 (176)
Q Consensus       140 ~l~~~~~~~  148 (176)
                      .|+.+....
T Consensus       292 ~L~~~~~~~  300 (309)
T 3p86_A          292 LLRPLIKSA  300 (309)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhC
Confidence            999988764

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.95  E-value=4.3e-28  Score=191.37  Aligned_cols=99  Identities=22%  Similarity=0.315  Sum_probs=81.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----------------   69 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----------------   69 (176)
                      ...+++.++..++.||+.||+|||+.+   |+||||||+|||++.++.+||+|||+++......                
T Consensus       150 ~~~l~~~~~~~~~~qi~~aL~~LH~~~---iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~  226 (458)
T 3rp9_A          150 PVYLTELHIKTLLYNLLVGVKYVHSAG---ILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMN  226 (458)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC---------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---cCCCCCChhhEEECCCCCEeecccccchhccCccccccccccCccccccc
Confidence            456999999999999999999999999   9999999999999999999999999998754221                


Q ss_pred             -------------CCCccccceeeecCC--CCCCCCcccchhhHhHHHHHHhc
Q 044320           70 -------------INGVVGHVSIVVKGT--HTQQLTEKSDIYGLGIACLYMGL  107 (176)
Q Consensus        70 -------------~~~~~~~~~~~~~~~--~~~~~~~~~Dv~s~G~~l~~l~~  107 (176)
                                   .....++.+|.+|+.  ....++.++||||+||++|||++
T Consensus       227 ~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          227 LVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             ------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             cccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence                         112234556666663  35679999999999999999986

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.95  E-value=1.1e-28  Score=187.02  Aligned_cols=139  Identities=18%  Similarity=0.284  Sum_probs=110.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceee-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIV-   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~-   80 (176)
                      +..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++........    ...+...+. 
T Consensus       111 ~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~a  187 (327)
T 3lzb_A          111 KDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMA  187 (327)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTC----------------CCCGGGSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhhCC---CcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccC
Confidence            457999999999999999999999999   999999999999999999999999999765433211    112222333 


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+......++.++||||+|+++|++++ +..||.                        ..+.+++.+||..+|.+||++.
T Consensus       188 PE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  267 (327)
T 3lzb_A          188 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMRKCWMIDADSRPKFR  267 (327)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            333446778999999999999999998 776653                        3588999999999999999999


Q ss_pred             HHHHHHHhhhhc
Q 044320          136 EVARQLENISSM  147 (176)
Q Consensus       136 ~i~~~l~~~~~~  147 (176)
                      ++++.|+++...
T Consensus       268 ell~~L~~~~~~  279 (327)
T 3lzb_A          268 ELIIEFSKMARD  279 (327)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhC
Confidence            999999988754

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.95  E-value=2.4e-28  Score=187.62  Aligned_cols=163  Identities=17%  Similarity=0.185  Sum_probs=119.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcC-CCCCeEecCCCCCCeEeC------CCCCeEEeecCCcccCCCCCCCCccccce
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTE-ADPPIIHWDIKATNTLLD------SKFTPKVFDFEISRLAPVPNINGVVGHVS   78 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~-~~~~~vH~dl~~~nil~~------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~   78 (176)
                      ...+++.++..++.|++.||.|||++ +   ++||||||+||+++      ..+.++|+|||++........ ...+...
T Consensus       125 ~~~~~~~~~~~i~~qi~~aL~~lH~~~~---ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~~-~~~~t~~  200 (373)
T 1q8y_A          125 HRGIPLIYVKQISKQLLLGLDYMHRRCG---IIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYT-NSIQTRE  200 (373)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCC-SCCSCGG
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHhcCC---EEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCCC-CCCCCcc
Confidence            45699999999999999999999998 9   99999999999994      345799999999977654332 2234444


Q ss_pred             eeecCC-CCCCCCcccchhhHhHHHHHHhccChHH---------------------------------------------
Q 044320           79 IVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------------  112 (176)
Q Consensus        79 ~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------------  112 (176)
                      +.+|+. .+..++.++||||||+++|+|+++..||                                             
T Consensus       201 y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  280 (373)
T 1q8y_A          201 YRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGL  280 (373)
T ss_dssp             GCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--C
T ss_pred             ccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcch
Confidence            544443 4667899999999999999998876544                                             


Q ss_pred             --------------------------HHHHHHHHHhhcccCCCCCCCHHHHHHH--HHhhhhcCCCCCCCCCCCCCCCCc
Q 044320          113 --------------------------LKRFMSLALKYCEDETKARPSMLEVARQ--LENISSMLPESDTIPTESDISASG  164 (176)
Q Consensus       113 --------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~--l~~~~~~~~~~~~~~~~~~~~~~~  164 (176)
                                                +..+.+++.+||..+|.+||++.++++.  +.....  ......+........+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~--~~~~~~~~~~~~~~~~  358 (373)
T 1q8y_A          281 LRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLG--MEEIRVPDRELYGSGS  358 (373)
T ss_dssp             BSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTT--CTTCCCTTSCTTCBST
T ss_pred             hcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhChhhhcccC--cccccCcchhcCCCcc
Confidence                                      2456789999999999999999999873  332222  2222233334444555


Q ss_pred             chhhhhhhhc
Q 044320          165 EILEYFLCIT  174 (176)
Q Consensus       165 ~~~~~~~~~~  174 (176)
                      +.+.+...++
T Consensus       359 ~~~~~~~~~~  368 (373)
T 1q8y_A          359 DIPGWFEEVR  368 (373)
T ss_dssp             TSTTSSSCCC
T ss_pred             cCchHHHHhh
Confidence            5555554443

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.95  E-value=2.1e-28  Score=180.39  Aligned_cols=139  Identities=23%  Similarity=0.346  Sum_probs=107.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC--------CCCeEEeecCCcccCCCCCCCCccccc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS--------KFTPKVFDFEISRLAPVPNINGVVGHV   77 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~--------~~~~~l~dfg~~~~~~~~~~~~~~~~~   77 (176)
                      +..+++.+++.++.|++.||.|||+++..+++|+||||+||+++.        ++.++++|||.+............+..
T Consensus        99 ~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  178 (271)
T 3dtc_A           99 GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAY  178 (271)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-------------CCG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccccccCCCCcc
Confidence            457999999999999999999999986445889999999999985        678999999999766544433344455


Q ss_pred             eeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCC
Q 044320           78 SIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        78 ~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                      .+.+|+. ....++.++||||+|+++|++.++..||.                         ..+.+++.+||..+|.+|
T Consensus       179 ~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  258 (271)
T 3dtc_A          179 AWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPHSR  258 (271)
T ss_dssp             GGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             ceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCCCCCCcccCHHHHHHHHHHhcCCcccC
Confidence            5555443 35668899999999999999988877653                         358899999999999999


Q ss_pred             CCHHHHHHHHHhh
Q 044320          132 PSMLEVARQLENI  144 (176)
Q Consensus       132 p~~~~i~~~l~~~  144 (176)
                      |++.++++.|+.+
T Consensus       259 ps~~e~l~~L~~l  271 (271)
T 3dtc_A          259 PSFTNILDQLTTI  271 (271)
T ss_dssp             CCHHHHHHHHHC-
T ss_pred             cCHHHHHHHHhcC
Confidence            9999999999853

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.95  E-value=6e-28  Score=191.69  Aligned_cols=140  Identities=17%  Similarity=0.234  Sum_probs=116.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe---CCCCCeEEeecCCcccCCCCCCC---------Cc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL---DSKFTPKVFDFEISRLAPVPNIN---------GV   73 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~---~~~~~~~l~dfg~~~~~~~~~~~---------~~   73 (176)
                      ...+++.+++.++.||+.||.|||+++   |+||||||+|||+   +.++.++|+|||+++........         ..
T Consensus        97 ~~~l~~~~~~~i~~qi~~aL~yLH~~g---IvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~  173 (483)
T 3sv0_A           97 SRKLSLKTVLMLADQMINRVEFVHSKS---FLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNL  173 (483)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcccccccccccccc
Confidence            567999999999999999999999999   9999999999999   57889999999999765433211         22


Q ss_pred             cccceeeecC-CCCCCCCcccchhhHhHHHHHHhccChHHH-------------------------------HHHHHHHH
Q 044320           74 VGHVSIVVKG-THTQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------------KRFMSLAL  121 (176)
Q Consensus        74 ~~~~~~~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------------~~l~~l~~  121 (176)
                      .+...+.+++ .....++.++|||||||++|+|+++..||.                               .++.+++.
T Consensus       174 ~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~  253 (483)
T 3sv0_A          174 TGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFH  253 (483)
T ss_dssp             CSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHH
T ss_pred             CCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHHH
Confidence            3444444444 346778999999999999999998877752                               35789999


Q ss_pred             hhcccCCCCCCCHHHHHHHHHhhhhcC
Q 044320          122 KYCEDETKARPSMLEVARQLENISSML  148 (176)
Q Consensus       122 ~~~~~~p~~Rp~~~~i~~~l~~~~~~~  148 (176)
                      .||..+|++||++.++++.|+.+....
T Consensus       254 ~cl~~dP~~RPs~~el~~~L~~l~~~~  280 (483)
T 3sv0_A          254 YCRSLRFDDKPDYSYLKRLFRDLFIRE  280 (483)
T ss_dssp             HHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHhcCChhhCcCHHHHHHHHHHHHHHc
Confidence            999999999999999999999886654

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.95  E-value=1.1e-28  Score=186.70  Aligned_cols=139  Identities=20%  Similarity=0.345  Sum_probs=113.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceee-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIV-   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~-   80 (176)
                      +..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++.......    ....+...+. 
T Consensus       109 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~a  185 (325)
T 3kex_A          109 RGALGPQLLLNWGVQIAKGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMA  185 (325)
T ss_dssp             GGGSCTTHHHHHHHHHHHHHHHHHHTT---CCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSC
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhCC---CCCCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccC
Confidence            357899999999999999999999999   99999999999999999999999999987643322    1122332333 


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHHHH------------------------HHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYLK------------------------RFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~~------------------------~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      ++......++.++||||||+++|++++ +..||..                        .+.+++.+||..+|.+||++.
T Consensus       186 PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~  265 (325)
T 3kex_A          186 LESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFK  265 (325)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTCBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHH
T ss_pred             hHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHcCCChhhCcCHH
Confidence            333345778999999999999999998 7777632                        367899999999999999999


Q ss_pred             HHHHHHHhhhhc
Q 044320          136 EVARQLENISSM  147 (176)
Q Consensus       136 ~i~~~l~~~~~~  147 (176)
                      ++++.|+++...
T Consensus       266 el~~~l~~~~~~  277 (325)
T 3kex_A          266 ELANEFTRMARD  277 (325)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhc
Confidence            999999988653

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.95  E-value=8.9e-29  Score=195.14  Aligned_cols=141  Identities=21%  Similarity=0.297  Sum_probs=111.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Cccccc-eeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHV-SIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~-~~~~   81 (176)
                      +..+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++........   ...+.. |.+|
T Consensus       274 ~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aP  350 (452)
T 1fmk_A          274 GKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP  350 (452)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcccccccCH
Confidence            356999999999999999999999999   999999999999999999999999999865433221   112222 3333


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++||||||+++||+.+ +..||                        +..+.+++.+||..+|++||++.+
T Consensus       351 E~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~  430 (452)
T 1fmk_A          351 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEY  430 (452)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHH
Confidence            33446778999999999999999988 65554                        235889999999999999999999


Q ss_pred             HHHHHHhhhhcCC
Q 044320          137 VARQLENISSMLP  149 (176)
Q Consensus       137 i~~~l~~~~~~~~  149 (176)
                      +++.|+.+....+
T Consensus       431 l~~~L~~~~~~~~  443 (452)
T 1fmk_A          431 LQAFLEDYFTSTE  443 (452)
T ss_dssp             HHHHHHTTTSCSC
T ss_pred             HHHHHHHHhccCC
Confidence            9999998876543

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=2e-28  Score=188.89  Aligned_cols=144  Identities=25%  Similarity=0.341  Sum_probs=109.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC------CCccccce
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI------NGVVGHVS   78 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~------~~~~~~~~   78 (176)
                      ....+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++.......      ....+...
T Consensus       185 ~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~  261 (373)
T 3c1x_A          185 ETHNPTVKDLIGFGLQVAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVK  261 (373)
T ss_dssp             TTCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC---------------------CCGG
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHCC---EecCccchheEEECCCCCEEEeeccccccccccccccccccCCCCCccc
Confidence            3456899999999999999999999999   99999999999999999999999999976543221      11222233


Q ss_pred             eeecC-CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           79 IVVKG-THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        79 ~~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +.+|+ .....++.++||||||+++|++++ +..+|                        +..+.+++.+||..+|++||
T Consensus       262 y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dp~~RP  341 (373)
T 3c1x_A          262 WMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRP  341 (373)
T ss_dssp             GSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             ccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCc
Confidence            33333 346778999999999999999988 44333                        34688999999999999999


Q ss_pred             CHHHHHHHHHhhhhcCCCC
Q 044320          133 SMLEVARQLENISSMLPES  151 (176)
Q Consensus       133 ~~~~i~~~l~~~~~~~~~~  151 (176)
                      ++.++++.|+.+...+...
T Consensus       342 s~~ell~~L~~i~~~~~~~  360 (373)
T 3c1x_A          342 SFSELVSRISAIFSTFIGE  360 (373)
T ss_dssp             CHHHHHHHHHHHHHTCCSC
T ss_pred             CHHHHHHHHHHHHHhcccc
Confidence            9999999999999876543

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.95  E-value=1.3e-28  Score=181.48  Aligned_cols=140  Identities=22%  Similarity=0.311  Sum_probs=114.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC---CCCccccceeee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN---INGVVGHVSIVV   81 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~   81 (176)
                      ....+++.+++.++.|++.||.|||+.+   ++|+||||+||+++.++.++++|||++.......   .....+...+.+
T Consensus        99 ~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~a  175 (269)
T 4hcu_A           99 QRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWAS  175 (269)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCC
T ss_pred             cCcccCHHHHHHHHHHHHHHHHHHHhCC---eecCCcchheEEEcCCCCEEeccccccccccccccccccCcccccccCC
Confidence            3456999999999999999999999999   9999999999999999999999999987654322   112222233444


Q ss_pred             cCC-CCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           82 KGT-HTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 ~~~-~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+. ....++.++|+||+|+++|++.+ +..||                        +..+.+++.+||..+|++||++.
T Consensus       176 PE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  255 (269)
T 4hcu_A          176 PEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFS  255 (269)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHccCCcccCcCHH
Confidence            433 35778999999999999999988 66664                        23578999999999999999999


Q ss_pred             HHHHHHHhhhhc
Q 044320          136 EVARQLENISSM  147 (176)
Q Consensus       136 ~i~~~l~~~~~~  147 (176)
                      ++++.|+++...
T Consensus       256 ~ll~~l~~l~~~  267 (269)
T 4hcu_A          256 RLLRQLAEIAES  267 (269)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHc
Confidence            999999988753

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.95  E-value=2.1e-28  Score=187.14  Aligned_cols=138  Identities=20%  Similarity=0.255  Sum_probs=114.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~~   82 (176)
                      ..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++........    ....+...+.+|
T Consensus       188 ~~l~~~~~~~~~~ql~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aP  264 (359)
T 3vhe_A          188 DFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP  264 (359)
T ss_dssp             TCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeECh
Confidence            34999999999999999999999999   99999999999999999999999999986543321    122233334444


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHHH-------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL-------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      + .....++.++||||||+++|+|++ +..||.                         ..+.+++.+||..+|.+||++.
T Consensus       265 E~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~  344 (359)
T 3vhe_A          265 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFS  344 (359)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHH
Confidence            4 346778999999999999999997 766552                         3588999999999999999999


Q ss_pred             HHHHHHHhhhhc
Q 044320          136 EVARQLENISSM  147 (176)
Q Consensus       136 ~i~~~l~~~~~~  147 (176)
                      ++++.|+.+...
T Consensus       345 ell~~L~~~~~~  356 (359)
T 3vhe_A          345 ELVEHLGNLLQA  356 (359)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988753

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.95  E-value=7.3e-28  Score=181.00  Aligned_cols=140  Identities=24%  Similarity=0.315  Sum_probs=110.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhc---CCCCCeEecCCCCCCeEeCCCCC-eEEeecCCcccCCCCCCCCccccceeeecC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHT---EADPPIIHWDIKATNTLLDSKFT-PKVFDFEISRLAPVPNINGVVGHVSIVVKG   83 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~---~~~~~~vH~dl~~~nil~~~~~~-~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~   83 (176)
                      .++..+++.++.|++.||.|||+   ++   ++||||||+||+++.++. +|++|||++........ ...+...+.+|+
T Consensus        98 ~~~~~~~~~~~~qi~~~l~~LH~~~~~~---ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~-~~~gt~~y~aPE  173 (307)
T 2eva_A           98 YYTAAHAMSWCLQCSQGVAYLHSMQPKA---LIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMT-NNKGSAAWMAPE  173 (307)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHTCSSSC---CCCCCCSGGGEEEETTTTEEEECCCCC-------------CCTTSSCHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhCCCCC---eecCCCChhHEEEeCCCCEEEEcccccccccccccc-cCCCCCceEChh
Confidence            47899999999999999999999   67   999999999999988876 79999999876543322 122334444443


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                       .....++.++||||||+++|++.++..||.                          ..+.+++.+||..+|.+||++.+
T Consensus       174 ~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e  253 (307)
T 2eva_A          174 VFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEE  253 (307)
T ss_dssp             HHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCCCcccccCHHHHHHHHHHhcCChhhCcCHHH
Confidence             346678999999999999999988877652                          35789999999999999999999


Q ss_pred             HHHHHHhhhhcCCCC
Q 044320          137 VARQLENISSMLPES  151 (176)
Q Consensus       137 i~~~l~~~~~~~~~~  151 (176)
                      +++.|+.+....+..
T Consensus       254 ll~~L~~~~~~~~~~  268 (307)
T 2eva_A          254 IVKIMTHLMRYFPGA  268 (307)
T ss_dssp             HHHHHHHHGGGCCCT
T ss_pred             HHHHHHHHHHhccCC
Confidence            999999998876543

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.95  E-value=4.8e-28  Score=191.54  Aligned_cols=131  Identities=21%  Similarity=0.184  Sum_probs=105.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecCC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKGT-   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~~-   84 (176)
                      ..+++.++..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++....... ....+..++.+|+. 
T Consensus       159 ~~l~~~~~~~~~~qil~aL~~lH~~~---iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~  235 (464)
T 3ttj_A          159 MELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVI  235 (464)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCCC-----CCCC----CCCTTCCHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChHhEEEeCCCCEEEEEEEeeeecCCCcccCCCcccccccCHHHH
Confidence            45899999999999999999999999   99999999999999999999999999987654322 22344555555444 


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH----------------------------------------------------
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------------------------  112 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------------------------  112 (176)
                      .+..++.++||||+||++|+|+++..+|                                                    
T Consensus       236 ~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (464)
T 3ttj_A          236 LGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPD  315 (464)
T ss_dssp             TTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCG
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcc
Confidence            4678899999999999999998776554                                                    


Q ss_pred             -------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 -------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 -------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                   ...+.+++.+||..||++|||+.++++.
T Consensus       316 ~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          316 SLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  356 (464)
T ss_dssp             GGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             cccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                         2357889999999999999999998764

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.95  E-value=3e-28  Score=182.88  Aligned_cols=141  Identities=20%  Similarity=0.222  Sum_probs=115.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~   81 (176)
                      ...+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++++|||++.........    ...+...+.+
T Consensus       139 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a  215 (313)
T 1t46_A          139 ELALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMA  215 (313)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCC
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeC
Confidence            346999999999999999999999999   999999999999999999999999998776544321    1122233444


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhc-cChHH-------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGL-YSFEY-------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      |+ .....++.++||||||+++|+|.+ +..||                         +..+.+++.+||..+|.+||++
T Consensus       216 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  295 (313)
T 1t46_A          216 PESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTF  295 (313)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             hHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHhccCCCCCCcccCCHHHHHHHHHHcCCCchhCcCH
Confidence            43 346678999999999999999987 65544                         2358899999999999999999


Q ss_pred             HHHHHHHHhhhhcCC
Q 044320          135 LEVARQLENISSMLP  149 (176)
Q Consensus       135 ~~i~~~l~~~~~~~~  149 (176)
                      .++++.|+++.....
T Consensus       296 ~ell~~L~~~~~~~~  310 (313)
T 1t46_A          296 KQIVQLIEKQISEST  310 (313)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999887644

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.95  E-value=5.5e-28  Score=179.05  Aligned_cols=142  Identities=18%  Similarity=0.240  Sum_probs=115.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKG   83 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~   83 (176)
                      ....+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++++|||++........ ....+...+.+|+
T Consensus       115 ~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE  191 (284)
T 2a19_B          115 RGEKLDKVLALELFEQITKGVDYIHSKK---LINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPE  191 (284)
T ss_dssp             GGSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEESSCCSCCCCCCSCCTTSCHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCCHHHEEEcCCCCEEECcchhheeccccccccccCCcccccChh
Confidence            3467999999999999999999999999   99999999999999999999999999876554321 2223444444444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-------------------HHHHHHHHhhcccCCCCCCCHHHHHHHHHh
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------KRFMSLALKYCEDETKARPSMLEVARQLEN  143 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~~  143 (176)
                      . ....++.++|+||||+++|+|.++..++.                   ..+.+++.+||..+|.+||++.++++.|..
T Consensus       192 ~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~  271 (284)
T 2a19_B          192 QISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTV  271 (284)
T ss_dssp             HHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHTTCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             hhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHHHHHHhhcccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence            3 46678999999999999999998776553                   246789999999999999999999999998


Q ss_pred             hhhcCC
Q 044320          144 ISSMLP  149 (176)
Q Consensus       144 ~~~~~~  149 (176)
                      +....+
T Consensus       272 ~~~~~~  277 (284)
T 2a19_B          272 WKKSPE  277 (284)
T ss_dssp             HTC---
T ss_pred             HhhCCC
Confidence            876643

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.95  E-value=2.4e-28  Score=182.01  Aligned_cols=139  Identities=23%  Similarity=0.349  Sum_probs=106.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~   80 (176)
                      ....+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++|+|||++.......    .....+...+.
T Consensus       113 ~~~~~~~~~~~~i~~qi~~~L~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~  189 (289)
T 3og7_A          113 SETKFEMKKLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWM  189 (289)
T ss_dssp             C---CCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEEEECCCC------------------CCCTTC
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhCC---cccccCccceEEECCCCCEEEccceeccccccccccccccccCCCcccc
Confidence            3567999999999999999999999999   9999999999999999999999999987544211    11223444444


Q ss_pred             ecCCC----CCCCCcccchhhHhHHHHHHhccChHHH-----------------------------HHHHHHHHhhcccC
Q 044320           81 VKGTH----TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------------KRFMSLALKYCEDE  127 (176)
Q Consensus        81 ~~~~~----~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------------~~l~~l~~~~~~~~  127 (176)
                      +|+..    ...++.++||||+|+++|++.++..||.                             ..+.+++.+||..+
T Consensus       190 aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~  269 (289)
T 3og7_A          190 APEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKK  269 (289)
T ss_dssp             CHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSS
T ss_pred             CchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhccccCCHHHHHHHHHHccCC
Confidence            44432    5567889999999999999988776652                             35889999999999


Q ss_pred             CCCCCCHHHHHHHHHhhhh
Q 044320          128 TKARPSMLEVARQLENISS  146 (176)
Q Consensus       128 p~~Rp~~~~i~~~l~~~~~  146 (176)
                      |.+||++.++++.|+++..
T Consensus       270 p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          270 RDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             GGGSCCHHHHHHHHHHTTC
T ss_pred             hhhCCCHHHHHHHHHHHhh
Confidence            9999999999999998754

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.95  E-value=2.4e-28  Score=188.43  Aligned_cols=140  Identities=20%  Similarity=0.282  Sum_probs=106.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Cccccc-e
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVGHV-S   78 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~~-~   78 (176)
                      .+..+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++........     ...+.. |
T Consensus       140 ~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y  216 (373)
T 2qol_A          140 HDAQFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRW  216 (373)
T ss_dssp             TTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC----------------------CTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCc
Confidence            3457999999999999999999999999   999999999999999999999999999765433211     111112 3


Q ss_pred             eeecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCC
Q 044320           79 IVVKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        79 ~~~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      .+|+......++.++||||||+++||+++ +..||                        +..+.+++.+||..+|.+||+
T Consensus       217 ~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs  296 (373)
T 2qol_A          217 TSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPK  296 (373)
T ss_dssp             SCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHHTTEECCCCTTCBHHHHHHHHHHTCSSGGGSCC
T ss_pred             cChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHhCcChhhCcC
Confidence            33333346778999999999999999886 66655                        245889999999999999999


Q ss_pred             HHHHHHHHHhhhhc
Q 044320          134 MLEVARQLENISSM  147 (176)
Q Consensus       134 ~~~i~~~l~~~~~~  147 (176)
                      +.++++.|+++...
T Consensus       297 ~~~i~~~L~~~~~~  310 (373)
T 2qol_A          297 FEQIVSILDKLIRN  310 (373)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999988764

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.95  E-value=4.6e-28  Score=180.94  Aligned_cols=142  Identities=26%  Similarity=0.355  Sum_probs=115.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC------CCccccce
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI------NGVVGHVS   78 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~------~~~~~~~~   78 (176)
                      ....+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++++|||++........      ....+...
T Consensus       121 ~~~~~~~~~~~~i~~ql~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~  197 (298)
T 3f66_A          121 ETHNPTVKDLIGFGLQVAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVK  197 (298)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGG
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEECCCCCEEECcccccccccccchhccccccCCCCCcc
Confidence            4567899999999999999999999999   99999999999999999999999999976543321      11222233


Q ss_pred             eeecC-CCCCCCCcccchhhHhHHHHHHhcc-ChHH------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           79 IVVKG-THTQQLTEKSDIYGLGIACLYMGLY-SFEY------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        79 ~~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~-~~~~------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +.+|+ .....++.++|+||+|+++|++.++ ..+|                        +..+.+++.+||..+|.+||
T Consensus       198 y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp  277 (298)
T 3f66_A          198 WMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRP  277 (298)
T ss_dssp             GSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             ccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhhCc
Confidence            33333 3466788999999999999999883 3322                        34689999999999999999


Q ss_pred             CHHHHHHHHHhhhhcCC
Q 044320          133 SMLEVARQLENISSMLP  149 (176)
Q Consensus       133 ~~~~i~~~l~~~~~~~~  149 (176)
                      ++.++++.|+.+.....
T Consensus       278 s~~ell~~L~~~~~~~~  294 (298)
T 3f66_A          278 SFSELVSRISAIFSTFI  294 (298)
T ss_dssp             CHHHHHHHHHHHHHTSC
T ss_pred             CHHHHHHHHHHHHHhhc
Confidence            99999999999988654

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.95  E-value=6.5e-28  Score=180.56  Aligned_cols=131  Identities=22%  Similarity=0.257  Sum_probs=109.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~~   84 (176)
                      ..+++.++..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++........  ....+...+.+|+.
T Consensus       111 ~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~  187 (297)
T 3fxz_A          111 TCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV  187 (297)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccChhh
Confidence            35899999999999999999999999   99999999999999999999999999876543322  22344555555444


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                       ....++.++||||+|+++|+|.++..||.                          ..+.+++.+||..+|++||++.++
T Consensus       188 ~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el  267 (297)
T 3fxz_A          188 VTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKEL  267 (297)
T ss_dssp             HHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             hcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHHHHHccCChhHCcCHHHH
Confidence             46778999999999999999998877752                          247899999999999999999998


Q ss_pred             HHH
Q 044320          138 ARQ  140 (176)
Q Consensus       138 ~~~  140 (176)
                      ++.
T Consensus       268 l~h  270 (297)
T 3fxz_A          268 LQH  270 (297)
T ss_dssp             TTC
T ss_pred             hhC
Confidence            763

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.95  E-value=9.1e-28  Score=178.45  Aligned_cols=138  Identities=23%  Similarity=0.384  Sum_probs=112.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCC-----eEEeecCCcccCCCCCCCCcccccee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFT-----PKVFDFEISRLAPVPNINGVVGHVSI   79 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~-----~~l~dfg~~~~~~~~~~~~~~~~~~~   79 (176)
                      ....+++.+++.++.|++.||+|||+++ ++++|+||||+||+++.++.     ++++|||+++....... ...+...+
T Consensus       115 ~~~~~~~~~~~~~~~~l~~~l~~lH~~~-~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~~~-~~~g~~~y  192 (287)
T 4f0f_A          115 KAHPIKWSVKLRLMLDIALGIEYMQNQN-PPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVS-GLLGNFQW  192 (287)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSSCEE-CCCCCCTT
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcceEEEeccCCCCceeEEeCCCCcccccccccc-ccCCCccc
Confidence            4557999999999999999999999874 45999999999999987776     99999999875443322 23344445


Q ss_pred             eecCCC---CCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCC
Q 044320           80 VVKGTH---TQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETK  129 (176)
Q Consensus        80 ~~~~~~---~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~  129 (176)
                      .+|+..   ...++.++||||+|+++|++.++..||.                           ..+.+++.+||..+|.
T Consensus       193 ~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~  272 (287)
T 4f0f_A          193 MAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPK  272 (287)
T ss_dssp             SCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             cCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhcCChh
Confidence            555543   4556889999999999999988877652                           2488999999999999


Q ss_pred             CCCCHHHHHHHHHhh
Q 044320          130 ARPSMLEVARQLENI  144 (176)
Q Consensus       130 ~Rp~~~~i~~~l~~~  144 (176)
                      +||++.++++.|+++
T Consensus       273 ~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          273 KRPHFSYIVKELSEL  287 (287)
T ss_dssp             GSCCHHHHHHHHHTC
T ss_pred             hCcCHHHHHHHHHhC
Confidence            999999999999864

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.95  E-value=6.7e-28  Score=183.64  Aligned_cols=130  Identities=16%  Similarity=0.178  Sum_probs=107.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe-------------------CCCCCeEEeecCCcccCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL-------------------DSKFTPKVFDFEISRLAP   66 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~-------------------~~~~~~~l~dfg~~~~~~   66 (176)
                      ...+++.+++.++.|++.||.|||+++   ++||||||+||++                   +.++.++|+|||+++...
T Consensus       117 ~~~~~~~~~~~i~~qi~~~L~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~  193 (355)
T 2eu9_A          117 FQPYPLPHVRHMAYQLCHALRFLHENQ---LTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDH  193 (355)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCcccccc
Confidence            357999999999999999999999999   9999999999999                   567899999999997655


Q ss_pred             CCCCCCccccceeeecC-CCCCCCCcccchhhHhHHHHHHhccChHH---------------------------------
Q 044320           67 VPNINGVVGHVSIVVKG-THTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------  112 (176)
Q Consensus        67 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------  112 (176)
                      .... ...+...+.+|+ .....++.++||||+|+++|+|.++..||                                 
T Consensus       194 ~~~~-~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  272 (355)
T 2eu9_A          194 EHHT-TIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYF  272 (355)
T ss_dssp             SCCC-SSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGE
T ss_pred             cccc-CCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhh
Confidence            4332 233444454444 34677899999999999999998876654                                 


Q ss_pred             ----------------------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ----------------------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ----------------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                                        ...+.+++.+||..+|.+|||+.++++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  333 (355)
T 2eu9_A          273 YKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALL  333 (355)
T ss_dssp             ETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             cccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                                              125679999999999999999999874

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=2.6e-28  Score=185.75  Aligned_cols=141  Identities=19%  Similarity=0.183  Sum_probs=111.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~~   82 (176)
                      ..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++.........    ...+...+.+|
T Consensus       167 ~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP  243 (344)
T 1rjb_A          167 NVLTFEDLLCFAYQVAKGMEFLEFKS---CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAP  243 (344)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHTT---EEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCH
Confidence            45899999999999999999999999   999999999999999999999999998765433221    11222334444


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHH-------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEY-------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      + .....++.++||||||+++|+|.+ +..||                         +..+.+++.+||..+|.+||++.
T Consensus       244 E~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  323 (344)
T 1rjb_A          244 ESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFP  323 (344)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHH
Confidence            4 346678999999999999999997 66554                         23588899999999999999999


Q ss_pred             HHHHHHHhhhhcCCC
Q 044320          136 EVARQLENISSMLPE  150 (176)
Q Consensus       136 ~i~~~l~~~~~~~~~  150 (176)
                      ++++.|+.+....+.
T Consensus       324 ~l~~~l~~~~~~~~~  338 (344)
T 1rjb_A          324 NLTSFLGCQLADAEE  338 (344)
T ss_dssp             HHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988776543

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.95  E-value=7.4e-28  Score=181.34  Aligned_cols=132  Identities=17%  Similarity=0.148  Sum_probs=108.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~   82 (176)
                      .+..+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||+++......  .....+...+.+|
T Consensus       112 ~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aP  188 (311)
T 3niz_A          112 NKTGLQDSQIKIYLYQLLRGVAHCHQHR---ILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAP  188 (311)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCCH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCchHhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCCH
Confidence            3456999999999999999999999999   9999999999999999999999999998754332  2223344555555


Q ss_pred             CCC--CCCCCcccchhhHhHHHHHHhccChHHH-----------------------------------------------
Q 044320           83 GTH--TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------------------------------  113 (176)
Q Consensus        83 ~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------------------------------  113 (176)
                      +..  ...++.++||||+|+++|++.++..||.                                               
T Consensus       189 E~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (311)
T 3niz_A          189 DVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSS  268 (311)
T ss_dssp             HHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHH
T ss_pred             HHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHH
Confidence            543  3568999999999999999988876541                                               


Q ss_pred             ------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 ------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                            .++.+++.+||..||++|||+.++++
T Consensus       269 ~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          269 IIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             HSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                  35678999999999999999999886

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.95  E-value=3.5e-28  Score=187.86  Aligned_cols=130  Identities=20%  Similarity=0.199  Sum_probs=107.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcC-CCCCeEecCCCCCCeEeCCCC--------------------------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTE-ADPPIIHWDIKATNTLLDSKF--------------------------------   52 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~-~~~~~vH~dl~~~nil~~~~~--------------------------------   52 (176)
                      ...+++.+++.++.|++.||.|||++ +   ++||||||+||+++.++                                
T Consensus       140 ~~~~~~~~~~~i~~qi~~aL~~lH~~~g---ivHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (397)
T 1wak_A          140 YQGLPLPCVKKIIQQVLQGLDYLHTKCR---IIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPAT  216 (397)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECCCCSGGGEEECCCHHHHHHHHHHHC---------------------
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcc
Confidence            35699999999999999999999998 8   99999999999998765                                


Q ss_pred             -----------------CeEEeecCCcccCCCCCCCCccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHH--
Q 044320           53 -----------------TPKVFDFEISRLAPVPNINGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY--  112 (176)
Q Consensus        53 -----------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--  112 (176)
                                       .++|+|||.+........ ...+...+.+|+. ....++.++|||||||++|+|+++..||  
T Consensus       217 ~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~-~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~  295 (397)
T 1wak_A          217 AGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFT-EDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEP  295 (397)
T ss_dssp             CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSC-SCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             cccccccccccccccccceEeccccccccccccCc-cCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCC
Confidence                             799999999976654322 2334455555444 4667899999999999999998886654  


Q ss_pred             ---------------------------------------------------------------------HHHHHHHHHhh
Q 044320          113 ---------------------------------------------------------------------LKRFMSLALKY  123 (176)
Q Consensus       113 ---------------------------------------------------------------------~~~l~~l~~~~  123 (176)
                                                                                           ...+.+++.+|
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  375 (397)
T 1wak_A          296 HSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPM  375 (397)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGG
T ss_pred             CcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHH
Confidence                                                                                 23467899999


Q ss_pred             cccCCCCCCCHHHHHH
Q 044320          124 CEDETKARPSMLEVAR  139 (176)
Q Consensus       124 ~~~~p~~Rp~~~~i~~  139 (176)
                      |..+|++|||+.++++
T Consensus       376 L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          376 LELIPEKRATAAECLR  391 (397)
T ss_dssp             GCSSGGGSCCHHHHHT
T ss_pred             hccChhhcCCHHHHhh
Confidence            9999999999999875

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.95  E-value=2.3e-28  Score=181.39  Aligned_cols=139  Identities=23%  Similarity=0.269  Sum_probs=105.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Cccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~~   82 (176)
                      +..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++++|||+++........   ...+...+.+|
T Consensus       110 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP  186 (281)
T 1mp8_A          110 KYSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAP  186 (281)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccccHHHEEECCCCCEEECccccccccCcccccccccCCCcccccCh
Confidence            456999999999999999999999999   999999999999999999999999998765443211   11222233333


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      + .....++.++||||+|+++|++++ +..||                        +..+.+++.+||..+|++||++.+
T Consensus       187 E~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  266 (281)
T 1mp8_A          187 ESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTE  266 (281)
T ss_dssp             HHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHH
Confidence            3 335678899999999999999986 65554                        235889999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 044320          137 VARQLENISSM  147 (176)
Q Consensus       137 i~~~l~~~~~~  147 (176)
                      +++.|+.+...
T Consensus       267 l~~~l~~~~~~  277 (281)
T 1mp8_A          267 LKAQLSTILEE  277 (281)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988653

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.95  E-value=9.9e-28  Score=181.53  Aligned_cols=131  Identities=18%  Similarity=0.206  Sum_probs=107.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-------------------CCCeEEeecCCcccCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-------------------KFTPKVFDFEISRLAP   66 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-------------------~~~~~l~dfg~~~~~~   66 (176)
                      ...+++.++..++.|++.||+|||+++   ++||||||+||+++.                   ++.++++|||++....
T Consensus       112 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~  188 (339)
T 1z57_A          112 FLPFRLDHIRKMAYQICKSVNFLHSNK---LTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDD  188 (339)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETT
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCc
Confidence            346899999999999999999999999   999999999999987                   6689999999997655


Q ss_pred             CCCCCCccccceeeecC-CCCCCCCcccchhhHhHHHHHHhccChHH---------------------------------
Q 044320           67 VPNINGVVGHVSIVVKG-THTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------  112 (176)
Q Consensus        67 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------  112 (176)
                      .... ...+...+.+|+ .....++.++||||+|+++|++.++..+|                                 
T Consensus       189 ~~~~-~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  267 (339)
T 1z57_A          189 EHHS-TLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYF  267 (339)
T ss_dssp             SCCC-SSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGE
T ss_pred             cccc-cccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhHH
Confidence            4332 233444444444 34667899999999999999998875544                                 


Q ss_pred             ----------------------------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 ----------------------------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 ----------------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                                        +..+.+++.+||..+|.+|||+.++++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  329 (339)
T 1z57_A          268 HHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKH  329 (339)
T ss_dssp             ETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             hhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcC
Confidence                                              2456799999999999999999998753

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.95  E-value=8e-29  Score=191.15  Aligned_cols=132  Identities=14%  Similarity=0.155  Sum_probs=107.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC-CC
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH-TQ   87 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~-~~   87 (176)
                      +++..++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++....... ...| ..+.+|+.. ..
T Consensus       203 l~~~~~~~i~~qi~~aL~~LH~~~---ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~-~~~g-~~y~aPE~~~~~  277 (377)
T 3byv_A          203 LVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARVV-SSVS-RGFEPPELEARR  277 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCGGGCEETTCEEE-CCCC-TTCCCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEEechhheecCCccc-CCCC-cCccChhhhccc
Confidence            456888899999999999999999   99999999999999999999999999986443222 2334 444444443 33


Q ss_pred             -----------CCCcccchhhHhHHHHHHhccChHHH-------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           88 -----------QLTEKSDIYGLGIACLYMGLYSFEYL-------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        88 -----------~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                                 .++.++|||||||++|+|.++..||.                   ..+.+++.+||..+|.+||++.++
T Consensus       278 ~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~  357 (377)
T 3byv_A          278 ATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGGSEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQA  357 (377)
T ss_dssp             TSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CCSGGGGSSCCCCCHHHHHHHHHHTCSSGGGCCCHHHH
T ss_pred             ccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccchhhhhhhccCCCHHHHHHHHHHcCCCchhCCCHHHH
Confidence                       68999999999999999999887764                   368899999999999999999999


Q ss_pred             HH--HHHhhh
Q 044320          138 AR--QLENIS  145 (176)
Q Consensus       138 ~~--~l~~~~  145 (176)
                      ++  .+..+.
T Consensus       358 l~hp~f~~~~  367 (377)
T 3byv_A          358 METPEYEQLR  367 (377)
T ss_dssp             HTSHHHHHHH
T ss_pred             hhChHHHHHH
Confidence            85  444443

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.95  E-value=2.3e-28  Score=180.99  Aligned_cols=141  Identities=21%  Similarity=0.309  Sum_probs=114.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---CccccceeeecC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHVSIVVKG   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~~~   83 (176)
                      ..+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++++|||.+.........   ...+...+.+|+
T Consensus       104 ~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE  180 (279)
T 1qpc_A          104 IKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPE  180 (279)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChh
Confidence            36999999999999999999999999   999999999999999999999999999776543321   112222233333


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      . ....++.++||||||+++|++.+ +..||                        +..+.+++.+||..+|++||++.++
T Consensus       181 ~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l  260 (279)
T 1qpc_A          181 AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYL  260 (279)
T ss_dssp             HHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             hhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcccCCCCcccccHHHHHHHHHHhccChhhCCCHHHH
Confidence            3 34667889999999999999998 66554                        2358899999999999999999999


Q ss_pred             HHHHHhhhhcCCC
Q 044320          138 ARQLENISSMLPE  150 (176)
Q Consensus       138 ~~~l~~~~~~~~~  150 (176)
                      ++.|+.+......
T Consensus       261 ~~~l~~~~~~~~~  273 (279)
T 1qpc_A          261 RSVLEDFFTATEG  273 (279)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHhccC
Confidence            9999998876543

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.95  E-value=2.2e-28  Score=183.69  Aligned_cols=138  Identities=20%  Similarity=0.299  Sum_probs=113.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~~   82 (176)
                      ..+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++|+|||++........    ....+...+.+|
T Consensus       145 ~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  221 (314)
T 2ivs_A          145 RALTMGDLISFAWQISQGMQYLAEMK---LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAI  221 (314)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCH
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHCC---CcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccCh
Confidence            45899999999999999999999999   99999999999999999999999999876543321    111222333333


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      + .....++.++||||+|+++|+|.+ +..||                        +..+.+++.+||..+|.+||++.+
T Consensus       222 E~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~  301 (314)
T 2ivs_A          222 ESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFAD  301 (314)
T ss_dssp             HHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHhhcCCcCCCCccCCHHHHHHHHHHccCChhhCcCHHH
Confidence            3 335667899999999999999998 65554                        245889999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 044320          137 VARQLENISSM  147 (176)
Q Consensus       137 i~~~l~~~~~~  147 (176)
                      +++.|+++...
T Consensus       302 l~~~l~~~~~~  312 (314)
T 2ivs_A          302 ISKDLEKMMVK  312 (314)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999988764

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.95  E-value=2.9e-28  Score=180.82  Aligned_cols=139  Identities=19%  Similarity=0.270  Sum_probs=114.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~   82 (176)
                      +..+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++++|||++........   ....+...+.+|
T Consensus       114 ~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP  190 (283)
T 3gen_A          114 RHRFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP  190 (283)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCccceEEEcCCCCEEEccccccccccccccccccCCccCcccCCH
Confidence            456999999999999999999999999   99999999999999999999999999876543221   112222334444


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      + .....++.++||||+|+++|++.+ +..||.                        ..+.+++.+||..+|.+||++.+
T Consensus       191 E~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  270 (283)
T 3gen_A          191 EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKI  270 (283)
T ss_dssp             HHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCCCCCCcCCHHHHHHHHHHccCChhHCcCHHH
Confidence            3 335678999999999999999997 766642                        35889999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 044320          137 VARQLENISSM  147 (176)
Q Consensus       137 i~~~l~~~~~~  147 (176)
                      +++.|..+...
T Consensus       271 ll~~L~~~~~~  281 (283)
T 3gen_A          271 LLSNILDVMDE  281 (283)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999988764

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.95  E-value=3.7e-28  Score=183.42  Aligned_cols=143  Identities=22%  Similarity=0.269  Sum_probs=115.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----CCccccceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----NGVVGHVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~~   81 (176)
                      ..+++.+++.++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||++........     ....+...+.+
T Consensus       129 ~~~~~~~~~~i~~~l~~~l~~LH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~a  205 (318)
T 3lxp_A          129 HSIGLAQLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYA  205 (318)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeC
Confidence            35899999999999999999999999   99999999999999999999999999987654321     11222233333


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhccChHH---------------------------------------HHHHHHHHH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------LKRFMSLAL  121 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------~~~l~~l~~  121 (176)
                      |+ .....++.++||||+|+++|+++++..+|                                       +..+.+++.
T Consensus       206 PE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  285 (318)
T 3lxp_A          206 PECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVYHLMK  285 (318)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHH
T ss_pred             hHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCCCCccccHHHHHHHH
Confidence            33 33556788999999999999999875543                                       135889999


Q ss_pred             hhcccCCCCCCCHHHHHHHHHhhhhcCCCCC
Q 044320          122 KYCEDETKARPSMLEVARQLENISSMLPESD  152 (176)
Q Consensus       122 ~~~~~~p~~Rp~~~~i~~~l~~~~~~~~~~~  152 (176)
                      +||..+|.+||++.++++.|+.+.+....+.
T Consensus       286 ~~l~~dP~~Rps~~ell~~L~~l~~~~~~~~  316 (318)
T 3lxp_A          286 NCWETEASFRPTFENLIPILKTVHEKYQGQA  316 (318)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHHHHC--
T ss_pred             HHcCCCcccCcCHHHHHHHHHHHHHhhccCC
Confidence            9999999999999999999999988765443

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.95  E-value=9.8e-28  Score=178.87  Aligned_cols=131  Identities=15%  Similarity=0.136  Sum_probs=107.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      +..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++.......  .....+...+.+|+
T Consensus        95 ~~~l~~~~~~~~~~ql~~~l~~lH~~~---ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE  171 (292)
T 3o0g_A           95 NGDLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPD  171 (292)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccceecCCccccccCCccccCCcChH
Confidence            567999999999999999999999999   9999999999999999999999999997654332  22233455555555


Q ss_pred             CC-CC-CCCcccchhhHhHHHHHHhccChHH-------------------------------------------------
Q 044320           84 TH-TQ-QLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------------  112 (176)
Q Consensus        84 ~~-~~-~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------------  112 (176)
                      .. +. .++.++||||+|+++|+|.++..|+                                                 
T Consensus       172 ~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
T 3o0g_A          172 VLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNV  251 (292)
T ss_dssp             HHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTT
T ss_pred             HHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhc
Confidence            43 33 3799999999999999998765542                                                 


Q ss_pred             ----HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ----LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ----~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                          ...+.+++.+|+..||++|||+.++++
T Consensus       252 ~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          252 VPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             STTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence                234678999999999999999999876

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.95  E-value=4.4e-28  Score=187.58  Aligned_cols=131  Identities=20%  Similarity=0.185  Sum_probs=108.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC------------------
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP------------------   68 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~------------------   68 (176)
                      ..+++..+..++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||+++.....                  
T Consensus       104 ~~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~  180 (388)
T 3oz6_A          104 NILEPVHKQYVVYQLIKVIKYLHSGG---LLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENF  180 (388)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHeEEcCCCCEEecCCccccccccccccccccccccccccccc
Confidence            46899999999999999999999999   999999999999999999999999999764321                  


Q ss_pred             -----CCCCccccceeeecCCC--CCCCCcccchhhHhHHHHHHhccChHH-----------------------------
Q 044320           69 -----NINGVVGHVSIVVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------------  112 (176)
Q Consensus        69 -----~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------------  112 (176)
                           ......++.++.+|+..  ...++.++||||+||++|+|+++..+|                             
T Consensus       181 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~  260 (388)
T 3oz6_A          181 DDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIGVIDFPSNEDVESIQS  260 (388)
T ss_dssp             ---------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHTSCC
T ss_pred             ccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhccC
Confidence                 01123455666666644  357899999999999999998887654                             


Q ss_pred             -----------------------------------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 -----------------------------------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 -----------------------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                                               ...+.+++.+||..+|++|||+.++++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~H  329 (388)
T 3oz6_A          261 PFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALKH  329 (388)
T ss_dssp             SSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             HHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhCC
Confidence                                                     2357789999999999999999999876

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.95  E-value=7.6e-28  Score=196.12  Aligned_cols=144  Identities=16%  Similarity=0.195  Sum_probs=116.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC-----ccc-cce
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING-----VVG-HVS   78 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~-----~~~-~~~   78 (176)
                      .+..+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++.........     ..+ ..|
T Consensus       429 ~~~~l~~~~~~~i~~qi~~~L~~LH~~~---iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y  505 (613)
T 2ozo_A          429 KREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKW  505 (613)
T ss_dssp             CTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTT
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHCC---EEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccce
Confidence            3566999999999999999999999999   9999999999999999999999999998764332111     111 123


Q ss_pred             eeecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCC
Q 044320           79 IVVKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        79 ~~~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      .+|+......++.++||||||+++|||++ +..||.                        ..+.+++.+||..+|++||+
T Consensus       506 ~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs  585 (613)
T 2ozo_A          506 YAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPD  585 (613)
T ss_dssp             SCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSTTTSCC
T ss_pred             eCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcC
Confidence            33443446788999999999999999987 666652                        46889999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCC
Q 044320          134 MLEVARQLENISSMLPES  151 (176)
Q Consensus       134 ~~~i~~~l~~~~~~~~~~  151 (176)
                      +.++++.|+.+.......
T Consensus       586 ~~~l~~~L~~~~~~~~~~  603 (613)
T 2ozo_A          586 FLTVEQRMRACYYSLASK  603 (613)
T ss_dssp             HHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            999999999987765443

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.95  E-value=2.4e-28  Score=185.68  Aligned_cols=140  Identities=21%  Similarity=0.252  Sum_probs=113.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~~   82 (176)
                      ..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++.......    ....+...+.+|
T Consensus       169 ~~l~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP  245 (343)
T 1luf_A          169 PPLSCAEQLCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPP  245 (343)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecCh
Confidence            67999999999999999999999999   99999999999999999999999999875432221    112223334444


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      + .....++.++|+||||+++|+|.+ +..||                        +..+.+++.+||..+|.+||++.+
T Consensus       246 E~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  325 (343)
T 1luf_A          246 ESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCS  325 (343)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCChHHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCcccCCCHHH
Confidence            3 335678999999999999999998 66554                        235889999999999999999999


Q ss_pred             HHHHHHhhhhcCC
Q 044320          137 VARQLENISSMLP  149 (176)
Q Consensus       137 i~~~l~~~~~~~~  149 (176)
                      +++.|+++.....
T Consensus       326 ~~~~L~~~~~~~~  338 (343)
T 1luf_A          326 IHRILQRMCERAE  338 (343)
T ss_dssp             HHHHHHHTTC---
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999887654

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.95  E-value=1.9e-28  Score=195.19  Aligned_cols=139  Identities=22%  Similarity=0.285  Sum_probs=113.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC---ccccc-eee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING---VVGHV-SIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~---~~~~~-~~~   80 (176)
                      .+..+++..++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++.........   ..+.. |.+
T Consensus       311 ~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~a  387 (495)
T 1opk_A          311 NRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA  387 (495)
T ss_dssp             CTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCC
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCCcCCcceeC
Confidence            3456999999999999999999999999   9999999999999999999999999998765432211   12222 333


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+......++.++||||||+++|||.+ +..||                        +..+.+++.+||..+|.+||++.
T Consensus       388 PE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~  467 (495)
T 1opk_A          388 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFA  467 (495)
T ss_dssp             HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHH
Confidence            333345678899999999999999987 55443                        24688999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 044320          136 EVARQLENISS  146 (176)
Q Consensus       136 ~i~~~l~~~~~  146 (176)
                      ++++.|+.+..
T Consensus       468 el~~~L~~~~~  478 (495)
T 1opk_A          468 EIHQAFETMFQ  478 (495)
T ss_dssp             HHHHHHHTSCS
T ss_pred             HHHHHHHHHHh
Confidence            99999997653

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.95  E-value=1.6e-28  Score=191.77  Aligned_cols=127  Identities=17%  Similarity=0.184  Sum_probs=103.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecC-C
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKG-T   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~-~   84 (176)
                      +..+++..++.++.|++.||+|||+++   |+||||||+||+++.++.+||+|||+++...... ....| ..+.+|+ .
T Consensus       205 ~~~l~~~~~~~i~~qi~~aL~~LH~~~---iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~~-~~~~g-~~y~aPE~~  279 (413)
T 3dzo_A          205 HKSLVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASA-VSPIG-RGFAPPETT  279 (413)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCGGGCEETTEEE-CCCCC-TTTCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcccceEEEecCCeEEEEeccceeecCCcc-ccCCC-CceeCchhh
Confidence            445788899999999999999999999   9999999999999999999999999987655442 22233 4444433 3


Q ss_pred             ----------CCCCCCcccchhhHhHHHHHHhccChHH-------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           85 ----------HTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        85 ----------~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                                ....++.++|||||||++|+|+++..||                   +..+.+++.+||..+|++||++.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~  359 (413)
T 3dzo_A          280 AERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGGSEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPL  359 (413)
T ss_dssp             HHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSCSGGGGSSCCCCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhhHHHHHhhcccCCHHHHHHHHHHccCChhhCcCHH
Confidence                      3345778999999999999998877665                   34689999999999999999966


Q ss_pred             HH
Q 044320          136 EV  137 (176)
Q Consensus       136 ~i  137 (176)
                      ++
T Consensus       360 ~~  361 (413)
T 3dzo_A          360 QA  361 (413)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.95  E-value=5.4e-28  Score=179.02  Aligned_cols=137  Identities=22%  Similarity=0.307  Sum_probs=106.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCCCC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHTQ   87 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (176)
                      .+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++++|||++...............+.+|+.....
T Consensus       113 ~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~  189 (278)
T 1byg_A          113 VLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREK  189 (278)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCCcceEEEeCCCcEEEeeccccccccccccCCCccccccCHHHhCCC
Confidence            3789999999999999999999999   9999999999999999999999999987654332222111123333333356


Q ss_pred             CCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHHHHHH
Q 044320           88 QLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVARQLE  142 (176)
Q Consensus        88 ~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~  142 (176)
                      .++.++|+||+|+++|++.+ +..||                        +..+.+++.+||..+|.+||++.++++.|+
T Consensus       190 ~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~  269 (278)
T 1byg_A          190 KFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLE  269 (278)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHH
Confidence            78899999999999999987 65554                        245889999999999999999999999999


Q ss_pred             hhhhc
Q 044320          143 NISSM  147 (176)
Q Consensus       143 ~~~~~  147 (176)
                      .+...
T Consensus       270 ~i~~~  274 (278)
T 1byg_A          270 HIKTH  274 (278)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88764

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.95  E-value=4e-28  Score=180.00  Aligned_cols=138  Identities=17%  Similarity=0.233  Sum_probs=112.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~   82 (176)
                      +..+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++++|||++........   ....+...+.+|
T Consensus       107 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP  183 (281)
T 3cc6_A          107 KNSLKVLTLVLYSLQICKAMAYLESIN---CVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSP  183 (281)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCH
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCccceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCc
Confidence            456999999999999999999999999   99999999999999999999999999876544321   112222333333


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      + .....++.++|+||||+++|++.+ +..||.                        ..+.+++.+||..+|.+||++.+
T Consensus       184 E~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~e  263 (281)
T 3cc6_A          184 ESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTE  263 (281)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCCchhCcCHHH
Confidence            3 335678899999999999999997 776652                        35889999999999999999999


Q ss_pred             HHHHHHhhhh
Q 044320          137 VARQLENISS  146 (176)
Q Consensus       137 i~~~l~~~~~  146 (176)
                      +++.|+.+..
T Consensus       264 ll~~L~~~~~  273 (281)
T 3cc6_A          264 LVCSLSDVYQ  273 (281)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998765

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.95  E-value=6.8e-28  Score=187.45  Aligned_cols=132  Identities=19%  Similarity=0.225  Sum_probs=105.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCCeEEeecCCcccCCCCC-CCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS---KFTPKVFDFEISRLAPVPN-INGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~---~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~   81 (176)
                      ...+++.++..++.|++.||.|||+.+   ++||||||+||+++.   ++.+||+|||+++...... .....+...+.+
T Consensus       155 ~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~a  231 (400)
T 1nxk_A          155 DQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVA  231 (400)
T ss_dssp             --CCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-----------CTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCcceEEEecCCCCccEEEEecccccccCCCCccccCCCCCCccC
Confidence            456999999999999999999999999   999999999999987   7889999999998655332 222334454555


Q ss_pred             cCC-CCCCCCcccchhhHhHHHHHHhccChHH-------------------------------HHHHHHHHHhhcccCCC
Q 044320           82 KGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------LKRFMSLALKYCEDETK  129 (176)
Q Consensus        82 ~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------~~~l~~l~~~~~~~~p~  129 (176)
                      |+. ....++.++|||||||++|+|+++..+|                               +..+.+++.+||..+|.
T Consensus       232 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  311 (400)
T 1nxk_A          232 PEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPT  311 (400)
T ss_dssp             GGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGG
T ss_pred             HhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChh
Confidence            544 4678899999999999999998876554                               23588999999999999


Q ss_pred             CCCCHHHHHHH
Q 044320          130 ARPSMLEVARQ  140 (176)
Q Consensus       130 ~Rp~~~~i~~~  140 (176)
                      +||++.++++.
T Consensus       312 ~Rpt~~eil~h  322 (400)
T 1nxk_A          312 QRMTITEFMNH  322 (400)
T ss_dssp             GSCCHHHHHHS
T ss_pred             HCcCHHHHhcC
Confidence            99999999875

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.94  E-value=2.1e-27  Score=177.50  Aligned_cols=131  Identities=20%  Similarity=0.298  Sum_probs=108.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++.......  .....+...+.+|+
T Consensus       131 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  207 (298)
T 2zv2_A          131 LKPLSEDQARFYFQDLIKGIEYLHYQK---IIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPE  207 (298)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChh
Confidence            457999999999999999999999999   9999999999999999999999999997655432  12334555666666


Q ss_pred             CCCC-C---CCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           84 THTQ-Q---LTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        84 ~~~~-~---~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      .... .   ++.++||||+|+++|+|.++..||                         +..+.+++.+||..+|++||++
T Consensus       208 ~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~  287 (298)
T 2zv2_A          208 SLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVV  287 (298)
T ss_dssp             GCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCH
T ss_pred             hhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHHHHHHHHhcccCCCCCccccCHHHHHHHHHHhhcChhhCCCH
Confidence            5432 2   367899999999999998887664                         2458899999999999999999


Q ss_pred             HHHHH
Q 044320          135 LEVAR  139 (176)
Q Consensus       135 ~~i~~  139 (176)
                      .++++
T Consensus       288 ~e~l~  292 (298)
T 2zv2_A          288 PEIKL  292 (298)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            99865

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.94  E-value=2.2e-28  Score=185.18  Aligned_cols=143  Identities=18%  Similarity=0.245  Sum_probs=111.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----CCccccceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----NGVVGHVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~~   81 (176)
                      ..+++.+++.++.|++.||+|||+.+   ++|+||||+||+++.++.++|+|||++........     ....+...+.+
T Consensus       122 ~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  198 (327)
T 3lxl_A          122 ARLDASRLLLYSSQICKGMEYLGSRR---CVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYA  198 (327)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccC
Confidence            45999999999999999999999999   99999999999999999999999999986543321     11122333333


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhccChHH---------------------------------------HHHHHHHHH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------LKRFMSLAL  121 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------~~~l~~l~~  121 (176)
                      |+ .....++.++||||+|+++|+++++..+|                                       +..+.+++.
T Consensus       199 PE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  278 (327)
T 3lxl_A          199 PESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPPACPAEVHELMK  278 (327)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCCTTCCHHHHHHHH
T ss_pred             HHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccCCCCCCcccHHHHHHHH
Confidence            33 33556788999999999999998875543                                       235889999


Q ss_pred             hhcccCCCCCCCHHHHHHHHHhhhhcCCCCC
Q 044320          122 KYCEDETKARPSMLEVARQLENISSMLPESD  152 (176)
Q Consensus       122 ~~~~~~p~~Rp~~~~i~~~l~~~~~~~~~~~  152 (176)
                      +||..+|.+||++.++++.|+.+........
T Consensus       279 ~~l~~dP~~Rps~~ell~~L~~~~~~~~~~~  309 (327)
T 3lxl_A          279 LCWAPSPQDRPSFSALGPQLDMLWSGSRGCE  309 (327)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHC--------
T ss_pred             HHcCCChhhCcCHHHHHHHHHHHHhhhcCcc
Confidence            9999999999999999999999887664443

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.94  E-value=2.8e-27  Score=178.53  Aligned_cols=136  Identities=14%  Similarity=0.153  Sum_probs=111.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe----CCCCCeEEeecCCcccCCCCCC-CCccccceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL----DSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~----~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~   81 (176)
                      ..+++.+++.++.|++.||.|||+++   ++||||||+||++    +.++.+||+|||+++....... ....+...+.+
T Consensus       107 ~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~a  183 (319)
T 4euu_A          107 YGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLH  183 (319)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCBCCCCSCGGGCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCceeecccCCCccC
Confidence            34999999999999999999999999   9999999999998    7778899999999987654332 22334555555


Q ss_pred             cCCC---------CCCCCcccchhhHhHHHHHHhccChHH----------------------------------------
Q 044320           82 KGTH---------TQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------------  112 (176)
Q Consensus        82 ~~~~---------~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------------  112 (176)
                      |+..         ...++.++|||||||++|+|.++..||                                        
T Consensus       184 PE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  263 (319)
T 4euu_A          184 PDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSG  263 (319)
T ss_dssp             HHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEES
T ss_pred             HHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCc
Confidence            5432         467889999999999999998876654                                        


Q ss_pred             ------------HHHHHHHHHhhcccCCCCCCCHHHHHHHHHhhh
Q 044320          113 ------------LKRFMSLALKYCEDETKARPSMLEVARQLENIS  145 (176)
Q Consensus       113 ------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~~~~  145 (176)
                                  ...+.+++.+||..||++||++.++++......
T Consensus       264 ~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~  308 (319)
T 4euu_A          264 DMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL  308 (319)
T ss_dssp             SCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHT
T ss_pred             cCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHh
Confidence                        235788999999999999999999999887543

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.94  E-value=8.5e-28  Score=182.46  Aligned_cols=132  Identities=17%  Similarity=0.251  Sum_probs=110.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~~   84 (176)
                      ...+++.++..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||++....... .....|..++.+|+.
T Consensus       108 ~~~l~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~  184 (328)
T 3fe3_A          108 HGRMKEKEARSKFRQIVSAVQYCHQKR---IVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPEL  184 (328)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCGGGTTSSSGGGCCHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCCHHHEEEcCCCCEEEeeccCceecCCCCccccccCCcceeCccc
Confidence            356999999999999999999999999   9999999999999999999999999997654332 223345556665554


Q ss_pred             C-CCCC-CcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           85 H-TQQL-TEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        85 ~-~~~~-~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      . +..+ +.++||||+||++|+|.++..||                       +..+.+++.+||..+|.+|||+.++++
T Consensus       185 ~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~  264 (328)
T 3fe3_A          185 FQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMK  264 (328)
T ss_dssp             HHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred             ccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            4 4444 47899999999999999888776                       245789999999999999999999986


Q ss_pred             H
Q 044320          140 Q  140 (176)
Q Consensus       140 ~  140 (176)
                      .
T Consensus       265 h  265 (328)
T 3fe3_A          265 D  265 (328)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.94  E-value=7.6e-28  Score=182.75  Aligned_cols=141  Identities=18%  Similarity=0.246  Sum_probs=114.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~~   82 (176)
                      ..+++.+++.++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||++........    ....+...+.+|
T Consensus       152 ~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  228 (334)
T 2pvf_A          152 EQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAP  228 (334)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeCh
Confidence            45999999999999999999999999   99999999999999999999999999876544321    111222333333


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      + .....++.++||||||+++|++.+ +..||.                        ..+.+++.+||..+|.+||++.+
T Consensus       229 E~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e  308 (334)
T 2pvf_A          229 EALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQ  308 (334)
T ss_dssp             HHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHH
Confidence            3 335667899999999999999988 655542                        35889999999999999999999


Q ss_pred             HHHHHHhhhhcCCC
Q 044320          137 VARQLENISSMLPE  150 (176)
Q Consensus       137 i~~~l~~~~~~~~~  150 (176)
                      +++.|+++......
T Consensus       309 ll~~L~~l~~~~~~  322 (334)
T 2pvf_A          309 LVEDLDRILTLTTN  322 (334)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhcccc
Confidence            99999999876544

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.94  E-value=2.5e-28  Score=187.92  Aligned_cols=121  Identities=12%  Similarity=0.069  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC-C--CCCCc
Q 044320           15 LHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH-T--QQLTE   91 (176)
Q Consensus        15 ~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~   91 (176)
                      +.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++...........+ ..+.+|+.. .  ..++.
T Consensus       197 ~~i~~qi~~aL~~LH~~~---ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t-~~y~aPE~~~~~~~~~~~  272 (371)
T 3q60_A          197 HILTAQLIRLAANLQSKG---LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVP-VTYAPREFLNASTATFTH  272 (371)
T ss_dssp             HHHHHHHHHHHHHHHHTT---EEETTCSGGGEEECTTSCEEECCGGGEEETTCEEEGGGSC-GGGCCHHHHTCSEEECCH
T ss_pred             HHHHHHHHHHHHHHHHCC---CccCcCCHHHEEECCCCCEEEEecceeeecCCCccCccCC-cCCcChhhccCCCCCcCc
Confidence            677799999999999999   9999999999999999999999999998765443222223 444444443 3  57899


Q ss_pred             ccchhhHhHHHHHHhccChHH--------------------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           92 KSDIYGLGIACLYMGLYSFEY--------------------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        92 ~~Dv~s~G~~l~~l~~~~~~~--------------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      ++|||||||++|+|+++..||                                +..+.+++.+||..+|++||++.++++
T Consensus       273 ~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          273 ALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred             cccHHHHHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            999999999999998877665                                346899999999999999999999864

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.94  E-value=5.5e-28  Score=180.73  Aligned_cols=138  Identities=19%  Similarity=0.255  Sum_probs=112.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----CCcccccee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----NGVVGHVSI   79 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~   79 (176)
                      ....+++.+++.++.|++.||+|||+++   ++|+||||+||+++.++.++|+|||++........     ....+...+
T Consensus       119 ~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y  195 (302)
T 4e5w_A          119 NKNKINLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFW  195 (302)
T ss_dssp             HTTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGG
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHhhcCC---cccCCCchheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccc
Confidence            3456999999999999999999999999   99999999999999999999999999977654321     112233333


Q ss_pred             eecC-CCCCCCCcccchhhHhHHHHHHhccChHH---------------------------------------HHHHHHH
Q 044320           80 VVKG-THTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------LKRFMSL  119 (176)
Q Consensus        80 ~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------~~~l~~l  119 (176)
                      .+|+ .....++.++|+||+|+++|++.++..++                                       +..+.++
T Consensus       196 ~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  275 (302)
T 4e5w_A          196 YAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQL  275 (302)
T ss_dssp             CCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCCHHHHHH
T ss_pred             cCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCCCCCCCCHHHHHH
Confidence            3333 33566788999999999999998865432                                       2358899


Q ss_pred             HHhhcccCCCCCCCHHHHHHHHHhhh
Q 044320          120 ALKYCEDETKARPSMLEVARQLENIS  145 (176)
Q Consensus       120 ~~~~~~~~p~~Rp~~~~i~~~l~~~~  145 (176)
                      +.+||..+|.+||++.++++.|+.+.
T Consensus       276 i~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          276 MRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             HHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999999999875

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.94  E-value=2.6e-27  Score=178.24  Aligned_cols=145  Identities=21%  Similarity=0.246  Sum_probs=116.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----------Cc
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----------GV   73 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----------~~   73 (176)
                      .+..+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++++|||.+.........           ..
T Consensus       127 ~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~  203 (317)
T 2buj_A          127 KGNFLTEDQILWLLLGICRGLEAIHAKG---YAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQ  203 (317)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEcCCCCEEEEecCcchhcccccccccccccccccccc
Confidence            3567999999999999999999999999   999999999999999999999999988654321110           11


Q ss_pred             cccceeeecCCCC-C---CCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhh
Q 044320           74 VGHVSIVVKGTHT-Q---QLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKY  123 (176)
Q Consensus        74 ~~~~~~~~~~~~~-~---~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~  123 (176)
                      .+...+.+|+... .   .++.++||||||+++|++.++..||.                          ..+.+++.+|
T Consensus       204 ~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  283 (317)
T 2buj_A          204 RCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSM  283 (317)
T ss_dssp             HSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC--CCCCTTSCHHHHHHHHHH
T ss_pred             cCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccCCCCccccCCHHHHHHHHHH
Confidence            2234455555432 2   25889999999999999998877653                          2588999999


Q ss_pred             cccCCCCCCCHHHHHHHHHhhhhcCCCCC
Q 044320          124 CEDETKARPSMLEVARQLENISSMLPESD  152 (176)
Q Consensus       124 ~~~~p~~Rp~~~~i~~~l~~~~~~~~~~~  152 (176)
                      |..+|.+||++.++++.|+.+....+.+.
T Consensus       284 l~~dp~~Rps~~~ll~~L~~~~~~~~~~~  312 (317)
T 2buj_A          284 MTVDPHQRPHIPLLLSQLEALQPPAPGQH  312 (317)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHTCCCCCC--
T ss_pred             hhcChhhCCCHHHHHHHhhhcCCCCCCCC
Confidence            99999999999999999998877655443

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=1.3e-27  Score=181.50  Aligned_cols=140  Identities=21%  Similarity=0.300  Sum_probs=109.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Cccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~   80 (176)
                      ...+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++|+|||+++........     ...+...+.
T Consensus       141 ~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~  217 (333)
T 1mqb_A          141 DGEFSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWT  217 (333)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCCcccccc
Confidence            467999999999999999999999999   999999999999999999999999998765433211     111222233


Q ss_pred             ecC-CCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKG-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +|+ .....++.++||||||+++|++++ +..||.                        ..+.+++.+||..+|.+||++
T Consensus       218 aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~  297 (333)
T 1mqb_A          218 APEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKF  297 (333)
T ss_dssp             CHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCH
T ss_pred             CchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHCCCcCCCcccCCHHHHHHHHHHcCCChhhCcCH
Confidence            333 346778999999999999999987 666552                        358899999999999999999


Q ss_pred             HHHHHHHHhhhhcC
Q 044320          135 LEVARQLENISSML  148 (176)
Q Consensus       135 ~~i~~~l~~~~~~~  148 (176)
                      .++++.|+++....
T Consensus       298 ~~l~~~L~~~~~~~  311 (333)
T 1mqb_A          298 ADIVSILDKLIRAP  311 (333)
T ss_dssp             HHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887654

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.94  E-value=2.7e-27  Score=179.08  Aligned_cols=131  Identities=18%  Similarity=0.227  Sum_probs=109.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~~   84 (176)
                      ..+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++++|||++.......  .....|...+.+|+.
T Consensus       136 ~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~  212 (321)
T 2c30_A          136 VRLNEEQIATVCEAVLQALAYLHAQG---VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEV  212 (321)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhh
Confidence            46999999999999999999999999   9999999999999999999999999987654332  222344555554443


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                       ....++.++||||||+++|+|.++..||.                          ..+.+++.+||..+|++||++.++
T Consensus       213 ~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el  292 (321)
T 2c30_A          213 ISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQEL  292 (321)
T ss_dssp             HTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             hcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence             46678899999999999999988876652                          347899999999999999999999


Q ss_pred             HHH
Q 044320          138 ARQ  140 (176)
Q Consensus       138 ~~~  140 (176)
                      ++.
T Consensus       293 l~h  295 (321)
T 2c30_A          293 LDH  295 (321)
T ss_dssp             HTS
T ss_pred             hcC
Confidence            874

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.94  E-value=2.2e-27  Score=180.87  Aligned_cols=132  Identities=19%  Similarity=0.244  Sum_probs=110.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC--CCCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP--NINGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++.....  ......|...+.+|+
T Consensus        99 ~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE  175 (337)
T 1o6l_A           99 ERVFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPE  175 (337)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCCHHHEEECCCCCEEEeeccchhhcccCCCcccccccChhhCChh
Confidence            356899999999999999999999999   999999999999999999999999999764322  222334555555555


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCC-----CH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARP-----SM  134 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp-----~~  134 (176)
                      . ....++.++|+||+|+++|+|+++..||                       +..+.+++.+||..+|.+||     ++
T Consensus       176 ~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~  255 (337)
T 1o6l_A          176 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDA  255 (337)
T ss_dssp             GGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTH
T ss_pred             hhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCH
Confidence            4 4677899999999999999999887765                       23578999999999999999     88


Q ss_pred             HHHHHH
Q 044320          135 LEVARQ  140 (176)
Q Consensus       135 ~~i~~~  140 (176)
                      .++++.
T Consensus       256 ~ei~~h  261 (337)
T 1o6l_A          256 KEVMEH  261 (337)
T ss_dssp             HHHHTS
T ss_pred             HHHHcC
Confidence            888653

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.94  E-value=1.2e-27  Score=181.03  Aligned_cols=142  Identities=22%  Similarity=0.248  Sum_probs=114.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-CccccceeeecC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-GVVGHVSIVVKG-   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~~~-   83 (176)
                      ...+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++........ ...+...+.+|+ 
T Consensus       136 ~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~  212 (327)
T 1fvr_A          136 ASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIES  212 (327)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCccceEEEcCCCeEEEcccCcCccccccccccCCCCCccccChhh
Confidence            457999999999999999999999999   999999999999999999999999998754322111 111222233333 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                      .....++.++||||+|+++|+|++ +..||                        +..+.+++.+||..+|.+||++.+++
T Consensus       213 ~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell  292 (327)
T 1fvr_A          213 LNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL  292 (327)
T ss_dssp             HHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             hccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence            335567889999999999999997 76665                        23588999999999999999999999


Q ss_pred             HHHHhhhhcCCC
Q 044320          139 RQLENISSMLPE  150 (176)
Q Consensus       139 ~~l~~~~~~~~~  150 (176)
                      +.|.++......
T Consensus       293 ~~L~~~~~~~~~  304 (327)
T 1fvr_A          293 VSLNRMLEERKT  304 (327)
T ss_dssp             HHHHHHHHSSSC
T ss_pred             HHHHHHHHhhcC
Confidence            999998887543

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.94  E-value=5.3e-28  Score=188.14  Aligned_cols=131  Identities=19%  Similarity=0.218  Sum_probs=103.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe----CCCCCeEEeecCCcccCCCCC-----CCCccccc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL----DSKFTPKVFDFEISRLAPVPN-----INGVVGHV   77 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~----~~~~~~~l~dfg~~~~~~~~~-----~~~~~~~~   77 (176)
                      ..+++.+++.++.|++.||.|||+++   ++||||||+||++    +.++.++|+|||+++......     .....+..
T Consensus       123 ~~l~~~~~~~i~~qi~~al~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~  199 (405)
T 3rgf_A          123 VQLPRGMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTF  199 (405)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC---EeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecC
Confidence            35999999999999999999999999   9999999999999    677899999999998754321     12233455


Q ss_pred             eeeecCCC-C-CCCCcccchhhHhHHHHHHhccChHH-------------------------------------------
Q 044320           78 SIVVKGTH-T-QQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------  112 (176)
Q Consensus        78 ~~~~~~~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------  112 (176)
                      ++.+|+.. + ..++.++||||+||++|+|+++..+|                                           
T Consensus       200 ~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~  279 (405)
T 3rgf_A          200 WYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHS  279 (405)
T ss_dssp             TTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHH
T ss_pred             cccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchh
Confidence            55555543 3 45899999999999999999988766                                           


Q ss_pred             ---------------------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 ---------------------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 ---------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                                 ...+.+++.+||..||.+|||+.++++.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~h  334 (405)
T 3rgf_A          280 TLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQD  334 (405)
T ss_dssp             HHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence                                       2346789999999999999999999875

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.94  E-value=2.3e-27  Score=186.14  Aligned_cols=99  Identities=22%  Similarity=0.225  Sum_probs=81.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----------------   69 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----------------   69 (176)
                      +..+++.++..++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||+++......                
T Consensus       123 ~~~l~~~~~~~i~~qil~aL~~LH~~g---ivHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~  199 (432)
T 3n9x_A          123 PIFLTEEHIKTILYNLLLGENFIHESG---IIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGP  199 (432)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEEC--------------------
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHeEECCCCCEEEccCCCcccccccccccccccccccccccc
Confidence            456999999999999999999999999   9999999999999999999999999998654321                


Q ss_pred             --------CCCccccceeeecCC--CCCCCCcccchhhHhHHHHHHhc
Q 044320           70 --------INGVVGHVSIVVKGT--HTQQLTEKSDIYGLGIACLYMGL  107 (176)
Q Consensus        70 --------~~~~~~~~~~~~~~~--~~~~~~~~~Dv~s~G~~l~~l~~  107 (176)
                              .....++.++.+|+.  ....++.++||||+||++|||++
T Consensus       200 ~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~  247 (432)
T 3n9x_A          200 HNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLN  247 (432)
T ss_dssp             -----------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHT
T ss_pred             cccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHh
Confidence                    123345566666664  36678999999999999999986

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=3.4e-27  Score=181.60  Aligned_cols=130  Identities=19%  Similarity=0.203  Sum_probs=109.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH-   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~-   85 (176)
                      ..+++.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++...... ....+..++.+|+.. 
T Consensus       123 ~~l~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~-~~~~~t~~y~aPE~~~  198 (367)
T 1cm8_A          123 EKLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQADSEM-TGYVVTRWYRAPEVIL  198 (367)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCSSC-CSSCSCGGGCCTHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCHHHEEEcCCCCEEEEeeeccccccccc-CcCcCCCCcCCHHHHh
Confidence            46899999999999999999999999   9999999999999999999999999998765432 233455566666543 


Q ss_pred             C-CCCCcccchhhHhHHHHHHhccChHHH---------------------------------------------------
Q 044320           86 T-QQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------------------------------  113 (176)
Q Consensus        86 ~-~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------------------------------  113 (176)
                      + ..++.++||||+||++|+|.++..+|.                                                   
T Consensus       199 ~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (367)
T 1cm8_A          199 NWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILT  278 (367)
T ss_dssp             TTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCT
T ss_pred             CCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCC
Confidence            3 678999999999999999988776542                                                   


Q ss_pred             ---HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 ---KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 ---~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                         ..+.+++.+|+..||.+|||+.++++.
T Consensus       279 ~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h  308 (367)
T 1cm8_A          279 NASPLAVNLLEKMLVLDAEQRVTAGEALAH  308 (367)
T ss_dssp             TCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence               246789999999999999999998873

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.94  E-value=3.7e-28  Score=186.96  Aligned_cols=139  Identities=21%  Similarity=0.221  Sum_probs=111.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC---CeEEeecCCcccCCCCC----CCCcccccee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF---TPKVFDFEISRLAPVPN----INGVVGHVSI   79 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~---~~~l~dfg~~~~~~~~~----~~~~~~~~~~   79 (176)
                      ..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++   .+||+|||+++......    .....+...+
T Consensus       176 ~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y  252 (367)
T 3l9p_A          176 SSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKW  252 (367)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGG
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccE
Confidence            56999999999999999999999999   99999999999998554   59999999986432111    1112233344


Q ss_pred             eecC-CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCC
Q 044320           80 VVKG-THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        80 ~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      .+|+ .....++.++|||||||++|+|++ +..||                        +..+.+++.+||+.+|.+||+
T Consensus       253 ~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps  332 (367)
T 3l9p_A          253 MPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPN  332 (367)
T ss_dssp             CCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             ECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHhHCcC
Confidence            4444 346778999999999999999987 65544                        235889999999999999999


Q ss_pred             HHHHHHHHHhhhhcC
Q 044320          134 MLEVARQLENISSML  148 (176)
Q Consensus       134 ~~~i~~~l~~~~~~~  148 (176)
                      +.++++.|+.+....
T Consensus       333 ~~eil~~l~~~~~~~  347 (367)
T 3l9p_A          333 FAIILERIEYCTQDP  347 (367)
T ss_dssp             HHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHhhCh
Confidence            999999999887653

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.94  E-value=2.8e-28  Score=195.89  Aligned_cols=140  Identities=21%  Similarity=0.301  Sum_probs=114.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccc-eeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHV-SIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~-~~~~   81 (176)
                      +..+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++.......   ....+.. |.++
T Consensus       357 ~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aP  433 (535)
T 2h8h_A          357 GKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP  433 (535)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCH
Confidence            356999999999999999999999999   99999999999999999999999999987553221   1112222 3334


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++||||||+++|||.+ +..||                        +..+.+++.+||..+|++||++.+
T Consensus       434 E~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~  513 (535)
T 2h8h_A          434 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEY  513 (535)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHH
Confidence            43446778999999999999999988 55544                        235889999999999999999999


Q ss_pred             HHHHHHhhhhcC
Q 044320          137 VARQLENISSML  148 (176)
Q Consensus       137 i~~~l~~~~~~~  148 (176)
                      +++.|+.+....
T Consensus       514 l~~~L~~~~~~~  525 (535)
T 2h8h_A          514 LQAFLEDYFTST  525 (535)
T ss_dssp             HHHHHHTSSCCC
T ss_pred             HHHHHHHHhhcc
Confidence            999999877654

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.94  E-value=1.9e-27  Score=177.74  Aligned_cols=138  Identities=25%  Similarity=0.375  Sum_probs=111.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeecC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVKG   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~~   83 (176)
                      ..+++.+++.++.|++.||.|+|+++   ++||||||+||+++.++.++++|||++........   ....+...+.+|+
T Consensus       106 ~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE  182 (294)
T 4eqm_A          106 GPLSVDTAINFTNQILDGIKHAHDMR---IVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPE  182 (294)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCSSSTTC-------------CCSSCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHh
Confidence            46999999999999999999999999   99999999999999999999999999976543321   1223444454444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHH----------------------------HHHHHHHHHhhcccCCCCCC-C
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------LKRFMSLALKYCEDETKARP-S  133 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------~~~l~~l~~~~~~~~p~~Rp-~  133 (176)
                      . .+..++.++||||+|+++|++.++..||                            +..+.+++.+|+..+|.+|| +
T Consensus       183 ~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~  262 (294)
T 4eqm_A          183 QAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKT  262 (294)
T ss_dssp             HHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSS
T ss_pred             HhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcCCHhHcccc
Confidence            3 4667889999999999999998887765                            23588999999999999998 8


Q ss_pred             HHHHHHHHHhhhhc
Q 044320          134 MLEVARQLENISSM  147 (176)
Q Consensus       134 ~~~i~~~l~~~~~~  147 (176)
                      ++++.+.|+.+...
T Consensus       263 ~~~l~~~l~~~~~~  276 (294)
T 4eqm_A          263 IQEMKDDLSSVLHE  276 (294)
T ss_dssp             HHHHHHHHHTSSSS
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999877654

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.94  E-value=1.5e-27  Score=181.56  Aligned_cols=132  Identities=18%  Similarity=0.266  Sum_probs=110.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~~   84 (176)
                      ...+++..++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++........ ....+...+.+|+.
T Consensus       124 ~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~  200 (335)
T 3dls_A          124 HPRLDEPLASYIFRQLVSAVGYLRLKD---IIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEV  200 (335)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCEECSCGGGCCHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEEeccCHHHEEEcCCCcEEEeecccceECCCCCceeccCCCccccChhh
Confidence            456999999999999999999999999   99999999999999999999999999987654332 22334555555554


Q ss_pred             C-CCCC-CcccchhhHhHHHHHHhccChHH-----------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320           85 H-TQQL-TEKSDIYGLGIACLYMGLYSFEY-----------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus        85 ~-~~~~-~~~~Dv~s~G~~l~~l~~~~~~~-----------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                      . ...+ +.++||||||+++|++.++..||                 +..+.+++.+||..+|++||++.++++.
T Consensus       201 ~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          201 LMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEETVEAAIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             HTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGGTTTCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             hcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHHHhhccCCCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            3 4444 78899999999999998887775                 4579999999999999999999999875

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.94  E-value=2.1e-27  Score=181.33  Aligned_cols=132  Identities=19%  Similarity=0.157  Sum_probs=108.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC------CCCcccccee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN------INGVVGHVSI   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~------~~~~~~~~~~   79 (176)
                      ...+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++......      .....+...+
T Consensus       118 ~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y  194 (351)
T 3mi9_A          118 LVKFTLSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWY  194 (351)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCc
Confidence            456999999999999999999999999   9999999999999999999999999987654211      1223345556


Q ss_pred             eecCCC--CCCCCcccchhhHhHHHHHHhccChHH---------------------------------------------
Q 044320           80 VVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------------  112 (176)
Q Consensus        80 ~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------------  112 (176)
                      .+|+..  ...++.++||||+|+++|+|.++..+|                                             
T Consensus       195 ~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (351)
T 3mi9_A          195 RPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRK  274 (351)
T ss_dssp             CCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCC
T ss_pred             cCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccC
Confidence            555543  345799999999999999998876654                                             


Q ss_pred             ----------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 ----------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 ----------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                ...+.+++.+||..||++||++.++++.
T Consensus       275 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  312 (351)
T 3mi9_A          275 VKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  312 (351)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence                      2347789999999999999999988874

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.94  E-value=7e-28  Score=177.14  Aligned_cols=138  Identities=22%  Similarity=0.326  Sum_probs=113.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC---CCCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN---INGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~   82 (176)
                      +..+++.+++.++.|++.||.|||+++   ++|+||+|+||+++.++.++++|||++.......   .....+...+.+|
T Consensus        98 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aP  174 (267)
T 3t9t_A           98 RGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASP  174 (267)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCH
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEECCCCCEEEcccccccccccccccccccccccccccCh
Confidence            456899999999999999999999999   9999999999999999999999999987654321   1112222333333


Q ss_pred             CC-CCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 GT-HTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~~-~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +. ....++.++|+||+|+++|++.+ +..||                        +..+.+++.+||..+|.+||++.+
T Consensus       175 E~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  254 (267)
T 3t9t_A          175 EVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSR  254 (267)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCCcCCCCccCcHHHHHHHHHHccCChhhCcCHHH
Confidence            33 35678899999999999999988 66654                        235889999999999999999999


Q ss_pred             HHHHHHhhhh
Q 044320          137 VARQLENISS  146 (176)
Q Consensus       137 i~~~l~~~~~  146 (176)
                      +++.|+++..
T Consensus       255 ll~~L~~l~~  264 (267)
T 3t9t_A          255 LLRQLAEIAE  264 (267)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.94  E-value=1.7e-27  Score=181.36  Aligned_cols=132  Identities=20%  Similarity=0.267  Sum_probs=110.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~~   84 (176)
                      +..+++.+++.++.|++.||.|||+.+   ++||||||+||+++.++.+||+|||++........ ....|...+.+|+.
T Consensus       102 ~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~  178 (336)
T 3h4j_B          102 KKRMTEDEGRRFFQQIICAIEYCHRHK---IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEV  178 (336)
T ss_dssp             HCSCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTTCCCTTSTTTSCGGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCchhhEEEcCCCCEEEEEeccceeccCCcccccccCCcCcCCHHH
Confidence            356999999999999999999999999   99999999999999999999999999987654332 23345555666655


Q ss_pred             C-CCCC-CcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           85 H-TQQL-TEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        85 ~-~~~~-~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      . +..+ +.++||||+|+++|+|.++..||                       +..+.+++.+||..+|.+|||+.++++
T Consensus       179 ~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~  258 (336)
T 3h4j_B          179 INGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRR  258 (336)
T ss_dssp             SCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCBCCCCSSCCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred             HcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence            4 3343 67999999999999998887765                       346899999999999999999999976


Q ss_pred             H
Q 044320          140 Q  140 (176)
Q Consensus       140 ~  140 (176)
                      .
T Consensus       259 h  259 (336)
T 3h4j_B          259 D  259 (336)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.94  E-value=7e-28  Score=179.57  Aligned_cols=140  Identities=19%  Similarity=0.210  Sum_probs=113.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Cccccc-ee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVGHV-SI   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~~-~~   79 (176)
                      ...+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++++|||++.........     ...+.. +.
T Consensus       111 ~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~  187 (291)
T 1xbb_A          111 NRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWY  187 (291)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGC
T ss_pred             CcCCCHHHHHHHHHHHHHHHHHHHhCC---eEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceee
Confidence            456999999999999999999999999   999999999999999999999999998765443221     111122 33


Q ss_pred             eecCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           80 VVKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        80 ~~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +|+......++.++||||||+++|++.+ +..||                        +..+.+++.+||..+|.+||++
T Consensus       188 aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  267 (291)
T 1xbb_A          188 APECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGF  267 (291)
T ss_dssp             CHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             ChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence            3333335567889999999999999998 66654                        2468999999999999999999


Q ss_pred             HHHHHHHHhhhhcC
Q 044320          135 LEVARQLENISSML  148 (176)
Q Consensus       135 ~~i~~~l~~~~~~~  148 (176)
                      .++++.|+.+....
T Consensus       268 ~~l~~~L~~~~~~~  281 (291)
T 1xbb_A          268 AAVELRLRNYYYDV  281 (291)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887653

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.94  E-value=2e-27  Score=183.60  Aligned_cols=103  Identities=23%  Similarity=0.201  Sum_probs=82.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhc--CCCCCeEecCCCCCCeEeC--CCCCeEEeecCCcccCCCCCCCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHT--EADPPIIHWDIKATNTLLD--SKFTPKVFDFEISRLAPVPNINGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~--~~~~~~vH~dl~~~nil~~--~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~   81 (176)
                      ...+++.++..++.|++.||.|||+  .+   |+||||||+||+++  .++.+||+|||++........ ...+...+.+
T Consensus       151 ~~~~~~~~~~~i~~qi~~al~~lH~~~~~---ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~~-~~~~t~~y~a  226 (382)
T 2vx3_A          151 FRGVSLNLTRKFAQQMCTALLFLATPELS---IIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIY-QYIQSRFYRS  226 (382)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHTSTTTC---EECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCCC-SSCSCGGGCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhccCCCC---EEcCCCCcccEEEecCCCCcEEEEeccCceecccccc-cccCCccccC
Confidence            3569999999999999999999995  56   99999999999995  477899999999987654332 2334444444


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhccChHH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGLYSFEY  112 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~  112 (176)
                      |+ ..+..++.++|||||||++|+|+++..||
T Consensus       227 PE~~~~~~~~~~~DiwSlG~il~elltg~~pf  258 (382)
T 2vx3_A          227 PEVLLGMPYDLAIDMWSLGCILVEMHTGEPLF  258 (382)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             hHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence            44 44667899999999999999998876654

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.94  E-value=3.5e-27  Score=178.18  Aligned_cols=129  Identities=20%  Similarity=0.298  Sum_probs=104.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--------------CCc
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--------------NGV   73 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--------------~~~   73 (176)
                      ..++..++.++.|++.||+|||+++   ++||||||+||+++.++.++|+|||+++.......              ...
T Consensus       160 ~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~  236 (332)
T 3qd2_B          160 DREHGVCLHIFIQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQ  236 (332)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSC
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhCC---eeecCCCcccEEEeCCCCEEEeecCcccccccchhhcccccccccccccccc
Confidence            3567779999999999999999999   99999999999999999999999999987654321              122


Q ss_pred             cccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH----------------------HHHHHHHHhhcccCCCC
Q 044320           74 VGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------KRFMSLALKYCEDETKA  130 (176)
Q Consensus        74 ~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------~~l~~l~~~~~~~~p~~  130 (176)
                      .+...+.+|+. ....++.++||||+|+++|++.++..++.                      ..+.+++.+||..+|++
T Consensus       237 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  316 (332)
T 3qd2_B          237 VGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTE  316 (332)
T ss_dssp             C-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHHCSSGGG
T ss_pred             CCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcccccCChhHHHHHHHHccCCCCc
Confidence            34444544443 36678999999999999999988765543                      24678999999999999


Q ss_pred             CCCHHHHHH
Q 044320          131 RPSMLEVAR  139 (176)
Q Consensus       131 Rp~~~~i~~  139 (176)
                      ||++.++++
T Consensus       317 Rps~~~~l~  325 (332)
T 3qd2_B          317 RPEATDIIE  325 (332)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHhh
Confidence            999999886

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.94  E-value=2.9e-27  Score=179.21  Aligned_cols=131  Identities=18%  Similarity=0.303  Sum_probs=108.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC----CeEEeecCCcccCCCCC-CCCccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF----TPKVFDFEISRLAPVPN-INGVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~----~~~l~dfg~~~~~~~~~-~~~~~~~~~~~   80 (176)
                      +..+++.+++.++.|++.||.|||+.+   ++||||||+||+++.++    .++|+|||++....... .....+...+.
T Consensus       108 ~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~  184 (326)
T 2y0a_A          108 KESLTEEEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFV  184 (326)
T ss_dssp             SSCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSCCCCCCSCTTTC
T ss_pred             cCCcCHHHHHHHHHHHHHHHHHHHHCC---eEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCccccccCCcCcC
Confidence            456999999999999999999999999   99999999999998877    79999999997764322 22333455555


Q ss_pred             ecCC-CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCC
Q 044320           81 VKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARP  132 (176)
Q Consensus        81 ~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +|+. ....++.++||||+|+++|+|.++..||.                           ..+.+++.+||..+|.+||
T Consensus       185 aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp  264 (326)
T 2y0a_A          185 APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRM  264 (326)
T ss_dssp             CHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSC
T ss_pred             CceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCCcCccccccCCHHHHHHHHHHccCChhhCC
Confidence            5444 45678999999999999999988877651                           2477899999999999999


Q ss_pred             CHHHHHH
Q 044320          133 SMLEVAR  139 (176)
Q Consensus       133 ~~~~i~~  139 (176)
                      ++.++++
T Consensus       265 t~~e~l~  271 (326)
T 2y0a_A          265 TIQDSLQ  271 (326)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHhc
Confidence            9999986

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.94  E-value=2.1e-27  Score=179.25  Aligned_cols=131  Identities=18%  Similarity=0.211  Sum_probs=107.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~~   84 (176)
                      ..+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++......  .....+...+.+|+.
T Consensus       103 ~~~~~~~~~~~~~qi~~aL~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~  179 (317)
T 2pmi_A          103 RGLELNLVKYFQWQLLQGLAFCHENK---ILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDV  179 (317)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCChHHeEEcCCCCEEECcCccceecCCCcccCCCCcccccccCchH
Confidence            56999999999999999999999999   9999999999999999999999999997654322  222334445555554


Q ss_pred             C--CCCCCcccchhhHhHHHHHHhccChHH--------------------------------------------------
Q 044320           85 H--TQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------------------------------  112 (176)
Q Consensus        85 ~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------------------------------  112 (176)
                      .  ...++.++||||+||++|+|.++..||                                                  
T Consensus       180 ~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (317)
T 2pmi_A          180 LMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQ  259 (317)
T ss_dssp             HTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHG
T ss_pred             hhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhc
Confidence            3  246899999999999999998876554                                                  


Q ss_pred             -------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 -------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 -------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                             ...+.+++.+||..+|++|||+.++++.
T Consensus       260 ~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h  294 (317)
T 2pmi_A          260 PHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH  294 (317)
T ss_dssp             GGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             ccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence                   2357789999999999999999988763

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.94  E-value=2.4e-27  Score=175.60  Aligned_cols=132  Identities=23%  Similarity=0.297  Sum_probs=106.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC-C
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT-H   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~-~   85 (176)
                      ..+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++............+...+.+|+. .
T Consensus       104 ~~~~~~~~~~~~~qi~~~l~~LH~~~---i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~  180 (279)
T 3fdn_A          104 SKFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIE  180 (279)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHTTT---CEECCCCGGGEEECTTSCEEECSCCEESCC--------CCCCTTCCHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---EecccCChHhEEEcCCCCEEEEeccccccCCcccccccCCCCCccCHhHhc
Confidence            56899999999999999999999999   9999999999999999999999999886655444333344444444443 4


Q ss_pred             CCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHHHHHHHH
Q 044320           86 TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSMLEVARQL  141 (176)
Q Consensus        86 ~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~~l  141 (176)
                      +..++.++||||+|+++|++.++..||.                       ..+.+++.+||..+|.+||++.++++.-
T Consensus       181 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~  259 (279)
T 3fdn_A          181 GRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHP  259 (279)
T ss_dssp             TCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHCH
T ss_pred             cCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhCc
Confidence            6677889999999999999988877642                       3578999999999999999999998753

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.94  E-value=2.3e-27  Score=184.15  Aligned_cols=126  Identities=19%  Similarity=0.236  Sum_probs=105.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC--CCCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP--NINGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+++   |+||||||+||+++.++.+||+|||+++.....  ......|+..+.+|+
T Consensus       147 ~~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE  223 (396)
T 4dc2_A          147 QRKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPE  223 (396)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEECCCCCEEEeecceeeecccCCCccccccCCcccCCch
Confidence            356999999999999999999999999   999999999999999999999999999763322  223334555555554


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------------HHHHHHHHhhcccCCCC
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------------KRFMSLALKYCEDETKA  130 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------------~~l~~l~~~~~~~~p~~  130 (176)
                      . ....++.++|+||+||++|+|+++..||.                                ..+.+++.+||..+|.+
T Consensus       224 ~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~  303 (396)
T 4dc2_A          224 ILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKE  303 (396)
T ss_dssp             HHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTT
T ss_pred             hhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCCCcCCHHHHHHHHHHhcCCHhH
Confidence            4 46778999999999999999999888772                                24788999999999999


Q ss_pred             CCCH
Q 044320          131 RPSM  134 (176)
Q Consensus       131 Rp~~  134 (176)
                      ||++
T Consensus       304 R~~~  307 (396)
T 4dc2_A          304 RLGC  307 (396)
T ss_dssp             STTC
T ss_pred             cCCC
Confidence            9985

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.94  E-value=4.5e-27  Score=181.95  Aligned_cols=131  Identities=22%  Similarity=0.260  Sum_probs=109.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~~   84 (176)
                      +..+++.++..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++....... .....|+..+.+|+.
T Consensus       109 ~~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~  185 (384)
T 4fr4_A          109 NVHFKEETVKLFICELVMALDYLQNQR---IIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEM  185 (384)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCCCCSCGGGCCGGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCcHHHeEECCCCCEEEeccceeeeccCCCceeccCCCccccCCee
Confidence            457999999999999999999999999   9999999999999999999999999998764332 233456666666665


Q ss_pred             C----CCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCC-
Q 044320           85 H----TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPS-  133 (176)
Q Consensus        85 ~----~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~-  133 (176)
                      .    +..++.++|+||+||++|+|+++..||.                          ..+.+++.+||..+|.+||+ 
T Consensus       186 ~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~  265 (384)
T 4fr4_A          186 FSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQ  265 (384)
T ss_dssp             TCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCS
T ss_pred             eccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccCCCCcCCHHHHHHHHHHhcCCHhHhccc
Confidence            4    3458899999999999999998877762                          35789999999999999998 


Q ss_pred             HHHHHH
Q 044320          134 MLEVAR  139 (176)
Q Consensus       134 ~~~i~~  139 (176)
                      +.++.+
T Consensus       266 ~~~l~~  271 (384)
T 4fr4_A          266 LSDVQN  271 (384)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            666543

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.94  E-value=4.3e-27  Score=180.76  Aligned_cols=131  Identities=22%  Similarity=0.313  Sum_probs=109.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC----CeEEeecCCcccCCCCC-CCCccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF----TPKVFDFEISRLAPVPN-INGVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~----~~~l~dfg~~~~~~~~~-~~~~~~~~~~~   80 (176)
                      +..+++.++..++.|++.||.|||+++   ++||||||+||+++.++    .++|+|||++....... .....|...+.
T Consensus       109 ~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~  185 (361)
T 2yab_A          109 KESLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFV  185 (361)
T ss_dssp             CSCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCCCCCCCSCGGGC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCccccCCCCccEE
Confidence            457999999999999999999999999   99999999999998776    79999999998765432 22334555555


Q ss_pred             ecCC-CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCC
Q 044320           81 VKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARP  132 (176)
Q Consensus        81 ~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +|+. ....++.++||||+|+++|+|+++..||.                           ..+.+++.+||..+|.+||
T Consensus       186 aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~  265 (361)
T 2yab_A          186 APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRL  265 (361)
T ss_dssp             CHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSC
T ss_pred             CchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCc
Confidence            5554 35678999999999999999988877651                           2478899999999999999


Q ss_pred             CHHHHHH
Q 044320          133 SMLEVAR  139 (176)
Q Consensus       133 ~~~~i~~  139 (176)
                      ++.++++
T Consensus       266 t~~e~l~  272 (361)
T 2yab_A          266 TIQEALR  272 (361)
T ss_dssp             CHHHHHT
T ss_pred             CHHHHhc
Confidence            9999874

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=1.2e-27  Score=178.08  Aligned_cols=144  Identities=17%  Similarity=0.227  Sum_probs=117.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Ccccccee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVGHVSI   79 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~   79 (176)
                      .+..+++.+++.++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.........     ...+...+
T Consensus       103 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y  179 (287)
T 1u59_A          103 KREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKW  179 (287)
T ss_dssp             CTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGG
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHHHHCC---EeeCCCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccccc
Confidence            4566999999999999999999999999   999999999999999999999999999766433211     11122333


Q ss_pred             eecCC-CCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCC
Q 044320           80 VVKGT-HTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        80 ~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      .+|+. ....++.++|+||+|+++|++.+ +..||                        +..+.+++.+||..+|.+||+
T Consensus       180 ~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps  259 (287)
T 1u59_A          180 YAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPD  259 (287)
T ss_dssp             CCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCC
T ss_pred             cCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcCCcCCCCCCcCHHHHHHHHHHcCCChhhCcC
Confidence            33333 35667889999999999999997 76665                        245889999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCC
Q 044320          134 MLEVARQLENISSMLPES  151 (176)
Q Consensus       134 ~~~i~~~l~~~~~~~~~~  151 (176)
                      +.++++.|+.+.......
T Consensus       260 ~~~l~~~l~~~~~~~~~~  277 (287)
T 1u59_A          260 FLTVEQRMRACYYSLASK  277 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCc
Confidence            999999999998765443

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.94  E-value=5.5e-27  Score=184.56  Aligned_cols=132  Identities=17%  Similarity=0.163  Sum_probs=110.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC---CCCCeEEeecCCcccCCCCCC--CCccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD---SKFTPKVFDFEISRLAPVPNI--NGVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~---~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~   80 (176)
                      +..+++.++..++.|++.||.|||+++   ++||||||+||+++   .++.+||+|||++........  ....|...+.
T Consensus       104 ~~~~~e~~~~~i~~qil~aL~~lH~~g---ivHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~  180 (444)
T 3soa_A          104 REYYSEADASHCIQQILEAVLHCHQMG---VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYL  180 (444)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCcccC
Confidence            456999999999999999999999999   99999999999998   457899999999976654332  2334556666


Q ss_pred             ecCCC-CCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           81 VKGTH-TQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        81 ~~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +|+.. ...++.++||||+||++|+|+++..||                           +..+.+++.+||..+|.+||
T Consensus       181 APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  260 (444)
T 3soa_A          181 SPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRI  260 (444)
T ss_dssp             CHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSC
T ss_pred             CHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCC
Confidence            55544 567899999999999999998887765                           24588999999999999999


Q ss_pred             CHHHHHHH
Q 044320          133 SMLEVARQ  140 (176)
Q Consensus       133 ~~~~i~~~  140 (176)
                      ++.++++.
T Consensus       261 ta~e~L~h  268 (444)
T 3soa_A          261 TAAEALKH  268 (444)
T ss_dssp             CHHHHHHS
T ss_pred             CHHHHhcC
Confidence            99998763

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.94  E-value=1.2e-27  Score=178.13  Aligned_cols=131  Identities=18%  Similarity=0.204  Sum_probs=104.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++.......  .....+...+.+|+
T Consensus        94 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE  170 (288)
T 1ob3_A           94 EGGLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPD  170 (288)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEeECccccccCccccccccccccccccCch
Confidence            467999999999999999999999999   9999999999999999999999999987644322  12223444455554


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHH-------------------------------------------------
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------------  112 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------------  112 (176)
                      ..  ...++.++||||+|+++|+|.++..+|                                                 
T Consensus       171 ~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (288)
T 1ob3_A          171 VLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFL  250 (288)
T ss_dssp             HHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTC
T ss_pred             heeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHh
Confidence            43  345899999999999999998877654                                                 


Q ss_pred             ---HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ---LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ---~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                         +..+.+++.+||..+|++||++.++++
T Consensus       251 ~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          251 KGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             CSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence               234568999999999999999999875

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.94  E-value=1.1e-27  Score=182.63  Aligned_cols=131  Identities=22%  Similarity=0.293  Sum_probs=104.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~   81 (176)
                      +..+++.++..++.|++.||.|||+++   ++||||||+||+++ ++.+||+|||+++.......    ....|...+.+
T Consensus       102 ~~~~~~~~~~~i~~qi~~al~~lH~~~---iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~a  177 (343)
T 3dbq_A          102 KKSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMP  177 (343)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEE-TTEEEECCCSSSCCC------------CCCCSSCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCcceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCC
Confidence            467999999999999999999999999   99999999999996 57899999999987643321    12335555555


Q ss_pred             cCCC------------CCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhh
Q 044320           82 KGTH------------TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKY  123 (176)
Q Consensus        82 ~~~~------------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~  123 (176)
                      |+..            ...++.++||||||+++|+|.++..||.                          ..+.+++.+|
T Consensus       178 PE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  257 (343)
T 3dbq_A          178 PEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCC  257 (343)
T ss_dssp             HHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHH
T ss_pred             HHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcccCCcccCCHHHHHHHHHH
Confidence            5543            2668889999999999999999887763                          2588999999


Q ss_pred             cccCCCCCCCHHHHHHH
Q 044320          124 CEDETKARPSMLEVARQ  140 (176)
Q Consensus       124 ~~~~p~~Rp~~~~i~~~  140 (176)
                      |..+|.+||++.++++.
T Consensus       258 L~~dp~~Rpt~~e~l~h  274 (343)
T 3dbq_A          258 LKRDPKQRISIPELLAH  274 (343)
T ss_dssp             TCSSTTTSCCHHHHHTS
T ss_pred             cCCChhHCCCHHHHHhC
Confidence            99999999999999865

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.94  E-value=8.4e-28  Score=182.17  Aligned_cols=139  Identities=22%  Similarity=0.225  Sum_probs=112.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~   81 (176)
                      ...+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++|+|||++.........    ...+...+.+
T Consensus       158 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a  234 (333)
T 2i1m_A          158 NSTASTRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMA  234 (333)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSC
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHhcCC---cccCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccC
Confidence            456899999999999999999999999   999999999999999999999999998764332211    1222233434


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhc-cChHH-------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGL-YSFEY-------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      |+ .....++.++||||||+++|+|.+ +..||                         +..+.+++.+||..+|.+||++
T Consensus       235 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~  314 (333)
T 2i1m_A          235 PESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTF  314 (333)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhccChhhCcCH
Confidence            33 346678999999999999999987 65443                         2357899999999999999999


Q ss_pred             HHHHHHHHhhhhc
Q 044320          135 LEVARQLENISSM  147 (176)
Q Consensus       135 ~~i~~~l~~~~~~  147 (176)
                      .++++.|+.+...
T Consensus       315 ~~l~~~L~~~~~~  327 (333)
T 2i1m_A          315 QQICSFLQEQAQE  327 (333)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987654

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.94  E-value=3.3e-27  Score=181.77  Aligned_cols=131  Identities=18%  Similarity=0.201  Sum_probs=105.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT-   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~-   84 (176)
                      +..+++.++..++.|++.||+|||+++   ++||||||+||+++.++.++|+|||+++....... ...+...+.+|+. 
T Consensus       138 ~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~-~~~~t~~y~aPE~~  213 (371)
T 4exu_A          138 GMEFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGLARHADAEMT-GYVVTRWYRAPEVI  213 (371)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECSTTCC---------CTTCCCTTSCHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCcCHHHeEECCCCCEEEEecCcccccccCcC-CcccCccccCHHHh
Confidence            345999999999999999999999999   99999999999999999999999999976544322 2233444444443 


Q ss_pred             CC-CCCCcccchhhHhHHHHHHhccChHH---------------------------------------------------
Q 044320           85 HT-QQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------------------  112 (176)
Q Consensus        85 ~~-~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------------------  112 (176)
                      .. ..++.++||||+|+++|+|.++..||                                                   
T Consensus       214 ~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (371)
T 4exu_A          214 LSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLF  293 (371)
T ss_dssp             SCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHS
T ss_pred             cCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhc
Confidence            33 67899999999999999998877654                                                   


Q ss_pred             ---HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 ---LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 ---~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                         ...+.+++.+||..+|++||++.++++.
T Consensus       294 ~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  324 (371)
T 4exu_A          294 PRASPQAADLLEKMLELDVDKRLTAAQALTH  324 (371)
T ss_dssp             TTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             cccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence               2457899999999999999999999764

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.94  E-value=2.5e-27  Score=182.46  Aligned_cols=131  Identities=21%  Similarity=0.179  Sum_probs=101.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecC-C
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKG-T   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~-~   84 (176)
                      ..+++.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++...... .....+...+.+|+ .
T Consensus       122 ~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~  198 (371)
T 2xrw_A          122 MELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVI  198 (371)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCCCC----------------CTTCCHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEEEeecccccccccccCCceecCCccCHHHh
Confidence            35899999999999999999999999   9999999999999999999999999997654332 11223444444444 3


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH----------------------------------------------------
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------------------------  112 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------------------------  112 (176)
                      .+..++.++||||+||++|+|.++..||                                                    
T Consensus       199 ~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (371)
T 2xrw_A          199 LGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPD  278 (371)
T ss_dssp             TTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCG
T ss_pred             cCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhccc
Confidence            4667899999999999999998876543                                                    


Q ss_pred             -------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 -------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 -------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                   ...+.+++.+||..||.+|||+.++++.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  319 (371)
T 2xrw_A          279 VLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  319 (371)
T ss_dssp             GGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             ccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence                         3457899999999999999999999864

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.94  E-value=6.7e-28  Score=197.05  Aligned_cols=139  Identities=19%  Similarity=0.207  Sum_probs=112.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Cccccc-ee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVGHV-SI   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~~-~~   79 (176)
                      +..+++.+++.++.|++.||+|||+++   |+||||||+||+++.++.+||+|||+++........     ...+.. |.
T Consensus       463 ~~~l~~~~~~~i~~qi~~~L~yLH~~~---iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~  539 (635)
T 4fl3_A          463 NRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWY  539 (635)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---EeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeee
Confidence            457999999999999999999999999   999999999999999999999999998765433211     111222 33


Q ss_pred             eecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           80 VVKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        80 ~~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +|+......++.++||||||+++|||++ +..||.                        ..+.+++.+||..+|++||++
T Consensus       540 APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~  619 (635)
T 4fl3_A          540 APECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGF  619 (635)
T ss_dssp             CHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             ChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCH
Confidence            3444446688999999999999999987 666652                        358899999999999999999


Q ss_pred             HHHHHHHHhhhhc
Q 044320          135 LEVARQLENISSM  147 (176)
Q Consensus       135 ~~i~~~l~~~~~~  147 (176)
                      .++++.|+.+...
T Consensus       620 ~~l~~~L~~~~~~  632 (635)
T 4fl3_A          620 AAVELRLRNYYYD  632 (635)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987654

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=1.9e-27  Score=180.00  Aligned_cols=132  Identities=16%  Similarity=0.192  Sum_probs=108.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC--CCCeEEeecCCcccCCCCCC-CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS--KFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~   82 (176)
                      ...+++.+++.++.|++.||.|||+++   ++||||||+||+++.  ++.++++|||++........ ....+...+.+|
T Consensus        96 ~~~~~~~~~~~i~~qi~~al~~lH~~g---ivH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aP  172 (321)
T 1tki_A           96 AFELNEREIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAP  172 (321)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCccccccCChhhcCc
Confidence            457999999999999999999999999   999999999999987  78999999999987654332 122344445444


Q ss_pred             CCC-CCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           83 GTH-TQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        83 ~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +.. ...++.++||||+|+++|+|+++..||                           +..+.+++.+||..+|.+|||+
T Consensus       173 E~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~  252 (321)
T 1tki_A          173 EVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTA  252 (321)
T ss_dssp             HHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             HHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCH
Confidence            443 555789999999999999998887765                           2357899999999999999999


Q ss_pred             HHHHHH
Q 044320          135 LEVARQ  140 (176)
Q Consensus       135 ~~i~~~  140 (176)
                      .++++.
T Consensus       253 ~e~l~h  258 (321)
T 1tki_A          253 SEALQH  258 (321)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            999874

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.94  E-value=2.5e-27  Score=183.91  Aligned_cols=132  Identities=18%  Similarity=0.183  Sum_probs=109.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC-CCCCeEEeecCCcccCCCCC-CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD-SKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~-~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~   83 (176)
                      +..+++..+..++.|++.||+|||+++   ++||||||+||+++ .++.+||+|||+++...... .....+..++.+|+
T Consensus       135 ~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE  211 (394)
T 4e7w_A          135 KQTMPMLLIKLYMYQLLRSLAYIHSIG---ICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPE  211 (394)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSSCSCGGGCCHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCCCcccccCcCccCHH
Confidence            567999999999999999999999999   99999999999998 78999999999998654332 22334455566555


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHHH------------------------------------------------
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------------  113 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------------  113 (176)
                      ..  ...++.++||||+||++|+|+++..+|.                                                
T Consensus       212 ~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (394)
T 4e7w_A          212 LIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFR  291 (394)
T ss_dssp             HHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSC
T ss_pred             HHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhcc
Confidence            43  3458999999999999999988876552                                                


Q ss_pred             ----HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 ----KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 ----~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                          ..+.+++.+||..+|.+||++.++++.
T Consensus       292 ~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  322 (394)
T 4e7w_A          292 PRTPPDAIDLISRLLEYTPSARLTAIEALCH  322 (394)
T ss_dssp             TTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             ccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence                357799999999999999999999864

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.94  E-value=3.8e-27  Score=180.91  Aligned_cols=131  Identities=18%  Similarity=0.208  Sum_probs=109.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----CCccccceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----NGVVGHVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~~   81 (176)
                      ..+++.++..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++........     ....+...+.+
T Consensus       123 ~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~a  199 (364)
T 3qyz_A          123 QHLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA  199 (364)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCC
Confidence            46899999999999999999999999   99999999999999999999999999976543321     22345556666


Q ss_pred             cCCC--CCCCCcccchhhHhHHHHHHhccChHH-----------------------------------------------
Q 044320           82 KGTH--TQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------------------------------  112 (176)
Q Consensus        82 ~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------------------------------  112 (176)
                      |+..  ...++.++||||+|+++|+|.++..+|                                               
T Consensus       200 PE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (364)
T 3qyz_A          200 PEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPW  279 (364)
T ss_dssp             HHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCH
T ss_pred             CHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCH
Confidence            6542  455899999999999999998877655                                               


Q ss_pred             -------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 -------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 -------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                             ...+.+++.+||..+|.+|||+.++++.
T Consensus       280 ~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  314 (364)
T 3qyz_A          280 NRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  314 (364)
T ss_dssp             HHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                   2357899999999999999999999863

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.94  E-value=5.3e-27  Score=180.14  Aligned_cols=141  Identities=14%  Similarity=0.122  Sum_probs=115.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-----------CCCeEEeecCCcccCCC----CC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-----------KFTPKVFDFEISRLAPV----PN   69 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-----------~~~~~l~dfg~~~~~~~----~~   69 (176)
                      ....+++.+++.++.|++.||+|||+++   |+||||||+||+++.           ++.+||+|||+++....    ..
T Consensus       165 ~~~~l~~~~~~~i~~qi~~~L~~lH~~~---ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~  241 (365)
T 3e7e_A          165 PEKVMPQGLVISFAMRMLYMIEQVHDCE---IIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTI  241 (365)
T ss_dssp             TTCSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEE
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHhhCC---eecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCce
Confidence            3567999999999999999999999999   999999999999988           89999999999965331    11


Q ss_pred             CCCccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHH-------------------HHHHHHHHHhhcccCCC
Q 044320           70 INGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------LKRFMSLALKYCEDETK  129 (176)
Q Consensus        70 ~~~~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------~~~l~~l~~~~~~~~p~  129 (176)
                      .....|+..+.+|+. .+..++.++|||||||++|+|+++..||                   .+.+.+++..|+..+|.
T Consensus       242 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~  321 (365)
T 3e7e_A          242 FTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGLFRRLPHLDMWNEFFHVMLNIPDC  321 (365)
T ss_dssp             ECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEEECSCCTTCSSHHHHHHHHHHHHCCCCT
T ss_pred             eeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCceeechhccccCcHHHHHHHHHHHcCCCCC
Confidence            223345555555554 4666899999999999999999887654                   45688999999999999


Q ss_pred             CC-CCHHHHHHHHHhhhhcC
Q 044320          130 AR-PSMLEVARQLENISSML  148 (176)
Q Consensus       130 ~R-p~~~~i~~~l~~~~~~~  148 (176)
                      +| |++.++.+.|+......
T Consensus       322 ~r~~~~~~l~~~l~~~l~~~  341 (365)
T 3e7e_A          322 HHLPSLDLLRQKLKKVFQQH  341 (365)
T ss_dssp             TCCCCHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHh
Confidence            98 77888999998877753

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.94  E-value=1.5e-27  Score=180.56  Aligned_cols=139  Identities=17%  Similarity=0.279  Sum_probs=112.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----CCccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----NGVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~   80 (176)
                      +..+++.+++.++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||++........     ....+...+.
T Consensus       139 ~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~  215 (326)
T 2w1i_A          139 KERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWY  215 (326)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC---EeccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEE
Confidence            356999999999999999999999999   99999999999999999999999999987654321     1112222233


Q ss_pred             ecC-CCCCCCCcccchhhHhHHHHHHhccChHH----------------------------------------HHHHHHH
Q 044320           81 VKG-THTQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------------LKRFMSL  119 (176)
Q Consensus        81 ~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------------~~~l~~l  119 (176)
                      +|+ .....++.++||||||+++|++.++..++                                        +..+.++
T Consensus       216 aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  295 (326)
T 2w1i_A          216 APESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMI  295 (326)
T ss_dssp             CHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHH
T ss_pred             CchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCCCCcccHHHHHH
Confidence            333 33556788999999999999998864322                                        1357889


Q ss_pred             HHhhcccCCCCCCCHHHHHHHHHhhhhc
Q 044320          120 ALKYCEDETKARPSMLEVARQLENISSM  147 (176)
Q Consensus       120 ~~~~~~~~p~~Rp~~~~i~~~l~~~~~~  147 (176)
                      +.+||..+|.+||++.++++.|+.+...
T Consensus       296 i~~cl~~dP~~Rps~~el~~~L~~l~~~  323 (326)
T 2w1i_A          296 MTECWNNNVNQRPSFRDLALRVDQIRDQ  323 (326)
T ss_dssp             HHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999998765

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.94  E-value=2.6e-27  Score=176.19  Aligned_cols=131  Identities=18%  Similarity=0.326  Sum_probs=106.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe---CCCCCeEEeecCCcccCCCCC-CCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL---DSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~---~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~   81 (176)
                      +..+++.+++.++.|++.||.|||+.+   ++||||||+||++   +.++.++|+|||++....... .....+...+.+
T Consensus       118 ~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~a  194 (285)
T 3is5_A          118 GKALSEGYVAELMKQMMNALAYFHSQH---VVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMA  194 (285)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----------CTTGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC---EEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccCcCcccccCcCC
Confidence            467999999999999999999999999   9999999999999   456789999999997654332 223345556666


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+.....++.++||||+|+++|++.++..||                          +..+.+++.+||..+|++||++.
T Consensus       195 PE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~  274 (285)
T 3is5_A          195 PEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSAA  274 (285)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHTCSCTTTSCCHH
T ss_pred             hHHhccCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccccCcCCHHHHHHHHHHccCChhhCcCHH
Confidence            6666678899999999999999998877664                          24578999999999999999999


Q ss_pred             HHHH
Q 044320          136 EVAR  139 (176)
Q Consensus       136 ~i~~  139 (176)
                      ++++
T Consensus       275 e~l~  278 (285)
T 3is5_A          275 QVLH  278 (285)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9875

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.94  E-value=9.1e-28  Score=178.44  Aligned_cols=140  Identities=22%  Similarity=0.286  Sum_probs=115.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCC---ccccceeee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNING---VVGHVSIVV   81 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~---~~~~~~~~~   81 (176)
                      ....+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++++|||++..........   ..+...+.+
T Consensus       104 ~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~a  180 (288)
T 3kfa_A          104 NRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA  180 (288)
T ss_dssp             CTTTSCHHHHHHHHHHHHHHHHHHHHHT---CCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCC
T ss_pred             ccCCccHhHHHHHHHHHHHHHHHHHHCC---ccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccCCccccCcCC
Confidence            3456999999999999999999999999   9999999999999999999999999998765443221   122223333


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+ .....++.++||||+|+++|++.+ +..+|                        +..+.+++.+|+..+|.+||++.
T Consensus       181 PE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  260 (288)
T 3kfa_A          181 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFA  260 (288)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHhCCChhhCcCHH
Confidence            33 335678999999999999999988 65554                        24588999999999999999999


Q ss_pred             HHHHHHHhhhhc
Q 044320          136 EVARQLENISSM  147 (176)
Q Consensus       136 ~i~~~l~~~~~~  147 (176)
                      ++++.|+.+...
T Consensus       261 ~~~~~l~~~~~~  272 (288)
T 3kfa_A          261 EIHQAFETMFQE  272 (288)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987764

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.94  E-value=2.4e-27  Score=183.85  Aligned_cols=131  Identities=22%  Similarity=0.288  Sum_probs=105.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~   81 (176)
                      +..+++.++..++.|++.||.|||+++   |+||||||+||+++ ++.+||+|||+++......    .....|...+.+
T Consensus       149 ~~~~~~~~~~~i~~qi~~aL~~lH~~~---ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~a  224 (390)
T 2zmd_A          149 KKSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMP  224 (390)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCCGGGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccC
Confidence            347899999999999999999999999   99999999999995 5789999999998764332    122345566666


Q ss_pred             cCCCC------------CCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhh
Q 044320           82 KGTHT------------QQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKY  123 (176)
Q Consensus        82 ~~~~~------------~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~  123 (176)
                      |+...            ..++.++|||||||++|+|+++..||.                          ..+.+++.+|
T Consensus       225 PE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  304 (390)
T 2zmd_A          225 PEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCC  304 (390)
T ss_dssp             HHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHH
T ss_pred             hHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccCCCCccchHHHHHHHHHH
Confidence            55431            368899999999999999998887763                          2478999999


Q ss_pred             cccCCCCCCCHHHHHHH
Q 044320          124 CEDETKARPSMLEVARQ  140 (176)
Q Consensus       124 ~~~~p~~Rp~~~~i~~~  140 (176)
                      |..+|.+||++.++++.
T Consensus       305 L~~dP~~Rps~~ell~h  321 (390)
T 2zmd_A          305 LKRDPKQRISIPELLAH  321 (390)
T ss_dssp             TCSSTTTSCCHHHHHTS
T ss_pred             cccChhhCCCHHHHhhC
Confidence            99999999999999864

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.94  E-value=4.7e-27  Score=177.68  Aligned_cols=130  Identities=19%  Similarity=0.233  Sum_probs=108.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecC-C
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKG-T   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~-~   84 (176)
                      ...+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++....... ...|+..+.+|+ .
T Consensus       100 ~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~-~~~gt~~y~aPE~~  175 (318)
T 1fot_A          100 SQRFPNPVAKFYAAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTY-TLCGTPDYIAPEVV  175 (318)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTSCEEECCCSSCEECSSCBC-CCCSCTTTCCHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChheEEEcCCCCEEEeecCcceecCCccc-cccCCccccCHhHh
Confidence            456999999999999999999999999   99999999999999999999999999987554332 233444444444 3


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCC-----CHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARP-----SMLE  136 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp-----~~~~  136 (176)
                      ....++.++|+||+|+++|+|.++..||                       ...+.+++.+|+..+|.+||     ++++
T Consensus       176 ~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~  255 (318)
T 1fot_A          176 STKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTED  255 (318)
T ss_dssp             TTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHH
T ss_pred             cCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHH
Confidence            4667899999999999999999887775                       23588999999999999999     7888


Q ss_pred             HHH
Q 044320          137 VAR  139 (176)
Q Consensus       137 i~~  139 (176)
                      +++
T Consensus       256 i~~  258 (318)
T 1fot_A          256 VKN  258 (318)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            864

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.94  E-value=2.8e-27  Score=185.03  Aligned_cols=132  Identities=19%  Similarity=0.167  Sum_probs=108.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-CCeEEeecCCcccCCCCC-CCCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEISRLAPVPN-INGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~   82 (176)
                      .+..+++..++.++.|++.||.|||+++   |+||||||+||+++.+ +.+||+|||+++...... .....+..+|.+|
T Consensus       149 ~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aP  225 (420)
T 1j1b_A          149 AKQTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAP  225 (420)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCTTSCCH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChhhEEEeCCCCeEEeccchhhhhcccCCCceeeeeCCCcCCH
Confidence            4567999999999999999999999999   9999999999999865 568999999998654332 2223455556655


Q ss_pred             CCC-C-CCCCcccchhhHhHHHHHHhccChHH------------------------------------------------
Q 044320           83 GTH-T-QQLTEKSDIYGLGIACLYMGLYSFEY------------------------------------------------  112 (176)
Q Consensus        83 ~~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------------------------  112 (176)
                      +.. + ..++.++||||+||++|||+++..+|                                                
T Consensus       226 E~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  305 (420)
T 1j1b_A          226 ELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVF  305 (420)
T ss_dssp             HHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHS
T ss_pred             HHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhc
Confidence            543 3 46899999999999999998877654                                                


Q ss_pred             ----HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ----LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ----~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                          +..+.+++.+||..+|.+||++.++++
T Consensus       306 ~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~  336 (420)
T 1j1b_A          306 RPRTPPEAIALCSRLLEYTPTARLTPLEACA  336 (420)
T ss_dssp             CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence                235778999999999999999999985

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.94  E-value=2.5e-27  Score=177.92  Aligned_cols=142  Identities=18%  Similarity=0.236  Sum_probs=109.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~   82 (176)
                      .+..+++.+++.++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++........  ....+...+.+|
T Consensus       129 ~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  205 (310)
T 2wqm_A          129 QKRLIPERTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSP  205 (310)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCC------------------CCSSCCH
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCccccccCCCeeEeCh
Confidence            3567999999999999999999999999   99999999999999999999999999876543321  122233344444


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      + .....++.++||||||+++|++.++..+|                           +..+.+++.+||..+|.+||++
T Consensus       206 E~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  285 (310)
T 2wqm_A          206 ERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDV  285 (310)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCSCCCCTTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccCCCCcccccCHHHHHHHHHHcCCChhhCCCH
Confidence            3 34667889999999999999998876654                           2358899999999999999999


Q ss_pred             HHHHHHHHhhhhcCC
Q 044320          135 LEVARQLENISSMLP  149 (176)
Q Consensus       135 ~~i~~~l~~~~~~~~  149 (176)
                      .++++.|+++.....
T Consensus       286 ~~il~~l~~l~~~~~  300 (310)
T 2wqm_A          286 TYVYDVAKRMHACTA  300 (310)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999987643

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.94  E-value=2.3e-27  Score=181.39  Aligned_cols=131  Identities=22%  Similarity=0.329  Sum_probs=110.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      +..+++.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++.......  ...+...+.+|+..
T Consensus       148 ~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~--~~~gt~~y~aPE~~  222 (348)
T 1u5q_A          148 KKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPAN--SFVGTPYWMAPEVI  222 (348)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBC--CCCSCGGGCCHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEeeccCceecCCCC--cccCCcceeCHhhh
Confidence            567999999999999999999999999   9999999999999999999999999997655332  23345555555542


Q ss_pred             ----CCCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           86 ----TQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        86 ----~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                          ...++.++||||||+++|+|.++..||.                         ..+.+++.+||..+|.+||++.+
T Consensus       223 ~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~  302 (348)
T 1u5q_A          223 LAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEV  302 (348)
T ss_dssp             HTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHH
Confidence                5678899999999999999988877652                         34789999999999999999999


Q ss_pred             HHHHH
Q 044320          137 VARQL  141 (176)
Q Consensus       137 i~~~l  141 (176)
                      +++.-
T Consensus       303 ll~h~  307 (348)
T 1u5q_A          303 LLKHR  307 (348)
T ss_dssp             HTTCH
T ss_pred             HhhCh
Confidence            87653

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.94  E-value=2e-27  Score=179.91  Aligned_cols=138  Identities=17%  Similarity=0.231  Sum_probs=108.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      +..+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||++........  ....+...+.+|+
T Consensus        94 ~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE  170 (324)
T 3mtl_A           94 GNIINMHNVKLFLFQLLRGLAYCHRQK---VLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPD  170 (324)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCCGGGEEECTTCCEEECSSSEEECC------------CGGGCCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCcCHHHEEECCCCCEEEccCcccccccCCccccccccCcccccChh
Confidence            456999999999999999999999999   99999999999999999999999999876543321  2223445555555


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHH-------------------------------------------------
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------------  112 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------------  112 (176)
                      ..  ...++.++||||+|+++|+|.++..||                                                 
T Consensus       171 ~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (324)
T 3mtl_A          171 ILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSH  250 (324)
T ss_dssp             HHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHH
T ss_pred             hhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhh
Confidence            43  356899999999999999998887654                                                 


Q ss_pred             ----HHHHHHHHHhhcccCCCCCCCHHHHHH--HHHhhhh
Q 044320          113 ----LKRFMSLALKYCEDETKARPSMLEVAR--QLENISS  146 (176)
Q Consensus       113 ----~~~l~~l~~~~~~~~p~~Rp~~~~i~~--~l~~~~~  146 (176)
                          ...+.+++.+||..+|.+|||+.++++  .+..+..
T Consensus       251 ~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  290 (324)
T 3mtl_A          251 APRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGE  290 (324)
T ss_dssp             CTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCS
T ss_pred             cCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhccc
Confidence                134678999999999999999999987  3444433

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.94  E-value=5.8e-27  Score=179.24  Aligned_cols=131  Identities=20%  Similarity=0.234  Sum_probs=107.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC---CeEEeecCCcccCCCCCC--CCccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF---TPKVFDFEISRLAPVPNI--NGVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~---~~~l~dfg~~~~~~~~~~--~~~~~~~~~~   80 (176)
                      +..+++.++..++.|++.||.|||+++   ++||||||+||+++.++   .++++|||++........  ....+...+.
T Consensus       124 ~~~~~~~~~~~i~~qi~~al~~lH~~~---ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~  200 (351)
T 3c0i_A          124 GFVYSEAVASHYMRQILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFM  200 (351)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCcc
Confidence            346899999999999999999999999   99999999999997655   499999999977654332  2234555555


Q ss_pred             ecCC-CCCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCCCC
Q 044320           81 VKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        81 ~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      +|+. ....++.++||||+||++|+|+++..||                          +..+.+++.+||..+|++||+
T Consensus       201 aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s  280 (351)
T 3c0i_A          201 APEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERIT  280 (351)
T ss_dssp             CHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCC
T ss_pred             CHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCcC
Confidence            5554 3667899999999999999998876654                          235789999999999999999


Q ss_pred             HHHHHH
Q 044320          134 MLEVAR  139 (176)
Q Consensus       134 ~~~i~~  139 (176)
                      +.++++
T Consensus       281 ~~e~l~  286 (351)
T 3c0i_A          281 VYEALN  286 (351)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999875

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.94  E-value=3e-27  Score=178.85  Aligned_cols=129  Identities=15%  Similarity=0.152  Sum_probs=106.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-CeEEeecCCcccCCCCC-CCCccccceeeecCCC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF-TPKVFDFEISRLAPVPN-INGVVGHVSIVVKGTH   85 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~-~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~~~   85 (176)
                      .+++.++..++.|++.||+|||+++   ++||||||+||+++.++ .++|+|||+++...... .....+...+.+|+..
T Consensus       126 ~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~  202 (330)
T 3nsz_A          126 TLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELL  202 (330)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCccccccccccccChhhh
Confidence            4889999999999999999999999   99999999999998776 89999999997654332 2223344445555443


Q ss_pred             -C-CCCCcccchhhHhHHHHHHhccChHH---------------------------------------------------
Q 044320           86 -T-QQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------------------  112 (176)
Q Consensus        86 -~-~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------------------  112 (176)
                       . ..++.++||||+|+++|+|+++..||                                                   
T Consensus       203 ~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (330)
T 3nsz_A          203 VDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWER  282 (330)
T ss_dssp             TTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGG
T ss_pred             cCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhh
Confidence             3 56899999999999999998887665                                                   


Q ss_pred             ----------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ----------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ----------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                ...+.+++.+||..+|++|||+.++++
T Consensus       283 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~  319 (330)
T 3nsz_A          283 FVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  319 (330)
T ss_dssp             GCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             hccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                      456788999999999999999999886

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.94  E-value=2.3e-27  Score=182.54  Aligned_cols=130  Identities=16%  Similarity=0.203  Sum_probs=99.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC-
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH-   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~-   85 (176)
                      ..+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.+||+|||+++...... ....+..++.+|+.. 
T Consensus       127 ~~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~-~~~~~t~~y~aPE~~~  202 (367)
T 2fst_X          127 QKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHTADEM-TGYVATRWYRAPEIML  202 (367)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECC----------------CCCTTCCHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHhhEEECCCCCEEEeeccccccccccC-CCcCcCcCccChHHHc
Confidence            56999999999999999999999999   9999999999999999999999999997654332 223445555555543 


Q ss_pred             C-CCCCcccchhhHhHHHHHHhccChHHH---------------------------------------------------
Q 044320           86 T-QQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------------------------------  113 (176)
Q Consensus        86 ~-~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------------------------------  113 (176)
                      + ..++.++||||+||++|+|+++..+|.                                                   
T Consensus       203 ~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (367)
T 2fst_X          203 NWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFI  282 (367)
T ss_dssp             TCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTT
T ss_pred             CCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCC
Confidence            3 578999999999999999988876541                                                   


Q ss_pred             ---HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 ---KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 ---~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                         ..+.+++.+||..||.+|||+.++++.
T Consensus       283 ~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h  312 (367)
T 2fst_X          283 GANPLAVDLLEKMLVLDSDKRITAAQALAH  312 (367)
T ss_dssp             TCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence               236789999999999999999999864

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.94  E-value=1.6e-27  Score=179.11  Aligned_cols=138  Identities=20%  Similarity=0.253  Sum_probs=113.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~~   82 (176)
                      ..+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++++|||+++........    ...+...+.+|
T Consensus       143 ~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP  219 (316)
T 2xir_A          143 DFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP  219 (316)
T ss_dssp             TCEEHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHhCC---cccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCc
Confidence            34899999999999999999999999   999999999999999999999999999765433221    12223334444


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHH-------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEY-------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      + .....++.++||||+|+++|++.+ +..||                         +..+.+++.+||..+|.+||++.
T Consensus       220 E~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  299 (316)
T 2xir_A          220 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFS  299 (316)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHhccCccCCCCCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence            3 346678999999999999999987 66554                         23588999999999999999999


Q ss_pred             HHHHHHHhhhhc
Q 044320          136 EVARQLENISSM  147 (176)
Q Consensus       136 ~i~~~l~~~~~~  147 (176)
                      ++++.|+.+...
T Consensus       300 ell~~L~~~~~~  311 (316)
T 2xir_A          300 ELVEHLGNLLQA  311 (316)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999988764

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.94  E-value=2.1e-27  Score=179.16  Aligned_cols=138  Identities=22%  Similarity=0.300  Sum_probs=112.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~~   82 (176)
                      ..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++++|||++.........    ...+...+.+|
T Consensus       133 ~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  209 (322)
T 1p4o_A          133 APPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSP  209 (322)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHCC---CccCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccCh
Confidence            56799999999999999999999999   999999999999999999999999998765432211    11122333333


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      + .....++.++||||+|+++|++.+ +..||                        +..+.+++.+||..+|.+||++.+
T Consensus       210 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e  289 (322)
T 1p4o_A          210 ESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLE  289 (322)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHH
Confidence            3 335678999999999999999988 55554                        235889999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 044320          137 VARQLENISSM  147 (176)
Q Consensus       137 i~~~l~~~~~~  147 (176)
                      +++.|++....
T Consensus       290 ~l~~L~~~~~~  300 (322)
T 1p4o_A          290 IISSIKEEMEP  300 (322)
T ss_dssp             HHHHHGGGSCT
T ss_pred             HHHHHHHhhcc
Confidence            99999987654

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.94  E-value=6e-27  Score=174.34  Aligned_cols=132  Identities=20%  Similarity=0.360  Sum_probs=112.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC-CCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD-SKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~-~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      ..+++.+++.++.|++.||.|||+.+ ++++|+||||+||+++ .++.++|+|||++............+...+.+|+..
T Consensus       124 ~~~~~~~~~~~~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~  202 (290)
T 1t4h_A          124 KVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMY  202 (290)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGG
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHcCC-CCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccccccccCCcCcCCHHHH
Confidence            56899999999999999999999874 3499999999999997 788999999999976655544444556666677766


Q ss_pred             CCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           86 TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        86 ~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      ...++.++||||+|+++|++.++..||.                          ..+.+++.+||..+|.+||++.++++
T Consensus       203 ~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          203 EEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             GTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence            6779999999999999999988876653                          35889999999999999999999875

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.94  E-value=1.1e-27  Score=177.97  Aligned_cols=132  Identities=23%  Similarity=0.363  Sum_probs=101.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcC-CCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-Cccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTE-ADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-GVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~-~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~~   82 (176)
                      .+..+++.+++.++.|++.||.|||++ +   ++||||||+||+++.++.++|+|||++......... ...+...+.+|
T Consensus       102 ~~~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aP  178 (290)
T 3fme_A          102 KGQTIPEDILGKIAVSIVKALEHLHSKLS---VIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAP  178 (290)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHHHSC---CCCCCCSGGGCEECTTCCEEBCCC---------------CCCCCCSCH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeecCCcccccccccccccCCCccccCh
Confidence            456799999999999999999999998 8   999999999999999999999999998765443222 22344445554


Q ss_pred             CC-----CCCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCC
Q 044320           83 GT-----HTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKAR  131 (176)
Q Consensus        83 ~~-----~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~R  131 (176)
                      +.     ....++.++||||+|+++|++.++..||                          +..+.+++.+||..+|++|
T Consensus       179 E~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  258 (290)
T 3fme_A          179 ERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTSQCLKKNSKER  258 (290)
T ss_dssp             HHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             hhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCCcccccCCHHHHHHHHHHhhcChhhC
Confidence            44     3567889999999999999998877654                          2358899999999999999


Q ss_pred             CCHHHHHH
Q 044320          132 PSMLEVAR  139 (176)
Q Consensus       132 p~~~~i~~  139 (176)
                      |++.++++
T Consensus       259 pt~~e~l~  266 (290)
T 3fme_A          259 PTYPELMQ  266 (290)
T ss_dssp             CCHHHHTT
T ss_pred             cCHHHHHh
Confidence            99999987

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.94  E-value=4e-27  Score=177.29  Aligned_cols=139  Identities=19%  Similarity=0.307  Sum_probs=106.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC-------CCCCccccce
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP-------NINGVVGHVS   78 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~-------~~~~~~~~~~   78 (176)
                      +..+++.+++.++.|++.||.|||+++   ++|+||||+||+++ ++.++++|||++......       ......+...
T Consensus       124 ~~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~  199 (319)
T 2y4i_B          124 KIVLDVNKTRQIAQEIVKGMGYLHAKG---ILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLC  199 (319)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHTT---CCCCCCCSTTEEEC---CCEECCCSCCC----------CCSCBCCSGGGG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCChhhEEEe-CCCEEEeecCCccccccccccccccccccCCCccc
Confidence            457999999999999999999999999   99999999999998 679999999987654211       1112224444


Q ss_pred             eeecCCC----------CCCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhh
Q 044320           79 IVVKGTH----------TQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKY  123 (176)
Q Consensus        79 ~~~~~~~----------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~  123 (176)
                      +.+|+..          ...++.++||||||+++|++.++..||.                         ..+.+++.+|
T Consensus       200 y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  279 (319)
T 2y4i_B          200 HLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPNLSQIGMGKEISDILLFC  279 (319)
T ss_dssp             TSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTTCCCCCCCSSCCTTHHHHHHHH
T ss_pred             ccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhccCCCCCCCcCCCCHHHHHHHHHH
Confidence            4444432          2457889999999999999988876642                         3588999999


Q ss_pred             cccCCCCCCCHHHHHHHHHhhhhcC
Q 044320          124 CEDETKARPSMLEVARQLENISSML  148 (176)
Q Consensus       124 ~~~~p~~Rp~~~~i~~~l~~~~~~~  148 (176)
                      |..+|.+||++.++++.|+.+....
T Consensus       280 l~~~p~~Rpt~~~l~~~l~~l~~~~  304 (319)
T 2y4i_B          280 WAFEQEERPTFTKLMDMLEKLPKRN  304 (319)
T ss_dssp             HCSSTTTSCCHHHHHHHHTTC----
T ss_pred             hcCChhhCcCHHHHHHHHHHHHHhh
Confidence            9999999999999999999888764

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.94  E-value=7.4e-27  Score=178.53  Aligned_cols=131  Identities=18%  Similarity=0.199  Sum_probs=105.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      +..+++.++..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++........ ...+...+.+|+..
T Consensus       120 ~~~~~~~~~~~i~~qi~~al~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~-~~~~t~~y~aPE~~  195 (353)
T 3coi_A          120 GLKFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGLARHADAEMT-GYVVTRWYRAPEVI  195 (353)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTCCEEECSTTCTTC---------CCSBCCSCHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEeECCCCcEEEeecccccCCCCCcc-ccccCcCcCCHHHH
Confidence            346999999999999999999999999   99999999999999999999999999976543322 22344445555433


Q ss_pred             -C-CCCCcccchhhHhHHHHHHhccChHH---------------------------------------------------
Q 044320           86 -T-QQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------------------  112 (176)
Q Consensus        86 -~-~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------------------  112 (176)
                       . ..++.++||||+|+++|+|.++..+|                                                   
T Consensus       196 ~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T 3coi_A          196 LSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLF  275 (353)
T ss_dssp             SCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTC
T ss_pred             hCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhc
Confidence             3 57889999999999999998876554                                                   


Q ss_pred             ---HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 ---LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 ---~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                         +..+.+++.+|+..+|.+||++.++++.
T Consensus       276 ~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h  306 (353)
T 3coi_A          276 PRASPQAADLLEKMLELDVDKRLTAAQALTH  306 (353)
T ss_dssp             TTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             CCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence               2357889999999999999999999763

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.94  E-value=1.7e-27  Score=181.13  Aligned_cols=133  Identities=15%  Similarity=0.173  Sum_probs=99.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCCeEEeecCCcccCCCCCCCCccccceeee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS---KFTPKVFDFEISRLAPVPNINGVVGHVSIVV   81 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~---~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~   81 (176)
                      ....+++.+++.++.|++.||.|||+++   ++||||||+||+++.   ++.++|+|||++............+...+.+
T Consensus       121 ~~~~l~~~~~~~i~~ql~~~l~~LH~~~---ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~a  197 (336)
T 3fhr_A          121 GDQAFTEREAAEIMRDIGTAIQFLHSHN---IAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVA  197 (336)
T ss_dssp             -CCCCBHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCCTTCEEC----------------
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEEecCCCceEEEeccccceeccccccccCCCCcCccC
Confidence            3457999999999999999999999999   999999999999976   4569999999998765444333444555555


Q ss_pred             cCCC-CCCCCcccchhhHhHHHHHHhccChHH-------------------------------HHHHHHHHHhhcccCCC
Q 044320           82 KGTH-TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------LKRFMSLALKYCEDETK  129 (176)
Q Consensus        82 ~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------~~~l~~l~~~~~~~~p~  129 (176)
                      |+.. ...++.++||||+|+++|++.++..||                               +..+.+++.+||..+|.
T Consensus       198 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~  277 (336)
T 3fhr_A          198 PEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPT  277 (336)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTTTSTTCCHHHHHHHHHHSCSSGG
T ss_pred             hhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchhhccCCHHHHHHHHHHCCCChh
Confidence            5543 666788999999999999998877665                               23578999999999999


Q ss_pred             CCCCHHHHHHH
Q 044320          130 ARPSMLEVARQ  140 (176)
Q Consensus       130 ~Rp~~~~i~~~  140 (176)
                      +||++.++++.
T Consensus       278 ~Rpt~~ell~h  288 (336)
T 3fhr_A          278 ERLTITQFMNH  288 (336)
T ss_dssp             GSCCHHHHHHS
T ss_pred             HCcCHHHHhcC
Confidence            99999999873

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.94  E-value=1.5e-26  Score=175.66  Aligned_cols=139  Identities=22%  Similarity=0.293  Sum_probs=111.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHh--------cCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC------CCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLH--------TEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN------ING   72 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh--------~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~------~~~   72 (176)
                      ..+++.+++.++.|++.||.|||        +.+   ++||||||+||+++.++.++|+|||++.......      ...
T Consensus       134 ~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~  210 (342)
T 1b6c_B          134 YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA---IAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNH  210 (342)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE---EECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCS
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCC---eeeCCCCHHHEEECCCCCEEEEECCCceecccccccccccccc
Confidence            46899999999999999999999        888   9999999999999999999999999987644322      122


Q ss_pred             ccccceeeecCCCCCC-------CCcccchhhHhHHHHHHhcc----------ChHH-----------------------
Q 044320           73 VVGHVSIVVKGTHTQQ-------LTEKSDIYGLGIACLYMGLY----------SFEY-----------------------  112 (176)
Q Consensus        73 ~~~~~~~~~~~~~~~~-------~~~~~Dv~s~G~~l~~l~~~----------~~~~-----------------------  112 (176)
                      ..+...+.+|+.....       ++.++||||||+++|+|.++          ..||                       
T Consensus       211 ~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  290 (342)
T 1b6c_B          211 RVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLR  290 (342)
T ss_dssp             CCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCC
T ss_pred             CCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHHhC
Confidence            3345555555544222       23689999999999999887          2232                       


Q ss_pred             ------------HHHHHHHHHhhcccCCCCCCCHHHHHHHHHhhhhcC
Q 044320          113 ------------LKRFMSLALKYCEDETKARPSMLEVARQLENISSML  148 (176)
Q Consensus       113 ------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~~~~~~~  148 (176)
                                  +..+.+++.+||..+|.+||++.++++.|+++....
T Consensus       291 ~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~  338 (342)
T 1b6c_B          291 PNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE  338 (342)
T ss_dssp             CCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             CCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence                        235788999999999999999999999999987753

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.94  E-value=6.5e-27  Score=179.07  Aligned_cols=129  Identities=16%  Similarity=0.160  Sum_probs=108.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC-C
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT-H   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~-~   85 (176)
                      ..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++....... ...|...+.+|+. .
T Consensus       136 ~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~-~~~gt~~y~aPE~~~  211 (350)
T 1rdq_E          136 GRFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW-TLCGTPEALAPEIIL  211 (350)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECSSCBC-CCEECGGGCCHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCccceEEECCCCCEEEcccccceeccCCcc-cccCCccccCHHHhc
Confidence            56999999999999999999999999   99999999999999999999999999987654332 2344555555443 4


Q ss_pred             CCCCCcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCCC-----HHHH
Q 044320           86 TQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARPS-----MLEV  137 (176)
Q Consensus        86 ~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp~-----~~~i  137 (176)
                      ...++.++|+||+||++|+|+++..||                       +..+.+++.+||..+|.+||+     +.++
T Consensus       212 ~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei  291 (350)
T 1rdq_E          212 SKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI  291 (350)
T ss_dssp             TCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHH
T ss_pred             CCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHH
Confidence            677899999999999999998887665                       245889999999999999998     7777


Q ss_pred             HH
Q 044320          138 AR  139 (176)
Q Consensus       138 ~~  139 (176)
                      ++
T Consensus       292 ~~  293 (350)
T 1rdq_E          292 KN  293 (350)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.94  E-value=4.2e-27  Score=179.74  Aligned_cols=125  Identities=19%  Similarity=0.234  Sum_probs=104.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC--CCCCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP--NINGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~~~~~   84 (176)
                      ..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++.....  ......|...+.+|+.
T Consensus       105 ~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~  181 (345)
T 3a8x_A          105 RKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEI  181 (345)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEEeccccccccCCCCcccccCCCccccCccc
Confidence            56999999999999999999999999   999999999999999999999999999764322  2223345555555544


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------------HHHHHHHHhhcccCCCCC
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                       ....++.++|+||+||++|+|+++..||.                                ..+.+++.+||..+|.+|
T Consensus       182 ~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R  261 (345)
T 3a8x_A          182 LRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKER  261 (345)
T ss_dssp             HTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTS
T ss_pred             cCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcCCHhHC
Confidence             46678999999999999999999887762                                246789999999999999


Q ss_pred             CCH
Q 044320          132 PSM  134 (176)
Q Consensus       132 p~~  134 (176)
                      |++
T Consensus       262 ~~~  264 (345)
T 3a8x_A          262 LGC  264 (345)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            995

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.94  E-value=7e-27  Score=175.49  Aligned_cols=132  Identities=17%  Similarity=0.155  Sum_probs=105.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+++   ++|+||||+||+++.++.++|+|||.+........  ....+...+.+|+
T Consensus        96 ~~~~~~~~~~~i~~~l~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE  172 (311)
T 4agu_A           96 QRGVPEHLVKSITWQTLQAVNFCHKHN---CIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPE  172 (311)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECC------------GGGCCHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCccccChH
Confidence            466999999999999999999999999   99999999999999999999999999976553321  2233444555555


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHHH------------------------------------------------
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------------  113 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------------  113 (176)
                      ..  ...++.++|+||+|+++|++.++..||.                                                
T Consensus       173 ~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (311)
T 4agu_A          173 LLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLEL  252 (311)
T ss_dssp             HHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHH
T ss_pred             HHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhh
Confidence            43  3567999999999999999988766541                                                


Q ss_pred             ------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 ------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 ------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                            ..+.+++.+||..+|.+|||+.++++.
T Consensus       253 ~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  285 (311)
T 4agu_A          253 KFPNISYPALGLLKGCLHMDPTERLTCEQLLHH  285 (311)
T ss_dssp             HCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred             hcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence                  236789999999999999999999763

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.94  E-value=3.1e-27  Score=178.55  Aligned_cols=131  Identities=18%  Similarity=0.170  Sum_probs=109.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC-CCCCeEEeecCCcccCCCCCCCCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD-SKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~-~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~   84 (176)
                      +..+++.+++.++.|++.||+|||+.+   ++||||||+||+++ .++.++|+|||++............+...+.+|+.
T Consensus       143 ~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~  219 (320)
T 3a99_A          143 RGALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEW  219 (320)
T ss_dssp             HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---cEeCCCCHHHEEEeCCCCCEEEeeCccccccccccccCCCCCccCCChHH
Confidence            356899999999999999999999999   99999999999998 67899999999998766554444445555555554


Q ss_pred             C-CCC-CCcccchhhHhHHHHHHhccChHH-----------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           85 H-TQQ-LTEKSDIYGLGIACLYMGLYSFEY-----------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        85 ~-~~~-~~~~~Dv~s~G~~l~~l~~~~~~~-----------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      . ... .+.++||||||+++|++.++..||                 +..+.+++.+||..+|.+||++.++++
T Consensus       220 ~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  293 (320)
T 3a99_A          220 IRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN  293 (320)
T ss_dssp             HHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hccCCCCCccchHHhHHHHHHHHHHCCCCCCChhhhhcccccccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            3 333 367899999999999999887765                 246899999999999999999999876

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.94  E-value=9.9e-27  Score=172.71  Aligned_cols=130  Identities=22%  Similarity=0.223  Sum_probs=109.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC-C
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT-H   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~-~   85 (176)
                      ..+++.+++.++.|++.||.|||+++   ++|+||+|+||+++.++.++++|||++............+...+.+|+. .
T Consensus       109 ~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~  185 (284)
T 2vgo_A          109 GRFDEQRSATFMEELADALHYCHERK---VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIE  185 (284)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTCCEEECCCTTCEECSSSCBCCCCSCGGGCCHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEEcCCCCEEEecccccccCcccccccccCCCCcCCHHHhc
Confidence            46899999999999999999999999   9999999999999999999999999987655433333344444544443 4


Q ss_pred             CCCCCcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           86 TQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        86 ~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      ...++.++|+||+|+++|++.++..||                       +..+.+++.+|+..+|.+||++.++++
T Consensus       186 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~  262 (284)
T 2vgo_A          186 GKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVME  262 (284)
T ss_dssp             TCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhccccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence            567889999999999999998887665                       245789999999999999999999986

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.94  E-value=6e-27  Score=172.25  Aligned_cols=137  Identities=15%  Similarity=0.232  Sum_probs=110.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      +..+++.+++.++.|++.||.|||++ .++++|+||||+||+++.++.++++|||+.........   .+...+.+|+..
T Consensus       105 ~~~~~~~~~~~i~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~~~~---~~t~~y~aPE~~  180 (271)
T 3kmu_A          105 NFVVDQSQAVKFALDMARGMAFLHTL-EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGR---MYAPAWVAPEAL  180 (271)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHTTS-SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSCTTC---BSCGGGSCHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhcC-CCceecCCCccceEEEcCCcceeEEeccceeeecccCc---cCCccccChhhh
Confidence            34699999999999999999999987 35599999999999999999999999887755433322   233344444433


Q ss_pred             -CCC---CCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           86 -TQQ---LTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        86 -~~~---~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                       ...   ++.++||||||+++|++.++..||.                         ..+.+++.+||..+|++||++.+
T Consensus       181 ~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~  260 (271)
T 3kmu_A          181 QKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDM  260 (271)
T ss_dssp             HSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence             222   3347999999999999988877753                         35889999999999999999999


Q ss_pred             HHHHHHhhhh
Q 044320          137 VARQLENISS  146 (176)
Q Consensus       137 i~~~l~~~~~  146 (176)
                      +++.|+++.+
T Consensus       261 il~~L~~l~~  270 (271)
T 3kmu_A          261 IVPILEKMQD  270 (271)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhhc
Confidence            9999998764

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.94  E-value=6.6e-27  Score=179.72  Aligned_cols=132  Identities=21%  Similarity=0.222  Sum_probs=108.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC---CCeEEeecCCcccCCCCCC-CCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK---FTPKVFDFEISRLAPVPNI-NGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~---~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~   81 (176)
                      +..+++.++..++.|++.||.|||+++   ++||||||+||+++.+   +.+||+|||++........ ....|...+.+
T Consensus       122 ~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~a  198 (362)
T 2bdw_A          122 REFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLS  198 (362)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSCCCSCSCTTTCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcccccCCCCccccC
Confidence            456899999999999999999999999   9999999999999765   4599999999977654332 22345555555


Q ss_pred             cCC-CCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCC
Q 044320           82 KGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        82 ~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      |+. ....++.++||||+||++|+|+++..||                           +..+.+++.+||..+|.+||+
T Consensus       199 PE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t  278 (362)
T 2bdw_A          199 PEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRIT  278 (362)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             HHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhhCcC
Confidence            544 4567899999999999999998887664                           235789999999999999999


Q ss_pred             HHHHHHH
Q 044320          134 MLEVARQ  140 (176)
Q Consensus       134 ~~~i~~~  140 (176)
                      +.++++.
T Consensus       279 ~~e~l~h  285 (362)
T 2bdw_A          279 ADQALKV  285 (362)
T ss_dssp             HHHHTTS
T ss_pred             HHHHhcC
Confidence            9988754

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.94  E-value=1.3e-27  Score=183.22  Aligned_cols=126  Identities=17%  Similarity=0.186  Sum_probs=103.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++......  .....|+..+.+|+
T Consensus       118 ~~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE  194 (353)
T 3txo_A          118 SRRFDEARARFYAAEIISALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPE  194 (353)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---------CCGGGCCHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---CcccCCCHHHEEECCCCCEEEccccceeecccCCccccccCCCcCeEChh
Confidence            356999999999999999999999999   9999999999999999999999999997643222  22334555555555


Q ss_pred             CC-CCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           84 TH-TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        84 ~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      .. ...++.++|+||+||++|+|+++..||.                       ..+.+++.+|+..+|.+||++
T Consensus       195 ~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dP~~R~~~  269 (353)
T 3txo_A          195 ILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDATGILKSFMTKNPTMRLGS  269 (353)
T ss_dssp             HHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred             hcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHHccCC
Confidence            43 5668899999999999999998877762                       358899999999999999998

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.94  E-value=6.4e-27  Score=184.18  Aligned_cols=131  Identities=18%  Similarity=0.243  Sum_probs=109.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~   82 (176)
                      ...+++.++..++.|++.||+|||+ .+   ++||||||+||+++.++.++|+|||+++......  .....|...+.+|
T Consensus       242 ~~~~~~~~~~~~~~qi~~aL~~LH~~~g---iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aP  318 (446)
T 4ejn_A          242 ERVFSEDRARFYGAEIVSALDYLHSEKN---VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAP  318 (446)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHHHHHTC---CCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGGCCH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhhcCC---EEECCCCHHHEEECCCCCEEEccCCCceeccCCCcccccccCCccccCH
Confidence            3568999999999999999999998 88   9999999999999999999999999997643322  2233455555555


Q ss_pred             CC-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCC-----C
Q 044320           83 GT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARP-----S  133 (176)
Q Consensus        83 ~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp-----~  133 (176)
                      +. ....++.++|||||||++|+|+++..||.                       ..+.+++.+||..+|.+||     +
T Consensus       319 E~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t  398 (446)
T 4ejn_A          319 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSED  398 (446)
T ss_dssp             HHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTT
T ss_pred             hhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHcccCHHHhCCCCCCC
Confidence            54 47788999999999999999998877652                       3578999999999999999     9


Q ss_pred             HHHHHH
Q 044320          134 MLEVAR  139 (176)
Q Consensus       134 ~~~i~~  139 (176)
                      +.++++
T Consensus       399 ~~ell~  404 (446)
T 4ejn_A          399 AKEIMQ  404 (446)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            999875

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.94  E-value=1.2e-26  Score=171.60  Aligned_cols=131  Identities=17%  Similarity=0.163  Sum_probs=109.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe---CCCCCeEEeecCCcccCCCCC-CCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL---DSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~---~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~   81 (176)
                      +..+++.+++.++.|++.||.|||+++   ++|+||||+||++   +.++.++++|||++....... .....+...+.+
T Consensus       100 ~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~a  176 (277)
T 3f3z_A          100 KRVFRESDAARIMKDVLSAVAYCHKLN---VAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVS  176 (277)
T ss_dssp             HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCBCCCCSCTTTCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccchhccCCCCCccC
Confidence            356899999999999999999999999   9999999999999   778899999999987654332 223345555666


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      |+.....++.++||||+|+++|++.++..||                           +..+.+++.+|+..+|.+||++
T Consensus       177 PE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~  256 (277)
T 3f3z_A          177 PQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITS  256 (277)
T ss_dssp             HHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             hHHhcccCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHccCChhhCcCH
Confidence            6666666899999999999999998876654                           2358899999999999999999


Q ss_pred             HHHHH
Q 044320          135 LEVAR  139 (176)
Q Consensus       135 ~~i~~  139 (176)
                      .++++
T Consensus       257 ~~~l~  261 (277)
T 3f3z_A          257 LQALE  261 (277)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            99975

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.93  E-value=8.6e-27  Score=180.11  Aligned_cols=139  Identities=17%  Similarity=0.139  Sum_probs=111.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC-CCCCeEEeecCCcccCCCCC-CCCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD-SKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~-~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~   82 (176)
                      .+..+++..+..++.|++.||.|||+.+   ++||||||+||+++ .++.++|+|||+++...... .....+...+.+|
T Consensus       134 ~~~~l~~~~~~~i~~qi~~aL~~LH~~g---i~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aP  210 (383)
T 3eb0_A          134 SGRSIPMNLISIYIYQLFRAVGFIHSLG---ICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAP  210 (383)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHCc---CccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCH
Confidence            4567999999999999999999999999   99999999999997 57899999999998654333 2223344555555


Q ss_pred             CCC-C-CCCCcccchhhHhHHHHHHhccChHHH-----------------------------------------------
Q 044320           83 GTH-T-QQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------------------------------  113 (176)
Q Consensus        83 ~~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------------------------------  113 (176)
                      +.. + ..++.++||||+||++|+|.++..+|.                                               
T Consensus       211 E~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (383)
T 3eb0_A          211 ELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKIL  290 (383)
T ss_dssp             HHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHS
T ss_pred             HHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhC
Confidence            543 3 458999999999999999988776542                                               


Q ss_pred             -----HHHHHHHHhhcccCCCCCCCHHHHHH--HHHhhhh
Q 044320          114 -----KRFMSLALKYCEDETKARPSMLEVAR--QLENISS  146 (176)
Q Consensus       114 -----~~l~~l~~~~~~~~p~~Rp~~~~i~~--~l~~~~~  146 (176)
                           ..+.+++.+||..+|.+|||+.++++  .++.+..
T Consensus       291 ~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  330 (383)
T 3eb0_A          291 PEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHLRN  330 (383)
T ss_dssp             CTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHHHH
T ss_pred             CCCCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHHHh
Confidence                 23779999999999999999999974  3444443

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.93  E-value=1.1e-26  Score=177.57  Aligned_cols=133  Identities=19%  Similarity=0.113  Sum_probs=110.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHh--cCCCCCeEecCCCCCCeEeCC-CCCeEEeecCCcccCCCCCC-CCccccceee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLH--TEADPPIIHWDIKATNTLLDS-KFTPKVFDFEISRLAPVPNI-NGVVGHVSIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh--~~~~~~~vH~dl~~~nil~~~-~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~   80 (176)
                      ....+++..+..++.|++.||.|+|  +.+   ++||||||+||+++. ++.++|+|||++........ ....+...+.
T Consensus       122 ~~~~~~~~~~~~~~~qi~~al~~lH~~~~~---ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~  198 (360)
T 3e3p_A          122 RQVAPPPILIKVFLFQLIRSIGCLHLPSVN---VCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYR  198 (360)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHTSTTTC---CBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSCCCSTTSCGGGC
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHhCCCCC---eecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCCcccccCCccee
Confidence            4567899999999999999999999  888   999999999999986 89999999999987654332 2334455555


Q ss_pred             ecCCC--CCCCCcccchhhHhHHHHHHhccChHH----------------------------------------------
Q 044320           81 VKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------------------  112 (176)
Q Consensus        81 ~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------------------  112 (176)
                      +|+..  ...++.++||||||+++|++.++..||                                              
T Consensus       199 aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (360)
T 3e3p_A          199 APELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSN  278 (360)
T ss_dssp             CHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHH
T ss_pred             CHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCccc
Confidence            55543  344899999999999999998887654                                              


Q ss_pred             ---------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 ---------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 ---------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                               ...+.+++.+||..+|.+||++.++++.
T Consensus       279 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  315 (360)
T 3e3p_A          279 VFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCH  315 (360)
T ss_dssp             HTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             ccchhhccccHHHHHHHHHHhccCccccCCHHHHhcC
Confidence                     2467889999999999999999999864

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=6.9e-27  Score=178.35  Aligned_cols=132  Identities=19%  Similarity=0.130  Sum_probs=108.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++......  .....+...+.+|+
T Consensus       106 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE  182 (346)
T 1ua2_A          106 SLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPE  182 (346)
T ss_dssp             CSSCCSSHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHH
T ss_pred             CcCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEEcCCCCEEEEecccceeccCCcccCCcccccccccCch
Confidence            456899999999999999999999999   9999999999999999999999999998764332  22233445555555


Q ss_pred             CC--CCCCCcccchhhHhHHHHHHhccChHH-------------------------------------------------
Q 044320           84 TH--TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------------  112 (176)
Q Consensus        84 ~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------------  112 (176)
                      ..  ...++.++||||+|+++|+|+++..+|                                                 
T Consensus       183 ~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (346)
T 1ua2_A          183 LLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFS  262 (346)
T ss_dssp             HHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCT
T ss_pred             HhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhc
Confidence            43  345788999999999999998765442                                                 


Q ss_pred             --HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 --LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 --~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                        ...+.+++.+||..+|.+|||+.++++.
T Consensus       263 ~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  292 (346)
T 1ua2_A          263 AAGDDLLDLIQGLFLFNPCARITATQALKM  292 (346)
T ss_dssp             TCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             cCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence              1457889999999999999999998875

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.93  E-value=6e-27  Score=177.31  Aligned_cols=132  Identities=23%  Similarity=0.307  Sum_probs=107.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~   81 (176)
                      +..+++.+++.++.|++.||+|||+.+   ++||||||+||+++.++.++|+|||++.......    .....|...+.+
T Consensus        99 ~~~~~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~a  175 (323)
T 3tki_A           99 DIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA  175 (323)
T ss_dssp             TTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccC
Confidence            456999999999999999999999999   9999999999999999999999999997643221    122344555555


Q ss_pred             cCCC-CCCC-CcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCC
Q 044320           82 KGTH-TQQL-TEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        82 ~~~~-~~~~-~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      |+.. ...+ +.++||||+|+++|+|+++..||.                          ..+.+++.+||..+|.+||+
T Consensus       176 PE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t  255 (323)
T 3tki_A          176 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARIT  255 (323)
T ss_dssp             HHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             cHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCccccCCHHHHHHHHHHccCChhhCcC
Confidence            5543 3443 678999999999999988876652                          35778999999999999999


Q ss_pred             HHHHHHH
Q 044320          134 MLEVARQ  140 (176)
Q Consensus       134 ~~~i~~~  140 (176)
                      +.++++.
T Consensus       256 ~~eil~h  262 (323)
T 3tki_A          256 IPDIKKD  262 (323)
T ss_dssp             HHHHTTC
T ss_pred             HHHHhhC
Confidence            9998764

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.93  E-value=1.4e-26  Score=171.27  Aligned_cols=131  Identities=20%  Similarity=0.272  Sum_probs=97.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      ...+++.+++.++.|++.||.|||+++   ++|+||+|+||+++.++.++++|||.+........  ....+...+.+|+
T Consensus       106 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  182 (278)
T 3cok_A          106 VKPFSENEARHFMHQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPE  182 (278)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSSCCGGGEEECTTCCEEECCCTTCEECC-------------------
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCcCCcc
Confidence            467999999999999999999999999   99999999999999999999999999876543221  1223444444444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      . ....++.++|+||+|+++|++.++..||                       +..+.+++.+||..+|++||++.++++
T Consensus       183 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          183 IATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             ---------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----CCSSCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHHhhcccCCccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence            4 3566788999999999999998876654                       346889999999999999999998875

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.93  E-value=1.3e-26  Score=174.35  Aligned_cols=141  Identities=18%  Similarity=0.280  Sum_probs=106.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----CCccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----NGVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~~   80 (176)
                      ...+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++........     ....|...+.
T Consensus       110 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~  186 (311)
T 3ork_A          110 EGPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYL  186 (311)
T ss_dssp             HCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEETTSCEEECCCSCC------------------CCTTC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccC
Confidence            356999999999999999999999999   99999999999999999999999999876543221     1122344444


Q ss_pred             ecCC-CCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           81 VKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        81 ~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +|+. ....++.++||||||+++|+|.++..||                           +..+.+++.+||..+|++||
T Consensus       187 aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~  266 (311)
T 3ork_A          187 SPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRY  266 (311)
T ss_dssp             CHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             CHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhhCh
Confidence            4443 4667899999999999999998887664                           23588999999999999999


Q ss_pred             CHH-HHHHHHHhhhhcCC
Q 044320          133 SML-EVARQLENISSMLP  149 (176)
Q Consensus       133 ~~~-~i~~~l~~~~~~~~  149 (176)
                      +.. ++...+.+.....+
T Consensus       267 ~~~~~l~~~l~~~~~~~~  284 (311)
T 3ork_A          267 QTAAEMRADLVRVHNGEP  284 (311)
T ss_dssp             SSHHHHHHHHHHHHTTCC
T ss_pred             hhHHHHHHHHHHHhcCCC
Confidence            655 55566666655443

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.93  E-value=9.9e-27  Score=175.61  Aligned_cols=131  Identities=19%  Similarity=0.184  Sum_probs=107.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKG-   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~-   83 (176)
                      ...+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++|+|||++....... .....+...+.+|+ 
T Consensus       114 ~~~~~~~~~~~~~~qi~~~l~~lH~~g---i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~  190 (326)
T 1blx_A          114 EPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEV  190 (326)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCCHHHeEEcCCCCEEEecCcccccccCCCCccccccccceeCHHH
Confidence            445999999999999999999999999   9999999999999999999999999987654322 12223344444443 


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHH--------------------------------------------------H
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------------------------------L  113 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------------------------------~  113 (176)
                      .....++.++||||||+++|++.++..+|                                                  +
T Consensus       191 ~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (326)
T 1blx_A          191 LLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDID  270 (326)
T ss_dssp             HTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCC
T ss_pred             HhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCC
Confidence            34667899999999999999998776554                                                  2


Q ss_pred             HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      ..+.+++.+||..+|.+||++.++++
T Consensus       271 ~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          271 ELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            23578999999999999999999985

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.93  E-value=4.6e-27  Score=178.11  Aligned_cols=131  Identities=18%  Similarity=0.221  Sum_probs=98.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC---CeEEeecCCcccCCCCCC--CCccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF---TPKVFDFEISRLAPVPNI--NGVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~---~~~l~dfg~~~~~~~~~~--~~~~~~~~~~   80 (176)
                      +..+++.++..++.|++.||.|||+++   ++||||||+||+++.++   .++|+|||+++.......  ....+...+.
T Consensus       100 ~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~  176 (325)
T 3kn6_A          100 KKHFSETEASYIMRKLVSAVSHMHDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYA  176 (325)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEC----CEEEECCCTTCEECCC---------------
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---CeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCcc
Confidence            457999999999999999999999999   99999999999997655   799999999976543321  2223344455


Q ss_pred             ecCC-CCCCCCcccchhhHhHHHHHHhccChHHH----------------------------------HHHHHHHHhhcc
Q 044320           81 VKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------------KRFMSLALKYCE  125 (176)
Q Consensus        81 ~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------------~~l~~l~~~~~~  125 (176)
                      +|+. ....++.++||||+|+++|++.++..||.                                  ..+.+++.+||.
T Consensus       177 aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  256 (325)
T 3kn6_A          177 APELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLT  256 (325)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHC
T ss_pred             CHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCC
Confidence            5444 46778999999999999999988776652                                  357889999999


Q ss_pred             cCCCCCCCHHHHHH
Q 044320          126 DETKARPSMLEVAR  139 (176)
Q Consensus       126 ~~p~~Rp~~~~i~~  139 (176)
                      .+|.+||++.++++
T Consensus       257 ~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          257 VDPNKRLKMSGLRY  270 (325)
T ss_dssp             CCTTTCCCTTTSTT
T ss_pred             CChhHCCCHHHHhc
Confidence            99999999998864

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.93  E-value=9.9e-28  Score=178.30  Aligned_cols=136  Identities=20%  Similarity=0.225  Sum_probs=108.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCC--------eEEeecCCcccCCCCCCCCccccce
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFT--------PKVFDFEISRLAPVPNINGVVGHVS   78 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~--------~~l~dfg~~~~~~~~~~~~~~~~~~   78 (176)
                      ..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.        ++++|||++........  ..+...
T Consensus       108 ~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~  182 (289)
T 4fvq_A          108 NCINILWKLEVAKQLAAAMHFLEENT---LIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDI--LQERIP  182 (289)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCHHH--HHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhCC---eECCCcCcceEEEecCCcccccccceeeeccCcccccccCccc--cCCcCc
Confidence            34899999999999999999999999   999999999999988876        99999999865443221  112233


Q ss_pred             eeecCCC-C-CCCCcccchhhHhHHHHHHhccCh-HH----------------------HHHHHHHHHhhcccCCCCCCC
Q 044320           79 IVVKGTH-T-QQLTEKSDIYGLGIACLYMGLYSF-EY----------------------LKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        79 ~~~~~~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~-~~----------------------~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      +.+|+.. . ..++.++||||+|+++|+|.++.. ++                      +..+.+++.+||..+|.+||+
T Consensus       183 y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps  262 (289)
T 4fvq_A          183 WVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPKAAELANLINNCMDYEPDHRPS  262 (289)
T ss_dssp             TSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCSSCTTHHHHHHHSCSSGGGSCC
T ss_pred             ccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhccCCCCCCCCHHHHHHHHHHcCCChhHCcC
Confidence            4444433 3 568899999999999999998533 22                      124788999999999999999


Q ss_pred             HHHHHHHHHhhhhc
Q 044320          134 MLEVARQLENISSM  147 (176)
Q Consensus       134 ~~~i~~~l~~~~~~  147 (176)
                      +.++++.|+.+.+.
T Consensus       263 ~~~ll~~l~~l~~p  276 (289)
T 4fvq_A          263 FRAIIRDLNSLFTP  276 (289)
T ss_dssp             HHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999988774

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.93  E-value=2.6e-26  Score=182.43  Aligned_cols=131  Identities=19%  Similarity=0.245  Sum_probs=111.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC---CCCCeEEeecCCcccCCCCC-CCCccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD---SKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~---~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~   82 (176)
                      ..+++.++..++.|++.||.|||+++   ++||||||+||+++   .++.+||+|||++....... .....|...+.+|
T Consensus       116 ~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aP  192 (486)
T 3mwu_A          116 KRFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAP  192 (486)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC----CCTTGGGGCCG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCccCCCcCCCCCCCH
Confidence            56899999999999999999999999   99999999999995   45679999999997655433 2234566777777


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      +.....++.++||||+||++|+|+++..||                           +..+.+++.+||..+|.+|||+.
T Consensus       193 E~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~  272 (486)
T 3mwu_A          193 EVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITAT  272 (486)
T ss_dssp             GGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             HHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence            777778999999999999999998887765                           23578999999999999999999


Q ss_pred             HHHHH
Q 044320          136 EVARQ  140 (176)
Q Consensus       136 ~i~~~  140 (176)
                      ++++.
T Consensus       273 ~~l~h  277 (486)
T 3mwu_A          273 QCLEH  277 (486)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            99875

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.93  E-value=1e-26  Score=179.85  Aligned_cols=132  Identities=17%  Similarity=0.165  Sum_probs=106.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC---------CCCCcccc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP---------NINGVVGH   76 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~---------~~~~~~~~   76 (176)
                      ...+++.++..++.|++.||+|||+++   ++||||||+||+++.++.++++|||.+......         ......+.
T Consensus       122 ~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt  198 (389)
T 3gni_B          122 MDGMNELAIAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKV  198 (389)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTT
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEcccccceeecccccccccccccccccccc
Confidence            466999999999999999999999999   999999999999999999999999987543211         11122344


Q ss_pred             ceeeecCCC-C--CCCCcccchhhHhHHHHHHhccChHHH----------------------------------------
Q 044320           77 VSIVVKGTH-T--QQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------------------  113 (176)
Q Consensus        77 ~~~~~~~~~-~--~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------------------  113 (176)
                      ..+.+|+.. .  ..++.++||||+||++|+|.++..||.                                        
T Consensus       199 ~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (389)
T 3gni_B          199 LPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVAN  278 (389)
T ss_dssp             GGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC-----------------------------
T ss_pred             ccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCccccccccccccccccccccccc
Confidence            444444443 3  578999999999999999988877652                                        


Q ss_pred             -----------------------------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 -----------------------------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 -----------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                                   ..+.+++.+||..+|++|||+.++++.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h  334 (389)
T 3gni_B          279 SGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  334 (389)
T ss_dssp             ---------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             cccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence                                         236779999999999999999999854

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.93  E-value=6.7e-27  Score=181.56  Aligned_cols=138  Identities=14%  Similarity=0.147  Sum_probs=112.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe----CCCCCeEEeecCCcccCCCCCC-CCccccceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL----DSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~----~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~   81 (176)
                      ..+++.+++.++.|++.||+|||+++   ++||||||+||++    +.++.+||+|||+++....... ....+...+.+
T Consensus       107 ~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~a  183 (396)
T 4eut_A          107 YGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLH  183 (396)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGSSCSSSCCTTCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCccccccCCccccC
Confidence            34999999999999999999999999   9999999999998    7777899999999977554332 22334444555


Q ss_pred             cCCC---------CCCCCcccchhhHhHHHHHHhccChHH----------------------------------------
Q 044320           82 KGTH---------TQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------------  112 (176)
Q Consensus        82 ~~~~---------~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------------  112 (176)
                      |+..         ...++.++||||||+++|++.++..||                                        
T Consensus       184 PE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  263 (396)
T 4eut_A          184 PDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSG  263 (396)
T ss_dssp             HHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEES
T ss_pred             HHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCc
Confidence            4432         145678999999999999998876654                                        


Q ss_pred             ------------HHHHHHHHHhhcccCCCCCCCHHHHHHHHHhhhhc
Q 044320          113 ------------LKRFMSLALKYCEDETKARPSMLEVARQLENISSM  147 (176)
Q Consensus       113 ------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~~~~~~  147 (176)
                                  ...+.+++.+||..||++||++.++++.++.+...
T Consensus       264 ~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          264 DMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (396)
T ss_dssp             SCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred             cCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence                        23577899999999999999999999999988775

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.93  E-value=3.9e-27  Score=180.00  Aligned_cols=129  Identities=20%  Similarity=0.273  Sum_probs=107.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC--CCCCCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV--PNINGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~--~~~~~~~~~~~~~~~~~   84 (176)
                      ..+++.++..++.|++.||+|||+++   ++||||||+||+++.++.++|+|||+++....  .......|+..+.+|+.
T Consensus       113 ~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~  189 (345)
T 1xjd_A          113 HKFDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEI  189 (345)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCChhhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcccCChhh
Confidence            56999999999999999999999999   99999999999999999999999999976432  22233445555555554


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHH-HHH
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSML-EVA  138 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~-~i~  138 (176)
                       .+..++.++|+||+||++|+|.++..||.                       ..+.+++.+||..+|.+||++. +++
T Consensus       190 ~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          190 LLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             HTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             hcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence             46678999999999999999988887652                       3578999999999999999987 553

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.93  E-value=9e-27  Score=176.48  Aligned_cols=133  Identities=20%  Similarity=0.289  Sum_probs=107.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCCeEEeecCCcccCCCCCC-CCccccceee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS---KFTPKVFDFEISRLAPVPNI-NGVVGHVSIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~---~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~   80 (176)
                      ....+++.+++.++.|++.||+|||+++   ++||||||+||+++.   ++.++|+|||+++....... ....+...+.
T Consensus       124 ~~~~~~~~~~~~i~~ql~~~L~~LH~~g---ivH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~  200 (327)
T 3lm5_A          124 LAEMVSENDVIRLIKQILEGVYYLHQNN---IVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYL  200 (327)
T ss_dssp             C-CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---------CCCGGGC
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCChHHEEEecCCCCCcEEEeeCccccccCCccccccccCCcCcc
Confidence            3567999999999999999999999999   999999999999987   78999999999987654322 2233444454


Q ss_pred             ecCC-CCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           81 VKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        81 ~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +|+. ....++.++||||+|+++|+|.++..||                           +..+.+++.+||..+|.+||
T Consensus       201 aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp  280 (327)
T 3lm5_A          201 APEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRP  280 (327)
T ss_dssp             CHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSC
T ss_pred             CCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccCchhhcccCHHHHHHHHHHcCCChhhCc
Confidence            4443 4677899999999999999998887665                           23478999999999999999


Q ss_pred             CHHHHHHH
Q 044320          133 SMLEVARQ  140 (176)
Q Consensus       133 ~~~~i~~~  140 (176)
                      ++.++++.
T Consensus       281 t~~~ll~h  288 (327)
T 3lm5_A          281 TAEICLSH  288 (327)
T ss_dssp             CHHHHTTC
T ss_pred             CHHHHhCC
Confidence            99998764

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.93  E-value=1.5e-26  Score=177.20  Aligned_cols=130  Identities=17%  Similarity=0.203  Sum_probs=107.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC--CCCCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP--NINGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~~~~~   84 (176)
                      ..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++.....  ......|...+.+|+.
T Consensus       116 ~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~  192 (353)
T 2i0e_A          116 GRFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEI  192 (353)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEEcCCCcEEEEeCCcccccccCCcccccccCCccccChhh
Confidence            56999999999999999999999999   999999999999999999999999999764322  2223345555555544


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCC-----HH
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPS-----ML  135 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~-----~~  135 (176)
                       ....++.++|+||+||++|||+++..||.                       ..+.+++.+||..+|.+||+     +.
T Consensus       193 ~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~  272 (353)
T 2i0e_A          193 IAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGER  272 (353)
T ss_dssp             HTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHH
T ss_pred             hcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHH
Confidence             46778999999999999999988877652                       35789999999999999996     45


Q ss_pred             HHHH
Q 044320          136 EVAR  139 (176)
Q Consensus       136 ~i~~  139 (176)
                      ++++
T Consensus       273 ~i~~  276 (353)
T 2i0e_A          273 DIKE  276 (353)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            6654

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.93  E-value=3.9e-27  Score=178.62  Aligned_cols=131  Identities=20%  Similarity=0.238  Sum_probs=103.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||++.......  .....+...+.+|+
T Consensus       118 ~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE  194 (331)
T 4aaa_A          118 PNGLDYQVVQKYLFQIINGIGFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPE  194 (331)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCTTC------------CCCCCTTCCHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHCC---EEccCcChheEEEcCCCcEEEEeCCCceeecCCccccCCCcCCccccCcc
Confidence            456999999999999999999999999   9999999999999999999999999997654322  12223444455554


Q ss_pred             CC-C-CCCCcccchhhHhHHHHHHhccChHH-------------------------------------------------
Q 044320           84 TH-T-QQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------------  112 (176)
Q Consensus        84 ~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------------  112 (176)
                      .. + ..++.++||||+|+++|++.++..+|                                                 
T Consensus       195 ~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (331)
T 4aaa_A          195 LLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLER  274 (331)
T ss_dssp             HHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHH
T ss_pred             cccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhh
Confidence            43 2 36789999999999999998876554                                                 


Q ss_pred             -----HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 -----LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 -----~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                           +..+.+++.+||..+|++||++.++++
T Consensus       275 ~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          275 RYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             HSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             cccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence                 345789999999999999999998865

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.93  E-value=2.2e-26  Score=170.61  Aligned_cols=131  Identities=21%  Similarity=0.211  Sum_probs=107.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCC---eEEeecCCcccCCCCCC-CCccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFT---PKVFDFEISRLAPVPNI-NGVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~---~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~   82 (176)
                      ..+++.++..++.|++.||.|||+.+   ++|+||||+||+++.++.   ++++|||.+........ ....+...+.+|
T Consensus       100 ~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aP  176 (284)
T 3kk8_A          100 EFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSP  176 (284)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBCCCSCSCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---cCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccccCCCCCcCCcCc
Confidence            46899999999999999999999999   999999999999976654   99999999976654432 223344444444


Q ss_pred             CC-CCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           83 GT-HTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        83 ~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +. ....++.++||||+|+++|++.++..||                           +..+.+++.+||..+|++||++
T Consensus       177 E~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~  256 (284)
T 3kk8_A          177 EVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITA  256 (284)
T ss_dssp             HHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             hhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCchhhcccCHHHHHHHHHHcccChhhCCCH
Confidence            43 4667899999999999999998877664                           3458899999999999999999


Q ss_pred             HHHHHH
Q 044320          135 LEVARQ  140 (176)
Q Consensus       135 ~~i~~~  140 (176)
                      .++++.
T Consensus       257 ~~~l~h  262 (284)
T 3kk8_A          257 DQALKV  262 (284)
T ss_dssp             HHHTTS
T ss_pred             HHHhcC
Confidence            999873

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.93  E-value=8e-27  Score=179.93  Aligned_cols=128  Identities=20%  Similarity=0.178  Sum_probs=106.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC--CCCCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV--PNINGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~--~~~~~~~~~~~~~~~~   83 (176)
                      ...+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++....  .......|+..+.+|+
T Consensus       133 ~~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE  209 (373)
T 2r5t_A          133 ERCFLEPRARFYAAEIASALGYLHSLN---IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPE  209 (373)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEeeCccccccccCCCccccccCCccccCHH
Confidence            356899999999999999999999999   99999999999999999999999999875322  1222334555555554


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      . ....++.++|+||+||++|||+++..||.                       ..+.+++.+||..+|.+||++.+
T Consensus       210 ~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~~  286 (373)
T 2r5t_A          210 VLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKD  286 (373)
T ss_dssp             HHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHSCCCCCSSSCHHHHHHHHHHTCSSGGGSTTTTT
T ss_pred             HhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHHcccCHHhCCCCCC
Confidence            4 46778999999999999999998887762                       35789999999999999999753

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.93  E-value=1.1e-26  Score=178.04  Aligned_cols=133  Identities=19%  Similarity=0.151  Sum_probs=102.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKG   83 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~   83 (176)
                      .+..+++.++..++.|++.||.|||+++   ++|+||||+||+++.++.++|+|||++....... .....+...+.+|+
T Consensus       127 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE  203 (362)
T 3pg1_A          127 QRIVISPQHIQYFMYHILLGLHVLHEAG---VVHRDLHPGNILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPE  203 (362)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCTTC---------------CGGGCCHH
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHCc---CEecCCChHHEEEcCCCCEEEEecCcccccccccccceecccceecCcH
Confidence            3457999999999999999999999999   9999999999999999999999999997544332 22233444555555


Q ss_pred             CC-C-CCCCcccchhhHhHHHHHHhccChHH-------------------------------------------------
Q 044320           84 TH-T-QQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------------  112 (176)
Q Consensus        84 ~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------------  112 (176)
                      .. . ..++.++||||+|+++|++.++..+|                                                 
T Consensus       204 ~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (362)
T 3pg1_A          204 LVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWT  283 (362)
T ss_dssp             HHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHH
T ss_pred             HhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHH
Confidence            33 3 66899999999999999998876654                                                 


Q ss_pred             ------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 ------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 ------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                            ...+.+++.+||..+|.+|||+.++++.
T Consensus       284 ~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  317 (362)
T 3pg1_A          284 AVVPTADPVALDLIAKMLEFNPQRRISTEQALRH  317 (362)
T ss_dssp             HHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             hhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence                  2237789999999999999999999863

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.93  E-value=1.4e-26  Score=177.06  Aligned_cols=131  Identities=18%  Similarity=0.214  Sum_probs=100.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCCeEEeecCCcccCCCCCC-CCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS---KFTPKVFDFEISRLAPVPNI-NGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~---~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~   81 (176)
                      +..+++.+++.++.|++.||.|||+.+   ++||||||+||+++.   ++.++|+|||+++....... ....+...+.+
T Consensus       142 ~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a  218 (349)
T 2w4o_A          142 KGYYSERDAADAVKQILEAVAYLHENG---IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCA  218 (349)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESSSSTTCCEEECCCC----------------CGGGSC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCcccEEEecCCCCCCEEEccCccccccCcccccccccCCCCccC
Confidence            456899999999999999999999999   999999999999975   78999999999876543321 12234444444


Q ss_pred             cCC-CCCCCCcccchhhHhHHHHHHhccChHH----------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           82 KGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        82 ~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      |+. .+..++.++|||||||++|+|.++..||                            +..+.+++.+||..+|++||
T Consensus       219 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp  298 (349)
T 2w4o_A          219 PEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRL  298 (349)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSC
T ss_pred             HHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHccCChhhCc
Confidence            443 4667899999999999999998876654                            23578899999999999999


Q ss_pred             CHHHHHH
Q 044320          133 SMLEVAR  139 (176)
Q Consensus       133 ~~~~i~~  139 (176)
                      ++.++++
T Consensus       299 t~~e~l~  305 (349)
T 2w4o_A          299 TTFQALQ  305 (349)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHhc
Confidence            9998876

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.93  E-value=4e-27  Score=175.09  Aligned_cols=138  Identities=20%  Similarity=0.252  Sum_probs=110.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Cccccceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVGHVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~~   81 (176)
                      ..+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++++|||++.........     ...+...+.+
T Consensus       116 ~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  192 (291)
T 1u46_A          116 GHFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCA  192 (291)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCC
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeC
Confidence            45899999999999999999999999   999999999999999999999999998775443211     1122222333


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhc-cChHHH-------------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL-------------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      |+ .....++.++||||||+++|++.+ +..||.                         ..+.+++.+||..+|.+||++
T Consensus       193 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~  272 (291)
T 1u46_A          193 PESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTF  272 (291)
T ss_dssp             HHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             chhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccCCCCCCCcCcCHHHHHHHHHHccCCcccCcCH
Confidence            33 335567889999999999999998 666652                         358899999999999999999


Q ss_pred             HHHHHHHHhhhhc
Q 044320          135 LEVARQLENISSM  147 (176)
Q Consensus       135 ~~i~~~l~~~~~~  147 (176)
                      .++++.|+++...
T Consensus       273 ~~l~~~l~~~~~~  285 (291)
T 1u46_A          273 VALRDFLLEAQPT  285 (291)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHhCcc
Confidence            9999999977654

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.93  E-value=2.5e-26  Score=173.52  Aligned_cols=131  Identities=21%  Similarity=0.288  Sum_probs=108.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC----CeEEeecCCcccCCCCCC-CCccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF----TPKVFDFEISRLAPVPNI-NGVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~----~~~l~dfg~~~~~~~~~~-~~~~~~~~~~   80 (176)
                      +..+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++    .++++|||++........ ....+...+.
T Consensus       109 ~~~~~~~~~~~i~~qi~~aL~~lH~~~---ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~  185 (321)
T 2a2a_A          109 KESLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFV  185 (321)
T ss_dssp             CSCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCCCCCCCSCGGGC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCChHHEEEecCCCCcCCEEEccCccceecCccccccccCCCCCcc
Confidence            456899999999999999999999999   99999999999998887    799999999976554322 2233445455


Q ss_pred             ecCC-CCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           81 VKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        81 ~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +|+. ....++.++|+||+|+++|++.++..||                           +..+.+++.+||..+|.+||
T Consensus       186 aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp  265 (321)
T 2a2a_A          186 APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRL  265 (321)
T ss_dssp             CHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSC
T ss_pred             CcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCChhhCc
Confidence            4443 4677899999999999999998877664                           13478999999999999999


Q ss_pred             CHHHHHH
Q 044320          133 SMLEVAR  139 (176)
Q Consensus       133 ~~~~i~~  139 (176)
                      ++.++++
T Consensus       266 s~~e~l~  272 (321)
T 2a2a_A          266 TIQEALR  272 (321)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHhc
Confidence            9999876

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.93  E-value=2e-26  Score=172.65  Aligned_cols=132  Identities=14%  Similarity=0.197  Sum_probs=109.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe---CCCCCeEEeecCCcccCCCCCCCCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL---DSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~---~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~   82 (176)
                      ...+++.++..++.|++.||.|||+.+   ++|+||+|+||++   +.++.++++|||++............+...+.+|
T Consensus       100 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aP  176 (304)
T 2jam_A          100 RGVYTEKDASLVIQQVLSAVKYLHENG---IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAP  176 (304)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCCT
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCccccccCCCCccCh
Confidence            346899999999999999999999999   9999999999999   6788999999999876554332223344555555


Q ss_pred             CCC-CCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           83 GTH-TQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        83 ~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +.. ...++.++|+||+|+++|++.++..||                           +..+.+++.+||..+|.+||++
T Consensus       177 E~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~  256 (304)
T 2jam_A          177 EVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTC  256 (304)
T ss_dssp             TTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHHHHCSSTTTSCCH
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCH
Confidence            544 667889999999999999998877664                           2458899999999999999999


Q ss_pred             HHHHHH
Q 044320          135 LEVARQ  140 (176)
Q Consensus       135 ~~i~~~  140 (176)
                      .++++.
T Consensus       257 ~~~l~h  262 (304)
T 2jam_A          257 EKALSH  262 (304)
T ss_dssp             HHHHTS
T ss_pred             HHHhcC
Confidence            999863

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.93  E-value=1.3e-26  Score=176.81  Aligned_cols=130  Identities=17%  Similarity=0.150  Sum_probs=106.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC------------CCcc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI------------NGVV   74 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~------------~~~~   74 (176)
                      ..+++.++..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++........            ....
T Consensus       107 ~~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~  183 (353)
T 2b9h_A          107 QMLSDDHIQYFIYQTLRAVKVLHGSN---VIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFV  183 (353)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECC----------------CCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEcCCCcEEEEecccccccccccccccCccccccchhhcc
Confidence            46899999999999999999999999   99999999999999999999999999976543211            1123


Q ss_pred             ccceeeecCCC--CCCCCcccchhhHhHHHHHHhccChHH----------------------------------------
Q 044320           75 GHVSIVVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------------  112 (176)
Q Consensus        75 ~~~~~~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------------  112 (176)
                      +...+.+|+..  ...++.++||||+|+++|+|.++..+|                                        
T Consensus       184 gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
T 2b9h_A          184 ATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSL  263 (353)
T ss_dssp             CCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTS
T ss_pred             ccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhcc
Confidence            44555555532  467899999999999999998776543                                        


Q ss_pred             ---------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ---------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ---------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                     +..+.+++.+||..+|++||++.++++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (353)
T 2b9h_A          264 PMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE  305 (353)
T ss_dssp             CCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence                           234678999999999999999999987

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.93  E-value=3.3e-27  Score=180.81  Aligned_cols=131  Identities=20%  Similarity=0.315  Sum_probs=106.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcC-CCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecC-C
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTE-ADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKG-T   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~-~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~-~   84 (176)
                      ..+++..+..++.|++.||.|||+. +   ++|+||||+||+++.++.++|+|||++............+...+.+|+ .
T Consensus       126 ~~~~~~~~~~i~~~i~~~l~~lh~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~  202 (360)
T 3eqc_A          126 GRIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERL  202 (360)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHC---CCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC----CCCCTTCCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhCC---EEcCCccHHHEEECCCCCEEEEECCCCcccccccccCCCCCCCeECHHHH
Confidence            4689999999999999999999985 8   999999999999999999999999998654322222233444444444 3


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHH----------------------------------------------------
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------------------------------  112 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------------------------------  112 (176)
                      ....++.++||||+|+++|+|.++..||                                                    
T Consensus       203 ~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (360)
T 3eqc_A          203 QGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLD  282 (360)
T ss_dssp             TTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC------------------------------CCCHHHHHH
T ss_pred             cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhhhh
Confidence            4667899999999999999998887554                                                    


Q ss_pred             ---------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 ---------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 ---------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                     +..+.+++.+||..+|.+|||+.++++.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  325 (360)
T 3eqc_A          283 YIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH  325 (360)
T ss_dssp             HHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             HHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence                           2357899999999999999999999763

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.93  E-value=2.5e-26  Score=182.12  Aligned_cols=131  Identities=16%  Similarity=0.259  Sum_probs=109.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~~   84 (176)
                      +..+++.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++........ ....|...+.+|+.
T Consensus       110 ~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~  186 (476)
T 2y94_A          110 NGRLDEKESRRLFQQILSGVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEV  186 (476)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEECTTCCEEECCCSSCEECCTTCCBCCCCSCSTTCCHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcccccHHHEEEecCCCeEEEeccchhhccccccccccCCCcCeEChhh
Confidence            457999999999999999999999999   99999999999999999999999999987654332 22345555555554


Q ss_pred             C-CCCC-CcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           85 H-TQQL-TEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        85 ~-~~~~-~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      . +..+ +.++||||+||++|+|.++..||                       ...+.+++.+||..+|.+||++.++++
T Consensus       187 ~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          187 ISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE  266 (476)
T ss_dssp             HTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCcCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence            4 3333 67999999999999998887665                       235889999999999999999999987

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.93  E-value=1.4e-26  Score=179.46  Aligned_cols=132  Identities=14%  Similarity=0.203  Sum_probs=108.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC--CCCeEEeecCCcccCCCCCC-CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS--KFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~   82 (176)
                      ...+++.+++.++.|++.||.|||+++   ++||||||+||+++.  .+.++|+|||+++....... ....+...+.+|
T Consensus       143 ~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aP  219 (387)
T 1kob_A          143 DYKMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAP  219 (387)
T ss_dssp             TCCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccchHHeEEecCCCCceEEEecccceecCCCcceeeeccCCCccCc
Confidence            457999999999999999999999999   999999999999974  46799999999987654332 122344445544


Q ss_pred             CC-CCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           83 GT-HTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        83 ~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +. ....++.++||||+||++|+|+++..||                           +..+.+++.+||..+|.+||++
T Consensus       220 E~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~  299 (387)
T 1kob_A          220 EIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTV  299 (387)
T ss_dssp             HHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             hhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCH
Confidence            44 4667889999999999999998887665                           2357899999999999999999


Q ss_pred             HHHHHH
Q 044320          135 LEVARQ  140 (176)
Q Consensus       135 ~~i~~~  140 (176)
                      .++++.
T Consensus       300 ~ell~h  305 (387)
T 1kob_A          300 HDALEH  305 (387)
T ss_dssp             HHHHTS
T ss_pred             HHHhhC
Confidence            999864

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.93  E-value=3.2e-26  Score=179.02  Aligned_cols=132  Identities=22%  Similarity=0.228  Sum_probs=104.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC---CeEEeecCCcccCCCCCC-CCccccceee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF---TPKVFDFEISRLAPVPNI-NGVVGHVSIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~---~~~l~dfg~~~~~~~~~~-~~~~~~~~~~   80 (176)
                      .+..+++.++..++.|++.||+|||+++   ++||||||+||+++.++   .+||+|||+++....... ....|...+.
T Consensus       232 ~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~  308 (419)
T 3i6u_A          232 GNKRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYL  308 (419)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC-----------CTTC
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCCCcceEEEeecccceecCCCccccccCCCCCcc
Confidence            3467999999999999999999999999   99999999999997544   599999999987654332 2234555566


Q ss_pred             ecCCC----CCCCCcccchhhHhHHHHHHhccChHH----------------------------HHHHHHHHHhhcccCC
Q 044320           81 VKGTH----TQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------LKRFMSLALKYCEDET  128 (176)
Q Consensus        81 ~~~~~----~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------~~~l~~l~~~~~~~~p  128 (176)
                      +|+..    ...++.++||||+|+++|+|+++..||                            +..+.+++.+||..+|
T Consensus       309 aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  388 (419)
T 3i6u_A          309 APEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDP  388 (419)
T ss_dssp             CTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSST
T ss_pred             CceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCCh
Confidence            66654    356788999999999999998876664                            2357899999999999


Q ss_pred             CCCCCHHHHHH
Q 044320          129 KARPSMLEVAR  139 (176)
Q Consensus       129 ~~Rp~~~~i~~  139 (176)
                      ++||++.++++
T Consensus       389 ~~Rps~~e~l~  399 (419)
T 3i6u_A          389 KARFTTEEALR  399 (419)
T ss_dssp             TTSCCHHHHHH
T ss_pred             hHCcCHHHHhC
Confidence            99999999876

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.93  E-value=3.8e-26  Score=171.70  Aligned_cols=131  Identities=22%  Similarity=0.267  Sum_probs=108.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.+++.++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......  .....+...+.+|+
T Consensus       119 ~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  195 (314)
T 3com_A          119 NKTLTEDEIATILQSTLKGLEYLHFMR---KIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPE  195 (314)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---CcCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccChh
Confidence            567999999999999999999999999   9999999999999999999999999987654322  12223444444444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      . ....++.++||||||+++|++.++..||                          +..+.+++.+||..+|.+||++.+
T Consensus       196 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~  275 (314)
T 3com_A          196 VIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQ  275 (314)
T ss_dssp             HHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHH
T ss_pred             hcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccCCcccCCHHHHHHHHHHccCChhhCcCHHH
Confidence            3 4667889999999999999998887664                          245889999999999999999999


Q ss_pred             HHH
Q 044320          137 VAR  139 (176)
Q Consensus       137 i~~  139 (176)
                      +++
T Consensus       276 ll~  278 (314)
T 3com_A          276 LLQ  278 (314)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            976

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.93  E-value=1.9e-26  Score=172.55  Aligned_cols=113  Identities=20%  Similarity=0.276  Sum_probs=99.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCCeEEeecCCcccCCCCCCCCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS---KFTPKVFDFEISRLAPVPNINGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~---~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~   82 (176)
                      ...+++.+++.++.|++.||.|||+++   ++||||||+||+++.   ++.++++|||++....                
T Consensus       111 ~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~----------------  171 (299)
T 3m2w_A          111 DQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT----------------  171 (299)
T ss_dssp             TCCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCCTTCEECT----------------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEecCCCCCcEEEeccccccccc----------------
Confidence            457999999999999999999999999   999999999999988   7889999999886533                


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhccChHH-------------------------------HHHHHHHHHhhcccCCCCC
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------LKRFMSLALKYCEDETKAR  131 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------~~~l~~l~~~~~~~~p~~R  131 (176)
                         ...++.++||||+|+++|+|.++..||                               +..+.+++.+||..+|.+|
T Consensus       172 ---~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R  248 (299)
T 3m2w_A          172 ---GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQR  248 (299)
T ss_dssp             ---TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTS
T ss_pred             ---cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhC
Confidence               234677999999999999998876654                               3468899999999999999


Q ss_pred             CCHHHHHHH
Q 044320          132 PSMLEVARQ  140 (176)
Q Consensus       132 p~~~~i~~~  140 (176)
                      |++.++++.
T Consensus       249 ps~~e~l~h  257 (299)
T 3m2w_A          249 MTITEFMNH  257 (299)
T ss_dssp             CCHHHHHTS
T ss_pred             CCHHHHhcC
Confidence            999999874

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.93  E-value=5.2e-26  Score=174.85  Aligned_cols=130  Identities=18%  Similarity=0.245  Sum_probs=108.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecCCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKGTH   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~~~   85 (176)
                      ..+++.++..++.|++.||.|||+.+   ++|+||||.||+++.++.++++|||++....... .....+...+.+|+..
T Consensus       195 ~~l~~~~~~~i~~qi~~~L~~LH~~g---i~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~  271 (365)
T 2y7j_A          195 VALSEKETRSIMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEIL  271 (365)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEEEecCcccccCCCcccccCCCCCCccChhhc
Confidence            46899999999999999999999999   9999999999999999999999999987655432 2233455555555433


Q ss_pred             -------CCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCC
Q 044320           86 -------TQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        86 -------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                             ...++.++||||||+++|+|.++..||.                           ..+.+++.+||..+|++|
T Consensus       272 ~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  351 (365)
T 2y7j_A          272 KCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEAR  351 (365)
T ss_dssp             HHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTS
T ss_pred             cccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHC
Confidence                   3357889999999999999988876641                           237899999999999999


Q ss_pred             CCHHHHHH
Q 044320          132 PSMLEVAR  139 (176)
Q Consensus       132 p~~~~i~~  139 (176)
                      |++.++++
T Consensus       352 ps~~ell~  359 (365)
T 2y7j_A          352 LTAEQALQ  359 (365)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHhc
Confidence            99999886

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.93  E-value=1.6e-26  Score=189.58  Aligned_cols=139  Identities=23%  Similarity=0.267  Sum_probs=112.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Cccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~~   82 (176)
                      +..+++..++.++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++........   ...+...+.+|
T Consensus       485 ~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aP  561 (656)
T 2j0j_A          485 KFSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAP  561 (656)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCH
Confidence            456999999999999999999999999   999999999999999999999999999876543321   11222333333


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      + .....++.++||||||+++|||++ +..||.                        ..+.+++.+||..+|.+||++.+
T Consensus       562 E~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~e  641 (656)
T 2j0j_A          562 ESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTE  641 (656)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhHCcCHHH
Confidence            3 346678999999999999999986 655542                        45889999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 044320          137 VARQLENISSM  147 (176)
Q Consensus       137 i~~~l~~~~~~  147 (176)
                      +++.|+.+...
T Consensus       642 l~~~L~~il~~  652 (656)
T 2j0j_A          642 LKAQLSTILEE  652 (656)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988653

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.93  E-value=2.8e-26  Score=188.62  Aligned_cols=130  Identities=17%  Similarity=0.205  Sum_probs=108.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC--CCCCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP--NINGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~~~~~   84 (176)
                      ..+++.+++.|+.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++.....  ......|+..|.+|+.
T Consensus       437 ~~~~~~~~~~~~~qi~~aL~~LH~~g---IiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~  513 (674)
T 3pfq_A          437 GRFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEI  513 (674)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHTS---EECCCCCSTTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eEeccCChhhEEEcCCCcEEEeecceeeccccCCcccccccCCCcccCHhh
Confidence            56999999999999999999999999   999999999999999999999999999864322  2223445665655554


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCH-----H
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSM-----L  135 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~-----~  135 (176)
                       ....++.++||||||+++|||+++..||.                       .++.+++.+||..+|.+||++     .
T Consensus       514 l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~  593 (674)
T 3pfq_A          514 IAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGER  593 (674)
T ss_dssp             HTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSCCCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHH
T ss_pred             hcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHH
Confidence             46788999999999999999998887763                       358899999999999999997     5


Q ss_pred             HHHH
Q 044320          136 EVAR  139 (176)
Q Consensus       136 ~i~~  139 (176)
                      +|++
T Consensus       594 ei~~  597 (674)
T 3pfq_A          594 DIKE  597 (674)
T ss_dssp             HHHS
T ss_pred             HHhc
Confidence            5543

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.93  E-value=4e-26  Score=171.63  Aligned_cols=139  Identities=15%  Similarity=0.146  Sum_probs=105.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeecC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVKG   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~~   83 (176)
                      ..+++.+++.++.|++.||.|||+++   ++|+||+|+||+++.++.++++|||++........   ....+...+.+|+
T Consensus       129 ~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE  205 (309)
T 2h34_A          129 GPLAPPRAVAIVRQIGSALDAAHAAG---ATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPE  205 (309)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSCCC----------------CCGGGCCGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCc---CCcCCCChHHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHH
Confidence            56899999999999999999999999   99999999999999999999999999876543321   1223444444444


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCCC-CHH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKARP-SML  135 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~Rp-~~~  135 (176)
                       .....++.++|+||||+++|++.++..||                          +..+.+++.+||..+|++|| +++
T Consensus       206 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~  285 (309)
T 2h34_A          206 RFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHINQAIPRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCG  285 (309)
T ss_dssp             GTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHHHSCCCCGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHH
T ss_pred             HHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHhccCCCCccccCCCCCHHHHHHHHHhccCCHHHHHHhHH
Confidence             34667888999999999999998887664                          23478899999999999999 999


Q ss_pred             HHHHHHHhhhhcC
Q 044320          136 EVARQLENISSML  148 (176)
Q Consensus       136 ~i~~~l~~~~~~~  148 (176)
                      ++++.|+......
T Consensus       286 ~l~~~l~~~l~~~  298 (309)
T 2h34_A          286 DLSAAAHAALATA  298 (309)
T ss_dssp             HHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999776654

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.93  E-value=1.9e-26  Score=177.80  Aligned_cols=131  Identities=17%  Similarity=0.172  Sum_probs=108.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe--CCCCCeEEeecCCcccCCCCCC-CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL--DSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~--~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~   82 (176)
                      +..+++.+++.++.|++.||.|||+.+   ++||||||+||++  +.++.++|+|||+++....... ....+...+.+|
T Consensus       181 ~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aP  257 (373)
T 2x4f_A          181 SYNLTELDTILFMKQICEGIRHMHQMY---ILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAP  257 (373)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCCCCCSSCTTCCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccccccCCCcEeCh
Confidence            346899999999999999999999999   9999999999999  5678899999999987654332 222344445444


Q ss_pred             CC-CCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           83 GT-HTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        83 ~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +. ....++.++|||||||++|+|+++..||                           +..+.+++.+||..+|.+||++
T Consensus       258 E~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~  337 (373)
T 2x4f_A          258 EVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISA  337 (373)
T ss_dssp             HHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             hhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhhCCCH
Confidence            43 4567888999999999999998877665                           2357899999999999999999


Q ss_pred             HHHHH
Q 044320          135 LEVAR  139 (176)
Q Consensus       135 ~~i~~  139 (176)
                      .++++
T Consensus       338 ~e~l~  342 (373)
T 2x4f_A          338 SEALK  342 (373)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99987

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.93  E-value=7.2e-26  Score=169.43  Aligned_cols=133  Identities=19%  Similarity=0.180  Sum_probs=107.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~   80 (176)
                      ....+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++++|||++.......    .....+...+.
T Consensus       102 ~~~~~~~~~~~~~~~qi~~al~~LH~~~---i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~  178 (305)
T 2wtk_C          102 PEKRFPVCQAHGYFCQLIDGLEYLHSQG---IVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQ  178 (305)
T ss_dssp             TTCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGC
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCc
Confidence            3567999999999999999999999999   9999999999999999999999999987654221    11223444455


Q ss_pred             ecCCCC---CCCCcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKGTHT---QQLTEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~~~~---~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +|+...   ..++.++||||+|+++|++.++..||                       +..+.+++.+||..+|.+||++
T Consensus       179 aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  258 (305)
T 2wtk_C          179 PPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSI  258 (305)
T ss_dssp             CHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCCSSSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             ChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcCCCCCCCccCHHHHHHHHHHccCChhhCCCH
Confidence            554432   22367899999999999998877654                       2357899999999999999999


Q ss_pred             HHHHHH
Q 044320          135 LEVARQ  140 (176)
Q Consensus       135 ~~i~~~  140 (176)
                      .++++.
T Consensus       259 ~~ll~~  264 (305)
T 2wtk_C          259 RQIRQH  264 (305)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            999864

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.93  E-value=2.3e-26  Score=175.00  Aligned_cols=128  Identities=18%  Similarity=0.204  Sum_probs=103.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC--CeEEeecCCcccCCCCC------CCCccccceee
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF--TPKVFDFEISRLAPVPN------INGVVGHVSIV   80 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~--~~~l~dfg~~~~~~~~~------~~~~~~~~~~~   80 (176)
                      +++..++.++.|++.||+|||+++   ++||||||+||+++.++  .++|+|||++.......      .....+...+.
T Consensus       165 ~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~  241 (345)
T 3hko_A          165 QREKLISNIMRQIFSALHYLHNQG---ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFV  241 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCC---ccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCcccc
Confidence            467889999999999999999999   99999999999998766  89999999987543211      11233444555


Q ss_pred             ecCCC---CCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCC
Q 044320           81 VKGTH---TQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKA  130 (176)
Q Consensus        81 ~~~~~---~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~  130 (176)
                      +|+..   ...++.++||||||+++|+|.++..||                           +..+.+++.+||..+|.+
T Consensus       242 aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  321 (345)
T 3hko_A          242 APEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDE  321 (345)
T ss_dssp             CHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTT
T ss_pred             CchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhH
Confidence            55543   367889999999999999998887765                           245889999999999999


Q ss_pred             CCCHHHHHH
Q 044320          131 RPSMLEVAR  139 (176)
Q Consensus       131 Rp~~~~i~~  139 (176)
                      ||++.++++
T Consensus       322 Rps~~~~l~  330 (345)
T 3hko_A          322 RFDAMRALQ  330 (345)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHhc
Confidence            999999987

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.93  E-value=3.5e-26  Score=174.13  Aligned_cols=131  Identities=19%  Similarity=0.253  Sum_probs=108.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~   84 (176)
                      ...+++.+++.++.|++.||.|||+ .+   ++|+||+|+||+++.++.++|+|||.+............+...+.+|+.
T Consensus       145 ~~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~  221 (348)
T 2pml_X          145 TCFIPIQVIKCIIKSVLNSFSYIHNEKN---ICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEF  221 (348)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHTSC---EECCCCCGGGEEECTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGG
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHhccCC---EeecCCChHhEEEcCCCcEEEeccccccccccccccCCCCCcCccCchh
Confidence            5779999999999999999999999 98   9999999999999999999999999998755443334445555655555


Q ss_pred             C-CC-CCCc-ccchhhHhHHHHHHhccChHH-------------------------------------------HHHHHH
Q 044320           85 H-TQ-QLTE-KSDIYGLGIACLYMGLYSFEY-------------------------------------------LKRFMS  118 (176)
Q Consensus        85 ~-~~-~~~~-~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------~~~l~~  118 (176)
                      . .. .++. ++||||+|+++|++.++..||                                           +..+.+
T Consensus       222 ~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  301 (348)
T 2pml_X          222 FSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDID  301 (348)
T ss_dssp             GSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHH
T ss_pred             hcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHH
Confidence            4 33 4555 899999999999997765543                                           345789


Q ss_pred             HHHhhcccCCCCCCCHHHHHH
Q 044320          119 LALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       119 l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      ++.+||..+|.+||++.++++
T Consensus       302 li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          302 FLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             HHHHHCCSSGGGSCCHHHHHT
T ss_pred             HHHHHccCChhhCCCHHHHhc
Confidence            999999999999999999876

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.93  E-value=2.1e-26  Score=173.03  Aligned_cols=132  Identities=18%  Similarity=0.188  Sum_probs=109.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC-CCCCeEEeecCCcccCCCCCCCCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD-SKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~-~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~   84 (176)
                      +..+++.+++.++.|++.||.|||+++   ++|+||||+||+++ .++.++++|||++............+...+.+++.
T Consensus       133 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~  209 (312)
T 2iwi_A          133 KGPLGEGPSRCFFGQVVAAIQHCHSRG---VVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEW  209 (312)
T ss_dssp             HCSCCHHHHHHHHHHHHHHHHHHHHHT---EECCCCSGGGEEEETTTTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChhhEEEeCCCCeEEEEEcchhhhcccCcccccCCcccccCcee
Confidence            346899999999999999999999999   99999999999998 78999999999988766554444445555555543


Q ss_pred             C-CCCC-CcccchhhHhHHHHHHhccChHH-----------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320           85 H-TQQL-TEKSDIYGLGIACLYMGLYSFEY-----------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus        85 ~-~~~~-~~~~Dv~s~G~~l~~l~~~~~~~-----------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                      . ...+ +.++||||+|+++|++.++..+|                 ...+.+++.+||..+|++||++.++++.
T Consensus       210 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  284 (312)
T 2iwi_A          210 ISRHQYHALPATVWSLGILLYDMVCGDIPFERDQEILEAELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLD  284 (312)
T ss_dssp             HHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHTCCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             eecCCCCCccchHHHHHHHHHHHHHCCCCCCChHHHhhhccCCcccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            3 3333 45899999999999999887765                 3468899999999999999999999863

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.5e-26  Score=174.70  Aligned_cols=131  Identities=23%  Similarity=0.273  Sum_probs=103.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++..++.++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......  .....+...+.+|+
T Consensus       123 ~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE  199 (326)
T 2x7f_A          123 GNTLKEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPE  199 (326)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTCCEEECCCTTTC-------------CCGGGCCHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCcHHHEEEcCCCCEEEeeCcCceecCcCccccccccCCccccChh
Confidence            457999999999999999999999999   9999999999999999999999999987654321  11223444454444


Q ss_pred             CC------CCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           84 TH------TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        84 ~~------~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      ..      ...++.++||||||+++|++.++..||                         +..+.+++.+||..+|.+||
T Consensus       200 ~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp  279 (326)
T 2x7f_A          200 VIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRP  279 (326)
T ss_dssp             HHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCSCSCHHHHHHHHHHCCSSGGGSC
T ss_pred             hhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCccccCCccccCHHHHHHHHHHhccChhhCC
Confidence            33      456889999999999999998887665                         24588999999999999999


Q ss_pred             CHHHHHH
Q 044320          133 SMLEVAR  139 (176)
Q Consensus       133 ~~~~i~~  139 (176)
                      ++.++++
T Consensus       280 s~~~ll~  286 (326)
T 2x7f_A          280 ATEQLMK  286 (326)
T ss_dssp             CHHHHHT
T ss_pred             CHHHHhh
Confidence            9999876

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.93  E-value=6.8e-27  Score=177.29  Aligned_cols=131  Identities=18%  Similarity=0.173  Sum_probs=101.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC-----CCCCeEEeecCCcccCCCCC--CCCccccce
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD-----SKFTPKVFDFEISRLAPVPN--INGVVGHVS   78 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~-----~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~   78 (176)
                      ...+++.+++.++.|++.||.|||+++   ++||||||+||+++     ..+.++|+|||++.......  .....+...
T Consensus       126 ~~~~~~~~~~~i~~ql~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~  202 (329)
T 3gbz_A          126 NPDVSMRVIKSFLYQLINGVNFCHSRR---CLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLW  202 (329)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------CCT
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---EECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCcc
Confidence            456999999999999999999999999   99999999999994     44569999999987644222  122233444


Q ss_pred             eeecCCC-C-CCCCcccchhhHhHHHHHHhccChHH--------------------------------------------
Q 044320           79 IVVKGTH-T-QQLTEKSDIYGLGIACLYMGLYSFEY--------------------------------------------  112 (176)
Q Consensus        79 ~~~~~~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------------------------  112 (176)
                      +.+|+.. . ..++.++||||+||++|++.++..+|                                            
T Consensus       203 y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (329)
T 3gbz_A          203 YRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKT  282 (329)
T ss_dssp             TCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCC
T ss_pred             ccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhcccc
Confidence            5555443 3 45799999999999999998877654                                            


Q ss_pred             ---------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 ---------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 ---------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                               ...+.+++.+||..+|.+|||+.++++
T Consensus       283 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          283 LKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             HHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence                     245678999999999999999999876

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.93  E-value=2.2e-26  Score=176.74  Aligned_cols=132  Identities=22%  Similarity=0.285  Sum_probs=100.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCC--eEEeecCCcccCCCCC-CCCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFT--PKVFDFEISRLAPVPN-INGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~--~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~   82 (176)
                      ...+++.++..++.|++.||+|||+++   ++||||||+||+++.++.  +||+|||+++...... .....+...+.+|
T Consensus       110 ~~~~~~~~~~~i~~ql~~~L~~LH~~~---ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aP  186 (361)
T 3uc3_A          110 AGRFSEDEARFFFQQLLSGVSYCHSMQ---ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAP  186 (361)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTT---CCSCCCCGGGEEECSSSSCCEEECCCCCC---------------CTTSCH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCCCCcCCCCcCCh
Confidence            356999999999999999999999999   999999999999987665  9999999987433221 2223355555555


Q ss_pred             CCC-CCCCCcc-cchhhHhHHHHHHhccChHHH-----------------------------HHHHHHHHhhcccCCCCC
Q 044320           83 GTH-TQQLTEK-SDIYGLGIACLYMGLYSFEYL-----------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        83 ~~~-~~~~~~~-~Dv~s~G~~l~~l~~~~~~~~-----------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                      +.. ...+..+ +||||+||++|+|.++..||.                             ..+.+++.+||..+|.+|
T Consensus       187 E~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  266 (361)
T 3uc3_A          187 EVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATR  266 (361)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCHHHHHHHHHHSCSCTTTS
T ss_pred             hhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCHHHHHHHHHHccCChhHC
Confidence            543 5555544 899999999999988876652                             347889999999999999


Q ss_pred             CCHHHHHHH
Q 044320          132 PSMLEVARQ  140 (176)
Q Consensus       132 p~~~~i~~~  140 (176)
                      ||+.++++.
T Consensus       267 ps~~ell~h  275 (361)
T 3uc3_A          267 ISIPEIKTH  275 (361)
T ss_dssp             CCHHHHHTS
T ss_pred             cCHHHHHhC
Confidence            999999875

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.93  E-value=1.7e-26  Score=173.74  Aligned_cols=131  Identities=18%  Similarity=0.210  Sum_probs=102.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCC---eEEeecCCcccCCCCC---------CCCcc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFT---PKVFDFEISRLAPVPN---------INGVV   74 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~---~~l~dfg~~~~~~~~~---------~~~~~   74 (176)
                      ..+++.++..++.|++.||+|||+++   ++||||||+||+++.++.   ++++|||++.......         .....
T Consensus       106 ~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~  182 (316)
T 2ac3_A          106 RHFNELEASVVVQDVASALDFLHNKG---IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPC  182 (316)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESCSSSSCSEEECCTTCCC-------------------C
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCcccccccccccccc
Confidence            56899999999999999999999999   999999999999987765   9999999987643221         11122


Q ss_pred             ccceeeecCCCC------CCCCcccchhhHhHHHHHHhccChHH------------------------------------
Q 044320           75 GHVSIVVKGTHT------QQLTEKSDIYGLGIACLYMGLYSFEY------------------------------------  112 (176)
Q Consensus        75 ~~~~~~~~~~~~------~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------------  112 (176)
                      +...+.+|+...      ..++.++||||+|+++|+|.++..||                                    
T Consensus       183 gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  262 (316)
T 2ac3_A          183 GSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPD  262 (316)
T ss_dssp             CSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCCCH
T ss_pred             CCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCcccCc
Confidence            445555555432      45788999999999999998876654                                    


Q ss_pred             ------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 ------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 ------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                            +..+.+++.+||..+|.+||++.++++.
T Consensus       263 ~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  296 (316)
T 2ac3_A          263 KDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH  296 (316)
T ss_dssp             HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             hhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence                  2347899999999999999999999873

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.93  E-value=2.3e-26  Score=172.89  Aligned_cols=132  Identities=14%  Similarity=0.147  Sum_probs=104.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC-CCCCeEEeecCCcccCCCCC-----CCCcccccee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD-SKFTPKVFDFEISRLAPVPN-----INGVVGHVSI   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~-~~~~~~l~dfg~~~~~~~~~-----~~~~~~~~~~   79 (176)
                      +..+++.+++.++.|++.||+|||+++   ++|+||||+||+++ .++.++|+|||+++......     .....+...+
T Consensus       114 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y  190 (320)
T 2i6l_A          114 QGPLLEEHARLFMYQLLRGLKYIHSAN---VLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWY  190 (320)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTT
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccc
Confidence            356899999999999999999999999   99999999999997 56789999999998654221     1112233334


Q ss_pred             eecCCC--CCCCCcccchhhHhHHHHHHhccChHH---------------------------------------------
Q 044320           80 VVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------------  112 (176)
Q Consensus        80 ~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------------  112 (176)
                      .+|+..  ...++.++|+||||+++|++.++..+|                                             
T Consensus       191 ~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (320)
T 2i6l_A          191 RSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKP  270 (320)
T ss_dssp             CCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCC
T ss_pred             cCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCC
Confidence            444432  367889999999999999998876543                                             


Q ss_pred             --------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 --------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 --------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                              +..+.+++.+||..+|.+||++.++++.
T Consensus       271 ~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (320)
T 2i6l_A          271 LTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH  306 (320)
T ss_dssp             HHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             hhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence                    3457889999999999999999999763

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.93  E-value=4.9e-26  Score=181.62  Aligned_cols=132  Identities=21%  Similarity=0.266  Sum_probs=111.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC---CeEEeecCCcccCCCCC-CCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF---TPKVFDFEISRLAPVPN-INGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~---~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~   81 (176)
                      +..+++.++..++.|++.||.|||+++   ++||||||+||+++.++   .++|+|||++....... .....|...+.+
T Consensus       140 ~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a  216 (504)
T 3q5i_A          140 RHKFDECDAANIMKQILSGICYLHKHN---IVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIA  216 (504)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCCccccccCCcCCCC
Confidence            356999999999999999999999999   99999999999998775   69999999998765432 223446666677


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      |+.....++.++||||+||++|+|.++..||                           +..+.+++.+||..+|.+|||+
T Consensus       217 PE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~  296 (504)
T 3q5i_A          217 PEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTA  296 (504)
T ss_dssp             HHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             HHHhccCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCH
Confidence            7666678999999999999999998877665                           2357899999999999999999


Q ss_pred             HHHHHH
Q 044320          135 LEVARQ  140 (176)
Q Consensus       135 ~~i~~~  140 (176)
                      .++++.
T Consensus       297 ~e~l~h  302 (504)
T 3q5i_A          297 EEALNS  302 (504)
T ss_dssp             HHHHTS
T ss_pred             HHHhcC
Confidence            999764

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.93  E-value=4.2e-26  Score=170.75  Aligned_cols=134  Identities=24%  Similarity=0.266  Sum_probs=110.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......  .....+...+.+|+
T Consensus       113 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE  189 (303)
T 3a7i_A          113 PGPLDETQIATILREILKGLDYLHSEK---KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPE  189 (303)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChheEEECCCCCEEEeecccceecCccccccCccCCCcCccCHH
Confidence            356899999999999999999999999   9999999999999999999999999987654332  12223444444444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH------------------------HHHHHHHHhhcccCCCCCCCHHHHH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------KRFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                      . ....++.++|+||||+++|++.++..||.                        ..+.+++.+||..+|.+||++.+++
T Consensus       190 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll  269 (303)
T 3a7i_A          190 VIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELL  269 (303)
T ss_dssp             HHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHT
T ss_pred             HHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCCCCCCccccCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence            3 46678899999999999999988876652                        3478999999999999999999998


Q ss_pred             HHHH
Q 044320          139 RQLE  142 (176)
Q Consensus       139 ~~l~  142 (176)
                      +..-
T Consensus       270 ~~~~  273 (303)
T 3a7i_A          270 KHKF  273 (303)
T ss_dssp             TCHH
T ss_pred             hChh
Confidence            7543

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.93  E-value=4.4e-26  Score=181.50  Aligned_cols=131  Identities=20%  Similarity=0.269  Sum_probs=110.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC---CCeEEeecCCcccCCCCC-CCCccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK---FTPKVFDFEISRLAPVPN-INGVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~---~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~   82 (176)
                      ..+++.++..++.|++.||.|||+++   ++||||||+||+++..   +.+||+|||++....... .....|..++.+|
T Consensus       131 ~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aP  207 (494)
T 3lij_A          131 MKFNEVDAAVIIKQVLSGVTYLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAP  207 (494)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCBCCCCSCTTTCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccccccCCCcCeeCH
Confidence            56899999999999999999999999   9999999999999764   459999999987655432 2233466666667


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      +.....++.++||||+||++|+|.++..||                           +..+.+++.+||..+|.+|||+.
T Consensus       208 E~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~  287 (494)
T 3lij_A          208 EVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQ  287 (494)
T ss_dssp             HHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             HHHcccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHHHHCCCChhhCccHH
Confidence            666678999999999999999998887665                           23578999999999999999999


Q ss_pred             HHHHH
Q 044320          136 EVARQ  140 (176)
Q Consensus       136 ~i~~~  140 (176)
                      ++++.
T Consensus       288 e~l~h  292 (494)
T 3lij_A          288 QALEH  292 (494)
T ss_dssp             HHHTC
T ss_pred             HHhcC
Confidence            98853

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.93  E-value=3.9e-26  Score=169.11  Aligned_cols=128  Identities=19%  Similarity=0.281  Sum_probs=103.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-------------------CCCeEEeecCCcccCCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-------------------KFTPKVFDFEISRLAPV   67 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-------------------~~~~~l~dfg~~~~~~~   67 (176)
                      ..+++.+++.++.|++.||.|||+++   ++||||||+||+++.                   ...++++|||.+.....
T Consensus       110 ~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~  186 (289)
T 1x8b_A          110 SYFKEAELKDLLLQVGRGLRYIHSMS---LVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISS  186 (289)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCC---EeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCC
Confidence            66999999999999999999999999   999999999999984                   34799999999877654


Q ss_pred             CCCCCccccceeeecCCC-C-CCCCcccchhhHhHHHHHHhccChH---------------------HHHHHHHHHHhhc
Q 044320           68 PNINGVVGHVSIVVKGTH-T-QQLTEKSDIYGLGIACLYMGLYSFE---------------------YLKRFMSLALKYC  124 (176)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~Dv~s~G~~l~~l~~~~~~---------------------~~~~l~~l~~~~~  124 (176)
                      ...  ..+...+.+|+.. . ..++.++||||||+++|++.++..+                     ++..+.+++.+||
T Consensus       187 ~~~--~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  264 (289)
T 1x8b_A          187 PQV--EEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWHEIRQGRLPRIPQVLSQEFTELLKVMI  264 (289)
T ss_dssp             SCC--CCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHHHHHHHTTCCCCCSSCCCHHHHHHHHHHT
T ss_pred             ccc--cCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhHHHHHHcCCCCCCCcccCHHHHHHHHHHh
Confidence            432  2244445444443 2 2456799999999999999876543                     2356899999999


Q ss_pred             ccCCCCCCCHHHHHH
Q 044320          125 EDETKARPSMLEVAR  139 (176)
Q Consensus       125 ~~~p~~Rp~~~~i~~  139 (176)
                      ..+|.+||++.++++
T Consensus       265 ~~dp~~Rps~~~ll~  279 (289)
T 1x8b_A          265 HPDPERRPSAMALVK  279 (289)
T ss_dssp             CSSGGGSCCHHHHHT
T ss_pred             CCCcccCCCHHHHhh
Confidence            999999999999875

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.93  E-value=5.4e-26  Score=167.81  Aligned_cols=131  Identities=23%  Similarity=0.297  Sum_probs=106.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~   81 (176)
                      ...+++.+++.++.|++.||.|||+++   ++|+||+|+||+++.++.++++|||.+.......    .....+...+.+
T Consensus        99 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  175 (276)
T 2yex_A           99 DIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA  175 (276)
T ss_dssp             TTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccC
Confidence            456999999999999999999999999   9999999999999999999999999987543221    122234444555


Q ss_pred             cCCC-CCC-CCcccchhhHhHHHHHHhccChHH--------------------------HHHHHHHHHhhcccCCCCCCC
Q 044320           82 KGTH-TQQ-LTEKSDIYGLGIACLYMGLYSFEY--------------------------LKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        82 ~~~~-~~~-~~~~~Dv~s~G~~l~~l~~~~~~~--------------------------~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      |+.. ... ++.++|+||+|+++|++.++..||                          +..+.+++.+||..+|.+||+
T Consensus       176 PE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  255 (276)
T 2yex_A          176 PELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARIT  255 (276)
T ss_dssp             GGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             hHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccccCchhhcCHHHHHHHHHHCCCCchhCCC
Confidence            5544 334 367899999999999998876554                          235788999999999999999


Q ss_pred             HHHHHH
Q 044320          134 MLEVAR  139 (176)
Q Consensus       134 ~~~i~~  139 (176)
                      +.++++
T Consensus       256 ~~~il~  261 (276)
T 2yex_A          256 IPDIKK  261 (276)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            998876

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.93  E-value=4.1e-26  Score=173.39  Aligned_cols=132  Identities=18%  Similarity=0.252  Sum_probs=108.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      +..+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.++|+|||++.......  .....+...+.+++
T Consensus       135 ~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  211 (335)
T 2owb_A          135 RKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPE  211 (335)
T ss_dssp             HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---CEecCCCchhEEEcCCCCEEEeeccCceecccCcccccccCCCccccCHH
Confidence            356899999999999999999999999   9999999999999999999999999987654322  12223444444444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      . ....++.++||||||+++|+|.++..+|.                       ..+.+++.+||..+|.+||++.++++
T Consensus       212 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  291 (335)
T 2owb_A          212 VLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLN  291 (335)
T ss_dssp             HHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             HhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            3 36667889999999999999988876642                       35789999999999999999999987


Q ss_pred             H
Q 044320          140 Q  140 (176)
Q Consensus       140 ~  140 (176)
                      .
T Consensus       292 ~  292 (335)
T 2owb_A          292 D  292 (335)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.93  E-value=2.7e-26  Score=173.57  Aligned_cols=131  Identities=24%  Similarity=0.287  Sum_probs=98.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcC-CCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-CccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTE-ADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-GVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~-~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~~~   83 (176)
                      ...+++..+..++.|++.||.|||+. +   ++|+||||+||+++.++.++|+|||+++........ ...+...+.+|+
T Consensus       119 ~~~~~~~~~~~i~~~i~~~l~~lH~~~~---ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE  195 (327)
T 3aln_A          119 DDVIPEEILGKITLATVKALNHLKENLK---IIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPE  195 (327)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHS---CCCSCCCGGGEEEETTTEEEECCCSSSCC--------------------
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHhccCC---EeECCCCHHHEEEcCCCCEEEccCCCceecccccccccCCCCccccCce
Confidence            56799999999999999999999998 8   999999999999999999999999999765433221 223445555555


Q ss_pred             CC-----CCCCCcccchhhHhHHHHHHhccChHH-----------------------------HHHHHHHHHhhcccCCC
Q 044320           84 TH-----TQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------------LKRFMSLALKYCEDETK  129 (176)
Q Consensus        84 ~~-----~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------------~~~l~~l~~~~~~~~p~  129 (176)
                      ..     ...++.++||||||+++|+|.++..||                             +..+.+++.+||..+|.
T Consensus       196 ~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~  275 (327)
T 3aln_A          196 RIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDES  275 (327)
T ss_dssp             ----------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGG
T ss_pred             eeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhCChh
Confidence            43     456889999999999999998876554                             23588999999999999


Q ss_pred             CCCCHHHHHH
Q 044320          130 ARPSMLEVAR  139 (176)
Q Consensus       130 ~Rp~~~~i~~  139 (176)
                      +||++.++++
T Consensus       276 ~Rps~~ell~  285 (327)
T 3aln_A          276 KRPKYKELLK  285 (327)
T ss_dssp             GSCCHHHHTT
T ss_pred             hCcCHHHHHh
Confidence            9999999865

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.93  E-value=5.3e-26  Score=172.36  Aligned_cols=131  Identities=16%  Similarity=0.129  Sum_probs=103.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ...+++.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++......  .....|...+.+|+
T Consensus       115 ~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE  191 (327)
T 3a62_A          115 EGIFMEDTACFYLAEISMALGHLHQKG---IIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPE  191 (327)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTSCEEECCCSCC----------CTTSSCCTTSCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---EEcccCCHHHeEECCCCcEEEEeCCcccccccCCccccccCCCcCccCHh
Confidence            346899999999999999999999999   9999999999999999999999999987543221  12223444444444


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCC-----CH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARP-----SM  134 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp-----~~  134 (176)
                      . ....++.++||||+|+++|+|.++..||                       +..+.+++.+||..+|.+||     ++
T Consensus       192 ~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~  271 (327)
T 3a62_A          192 ILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDA  271 (327)
T ss_dssp             HHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTH
T ss_pred             hCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCH
Confidence            3 4667899999999999999998887765                       24588999999999999999     67


Q ss_pred             HHHHH
Q 044320          135 LEVAR  139 (176)
Q Consensus       135 ~~i~~  139 (176)
                      .++++
T Consensus       272 ~e~l~  276 (327)
T 3a62_A          272 GEVQA  276 (327)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            77755

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.93  E-value=1.8e-26  Score=174.62  Aligned_cols=139  Identities=21%  Similarity=0.235  Sum_probs=110.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCCeEEeecCCcccCCCCCC----CCcccccee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS---KFTPKVFDFEISRLAPVPNI----NGVVGHVSI   79 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~---~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~   79 (176)
                      ..+++.+++.++.|++.||.|||+++   ++||||||+||+++.   +..++|+|||++........    ....+...+
T Consensus       135 ~~~~~~~~~~i~~qi~~al~~LH~~~---i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y  211 (327)
T 2yfx_A          135 SSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKW  211 (327)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGG
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhCC---eecCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcce
Confidence            45999999999999999999999999   999999999999984   44699999998864322211    112233334


Q ss_pred             eecC-CCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCC
Q 044320           80 VVKG-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        80 ~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      .+|+ .....++.++||||||+++|++++ +..||.                        ..+.+++.+||..+|.+||+
T Consensus       212 ~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps  291 (327)
T 2yfx_A          212 MPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPN  291 (327)
T ss_dssp             CCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             eCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcC
Confidence            4443 336678999999999999999987 655442                        35789999999999999999


Q ss_pred             HHHHHHHHHhhhhcC
Q 044320          134 MLEVARQLENISSML  148 (176)
Q Consensus       134 ~~~i~~~l~~~~~~~  148 (176)
                      +.++++.|+.+....
T Consensus       292 ~~~ll~~l~~~~~~~  306 (327)
T 2yfx_A          292 FAIILERIEYCTQDP  306 (327)
T ss_dssp             HHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHhcCH
Confidence            999999999887653

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.93  E-value=3.9e-26  Score=171.76  Aligned_cols=131  Identities=22%  Similarity=0.293  Sum_probs=103.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~   81 (176)
                      ...+++.+++.++.|++.||.|||+++   ++|+||||+||+++. +.++|+|||++........    ....+...+.+
T Consensus       121 ~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~a  196 (313)
T 3cek_A          121 KKSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMP  196 (313)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEET-TEEEECCCSSSCC--------------CCGGGCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcccEEEEC-CeEEEeeccccccccCccccccccCCCCCCCcCC
Confidence            457899999999999999999999999   999999999999964 8899999999976543321    12234444555


Q ss_pred             cCCCC------------CCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhh
Q 044320           82 KGTHT------------QQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKY  123 (176)
Q Consensus        82 ~~~~~------------~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~  123 (176)
                      |+...            ..++.++||||||+++|+|.++..||.                          ..+.+++.+|
T Consensus       197 PE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  276 (313)
T 3cek_A          197 PEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCC  276 (313)
T ss_dssp             HHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHH
T ss_pred             HHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCcccchHHHHHHHHHH
Confidence            54432            467889999999999999988877652                          3588999999


Q ss_pred             cccCCCCCCCHHHHHHH
Q 044320          124 CEDETKARPSMLEVARQ  140 (176)
Q Consensus       124 ~~~~p~~Rp~~~~i~~~  140 (176)
                      |..+|.+||++.++++.
T Consensus       277 l~~dp~~Rps~~ell~h  293 (313)
T 3cek_A          277 LKRDPKQRISIPELLAH  293 (313)
T ss_dssp             TCSSTTTSCCHHHHHTS
T ss_pred             ccCCcccCcCHHHHhcC
Confidence            99999999999999874

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.93  E-value=1.4e-26  Score=183.91  Aligned_cols=132  Identities=20%  Similarity=0.244  Sum_probs=111.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEe---CCCCCeEEeecCCcccCCCCCC-CCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLL---DSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~---~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~   81 (176)
                      +..+++.++..++.|++.||.|||+++   ++||||||+||++   +.++.++|+|||++........ ....+...+.+
T Consensus       120 ~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a  196 (484)
T 3nyv_A          120 RKRFSEVDAARIIRQVLSGITYMHKNK---IVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIA  196 (484)
T ss_dssp             CSCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccccccCCCCccccC
Confidence            456999999999999999999999999   9999999999999   4678999999999876554332 22345666666


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      |+.....++.++||||+||++|+|.++..||                           +..+.+++.+||..+|.+|||+
T Consensus       197 PE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~  276 (484)
T 3nyv_A          197 PEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISA  276 (484)
T ss_dssp             HHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             ceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHCCCChhHCcCH
Confidence            6666667999999999999999998877665                           2358899999999999999999


Q ss_pred             HHHHHH
Q 044320          135 LEVARQ  140 (176)
Q Consensus       135 ~~i~~~  140 (176)
                      .++++.
T Consensus       277 ~e~l~h  282 (484)
T 3nyv_A          277 RDALDH  282 (484)
T ss_dssp             HHHHTS
T ss_pred             HHHhhC
Confidence            999864

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.93  E-value=3.9e-26  Score=172.43  Aligned_cols=131  Identities=22%  Similarity=0.247  Sum_probs=105.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCC---eEEeecCCcccCCCCCC-CCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFT---PKVFDFEISRLAPVPNI-NGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~---~~l~dfg~~~~~~~~~~-~~~~~~~~~~~   81 (176)
                      ...+++.+++.++.|++.||.|||+++   ++|+||||+||+++.++.   ++|+|||++........ ....+...+.+
T Consensus       108 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~a  184 (322)
T 2ycf_A          108 NKRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLA  184 (322)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHHHHHHHSCCTTCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEecCCCCCeEEEccCccceecccccccccccCCcCccC
Confidence            457999999999999999999999999   999999999999987654   99999999977654321 11223344444


Q ss_pred             cCC----CCCCCCcccchhhHhHHHHHHhccChHH----------------------------HHHHHHHHHhhcccCCC
Q 044320           82 KGT----HTQQLTEKSDIYGLGIACLYMGLYSFEY----------------------------LKRFMSLALKYCEDETK  129 (176)
Q Consensus        82 ~~~----~~~~~~~~~Dv~s~G~~l~~l~~~~~~~----------------------------~~~l~~l~~~~~~~~p~  129 (176)
                      |+.    ....++.++||||||+++|++.++..||                            +..+.+++.+||..+|.
T Consensus       185 PE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~  264 (322)
T 2ycf_A          185 PEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPK  264 (322)
T ss_dssp             HHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTT
T ss_pred             chhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhCccccCchhhhhcCHHHHHHHHHHcccCHh
Confidence            443    2567889999999999999998876554                            23578999999999999


Q ss_pred             CCCCHHHHHH
Q 044320          130 ARPSMLEVAR  139 (176)
Q Consensus       130 ~Rp~~~~i~~  139 (176)
                      +||++.++++
T Consensus       265 ~Rps~~~~l~  274 (322)
T 2ycf_A          265 ARFTTEEALR  274 (322)
T ss_dssp             TSCCHHHHHT
T ss_pred             hCCCHHHHhh
Confidence            9999999874

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.92  E-value=2.7e-26  Score=185.02  Aligned_cols=131  Identities=23%  Similarity=0.237  Sum_probs=109.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~~   84 (176)
                      ...+++.+++.++.||+.||.|||+++   |+||||||+||+++.++.+||+|||+++....... ....|+..+.+|+.
T Consensus       280 ~~~l~e~~~~~i~~qIl~aL~yLH~~g---IvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APEv  356 (576)
T 2acx_A          280 QAGFPEARAVFYAAEICCGLEDLHRER---IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEV  356 (576)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCEECCCSCGGGCCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCchheEEEeCCCCeEEEecccceecccCccccccCCCccccCHHH
Confidence            345999999999999999999999999   99999999999999999999999999987654322 23345555555554


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCC----
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARP----  132 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp----  132 (176)
                       ....++.++||||+||++|+|+++..||.                           ..+.+++.+||..+|.+||    
T Consensus       357 l~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~  436 (576)
T 2acx_A          357 VKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRG  436 (576)
T ss_dssp             HTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSS
T ss_pred             HcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccccCCccCCHHHHHHHHHhccCCHHHcCCCCC
Confidence             35678999999999999999988877652                           3478899999999999999    


Q ss_pred             -CHHHHHH
Q 044320          133 -SMLEVAR  139 (176)
Q Consensus       133 -~~~~i~~  139 (176)
                       ++.++++
T Consensus       437 ~sa~eil~  444 (576)
T 2acx_A          437 GSAREVKE  444 (576)
T ss_dssp             SHHHHHHT
T ss_pred             CCHHHHHh
Confidence             6777764

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.92  E-value=3.1e-26  Score=175.43  Aligned_cols=132  Identities=18%  Similarity=0.133  Sum_probs=106.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeecC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVKG   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~~   83 (176)
                      ..+++.++..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||+++.......   ....+...+.+|+
T Consensus       154 ~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE  230 (355)
T 1vzo_A          154 ERFTEHEVQIYVGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPD  230 (355)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChh
Confidence            46899999999999999999999999   99999999999999999999999999876543221   1223455555555


Q ss_pred             CCC---CCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCC-
Q 044320           84 THT---QQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARP-  132 (176)
Q Consensus        84 ~~~---~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp-  132 (176)
                      ...   ..++.++|||||||++|+|+++..||.                           ..+.+++.+||..+|.+|| 
T Consensus       231 ~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~  310 (355)
T 1vzo_A          231 IVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLG  310 (355)
T ss_dssp             HHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTT
T ss_pred             hhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCCCCCcccCHHHHHHHHHHhhhCHHHhcC
Confidence            432   446889999999999999998877762                           2477899999999999999 


Q ss_pred             ----CHHHHHHHH
Q 044320          133 ----SMLEVARQL  141 (176)
Q Consensus       133 ----~~~~i~~~l  141 (176)
                          ++.++++..
T Consensus       311 ~~~~s~~ell~h~  323 (355)
T 1vzo_A          311 CGPRDADEIKEHL  323 (355)
T ss_dssp             SSTTTHHHHHTSG
T ss_pred             CCCCCHHHHHcCc
Confidence                888887653

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.92  E-value=2.3e-26  Score=172.99  Aligned_cols=131  Identities=20%  Similarity=0.344  Sum_probs=100.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcC-CCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTE-ADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~-~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~   83 (176)
                      ...+++..++.++.|++.||.|||++ +   ++|+||+|+||+++.++.++|+|||++........ ....+...+.+|+
T Consensus       118 ~~~~~~~~~~~~~~~i~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE  194 (318)
T 2dyl_A          118 QGPIPERILGKMTVAIVKALYYLKEKHG---VIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPE  194 (318)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCGGGEEECTTSCEEECCCTTC--------------CCTTCCHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhCC---EEeCCCCHHHEEECCCCCEEEEECCCchhccCCccccccCCCccccChh
Confidence            56799999999999999999999985 8   99999999999999999999999999876543321 1223333444444


Q ss_pred             CC------CCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCC
Q 044320           84 TH------TQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKA  130 (176)
Q Consensus        84 ~~------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~  130 (176)
                      ..      ...++.++||||||+++|+|.++..||.                           ..+.+++.+||..+|.+
T Consensus       195 ~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  274 (318)
T 2dyl_A          195 RIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRK  274 (318)
T ss_dssp             HHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTT
T ss_pred             hcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCCCCccCCCCHHHHHHHHHHccCChhH
Confidence            32      4567889999999999999988776542                           35889999999999999


Q ss_pred             CCCHHHHHH
Q 044320          131 RPSMLEVAR  139 (176)
Q Consensus       131 Rp~~~~i~~  139 (176)
                      ||++.++++
T Consensus       275 Rps~~~ll~  283 (318)
T 2dyl_A          275 RPKYNKLLE  283 (318)
T ss_dssp             SCCHHHHTT
T ss_pred             CcCHHHHhh
Confidence            999998875

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.92  E-value=1.2e-25  Score=166.61  Aligned_cols=139  Identities=18%  Similarity=0.279  Sum_probs=109.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC----CeEEeecCCcccCCCCCC-CCccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF----TPKVFDFEISRLAPVPNI-NGVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~----~~~l~dfg~~~~~~~~~~-~~~~~~~~~~   80 (176)
                      +..+++.+++.++.|++.||.|||+++   ++|+||+|+||+++.++    .++++|||.+........ ....+...+.
T Consensus       102 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~  178 (283)
T 3bhy_A          102 KESLTEDEATQFLKQILDGVHYLHSKR---IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFV  178 (283)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC--------CCCGGGC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCcccccCCCcCcc
Confidence            356899999999999999999999999   99999999999998776    799999999876543321 2223444444


Q ss_pred             ecCC-CCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           81 VKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        81 ~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +|+. ....++.++|+||||+++|++.++..||                           +..+.+++.+||..+|.+||
T Consensus       179 aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp  258 (283)
T 3bhy_A          179 APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRM  258 (283)
T ss_dssp             CHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSC
T ss_pred             CcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhHCc
Confidence            4443 4567889999999999999998877664                           13478999999999999999


Q ss_pred             CHHHHHH--HHHhhhhc
Q 044320          133 SMLEVAR--QLENISSM  147 (176)
Q Consensus       133 ~~~~i~~--~l~~~~~~  147 (176)
                      ++.++++  .++.+...
T Consensus       259 s~~~~l~h~~~~~~~~~  275 (283)
T 3bhy_A          259 TIAQSLEHSWIKAIRRR  275 (283)
T ss_dssp             CHHHHHHCHHHHHHHHC
T ss_pred             CHHHHHhCHHHHHHHHH
Confidence            9999987  45555443

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.92  E-value=8.7e-26  Score=176.08  Aligned_cols=131  Identities=19%  Similarity=0.206  Sum_probs=109.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC---CCCccccceeeecC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN---INGVVGHVSIVVKG   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~~   83 (176)
                      ..+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++......   .....|+..+.+|+
T Consensus       163 ~~~~e~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE  239 (410)
T 3v8s_A          163 YDVPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPE  239 (410)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHH
Confidence            46899999999999999999999999   9999999999999999999999999997765433   22334566666665


Q ss_pred             CC-CCC----CCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCC-
Q 044320           84 TH-TQQ----LTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKA-  130 (176)
Q Consensus        84 ~~-~~~----~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~-  130 (176)
                      .. ...    ++.++|||||||++|+|+++..||.                           ..+.+++.+|+..+|++ 
T Consensus       240 ~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~rl  319 (410)
T 3v8s_A          240 VLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRL  319 (410)
T ss_dssp             HHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCTTCCCCHHHHHHHHHHSSCGGGCT
T ss_pred             HhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccCCCcccccHHHHHHHHHHccChhhhC
Confidence            44 222    7789999999999999998887762                           34788999999988888 


Q ss_pred             -CCCHHHHHHH
Q 044320          131 -RPSMLEVARQ  140 (176)
Q Consensus       131 -Rp~~~~i~~~  140 (176)
                       ||++.++++.
T Consensus       320 gR~~~~ei~~H  330 (410)
T 3v8s_A          320 GRNGVEEIKRH  330 (410)
T ss_dssp             TSSCHHHHHTS
T ss_pred             CCCCHHHHhcC
Confidence             9999999864

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.92  E-value=6.7e-26  Score=181.96  Aligned_cols=126  Identities=15%  Similarity=0.180  Sum_probs=105.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      +..+++.+++.++.|++.||.|||+++   |+||||||+||+++.++.+||+|||+++.......  ....|+..+.+|+
T Consensus       283 ~~~l~e~~~~~~~~qi~~aL~~LH~~g---IvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE  359 (543)
T 3c4z_A          283 NPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPE  359 (543)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHcC---CcccCCChHHEEEeCCCCEEEeecceeeeccCCCcccccccCCccccChh
Confidence            457999999999999999999999999   99999999999999999999999999987554322  2234555555554


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      . .+..++.++|+||+||++|||+++..||.                           ..+.+++.+||..+|.+||++
T Consensus       360 ~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~  438 (543)
T 3c4z_A          360 LLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGF  438 (543)
T ss_dssp             HHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred             hhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccCCCcccCHHHHHHHHHhccCCHhHCCCC
Confidence            4 46678999999999999999988877652                           347889999999999999975

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.92  E-value=3.2e-26  Score=174.71  Aligned_cols=132  Identities=18%  Similarity=0.222  Sum_probs=105.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC----CCeEEeecCCcccCCCCC--CCCcccccee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK----FTPKVFDFEISRLAPVPN--INGVVGHVSI   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~----~~~~l~dfg~~~~~~~~~--~~~~~~~~~~   79 (176)
                      ...+++.++..++.|++.||.|||+++   ++||||||+||++...    +.+|++|||+++......  .....+...+
T Consensus       110 ~~~~~~~~~~~~~~qi~~al~~lH~~g---ivHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y  186 (342)
T 2qr7_A          110 QKFFSEREASAVLFTITKTVEYLHAQG---VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANF  186 (342)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---cEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccc
Confidence            456999999999999999999999999   9999999999998443    359999999997654322  1222344445


Q ss_pred             eecCCC-CCCCCcccchhhHhHHHHHHhccChHH------------------------------HHHHHHHHHhhcccCC
Q 044320           80 VVKGTH-TQQLTEKSDIYGLGIACLYMGLYSFEY------------------------------LKRFMSLALKYCEDET  128 (176)
Q Consensus        80 ~~~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------~~~l~~l~~~~~~~~p  128 (176)
                      .+|+.. ...++.++||||+||++|+|+++..||                              +..+.+++.+||..||
T Consensus       187 ~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  266 (342)
T 2qr7_A          187 VAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDP  266 (342)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHHHTCSST
T ss_pred             cCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHHHHHHHHCCCCh
Confidence            555443 445788999999999999998876654                              2357889999999999


Q ss_pred             CCCCCHHHHHHH
Q 044320          129 KARPSMLEVARQ  140 (176)
Q Consensus       129 ~~Rp~~~~i~~~  140 (176)
                      ++||++.++++.
T Consensus       267 ~~R~t~~~il~h  278 (342)
T 2qr7_A          267 HQRLTAALVLRH  278 (342)
T ss_dssp             TTSCCHHHHTTS
T ss_pred             hHCcCHHHHhcC
Confidence            999999998763

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.92  E-value=4.4e-26  Score=169.97  Aligned_cols=132  Identities=18%  Similarity=0.251  Sum_probs=108.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      +..+++.+++.++.|++.||.|||+++   ++|+||+|+||+++.++.++++|||.+.......  .....+...+.+|+
T Consensus       109 ~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  185 (294)
T 2rku_A          109 RKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPE  185 (294)
T ss_dssp             HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEcCCCCEEEEeccCceecccCccccccccCCCCcCCcc
Confidence            356899999999999999999999999   9999999999999999999999999987654322  11223344444443


Q ss_pred             C-CCCCCCcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           84 T-HTQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        84 ~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      . ....++.++|+||+|+++|++.++..+|                       ...+.+++.+||..+|++||++.++++
T Consensus       186 ~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~  265 (294)
T 2rku_A          186 VLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLN  265 (294)
T ss_dssp             HHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             hhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhccCCCccccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence            3 4566788999999999999998877664                       235889999999999999999999987


Q ss_pred             H
Q 044320          140 Q  140 (176)
Q Consensus       140 ~  140 (176)
                      .
T Consensus       266 ~  266 (294)
T 2rku_A          266 D  266 (294)
T ss_dssp             S
T ss_pred             C
Confidence            5

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.92  E-value=8.6e-26  Score=177.36  Aligned_cols=132  Identities=14%  Similarity=0.132  Sum_probs=109.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~   82 (176)
                      +..+++.+++.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||+++.......   ....|+..+.+|
T Consensus       169 ~~~l~e~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~AP  245 (437)
T 4aw2_A          169 EDRLPEEMARFYLAEMVIAIDSVHQLH---YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISP  245 (437)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCcccccccCCcCeeCh
Confidence            467999999999999999999999999   99999999999999999999999999976544322   223466666666


Q ss_pred             CCC------CCCCCcccchhhHhHHHHHHhccChHHH----------------------------HHHHHHHHhhcccCC
Q 044320           83 GTH------TQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------KRFMSLALKYCEDET  128 (176)
Q Consensus        83 ~~~------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------~~l~~l~~~~~~~~p  128 (176)
                      +..      ...++.++||||+||++|||+++..||.                            ..+.+++.+|+..+|
T Consensus       246 E~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dLi~~lL~~~~  325 (437)
T 4aw2_A          246 EILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLICSRE  325 (437)
T ss_dssp             HHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCSSCCCSCHHHHHHHHTTSSCGG
T ss_pred             HHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccCCcccccCCHHHHHHHHHHhcccc
Confidence            553      4568899999999999999998887752                            347789999998877


Q ss_pred             CC--CCCHHHHHHH
Q 044320          129 KA--RPSMLEVARQ  140 (176)
Q Consensus       129 ~~--Rp~~~~i~~~  140 (176)
                      +.  ||+++++++.
T Consensus       326 ~r~~r~~~~eil~H  339 (437)
T 4aw2_A          326 HRLGQNGIEDFKKH  339 (437)
T ss_dssp             GCTTTTTTHHHHTS
T ss_pred             cccCCCCHHHHhCC
Confidence            77  8999988763

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.92  E-value=6.2e-26  Score=177.00  Aligned_cols=131  Identities=16%  Similarity=0.116  Sum_probs=107.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~   82 (176)
                      +..+++..++.++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++.......   ....|+..+.+|
T Consensus       156 ~~~l~~~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~AP  232 (412)
T 2vd5_A          156 GERIPAEMARFYLAEIVMAIDSVHRLG---YVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSP  232 (412)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccCHHHeeecCCCCEEEeechhheeccCCCccccceeccccCcCCH
Confidence            357999999999999999999999999   99999999999999999999999999977654332   223456666666


Q ss_pred             CCC--------CCCCCcccchhhHhHHHHHHhccChHHH----------------------------HHHHHHHHhhccc
Q 044320           83 GTH--------TQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------KRFMSLALKYCED  126 (176)
Q Consensus        83 ~~~--------~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------~~l~~l~~~~~~~  126 (176)
                      +..        ...++.++|+|||||++|||+++..||.                            ..+.+++.+||. 
T Consensus       233 E~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dli~~lL~-  311 (412)
T 2vd5_A          233 EILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLC-  311 (412)
T ss_dssp             HHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC----CCCHHHHHHHHTTSS-
T ss_pred             HHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCcCCCccccCCCHHHHHHHHHHcC-
Confidence            543        3568899999999999999988877652                            247889999998 


Q ss_pred             CCCCC---CCHHHHHHH
Q 044320          127 ETKAR---PSMLEVARQ  140 (176)
Q Consensus       127 ~p~~R---p~~~~i~~~  140 (176)
                      +|++|   |+++++++.
T Consensus       312 ~p~~Rlgr~~~~ei~~H  328 (412)
T 2vd5_A          312 PPETRLGRGGAGDFRTH  328 (412)
T ss_dssp             CGGGCTTTTTHHHHHTS
T ss_pred             ChhhcCCCCCHHHHhcC
Confidence            99988   588888653

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.92  E-value=1.1e-25  Score=167.51  Aligned_cols=130  Identities=21%  Similarity=0.256  Sum_probs=104.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-CCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-KFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      ..+++..+..++.|++.||.|||+++   ++|+||+|+||+++. ++.++|+|||++.......  .....+...+.+|+
T Consensus       117 ~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE  193 (295)
T 2clq_A          117 LKDNEQTIGFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPE  193 (295)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCCHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHhCC---EEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccChh
Confidence            35778999999999999999999999   999999999999987 8999999999987654322  12223444455554


Q ss_pred             CC-C--CCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           84 TH-T--QQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        84 ~~-~--~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      .. .  ..++.++|+||||+++|++.++..||.                          ..+.+++.+||..+|++||++
T Consensus       194 ~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~  273 (295)
T 2clq_A          194 IIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACA  273 (295)
T ss_dssp             HHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCCCCCTTSCHHHHHHHHHTTCSSTTTSCCH
T ss_pred             hhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccccccccccccCCHHHHHHHHHHccCChhhCCCH
Confidence            43 2  347889999999999999988876652                          347889999999999999999


Q ss_pred             HHHHH
Q 044320          135 LEVAR  139 (176)
Q Consensus       135 ~~i~~  139 (176)
                      .++++
T Consensus       274 ~~ll~  278 (295)
T 2clq_A          274 NDLLV  278 (295)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            99875

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.92  E-value=1.6e-25  Score=166.93  Aligned_cols=131  Identities=21%  Similarity=0.266  Sum_probs=101.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----------------
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----------------   69 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----------------   69 (176)
                      +..+++.+++.++.|++.||+|||+++   ++|+||||+||+++.++.++++|||++.......                
T Consensus       110 ~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  186 (303)
T 1zy4_A          110 NLNQQRDEYWRLFRQILEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDN  186 (303)
T ss_dssp             CGGGCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCCCCCSCTTC------------------
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHhCC---eecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccc
Confidence            345788999999999999999999999   9999999999999999999999999987654211                


Q ss_pred             CCCccccceeeecCCC--CCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHh
Q 044320           70 INGVVGHVSIVVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALK  122 (176)
Q Consensus        70 ~~~~~~~~~~~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~  122 (176)
                      .....+...+.+|+..  ...++.++||||+|+++|++.+.....                         +..+.+++.+
T Consensus       187 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  266 (303)
T 1zy4_A          187 LTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVSIEFPPDFDDNKMKVEKKIIRL  266 (303)
T ss_dssp             -------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHSTTCCCCTTCCTTTSHHHHHHHHH
T ss_pred             cccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHhccCCchhHHHHHHhccccccccCccccccchHHHHHHHHH
Confidence            1112233344444443  246889999999999999998633221                         1237889999


Q ss_pred             hcccCCCCCCCHHHHHH
Q 044320          123 YCEDETKARPSMLEVAR  139 (176)
Q Consensus       123 ~~~~~p~~Rp~~~~i~~  139 (176)
                      ||..+|.+||++.++++
T Consensus       267 ~l~~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          267 LIDHDPNKRPGARTLLN  283 (303)
T ss_dssp             HTCSSGGGSCCHHHHHH
T ss_pred             HHhcCcccCcCHHHHhC
Confidence            99999999999999876

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.92  E-value=3.2e-26  Score=170.97  Aligned_cols=131  Identities=24%  Similarity=0.333  Sum_probs=104.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-------CCCccccce
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-------INGVVGHVS   78 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-------~~~~~~~~~   78 (176)
                      ...+++.+++.++.|++.||.|||+++   ++|+||+|+||+++.++.++++|||.+.......       .....+...
T Consensus       115 ~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  191 (303)
T 2vwi_A          115 SGVLDESTIATILREVLEGLEYLHKNG---QIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPC  191 (303)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCT
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCcc
Confidence            456999999999999999999999999   9999999999999999999999999886543221       111233444


Q ss_pred             eeecCCC--CCCCCcccchhhHhHHHHHHhccChHHH---------------------------------HHHHHHHHhh
Q 044320           79 IVVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------------KRFMSLALKY  123 (176)
Q Consensus        79 ~~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------------~~l~~l~~~~  123 (176)
                      +.+|+..  ...++.++||||||+++|++.++..||.                                 ..+.+++.+|
T Consensus       192 y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  271 (303)
T 2vwi_A          192 WMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLC  271 (303)
T ss_dssp             TCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHHHHH
T ss_pred             ccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccccccchhhhhhhHHHHHHHHHH
Confidence            4444443  2457899999999999999988776652                                 3478899999


Q ss_pred             cccCCCCCCCHHHHHH
Q 044320          124 CEDETKARPSMLEVAR  139 (176)
Q Consensus       124 ~~~~p~~Rp~~~~i~~  139 (176)
                      |..+|.+||++.++++
T Consensus       272 l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          272 LQKDPEKRPTAAELLR  287 (303)
T ss_dssp             CCSSGGGSCCHHHHHT
T ss_pred             ccCChhhCcCHHHHhh
Confidence            9999999999999876

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.92  E-value=1e-25  Score=166.43  Aligned_cols=131  Identities=15%  Similarity=0.258  Sum_probs=103.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCccccceeeecCCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVVKGTH   85 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~~~~   85 (176)
                      ..+++.+++.++.|++.||.|||+++   ++|+||+|+||+++.++.++++|||++........ ....+...+.+|+..
T Consensus       106 ~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~  182 (276)
T 2h6d_A          106 GRVEEMEARRLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVI  182 (276)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHHHHC---SSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-------------CCTGGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChhhEEECCCCCEEEeecccccccCCCcceecccCCccccCHHHH
Confidence            46899999999999999999999999   99999999999999999999999999877554322 122344455555544


Q ss_pred             -CCCC-CcccchhhHhHHHHHHhccChHH-----------------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320           86 -TQQL-TEKSDIYGLGIACLYMGLYSFEY-----------------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus        86 -~~~~-~~~~Dv~s~G~~l~~l~~~~~~~-----------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                       ...+ +.++|+||+|+++|++.++..||                       ...+.+++.+||..+|.+||++.++++.
T Consensus       183 ~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          183 SGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             cCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcccCchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence             3333 57999999999999998876654                       2458899999999999999999999874

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.92  E-value=1.6e-25  Score=167.06  Aligned_cols=131  Identities=21%  Similarity=0.218  Sum_probs=107.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~~   84 (176)
                      +..+++.+++.++.|++.||.|||+++   ++|+||+|+||+++.++.++++|||.+....... .....+...+.+|+.
T Consensus       118 ~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~  194 (298)
T 1phk_A          118 KVTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEI  194 (298)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEEcCCCcEEEecccchhhcCCCcccccccCCccccCHHH
Confidence            356899999999999999999999999   9999999999999999999999999987654332 222234444544443


Q ss_pred             C-------CCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCC
Q 044320           85 H-------TQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKA  130 (176)
Q Consensus        85 ~-------~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~  130 (176)
                      .       ...++.++|+||+|+++|++.++..+|                           +..+.+++.+||..+|.+
T Consensus       195 ~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  274 (298)
T 1phk_A          195 IECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQK  274 (298)
T ss_dssp             HHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGG
T ss_pred             hccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCCcccCcccccccCHHHHHHHHHHccCCccc
Confidence            2       456788999999999999998876543                           345889999999999999


Q ss_pred             CCCHHHHHH
Q 044320          131 RPSMLEVAR  139 (176)
Q Consensus       131 Rp~~~~i~~  139 (176)
                      ||++.++++
T Consensus       275 Rps~~~ll~  283 (298)
T 1phk_A          275 RYTAEEALA  283 (298)
T ss_dssp             SCCHHHHTT
T ss_pred             CCCHHHHHh
Confidence            999998875

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.92  E-value=2.5e-25  Score=174.62  Aligned_cols=130  Identities=22%  Similarity=0.234  Sum_probs=99.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-----CCCeEEeecCCcccCCCCC-----CCCcccc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-----KFTPKVFDFEISRLAPVPN-----INGVVGH   76 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-----~~~~~l~dfg~~~~~~~~~-----~~~~~~~   76 (176)
                      ..++..+++.++.|++.||.|||+++   ++||||||+||+++.     ...++|+|||+++......     .....|.
T Consensus       113 ~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt  189 (432)
T 3p23_A          113 FAHLGLEPITLLQQTTSGLAHLHSLN---IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGT  189 (432)
T ss_dssp             CCCCSSCHHHHHHHHHHHHHHHHHTT---CCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSC
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHCc---CEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCC
Confidence            34555677899999999999999999   999999999999943     2367899999987654321     1223455


Q ss_pred             ceeeecCCC----CCCCCcccchhhHhHHHHHHhc-cChHHH--------------------------HHHHHHHHhhcc
Q 044320           77 VSIVVKGTH----TQQLTEKSDIYGLGIACLYMGL-YSFEYL--------------------------KRFMSLALKYCE  125 (176)
Q Consensus        77 ~~~~~~~~~----~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~--------------------------~~l~~l~~~~~~  125 (176)
                      ..+.+|+..    ...++.++||||+||++|++++ +..||.                          ..+.+++.+||.
T Consensus       190 ~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~  269 (432)
T 3p23_A          190 EGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIEKMIA  269 (432)
T ss_dssp             TTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHHTTCCCCTTSCTTCHHHHHHHHHHHHHSC
T ss_pred             cCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHhccCCccccCccccccHHHHHHHHHHHh
Confidence            666666654    3566779999999999999988 665542                          236789999999


Q ss_pred             cCCCCCCCHHHHHH
Q 044320          126 DETKARPSMLEVAR  139 (176)
Q Consensus       126 ~~p~~Rp~~~~i~~  139 (176)
                      .+|.+||++.++++
T Consensus       270 ~dP~~Rps~~evl~  283 (432)
T 3p23_A          270 MDPQKRPSAKHVLK  283 (432)
T ss_dssp             SSGGGSCCHHHHHT
T ss_pred             CCHhhCCCHHHHHh
Confidence            99999999999973

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.92  E-value=2.6e-25  Score=165.39  Aligned_cols=130  Identities=21%  Similarity=0.244  Sum_probs=107.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC---CCeEEeecCCcccCCCCCC-CCccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK---FTPKVFDFEISRLAPVPNI-NGVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~---~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~   82 (176)
                      ..+++.+++.++.|++.||.|||+++   ++|+||+|+||+++.+   +.++++|||++........ ....+...+.+|
T Consensus       116 ~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aP  192 (287)
T 2wei_A          116 KRFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAP  192 (287)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSCHHHHHTTCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCChhhEEEecCCCcccEEEeccCcceeecCCCccccccCcccccCh
Confidence            46899999999999999999999999   9999999999999764   4699999999876544332 222344455566


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhccChHH---------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      +.....++.++|+||+|+++|++.++..||                           +..+.+++.+||..+|.+||++.
T Consensus       193 E~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~  272 (287)
T 2wei_A          193 EVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITAT  272 (287)
T ss_dssp             HHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHhcCCCCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhhCcCHH
Confidence            555566899999999999999998776553                           24588999999999999999999


Q ss_pred             HHHH
Q 044320          136 EVAR  139 (176)
Q Consensus       136 ~i~~  139 (176)
                      ++++
T Consensus       273 ell~  276 (287)
T 2wei_A          273 QCLE  276 (287)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9987

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.92  E-value=4.9e-26  Score=170.11  Aligned_cols=131  Identities=21%  Similarity=0.273  Sum_probs=104.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCC--CCCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP--NINGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~~~~   83 (176)
                      ...+++.+++.++.|++.||.|||+.+   ++|+||+|+||+++.++.++++|||++......  ......+...+.+|+
T Consensus       111 ~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE  187 (302)
T 2j7t_A          111 DRGLTEPQIQVVCRQMLEALNFLHSKR---IIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPE  187 (302)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-----CCGGGCCHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHHHEEECCCCCEEEEECCCCccccccccccccccCChhhcCCe
Confidence            466999999999999999999999999   999999999999999999999999986432111  111123344444444


Q ss_pred             C------CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCC
Q 044320           84 T------HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        84 ~------~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                      .      ....++.++||||||+++|++.++..||.                          ..+.+++.+||..+|.+|
T Consensus       188 ~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R  267 (302)
T 2j7t_A          188 VVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETR  267 (302)
T ss_dssp             HHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSCTTTS
T ss_pred             eeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcccCCccccCHHHHHHHHHHcccChhhC
Confidence            3      25668899999999999999988766542                          357899999999999999


Q ss_pred             CCHHHHHH
Q 044320          132 PSMLEVAR  139 (176)
Q Consensus       132 p~~~~i~~  139 (176)
                      |++.++++
T Consensus       268 ps~~~ll~  275 (302)
T 2j7t_A          268 PSAAQLLE  275 (302)
T ss_dssp             CCHHHHTT
T ss_pred             CCHHHHhc
Confidence            99998865

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.92  E-value=3.5e-26  Score=169.13  Aligned_cols=137  Identities=20%  Similarity=0.249  Sum_probs=105.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCC--CCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC--Cccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEA--DPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN--GVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~--~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~   81 (176)
                      +..+++.+++.++.|++.||+|||+.+  ..+++|+||+|+||+++.++.++|+|||.+.........  ...+...+.+
T Consensus       105 ~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~a  184 (279)
T 2w5a_A          105 RQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMS  184 (279)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHHHHHHHSCCTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeeccccccccccCCCccccC
Confidence            455999999999999999999999865  234999999999999999999999999998765433211  1123333333


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      |+ .....++.++||||||+++|++.++..||                        +..+.+++.+||..+|.+||++.+
T Consensus       185 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  264 (279)
T 2w5a_A          185 PEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEE  264 (279)
T ss_dssp             HHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhcccccCCcccCHHHHHHHHHHcCCCcccCCCHHH
Confidence            33 33567889999999999999998876553                        246889999999999999999999


Q ss_pred             HHHHHH
Q 044320          137 VARQLE  142 (176)
Q Consensus       137 i~~~l~  142 (176)
                      +++.+.
T Consensus       265 ll~~~~  270 (279)
T 2w5a_A          265 ILENPL  270 (279)
T ss_dssp             HHTSTT
T ss_pred             HHhChh
Confidence            998654

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.91  E-value=1.4e-25  Score=176.09  Aligned_cols=126  Identities=21%  Similarity=0.308  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-------------CCeEEeecCCcccCCCCCC------C
Q 044320           11 LAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-------------FTPKVFDFEISRLAPVPNI------N   71 (176)
Q Consensus        11 ~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-------------~~~~l~dfg~~~~~~~~~~------~   71 (176)
                      +.+++.++.|++.||+|||+++   ++||||||+||+++..             +.++|+|||+++.......      .
T Consensus       114 ~~~~~~i~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~  190 (434)
T 2rio_A          114 EYNPISLLRQIASGVAHLHSLK---IIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLN  190 (434)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC----------
T ss_pred             chhHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeec
Confidence            3456789999999999999999   9999999999999653             4799999999987654321      1


Q ss_pred             CccccceeeecCCC--------CCCCCcccchhhHhHHHHHHhc-cChHH----------------------------HH
Q 044320           72 GVVGHVSIVVKGTH--------TQQLTEKSDIYGLGIACLYMGL-YSFEY----------------------------LK  114 (176)
Q Consensus        72 ~~~~~~~~~~~~~~--------~~~~~~~~Dv~s~G~~l~~l~~-~~~~~----------------------------~~  114 (176)
                      ...|...+.+|+..        ...++.++|||||||++|+|++ +..||                            +.
T Consensus       191 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  270 (434)
T 2rio_A          191 NPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIA  270 (434)
T ss_dssp             ----CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHHHHHHTCCCCCCCTTCCCHHHHH
T ss_pred             CCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHHHHhcCCCCcccccccccccchH
Confidence            22344445554433        2568899999999999999987 65554                            24


Q ss_pred             HHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          115 RFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       115 ~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      .+.+++.+||..+|.+||++.++++
T Consensus       271 ~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          271 EATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHHhhCChhhCCCHHHHHh
Confidence            6889999999999999999999875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.91  E-value=1.4e-24  Score=178.80  Aligned_cols=134  Identities=17%  Similarity=0.196  Sum_probs=108.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      ...+++.+++.++.|++.||.|||+++   |+||||||+||+++.+ .+||+|||+++.....  ....|+..+.+|+..
T Consensus       176 ~~~l~~~~~~~~~~qi~~aL~~lH~~g---iiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~--~~~~gt~~y~aPE~~  249 (681)
T 2pzi_A          176 GQKLPVAEAIAYLLEILPALSYLHSIG---LVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF--GYLYGTPGFQAPEIV  249 (681)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECSS-CEEECCCTTCEETTCC--SCCCCCTTTSCTTHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHCC---CeecccChHHeEEeCC-cEEEEecccchhcccC--CccCCCccccCHHHH
Confidence            347999999999999999999999999   9999999999999875 8999999999876544  233455666666665


Q ss_pred             CCCCCcccchhhHhHHHHHHhccChHH-----------------HHHHHHHHHhhcccCCCCCCC-HHHHHHHHHhhh
Q 044320           86 TQQLTEKSDIYGLGIACLYMGLYSFEY-----------------LKRFMSLALKYCEDETKARPS-MLEVARQLENIS  145 (176)
Q Consensus        86 ~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------~~~l~~l~~~~~~~~p~~Rp~-~~~i~~~l~~~~  145 (176)
                      ....+.++||||||+++|+|.++..++                 ...+.+++.+||..+|.+||+ ++++...|..+.
T Consensus       250 ~~~~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  327 (681)
T 2pzi_A          250 RTGPTVATDIYTVGRTLAALTLDLPTRNGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVL  327 (681)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHHSCCCEETTEECSSCCTTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             cCCCCCceehhhhHHHHHHHHhCCCCCcccccccccccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHH
Confidence            445688999999999999997665432                 246889999999999999995 666666666543

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.90  E-value=7.4e-24  Score=157.88  Aligned_cols=113  Identities=10%  Similarity=0.025  Sum_probs=96.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCCCCC
Q 044320            9 VSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHTQQ   88 (176)
Q Consensus         9 l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (176)
                      ....++..++.|++.||+|||+++   ++||||||+||+++.++.+++++++..                        ..
T Consensus       126 ~~~~~~~~i~~ql~~aL~~lH~~g---ivH~Dikp~NIll~~~g~~kl~~~~~~------------------------~~  178 (286)
T 3uqc_A          126 PSPVGAIRAMQSLAAAADAAHRAG---VALSIDHPSRVRVSIDGDVVLAYPATM------------------------PD  178 (286)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEETTSCEEECSCCCC------------------------TT
T ss_pred             CChHHHHHHHHHHHHHHHHHHHCC---CccCCCCcccEEEcCCCCEEEEecccc------------------------CC
Confidence            466688999999999999999999   999999999999999999999865432                        13


Q ss_pred             CCcccchhhHhHHHHHHhccChHH------------------------------HHHHHHHHHhhcccCCCCCCCHHHHH
Q 044320           89 LTEKSDIYGLGIACLYMGLYSFEY------------------------------LKRFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        89 ~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                      ++.++||||||+++|+|+++..||                              +..+.+++.+||..||.+| |+.+++
T Consensus       179 ~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~  257 (286)
T 3uqc_A          179 ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLL  257 (286)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHH
Confidence            688999999999999997776554                              2358999999999999999 999999


Q ss_pred             HHHHhhhhcCC
Q 044320          139 RQLENISSMLP  149 (176)
Q Consensus       139 ~~l~~~~~~~~  149 (176)
                      +.|+.+.....
T Consensus       258 ~~L~~~~~~~~  268 (286)
T 3uqc_A          258 NLMQQATAVAD  268 (286)
T ss_dssp             HHHHHHHC---
T ss_pred             HHHHHHhccCC
Confidence            99999877643

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.90  E-value=1.2e-23  Score=171.78  Aligned_cols=138  Identities=15%  Similarity=0.175  Sum_probs=108.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCC---eEEeecCCcccCCCCCC-CCccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFT---PKVFDFEISRLAPVPNI-NGVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~---~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~   82 (176)
                      ..+++.+++.++.|++.||.|||+.+   ++||||||+||+++.++.   ++++|||.+........ ....+...+.+|
T Consensus       116 ~~lse~~i~~I~~QLl~aL~yLHs~g---IVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~AP  192 (676)
T 3qa8_A          116 CGLKEGPIRTLLSDISSALRYLHENR---IIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAP  192 (676)
T ss_dssp             TCCCSSHHHHHHHHHHHHHHHHHHTT---BCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCCCCCCCSCCTTCSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEeecCCCceeEEEcccccccccccccccccccCCcccCCh
Confidence            46999999999999999999999999   999999999999987654   89999999987654332 223344444444


Q ss_pred             CC-CCCCCCcccchhhHhHHHHHHhccChHH-----------------------------------------------HH
Q 044320           83 GT-HTQQLTEKSDIYGLGIACLYMGLYSFEY-----------------------------------------------LK  114 (176)
Q Consensus        83 ~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-----------------------------------------------~~  114 (176)
                      +. .+..++.++||||+|+++|++.++..||                                               +.
T Consensus       193 E~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~  272 (676)
T 3qa8_A          193 ELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAG  272 (676)
T ss_dssp             CSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHH
T ss_pred             HHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhH
Confidence            44 4678899999999999999998886664                                               35


Q ss_pred             HHHHHHHhhcccCCCCCCCHHH-----HHHHHHhhhhc
Q 044320          115 RFMSLALKYCEDETKARPSMLE-----VARQLENISSM  147 (176)
Q Consensus       115 ~l~~l~~~~~~~~p~~Rp~~~~-----i~~~l~~~~~~  147 (176)
                      .+.+++.+||..+|++||++.+     ..+.++.+...
T Consensus       273 ~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~~  310 (676)
T 3qa8_A          273 KLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILSL  310 (676)
T ss_dssp             HHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHHCC
T ss_pred             HHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHHhc
Confidence            6899999999999999999876     45556655554

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.85  E-value=1.6e-21  Score=147.93  Aligned_cols=103  Identities=21%  Similarity=0.087  Sum_probs=82.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHh-cCCCCCeEecCCCCCCeEeCCCC--------------------CeEEeecCCccc
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLH-TEADPPIIHWDIKATNTLLDSKF--------------------TPKVFDFEISRL   64 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh-~~~~~~~vH~dl~~~nil~~~~~--------------------~~~l~dfg~~~~   64 (176)
                      +..+++.+++.++.|++.||.||| +++   |+||||||+|||++.++                    .+||+|||+++.
T Consensus       155 ~~~~~~~~~~~i~~qi~~aL~~lH~~~~---ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~  231 (336)
T 2vuw_A          155 TKLSSLATAKSILHQLTASLAVAEASLR---FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRL  231 (336)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHHHC---CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBE
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHhCC---EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEe
Confidence            356899999999999999999999 899   99999999999998876                    899999999987


Q ss_pred             CCCCCCCCccccceeeecCCCCCCCCcccchhhHhHH-HHHHhccChHHHH
Q 044320           65 APVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIA-CLYMGLYSFEYLK  114 (176)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~s~G~~-l~~l~~~~~~~~~  114 (176)
                      .....   ..|+..+.+|+...+..+.++||||+++. .+++..+..||..
T Consensus       232 ~~~~~---~~gt~~y~aPE~~~g~~~~~~Diwsl~~~~~~~~~~g~~p~~~  279 (336)
T 2vuw_A          232 ERDGI---VVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSN  279 (336)
T ss_dssp             EETTE---EECCCCTTCSGGGCCCSSHHHHHHHHHHHHHTTCTTSCCTHHH
T ss_pred             cCCCc---EEEeecccChhhhcCCCccceehhhhhCCCCcccccccCCCcc
Confidence            55432   24455566666655555889999998776 5666667667654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.78  E-value=6.7e-20  Score=148.15  Aligned_cols=101  Identities=12%  Similarity=0.118  Sum_probs=65.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~   83 (176)
                      +.+++..   .|+.||+.||+|+|++|   ||||||||+|||++.+|.+||+|||+++.......  ....|+..+.+++
T Consensus       336 ~~~l~~~---~I~~QIl~AL~ylH~~G---IIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE  409 (569)
T 4azs_A          336 GEEIDRE---KILGSLLRSLAALEKQG---FWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNE  409 (569)
T ss_dssp             TCCCCHH---HHHHHHHHHHHHHHHTT---CEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHH
T ss_pred             CCCCCHH---HHHHHHHHHHHHHHHCC---ceeccCchHhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHH
Confidence            4556654   47899999999999999   99999999999999999999999999987654432  2234667777777


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHH
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEY  112 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~  112 (176)
                      ...+.+..++|+||+|+.++++..+..++
T Consensus       410 ~l~g~~~~~~d~~s~g~~~~~l~~~~~~~  438 (569)
T 4azs_A          410 LFAENKSWNGFWRSAPVHPFNLPQPWSNW  438 (569)
T ss_dssp             HC-----------------CCCCTTHHHH
T ss_pred             HhCCCCCCcccccccccchhhhccccchh
Confidence            77677788999999999988776655444

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.26  E-value=3.9e-13  Score=108.09  Aligned_cols=49  Identities=27%  Similarity=0.487  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCC
Q 044320           14 RLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPV   67 (176)
Q Consensus        14 ~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~   67 (176)
                      +..++.|++.||.|||+++   |+||||||+||+++.  .+||+|||+++....
T Consensus       433 ~~~i~~qi~~aL~~LH~~g---IiHrDiKp~NILl~~--~~kL~DFGla~~~~~  481 (540)
T 3en9_A          433 NLDIAYKIGEIVGKLHKND---VIHNDLTTSNFIFDK--DLYIIDFGLGKISNL  481 (540)
T ss_dssp             CTHHHHHHHHHHHHHHHTT---EECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred             HHHHHHHHHHHHHHHHHCc---CccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence            4588999999999999999   999999999999998  999999999987654

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.24  E-value=8.5e-12  Score=92.53  Aligned_cols=51  Identities=18%  Similarity=0.109  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCC
Q 044320           12 AMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAP   66 (176)
Q Consensus        12 ~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~   66 (176)
                      .+...++.|++.||.|+|+.+   ++||||||.||+++ ++.++|+|||++....
T Consensus       193 ~~~~~i~~qi~~~l~~lH~~g---iiHrDlkp~NILl~-~~~vkl~DFG~a~~~~  243 (282)
T 1zar_A          193 ENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLVS-EEGIWIIDFPQSVEVG  243 (282)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEE-TTEEEECCCTTCEETT
T ss_pred             hhHHHHHHHHHHHHHHHHHCC---CEeCCCCHHHEEEE-CCcEEEEECCCCeECC
Confidence            456689999999999999999   99999999999999 9999999999987543

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.18  E-value=2e-11  Score=89.36  Aligned_cols=50  Identities=14%  Similarity=0.046  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHh-cCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccC
Q 044320           11 LAMRLHIALGLAEGILYLH-TEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA   65 (176)
Q Consensus        11 ~~~~~~i~~~i~~~l~~lh-~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~   65 (176)
                      +.++..++.|++.||.||| +.+   ++||||||.||+++.  .++++|||++...
T Consensus       169 ~~~~~~i~~qi~~~l~~lH~~~g---ivHrDlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          169 ELDVEGIFNDVVENVKRLYQEAE---LVHADLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHTSC---EECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred             hHHHHHHHHHHHHHHHHHHHHCC---EEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence            3467899999999999999 999   999999999999988  8999999998654

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.64  E-value=2.7e-08  Score=76.75  Aligned_cols=53  Identities=23%  Similarity=0.209  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC----------CeEEeecCCcccCCC
Q 044320           12 AMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF----------TPKVFDFEISRLAPV   67 (176)
Q Consensus        12 ~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~----------~~~l~dfg~~~~~~~   67 (176)
                      ++...++.|++.+|.++|+.|   +|||||||.|||++.++          .+.++||+-+-...+
T Consensus       205 ~~~~~l~~qll~~l~~lH~~g---IVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~h  267 (397)
T 4gyi_A          205 PDPASLYADLIALILRLAKHG---LIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSMDH  267 (397)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEETTS
T ss_pred             HHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCcccCCC
Confidence            345678899999999999999   99999999999998766          378999987654433

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.64  E-value=3.6e-05  Score=57.15  Aligned_cols=87  Identities=15%  Similarity=0.152  Sum_probs=51.7

Q ss_pred             CCeEecCCCCCCeEeCC--CCCeEEeecCCcccCCCCC----CCCc---cccc-------eeeecC--CCCCCCCcccch
Q 044320           34 PPIIHWDIKATNTLLDS--KFTPKVFDFEISRLAPVPN----INGV---VGHV-------SIVVKG--THTQQLTEKSDI   95 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~----~~~~---~~~~-------~~~~~~--~~~~~~~~~~Dv   95 (176)
                      +.++|+|+++.||+++.  ...+.++||+.+.....-.    ....   .+..       .|....  ........-.+.
T Consensus       191 ~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~r~~~~~~~  270 (304)
T 3sg8_A          191 PCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKEKY  270 (304)
T ss_dssp             CEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             ceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence            35899999999999987  4567899999875432100    0000   0000       000000  000000112588


Q ss_pred             hhHhHHHHHHhccChHHHHHHHHHH
Q 044320           96 YGLGIACLYMGLYSFEYLKRFMSLA  120 (176)
Q Consensus        96 ~s~G~~l~~l~~~~~~~~~~l~~l~  120 (176)
                      |+++.++|.+.++..++...-...+
T Consensus       271 ~~l~~~~~~~~~g~~~~~~~g~~~~  295 (304)
T 3sg8_A          271 WSFEKIIYGKEYGYMDWYEEGLNEI  295 (304)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999887655444

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.62  E-value=0.00013  Score=55.33  Aligned_cols=57  Identities=28%  Similarity=0.294  Sum_probs=46.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCC-------------------------------------------------------
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEA-------------------------------------------------------   32 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~-------------------------------------------------------   32 (176)
                      .++..+...++.+++..|..+|+..                                                       
T Consensus       135 ~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  214 (359)
T 3dxp_A          135 GMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDAD  214 (359)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSS
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCccCC
Confidence            4678888999999999999999731                                                       


Q ss_pred             CCCeEecCCCCCCeEeCCCCC--eEEeecCCccc
Q 044320           33 DPPIIHWDIKATNTLLDSKFT--PKVFDFEISRL   64 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~~~--~~l~dfg~~~~   64 (176)
                      ...++|+|+++.||+++.++.  +.++||+.+..
T Consensus       215 ~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          215 LTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             CCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             CceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence            135999999999999987653  68999998754

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.51  E-value=5.4e-05  Score=54.77  Aligned_cols=29  Identities=17%  Similarity=0.167  Sum_probs=24.3

Q ss_pred             CCeEecCCCCCCeEeCCCCCeEEeecCCc
Q 044320           34 PPIIHWDIKATNTLLDSKFTPKVFDFEIS   62 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~~~~l~dfg~~   62 (176)
                      ..++|+|+++.||+++.++.+.++||+.+
T Consensus       183 ~~l~HgDl~~~Nil~~~~~~~~lIDwe~a  211 (263)
T 3tm0_A          183 LVFSHGDLGDSNIFVKDGKVSGFIDLGRS  211 (263)
T ss_dssp             EEEECSSCCTTSEEEETTEEEEECCCTTC
T ss_pred             ceEECCCCCcCcEEEECCcEEEEEEchhc
Confidence            34899999999999987656679999865

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.43  E-value=9.4e-05  Score=53.12  Aligned_cols=27  Identities=15%  Similarity=0.106  Sum_probs=24.0

Q ss_pred             eEecCCCCCCeEeCCCCCeEEeecCCc
Q 044320           36 IIHWDIKATNTLLDSKFTPKVFDFEIS   62 (176)
Q Consensus        36 ~vH~dl~~~nil~~~~~~~~l~dfg~~   62 (176)
                      ++|+|++|.||+++.++.+.++||+.+
T Consensus       186 l~HgDl~~~Nil~~~~~~~~liD~~~a  212 (264)
T 1nd4_A          186 VTHGDACLPNIMVENGRFSGFIDCGRL  212 (264)
T ss_dssp             EECSSCCGGGEEEETTEEEEECCCTTC
T ss_pred             EECCCCCCCcEEEECCcEEEEEcchhc
Confidence            999999999999987766679999976

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=97.40  E-value=0.0026  Score=45.04  Aligned_cols=128  Identities=12%  Similarity=0.005  Sum_probs=79.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT   84 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~   84 (176)
                      .+.+|+++++|.++.|.+.+|.-+-.+..  -..+-..+..|++..+|.+.+.+ ..+.     .     ....+.++..
T Consensus        42 ~~~PlsEEqaWALc~Qc~~~L~~~~~~~~--~~~~i~~~~~i~l~~dG~V~f~~-~~s~-----~-----~~~~~~~pe~  108 (229)
T 2yle_A           42 YNQPINEEQAWAVCYQCCGSLRAAARRRQ--PRHRVRSAAQIRVWRDGAVTLAP-AADD-----A-----GEPPPVAGKL  108 (229)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHTTC--CCCCCCSGGGEEEETTSCEEECC-C----------------------CC
T ss_pred             cCCCcCHHHHHHHHHHHHHHHHhhhhccc--CCceecCCcceEEecCCceeccc-cccc-----c-----cccCCCChhh
Confidence            46789999999999999999877632111  11233456888999999887664 1110     0     0011112222


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChH------HHHHHHHHHHhhccc-------------------------CCCCCCC
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFE------YLKRFMSLALKYCED-------------------------ETKARPS  133 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~------~~~~l~~l~~~~~~~-------------------------~p~~Rp~  133 (176)
                      .....+.+.=|||+|+++|.-+....+      ..+.|.+|+..|...                         .+..|++
T Consensus       109 ~~~~~te~~~IysLG~tLY~ALDygL~e~eE~eLS~~LE~LL~~Mt~~~~d~~~~DeG~~~~~eg~~d~~~~~~~~~~~s  188 (229)
T 2yle_A          109 GYSQCMETEVIESLGIIIYKALDYGLKENEERELSPPLEQLIDHMANTVEADGSNDEGYEAAEEGLGDEDEKRKISAIRS  188 (229)
T ss_dssp             SSSSSCHHHHHHHHHHHHHHHHTTTCCTTEEECCCHHHHHHHHHHTTCCC--------------------CCSCCCCCCS
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCcccchhhCHHHHHHHHHHHhcccccccccccccccccccccccccccccCcCC
Confidence            223445678899999999977554433      345677777776544                         3467889


Q ss_pred             HHHHHHHHHhhh
Q 044320          134 MLEVARQLENIS  145 (176)
Q Consensus       134 ~~~i~~~l~~~~  145 (176)
                      +.+|++.-....
T Consensus       189 l~~Vi~~C~~hl  200 (229)
T 2yle_A          189 YRDVMKLCAAHL  200 (229)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhc
Confidence            999888777443

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=96.50  E-value=0.0049  Score=45.90  Aligned_cols=30  Identities=30%  Similarity=0.351  Sum_probs=26.4

Q ss_pred             CCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           34 PPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      ..++|+|+++.||+++.++.+.++||+.+.
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            349999999999999877889999998764

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=95.78  E-value=0.012  Score=45.46  Aligned_cols=30  Identities=23%  Similarity=0.339  Sum_probs=25.7

Q ss_pred             CCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           34 PPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      ..++|+|+++.||+++.++ +.++||+.+..
T Consensus       232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~  261 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFY  261 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             CeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence            3499999999999998776 99999987743

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=95.63  E-value=0.023  Score=42.02  Aligned_cols=31  Identities=23%  Similarity=0.411  Sum_probs=24.9

Q ss_pred             CCeEecCCCCCCeEeCC---CCC-eEEeecCCccc
Q 044320           34 PPIIHWDIKATNTLLDS---KFT-PKVFDFEISRL   64 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~---~~~-~~l~dfg~~~~   64 (176)
                      +.++|+|+++.|++++.   ++. +.++||+.+..
T Consensus       190 ~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          190 PRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             CEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             CeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence            34899999999999987   355 47999987644

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=94.71  E-value=0.056  Score=40.24  Aligned_cols=32  Identities=31%  Similarity=0.392  Sum_probs=26.5

Q ss_pred             CCCeEecCCCCCCeEeCCC----CCeEEeecCCccc
Q 044320           33 DPPIIHWDIKATNTLLDSK----FTPKVFDFEISRL   64 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~----~~~~l~dfg~~~~   64 (176)
                      ...++|+|+.+.||+++.+    +.+.++||+.+..
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            3459999999999999874    6789999987654

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=94.63  E-value=0.016  Score=41.74  Aligned_cols=29  Identities=17%  Similarity=0.141  Sum_probs=24.9

Q ss_pred             CCeEecCCCCCCeEeCCCCCeEEeecCCc
Q 044320           34 PPIIHWDIKATNTLLDSKFTPKVFDFEIS   62 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~~~~l~dfg~~   62 (176)
                      ..++|+|+.+.||+++.++.+-|+||+.+
T Consensus       193 ~~l~HGDl~~~Nil~~~~~~~~viDwe~a  221 (272)
T 4gkh_A          193 SVVTHGDFSLDNLIFDEGKLIGCIDVGRV  221 (272)
T ss_dssp             EEEECSCCCTTSEEEETTEEEEECCCTTC
T ss_pred             cEEEcCCCCCCeEEEECCeEEEEEECccc
Confidence            35899999999999988777779999866

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=93.60  E-value=0.022  Score=42.84  Aligned_cols=30  Identities=23%  Similarity=0.339  Sum_probs=24.7

Q ss_pred             CCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           34 PPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      ..++|+|+.+.||+++.+..+.++||+.+.
T Consensus       222 ~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~  251 (357)
T 3ats_A          222 PVLLWGDARVGNVLYRDFQPVAVLDWEMVA  251 (357)
T ss_dssp             CEEECSSCSGGGEEEETTEEEEECCGGGCE
T ss_pred             ceEEeCCCCCCeEEEeCCcEEEEEcccccc
Confidence            349999999999999864457899998764

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=93.43  E-value=0.028  Score=41.54  Aligned_cols=29  Identities=21%  Similarity=0.259  Sum_probs=24.8

Q ss_pred             CeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           35 PIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        35 ~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      .++|+|+.+.||+++.++.+.++||+.+.
T Consensus       188 ~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          188 GVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             EEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             ccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            49999999999999877666899998664

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=93.26  E-value=0.12  Score=38.22  Aligned_cols=29  Identities=28%  Similarity=0.280  Sum_probs=24.3

Q ss_pred             CCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           34 PPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      ..++|+|+++.||+++ + .+.++||+.+..
T Consensus       195 ~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          195 VLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             CEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             eeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            3489999999999998 4 789999987643

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=92.58  E-value=0.14  Score=40.19  Aligned_cols=16  Identities=19%  Similarity=0.279  Sum_probs=14.6

Q ss_pred             CCeEecCCCCCCeEeC
Q 044320           34 PPIIHWDIKATNTLLD   49 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~   49 (176)
                      ..++|+|+.+.||+++
T Consensus       290 ~v~cHnDl~~gNIL~~  305 (458)
T 2qg7_A          290 IVLCHCDLLSSNIINT  305 (458)
T ss_dssp             EEEECSCCCGGGEEEC
T ss_pred             eeEEecCCCCCcEEee
Confidence            4599999999999998

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=92.25  E-value=0.069  Score=40.79  Aligned_cols=29  Identities=24%  Similarity=0.339  Sum_probs=24.1

Q ss_pred             CCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           34 PPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      ..++|+|+.+.||+++.+ .+.++||..+.
T Consensus       227 ~~L~HGDl~~~Nil~~~~-~~~lID~e~a~  255 (397)
T 2olc_A          227 ETLIHGDLHTGSIFASEH-ETKVIDPEFAF  255 (397)
T ss_dssp             CEEECSCCSGGGEEECSS-CEEECCCTTCE
T ss_pred             CceeeCCCCcCcEEEeCC-CeEEEeCcccc
Confidence            349999999999999765 48899997664

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=92.23  E-value=0.13  Score=38.51  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=26.6

Q ss_pred             CCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           34 PPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      ..++|+|+.+.|++++.++.+.++||+.+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            3599999999999998878899999976643

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=92.05  E-value=0.083  Score=39.94  Aligned_cols=29  Identities=28%  Similarity=0.377  Sum_probs=23.8

Q ss_pred             CCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           34 PPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      ..++|+|+.+.||+++.++ +.++||..+.
T Consensus       212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~  240 (369)
T 3c5i_A          212 IVFCHNDLQENNIINTNKC-LRLIDFEYSG  240 (369)
T ss_dssp             EEEECSCCCGGGEEECC-C-EEECCCTTCE
T ss_pred             eEEEeCCCCcccEEecCCc-EEEEEecCCC
Confidence            3599999999999997655 8999998764

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=91.90  E-value=0.077  Score=38.92  Aligned_cols=31  Identities=26%  Similarity=0.216  Sum_probs=25.2

Q ss_pred             CCCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           33 DPPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      ...++|+|+.+.|++ ..++.+.++||..+..
T Consensus       172 ~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          172 PLAACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             CCEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             CceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            445999999999999 5566789999987643

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=91.59  E-value=0.069  Score=41.55  Aligned_cols=30  Identities=27%  Similarity=0.324  Sum_probs=24.1

Q ss_pred             CCeEecCCCCCCeEeCCC----------------------------CCeEEeecCCcc
Q 044320           34 PPIIHWDIKATNTLLDSK----------------------------FTPKVFDFEISR   63 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~----------------------------~~~~l~dfg~~~   63 (176)
                      ..++|+|+.+.||+++.+                            +.+.++||..+.
T Consensus       249 ~v~~H~Dl~~gNiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lIDfEya~  306 (429)
T 1nw1_A          249 VTFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSAFNPADPRLVLIDFEYAS  306 (429)
T ss_dssp             EEEECSCCCGGGEEEEC------------------------------CCEECCCTTCE
T ss_pred             eEEEeCCCCCCeEEeeCCccccccccccccccccccccccccccCCCeEEEEecccCC
Confidence            459999999999999775                            678999997764

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=89.64  E-value=0.19  Score=38.53  Aligned_cols=30  Identities=37%  Similarity=0.337  Sum_probs=25.9

Q ss_pred             CCeEecCCCCCCeEeCCC----CCeEEeecCCcc
Q 044320           34 PPIIHWDIKATNTLLDSK----FTPKVFDFEISR   63 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~----~~~~l~dfg~~~   63 (176)
                      ..++|+|+.+.||+++.+    +.+.++||..+.
T Consensus       220 ~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          220 VVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             EEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             cEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence            459999999999999776    689999998764

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=89.31  E-value=0.38  Score=33.88  Aligned_cols=52  Identities=12%  Similarity=0.191  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHHHHHHHH-HHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320            8 SVSLAMRLHIALGLAEGIL-YLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~-~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      .++..+.++++.+++.-.. +++  .   -.|--++|+|++++.++.+++.-.|+...
T Consensus        81 ~~~~~eKlrll~nl~~L~~~~~~--~---r~tf~l~P~NL~f~~~~~p~i~hRGi~~~  133 (219)
T 4ano_A           81 KTTLLSRIRAAIHLVSKVKHHSA--R---RLIFIVCPENLMFNRALEPFFLHVGVKES  133 (219)
T ss_dssp             TSCHHHHHHHHHHHHHHHSSCCS--S---SEECCCCGGGEEECTTCCEEESCCEETTT
T ss_pred             hcCHHHHHHHHHHHHHHHHHhhh--C---ceeEEEeCceEEEeCCCcEEEEEcCCccc
Confidence            4678889999999887655 443  3   67889999999999999999998886543

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=89.20  E-value=0.2  Score=38.52  Aligned_cols=30  Identities=33%  Similarity=0.366  Sum_probs=24.7

Q ss_pred             CeEecCCCCCCeEe------CCCCCeEEeecCCccc
Q 044320           35 PIIHWDIKATNTLL------DSKFTPKVFDFEISRL   64 (176)
Q Consensus        35 ~~vH~dl~~~nil~------~~~~~~~l~dfg~~~~   64 (176)
                      +++|+|+.+.||++      ++...+.++||..+..
T Consensus       245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~  280 (401)
T 3g15_A          245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY  280 (401)
T ss_dssp             EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred             eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence            36799999999999      4457799999987753

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=87.18  E-value=0.65  Score=33.63  Aligned_cols=25  Identities=32%  Similarity=0.337  Sum_probs=20.7

Q ss_pred             CCCeEecCCCCCCeEeCCCCCeEEee
Q 044320           33 DPPIIHWDIKATNTLLDSKFTPKVFD   58 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~~~~~l~d   58 (176)
                      .+.++|+|+.+.|++++.++. .+.|
T Consensus       187 ~p~LvHGDlw~gNvl~~~~g~-~~iD  211 (288)
T 3f7w_A          187 PPARIHGDLWNGNVLWQDDGA-VVID  211 (288)
T ss_dssp             CCEEECSCCSGGGEEEETTEE-EECS
T ss_pred             CCeeeecCCCCCcEEEcCCCe-EEEe
Confidence            567999999999999998874 4555

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=86.23  E-value=0.29  Score=36.39  Aligned_cols=27  Identities=19%  Similarity=0.154  Sum_probs=23.5

Q ss_pred             CCCeEecCCCCCCeEeCCCCCeEEeecC
Q 044320           33 DPPIIHWDIKATNTLLDSKFTPKVFDFE   60 (176)
Q Consensus        33 ~~~~vH~dl~~~nil~~~~~~~~l~dfg   60 (176)
                      .+.++|+|+.+.|++++.++ +.++|+.
T Consensus       206 ~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          206 KPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             CCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             CceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence            56699999999999998887 8888974

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=84.67  E-value=0.48  Score=36.86  Aligned_cols=29  Identities=24%  Similarity=0.378  Sum_probs=25.3

Q ss_pred             CCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           34 PPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      ..++|+|+.+.|++ +.++.+.++||..+.
T Consensus       262 ~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~  290 (424)
T 3mes_A          262 LVFAHNDLQENNLL-QTQNNIRMIDYEYSA  290 (424)
T ss_dssp             EEEECSCCCGGGEE-ECSSCEEECCCTTCE
T ss_pred             ceEECCCCCcccee-cCCCcEEEEecccCC
Confidence            35899999999999 777889999998774

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=82.95  E-value=0.73  Score=32.36  Aligned_cols=52  Identities=10%  Similarity=0.024  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      +.++.++.++++.+++....++++     -.|--++|.|++++.++.+++.-.|+..
T Consensus        76 k~~~~~eKlr~l~ni~~l~~~~~~-----r~tf~L~P~NL~f~~~~~p~i~~RGik~  127 (215)
T 4ann_A           76 KSFTKNEKLRYLLNIKNLEEVNRT-----RYTFVLAPDELFFTRDGLPIAKTRGLQN  127 (215)
T ss_dssp             GGSCHHHHHHHHHHGGGGGGGGGS-----SEECCCSGGGEEECTTSCEEESCCEETT
T ss_pred             HhcCHHHHHHHHHHHHHHHHHhcC-----ceEEEEecceEEEcCCCCEEEEEccCcc
Confidence            457888999999999887755443     5678899999999999999999877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	176
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-20
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-16
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-16
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	7e-16
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	6e-15
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-14
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-14
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-14
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	4e-14
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	4e-14
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	5e-14
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	6e-14
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	6e-14
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	7e-14
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-13
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	2e-13
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-13
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-13
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	7e-13
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	7e-13
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-12
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-12
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	4e-12
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	4e-12
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	6e-12
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	7e-12
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-11
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-11
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-10
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-10
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	3e-10
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-10
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	5e-10
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-09
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	2e-09
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-08
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-08
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	3e-08
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-08
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	6e-08
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-07
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	3e-07
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	4e-07
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	9e-07
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-06
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-06
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	1e-06
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	2e-06
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-06
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	6e-06
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	8e-06
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	8e-06
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	8e-06
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-05
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-05
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	5e-05
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	8e-05
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-04
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	0.002
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	0.002

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (205), Expect = 2e-20
 Identities = 32/184 (17%), Positives = 60/184 (32%), Gaps = 40/184 (21%)

Query: 4   RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
                  +   + IA   A+G+ YLH      IIH D+K+ N  L    T K+ DF ++ 
Sbjct: 96  IIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLAT 152

Query: 64  LAPVPNINGVVGHVSI--------VVKGTHTQQLTEKSDIYGLGIACLYM---------- 105
           +    + +     +S         V++       + +SD+Y  GI    +          
Sbjct: 153 VKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNI 212

Query: 106 -------------------GLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENISS 146
                                      K    L  +  + +   RP   ++   +E ++ 
Sbjct: 213 NNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLAR 272

Query: 147 MLPE 150
            LP+
Sbjct: 273 SLPK 276

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.0 bits (178), Expect = 2e-16
 Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 33/174 (18%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           ++S     +S A +L IA  +A G+ YL    +   +H D+   N L+      K+ DF 
Sbjct: 129 VSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFG 185

Query: 61  ISRLAPVPNINGVVGHVSIVVKGT-----HTQQLTEKSDIYGLGIACLYMGLYSF----- 110
           +SR     +     G+ +I ++          + T +SD++  G+    +  Y       
Sbjct: 186 LSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG 245

Query: 111 --------------------EYLKRFMSLALKYCEDETKARPSMLEVARQLENI 144
                                      +L           RPS   + R L+ +
Sbjct: 246 MAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRM 299

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (176), Expect = 2e-16
 Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 28/171 (16%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           + SR R  +     L  +L + E + YL        +H D+ A N L+      KV DF 
Sbjct: 92  LRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFG 148

Query: 61  ISRLAPVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYM---GLYSFE------ 111
           +++ A      G +       +    ++ + KSD++  GI    +   G   +       
Sbjct: 149 LTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD 208

Query: 112 ----------------YLKRFMSLALKYCEDETKARPSMLEVARQLENISS 146
                                  +       +   RPS L++  QLE+I +
Sbjct: 209 VVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT 259

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.9 bits (173), Expect = 7e-16
 Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 32/181 (17%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           R+ VS  + L++A  ++  + YL        IH D+ A N L+      KV DF +SRL 
Sbjct: 109 RQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLM 165

Query: 66  PVPNIN---GVVGHVSIVV-KGTHTQQLTEKSDIYGLGIACLYM---------------- 105
                    G    +     +     + + KSD++  G+    +                
Sbjct: 166 TGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV 225

Query: 106 ---------GLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENISSMLPESDTIPT 156
                            ++   L     +     RPS  E+ +  E +      SD +  
Sbjct: 226 YELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEK 285

Query: 157 E 157
           E
Sbjct: 286 E 286

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (167), Expect = 6e-15
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 38/169 (22%)

Query: 10  SLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN 69
           ++   + +  G+A G+ YL    D   +H D+ A N L++S    KV DF +SR     +
Sbjct: 126 TVIQLVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLE-DD 181

Query: 70  INGVVGHVSIVVKGTH---------TQQLTEKSDIYGLGIACLYMGLY------------ 108
            +      ++  K             ++ T  SD++  GI    +  Y            
Sbjct: 182 TSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQD 241

Query: 109 -------------SFEYLKRFMSLALKYCEDETKARPSMLEVARQLENI 144
                          +       L L   + +   RP   ++   L+ +
Sbjct: 242 VINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKM 290

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (165), Expect = 1e-14
 Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
              +   +   +++ + +G+ YL  +    I+H D+K +N L++S+   K+ DF +S   
Sbjct: 98  AGRIPEQILGKVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQL 155

Query: 66  PVPNINGVVGHVS-IVVKGTHTQQLTEKSDIYGLGIACLYM 105
                N  VG  S +  +       + +SDI+ +G++ + M
Sbjct: 156 IDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEM 196

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 2e-14
 Identities = 26/180 (14%), Positives = 57/180 (31%), Gaps = 40/180 (22%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           R  + ++    +   ++ G+ YL    +   +H D+ A N LL ++   K+ DF +S+  
Sbjct: 103 REEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKAL 159

Query: 66  PVPNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACLYM---GLYSF--- 110
              +            K           + ++ + +SD++  G+        G   +   
Sbjct: 160 GADDSY---YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM 216

Query: 111 -------------------EYLKRFMSLALKYCEDETKARPSMLEVARQLENISSMLPES 151
                              E      +L       + + RP  L V +++      L   
Sbjct: 217 KGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASK 276

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 2e-14
 Identities = 35/192 (18%), Positives = 63/192 (32%), Gaps = 43/192 (22%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           +     + + L   + +A  +A G+ Y+        +H D++A N L+      KV DF 
Sbjct: 102 LKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFG 158

Query: 61  ISRLAPVPNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACLYM------ 105
           ++RL                 K              + T KSD++  GI    +      
Sbjct: 159 LARLIEDNEY-----TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRV 213

Query: 106 ---GLYSFEYLKR----------------FMSLALKYCEDETKARPSMLEVARQLENISS 146
              G+ + E L +                   L  +    E + RP+   +   LE+  +
Sbjct: 214 PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT 273

Query: 147 MLPESDTIPTES 158
              E    P E+
Sbjct: 274 S-TEPQYQPGEN 284

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 4e-14
 Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 43/184 (23%)

Query: 10  SLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN 69
           S+   + +  G+A G+ YL    +   +H D+ A N L++S    KV DF +SR+     
Sbjct: 108 SVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLE--- 161

Query: 70  INGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACLYM--------------- 105
            +    + +   K             ++ T  SD++  GI    +               
Sbjct: 162 DDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE 221

Query: 106 ----------GLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENISSMLPESDTIP 155
                          +       L ++  + E   RP   ++   L+    ++   D++ 
Sbjct: 222 VMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILD---KLIRAPDSLK 278

Query: 156 TESD 159
           T +D
Sbjct: 279 TLAD 282

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (161), Expect = 4e-14
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 4   RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
              R ++ +    +     + + YLH   D  IIH D+KA N L       K+ DF +S 
Sbjct: 102 ELERPLTESQIQVVCKQTLDALNYLH---DNKIIHRDLKAGNILFTLDGDIKLADFGVSA 158

Query: 64  L--APVPNINGVVGHV------SIVVKGTHTQQLTEKSDIYGLGIACLYM 105
                +   +  +G         ++ + +  +    K+D++ LGI  + M
Sbjct: 159 KNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEM 208

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (160), Expect = 5e-14
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 4/146 (2%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEISRL 64
            + + + +       + +G+ +LH    PPIIH D+K  N  +     + K+ D  ++ L
Sbjct: 106 FKVMKIKVLRSWCRQILKGLQFLH-TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL 164

Query: 65  APVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYM--GLYSFEYLKRFMSLALK 122
                   V+G    +    + ++  E  D+Y  G+  L M    Y +   +    +  +
Sbjct: 165 KRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRR 224

Query: 123 YCEDETKARPSMLEVARQLENISSML 148
                  A    + +    E I   +
Sbjct: 225 VTSGVKPASFDKVAIPEVKEIIEGCI 250

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 6e-14
 Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 32/173 (18%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           + +     +++   L +A  +AEG+ ++    +   IH D++A N L+    + K+ DF 
Sbjct: 98  LKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFG 154

Query: 61  ISRLAP---VPNINGVVGHVSIVVKGTH-TQQLTEKSDIYGLGIACLYM---GLYSFE-- 111
           ++RL          G    +             T KSD++  GI    +   G   +   
Sbjct: 155 LARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM 214

Query: 112 --------------------YLKRFMSLALKYCEDETKARPSMLEVARQLENI 144
                                 +    L     ++  + RP+   +   LE+ 
Sbjct: 215 TNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 6e-14
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 63/205 (30%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEA-----DPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           R +V++   + +AL  A G+ +LH E       P I H D+K+ N L+    T  + D  
Sbjct: 94  RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG 153

Query: 61  ISRLAPVPN------INGVVGHVSIVV-------KGTHTQQLTEKSDIYGLGIACLYM-- 105
           ++              N  VG    +              +  +++DIY +G+    +  
Sbjct: 154 LAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR 213

Query: 106 -------------------------------------------GLYSFEYLKRFMSLALK 122
                                                         S E L+    +  +
Sbjct: 214 RCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRE 273

Query: 123 YCEDETKARPSMLEVARQLENISSM 147
                  AR + L + + L  +S  
Sbjct: 274 CWYANGAARLTALRIKKTLSQLSQQ 298

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 7e-14
 Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 35/197 (17%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           + +    ++S    LH A  +A G+ YL        IH D+ A N L+   +  K+ DF 
Sbjct: 116 IANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFG 172

Query: 61  ISRLAP--VPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYM---------GLYS 109
           +SR     V    G +    + ++  +    T  SD++  G+    +         G+  
Sbjct: 173 LSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC 232

Query: 110 FEYLKR----------------FMSLALKYCEDETKARPSMLEVARQLENI-----SSML 148
            E  ++                   L  +   ++   RPS  ++   L  +     + + 
Sbjct: 233 AELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKTYVN 292

Query: 149 PESDTIPTESDISASGE 165
                  T + I  S E
Sbjct: 293 TTLYEKFTYAGIDCSAE 309

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 39/187 (20%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
             + ++   +   L +A+G   +   A    +H D+ A N +LD KFT KV DF ++R  
Sbjct: 124 THNPTVKDLIGFGLQVAKG---MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 180

Query: 66  PVPNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACLYM---------GL 107
                + V  H     K            TQ+ T KSD++  G+    +          +
Sbjct: 181 YDKEFDSV--HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV 238

Query: 108 YSFEYLKR----------------FMSLALKYCEDETKARPSMLEVARQLENISSMLPES 151
            +F+                       + LK    + + RPS  E+  ++  I S     
Sbjct: 239 NTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 298

Query: 152 DTIPTES 158
             +   +
Sbjct: 299 HYVHVNA 305

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 33/172 (19%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
              +S    +  A  +A G+ YL        IH D+ A N L+      K+ DF ++R  
Sbjct: 129 EEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDI 185

Query: 66  PVPNINGVVGHVSIVVK-----GTHTQQLTEKSDIYGLGIACLYM---GLYSFE------ 111
              +      +  + VK         +  T +SD++  G+    +   G   +       
Sbjct: 186 HHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE 245

Query: 112 ----------------YLKRFMSLALKYCEDETKARPSMLEVARQLENISSM 147
                                  +           RP+  ++   L+ I ++
Sbjct: 246 LFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVAL 297

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.2 bits (156), Expect = 2e-13
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR-L 64
           ++ +       +  G  +G+ YLH      +IH D+KA N LL      K+ DF  +  +
Sbjct: 109 KKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIM 165

Query: 65  APVPNINGVVGHVSI-VVKGTHTQQLTEKSDIYGLGIACLYM 105
           AP  +  G    ++  V+      Q   K D++ LGI C+ +
Sbjct: 166 APANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 207

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (153), Expect = 5e-13
 Identities = 38/151 (25%), Positives = 55/151 (36%), Gaps = 15/151 (9%)

Query: 4   RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
           +                LA  + Y H      +IH DIK  N LL S    K+ DF  S 
Sbjct: 98  QKLSKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 154

Query: 64  LAPVPNINGVVGHVSI----VVKGTHTQQLTEKSDIYGLGIACLYM--GLYSFEYLKRFM 117
            AP      + G +      +++G   +   EK D++ LG+ C     G   FE    + 
Sbjct: 155 HAPSSRRTTLCGTLDYLPPEMIEG---RMHDEKVDLWSLGVLCYEFLVGKPPFEA-NTYQ 210

Query: 118 SLALKYCEDETKARPSMLEVARQLENISSML 148
               +    E      + E AR L  IS +L
Sbjct: 211 ETYKRISRVEFTFPDFVTEGARDL--ISRLL 239

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 7e-13
 Identities = 25/178 (14%), Positives = 60/178 (33%), Gaps = 41/178 (23%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
                + ++     L+  + +A+G+ YL    D  ++H D+ A N L+ +    K+ DF 
Sbjct: 100 YVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFG 156

Query: 61  ISRLAPVPNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACLYM---GLY 108
           +++L           + +   K             +  T +SD++  G+    +   G  
Sbjct: 157 LAKLLGAEEKE----YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSK 212

Query: 109 SFEYL----------------------KRFMSLALKYCEDETKARPSMLEVARQLENI 144
            ++ +                           + +K    +  +RP   E+  +   +
Sbjct: 213 PYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 270

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 7e-13
 Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 40/173 (23%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
            R V     + +   ++ G+ YL    +   +H D+ A N LL ++   K+ DF +S+  
Sbjct: 101 NRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKAL 157

Query: 66  PVPNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGI---ACLYMGLYSFE-- 111
                           K           +  + + KSD++  G+        G   +   
Sbjct: 158 RADENY---YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM 214

Query: 112 --------------------YLKRFMSLALKYCEDETKARPSMLEVARQLENI 144
                                 +    L       + + RP    V  +L N 
Sbjct: 215 KGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 267

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 1e-12
 Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 42/175 (24%)

Query: 4   RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
             + S+ LA  +  A  L+  + YL        +H DI A N L+ S    K+ DF +SR
Sbjct: 100 VRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSR 156

Query: 64  LAPVPNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACLYM--------- 105
                 +     + +   K           + ++ T  SD++  G+    +         
Sbjct: 157 Y-----MEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ 211

Query: 106 GLYSFEYLKR----------------FMSLALKYCEDETKARPSMLEVARQLENI 144
           G+ + + + R                  SL  K    +   RP   E+  QL  I
Sbjct: 212 GVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 266

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLH--TEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           ++ R+ +     L +   L   +   H  ++    ++H D+K  N  LD K   K+ DF 
Sbjct: 100 TKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 159

Query: 61  ISRLAPVPNINGVVGHVSIVVKG---THTQQLTEKSDIYGLGIACLYM 105
           ++R+             +         +     EKSDI+ LG     +
Sbjct: 160 LARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYEL 207

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 4e-12
 Identities = 28/170 (16%), Positives = 54/170 (31%), Gaps = 42/170 (24%)

Query: 10  SLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN 69
           +    L + L + EG   +    +  +IH D+ A N L+      KV DF ++R      
Sbjct: 99  AAETLLGMCLDVCEG---MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ 155

Query: 70  INGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACLYM---------GLYSFE 111
                   S   K              + + KSD++  G+    +            + E
Sbjct: 156 Y-----TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE 210

Query: 112 YLKR----------------FMSLALKYCEDETKARPSMLEVARQLENIS 145
            ++                    +     ++  + RP+   + RQL  I+
Sbjct: 211 VVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIA 260

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 4e-12
 Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 42/173 (24%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           R        L +   + E + YL        +H D+ A N L++ +   KV DF +SR  
Sbjct: 94  RHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYV 150

Query: 66  PVPNINGVVGHVSIVVKGT---------HTQQLTEKSDIYGLGIACLYM---GLYSFEYL 113
                       S+  K              + + KSDI+  G+    +   G   +E  
Sbjct: 151 LDDEY-----TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF 205

Query: 114 ----------------------KRFMSLALKYCEDETKARPSMLEVARQLENI 144
                                 ++  ++      ++   RP+   +   + ++
Sbjct: 206 TNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDV 258

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 6e-12
 Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 34/170 (20%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
             ++ L   L  +  +A+G+ +L        IH D+ A N LL      K+ DF ++R  
Sbjct: 139 ELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDI 195

Query: 66  PVPNINGVVGHVSIVV-----KGTHTQQLTEKSDIYGLGIACLYM--------------- 105
              +   V G+  + V     +       T +SD++  GI    +               
Sbjct: 196 KNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDS 255

Query: 106 -----------GLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLENI 144
                       L           +     + +   RP+  ++ + +E  
Sbjct: 256 KFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ 305

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 7e-12
 Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 34/168 (20%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
              ++    L  A  +A+G+ +L        +H D+ A N L+      K+ DF ++R  
Sbjct: 158 LNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDI 214

Query: 66  PVPNINGVVGHVSIVVKGT-----HTQQLTEKSDIYGLGIACLYM--------------- 105
              +   V G+  + VK            T KSD++  GI    +               
Sbjct: 215 MSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDA 274

Query: 106 -----------GLYSFEYLKRFMSLALKYCEDETKARPSMLEVARQLE 142
                          F   +    +       +++ RPS   +   L 
Sbjct: 275 NFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG 322

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 28/173 (16%), Positives = 54/173 (31%), Gaps = 34/173 (19%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEIS 62
             ++  ++L   +  +  +A+G+ +L +      IH D+ A N LL  K   K+ DF ++
Sbjct: 125 DLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLA 181

Query: 63  RLAPVPNINGVVGHVS-----IVVKGTHTQQLTEKSDIYGLGIACLYMGLYSF------- 110
           R           G        +  +    +  T +SD++  G+    +            
Sbjct: 182 RDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 241

Query: 111 -------------------EYLKRFMSLALKYCEDETKARPSMLEVARQLENI 144
                                        L     E   RP+  E+   L N+
Sbjct: 242 IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 294

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (140), Expect = 2e-11
 Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 23/157 (14%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
              +           L  G++YLH      I H DIK  N LLD +   K+ DF ++ + 
Sbjct: 97  DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 153

Query: 66  PVPNINGVVGHVSIVVKGT----------HTQQLTEKSDIYGLGIACLYM--GLYSFEYL 113
              N   ++      + GT            +   E  D++  GI    M  G   ++  
Sbjct: 154 RYNNRERLLNK----MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP 209

Query: 114 KRFMSLALKYCEDETKARP--SMLEVARQLENISSML 148
                    + E +T   P   +      L  +  +L
Sbjct: 210 SDSCQEYSDWKEKKTYLNPWKKIDSAPLAL--LHKIL 244

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 2e-10
 Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 41/174 (23%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           +    L      A+ +AEG+ YL        IH D+ A N LL ++   K+ DF + R  
Sbjct: 105 QGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRAL 161

Query: 66  PVPNINGVVGHVSIVVKGTH---------TQQLTEKSDIYGLGIACLYM---GLYSFEYL 113
           P  + + V+       K            T+  +  SD +  G+    M   G   +  L
Sbjct: 162 PQNDDHYVMQE---HRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL 218

Query: 114 -----------------------KRFMSLALKYCEDETKARPSMLEVARQLENI 144
                                  +   ++ ++    + + RP+ + +   L   
Sbjct: 219 NGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 272

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 55.5 bits (133), Expect = 2e-10
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 14/154 (9%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR-L 64
           + ++S      I   L E I  LH      I+H D+K  N LLD     K+ DF  S  L
Sbjct: 104 KVTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL 160

Query: 65  APVPNINGVVGHVSIVV-------KGTHTQQLTEKSDIYGLGIACLYM--GLYSFEYLKR 115
            P   +  V G  S +           +     ++ D++  G+    +  G   F + K+
Sbjct: 161 DPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ 220

Query: 116 FMSLALKYCEDETKARPSMLEVARQLEN-ISSML 148
            + L +    +     P   + +  +++ +S  L
Sbjct: 221 MLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFL 254

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 3e-10
 Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 11/161 (6%)

Query: 16  HIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVG 75
                 AE +  L       IIH D+K  N LL+     ++ DF  +++    +      
Sbjct: 109 CTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARAN 168

Query: 76  HVSIVVKGT-----HTQQLTEKSDIYGLGIACLYM--GLYSFEYLKRFMSLALKYCEDET 128
                 +         +   + SD++ LG     +  GL  F        +  K  + E 
Sbjct: 169 SFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE-YLIFQKIIKLEY 227

Query: 129 KARPSMLEVARQLENISSML-PESDTIPTESDISASGEILE 168
                    AR L  +  +L  ++       ++   G +  
Sbjct: 228 DFPEKFFPKARDL--VEKLLVLDATKRLGCEEMEGYGPLKA 266

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.5 bits (133), Expect = 3e-10
 Identities = 32/135 (23%), Positives = 46/135 (34%), Gaps = 5/135 (3%)

Query: 16  HIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVG 75
                 AE  L L       II+ D+K  N LLD     K+ DF  ++  P         
Sbjct: 105 VAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGT 164

Query: 76  HVSIVVKGTHTQQLTEKSDIYGLGIACLYM--GLYSFEYLKRFMSLALKYCEDETKARPS 133
              I  +   T+   +  D +  GI    M  G   F Y    M    K    E +  P 
Sbjct: 165 PDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPF-YDSNTMKTYEKILNAELRFPPF 223

Query: 134 MLEVARQLENISSML 148
             E  + L  +S ++
Sbjct: 224 FNEDVKDL--LSRLI 236

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 5e-10
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 5   FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRL 64
               +       +     + + +LH+     +IH DIK+ N LL    + K+ DF     
Sbjct: 109 TETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQ 165

Query: 65  APVPN--INGVVGHVS-IVVKGTHTQQLTEKSDIYGLGIACLYM 105
                   + +VG    +  +    +    K DI+ LGI  + M
Sbjct: 166 ITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEM 209

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 11/143 (7%)

Query: 12  AMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN 71
           A     A  +  G+ ++H   +  +++ D+K  N LLD     ++ D  ++        +
Sbjct: 107 ADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH 163

Query: 72  GVVGHVSIVVKG--THTQQLTEKSDIYGLGIACLYM--GLYSF--EYLKRFMSLALKYCE 125
             VG    +              +D + LG     +  G   F     K    +      
Sbjct: 164 ASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT 223

Query: 126 DETKARPSMLEVARQLENISSML 148
              +   S     R L  +  +L
Sbjct: 224 MAVELPDSFSPELRSL--LEGLL 244

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 9/109 (8%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           +       V       +   L  G+ +LH+     ++H D+K  N L+ S    K+ DF 
Sbjct: 105 LDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFG 161

Query: 61  ISRLAPVPNIN----GVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYM 105
           ++R+             + + +  V            D++ +G     M
Sbjct: 162 LARIYSFQMALTSVVVTLWYRAPEV--LLQSSYATPVDLWSVGCIFAEM 208

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 33/165 (20%)

Query: 10  SLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN 69
           SL+  + +A  +A+G+ YL+       +H D+ A N ++   FT K+ DF ++R     +
Sbjct: 131 SLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETD 187

Query: 70  INGVVGHVSIVVKGT-----HTQQLTEKSDIYGLGIACLYM---GLYSFEYL-------- 113
                G   + V+            T  SD++  G+    +       ++ L        
Sbjct: 188 YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRF 247

Query: 114 --------------KRFMSLALKYCEDETKARPSMLEVARQLENI 144
                              L     +   K RPS LE+   ++  
Sbjct: 248 VMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEE 292

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 20/107 (18%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
            + +S     +    +  G+ Y+H      ++H D+K +N LL++    K+ DF ++R+A
Sbjct: 103 TQHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 159

Query: 66  PVPNINGVVGHVSIVVKG-------THTQQLTEKSDIYGLGIACLYM 105
              + +       +  +         +++  T+  DI+ +G     M
Sbjct: 160 DPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEM 206

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 16  HIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-----I 70
                 AE +  L       +++ DIK  N +LD     K+ DF + +            
Sbjct: 106 RARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTF 165

Query: 71  NGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYM 105
            G   +++  V            D +GLG+    M
Sbjct: 166 CGTPEYLAPEV--LEDNDYGRAVDWWGLGVVMYEM 198

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 5e-08
 Identities = 14/104 (13%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTP--KVFDFEISR 63
              ++    +     + E + +LH      I H+DI+  N +  ++ +   K+ +F  +R
Sbjct: 96  AFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQAR 152

Query: 64  LAPVPNINGVVGHVS--IVVKGTHTQQLTEKSDIYGLGIACLYM 105
                +   ++         +      ++  +D++ LG     +
Sbjct: 153 QLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVL 196

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 48.9 bits (116), Expect = 6e-08
 Identities = 18/107 (16%), Positives = 45/107 (42%), Gaps = 13/107 (12%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTP--KVFDFEISR 63
              +S    +     + +G+ ++H   +   +H D+K  N +  +K +   K+ DF ++ 
Sbjct: 118 HNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTA 174

Query: 64  -LAPVPNINGVVGHVSI----VVKGTHTQQLTEKSDIYGLGIACLYM 105
            L P  ++    G        V +G   + +   +D++ +G+    +
Sbjct: 175 HLDPKQSVKVTTGTAEFAAPEVAEG---KPVGYYTDMWSVGVLSYIL 218

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 4   RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
                +         L L  GI Y H   D  ++H D+K  N L++ +   K+ DF ++R
Sbjct: 92  VCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLAR 148

Query: 64  L--APVPNINGVVGHVSIVVKG--THTQQLTEKSDIYGLGIACLYM 105
               PV      +  +          +++ +   DI+ +G     M
Sbjct: 149 AFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEM 194

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 3e-07
 Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 7/107 (6%)

Query: 3   SRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEI 61
           SR ++++ +         L   + Y+H      I H DIK  N LLD      K+ DF  
Sbjct: 113 SRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGS 169

Query: 62  SRLAPVPNINGVVGHVSIVVKGT---HTQQLTEKSDIYGLGIACLYM 105
           ++       N                     T   D++  G     +
Sbjct: 170 AKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAEL 216

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
               S       A  +     YLH      +I+ D+K  N L+D +   +V DF  ++  
Sbjct: 135 IGRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK-R 190

Query: 66  PVPNINGVVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYM 105
                  + G    +      ++   +  D + LG+    M
Sbjct: 191 VKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEM 231

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 9e-07
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 18/111 (16%)

Query: 4   RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
           +      L+     A  +  G+ +LH      I++ D+K  N LLD     K+ DF + +
Sbjct: 95  QSCHKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCK 151

Query: 64  LAPVPNINGVVGHVSIVVKGTH---------TQQLTEKSDIYGLGIACLYM 105
              + +        +    GT           Q+     D +  G+    M
Sbjct: 152 ENMLGD------AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEM 196

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 18/117 (15%)

Query: 4   RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTP-----KVFD 58
              R  S+      A  +   +  +H   +  +++ DIK  N L+    +       V D
Sbjct: 93  LCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVD 149

Query: 59  FEISRLAPVPNINGVV-GHVSIVVKGT---------HTQQLTEKSDIYGLGIACLYM 105
           F + +    P     +       + GT           ++ + + D+  LG   +Y 
Sbjct: 150 FGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYF 206

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 12/100 (12%)

Query: 16  HIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVG 75
            I   +   +  L+      I+H D+KA N L+      K+ DF ++R   +   +    
Sbjct: 118 EIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNR 177

Query: 76  HVSIVVKGT----------HTQQLTEKSDIYGLGIACLYM 105
           + + V   T            +      D++G G     M
Sbjct: 178 YTNRV--VTLWYRPPELLLGERDYGPPIDLWGAGCIMAEM 215

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 13  MRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVP---- 68
               +   L + +  L       ++H D+K  N L++     K+ +F ++R   +P    
Sbjct: 99  DPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY 158

Query: 69  NINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYM 105
           +   V             +  +   D++  G     +
Sbjct: 159 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAEL 195

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 16  HIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA------PVPN 69
            + + + E +L L       II+ DIK  N LLDS     + DF +S+           +
Sbjct: 130 EVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYD 189

Query: 70  INGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYM 105
             G + +++  +         +  D + LG+    +
Sbjct: 190 FCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYEL 225

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           M +     + L +       L +G+ + H      ++H D+K  N L++++   K+ DF 
Sbjct: 91  MDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFG 147

Query: 61  ISRLAPVPN--INGVVGHVSIVV--KGTHTQQLTEKSDIYGLGIACLYM 105
           ++R   VP       V  +           +  +   DI+ LG     M
Sbjct: 148 LARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEM 196

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 6e-06
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 14/113 (12%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTP---KVF 57
           +  R  ++ +      I   + E I YLH      I H D+K  N L  SK      K+ 
Sbjct: 100 IQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLT 156

Query: 58  DFEISRLAPVPNINGVVGHVSI-----VVKGTHTQQLTEKSDIYGLGIACLYM 105
           DF  ++     N      +        V+     ++  +  D++ LG+    +
Sbjct: 157 DFGFAKETTSHNSLTTPCYTPYYVAPEVLGP---EKYDKSCDMWSLGVIMYIL 206

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.5 bits (99), Expect = 8e-06
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 16/118 (13%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK---FTPKVF 57
           + +   R  SL   L +A  +   I Y+H       IH D+K  N L+          + 
Sbjct: 92  LFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYII 148

Query: 58  DFEISRLAPVPNINGVV-GHVSIVVKGT---------HTQQLTEKSDIYGLGIACLYM 105
           DF +++       +  +    +  + GT            + + + D+  LG   +Y 
Sbjct: 149 DFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYF 206

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.7 bits (100), Expect = 8e-06
 Identities = 14/102 (13%), Positives = 33/102 (32%), Gaps = 2/102 (1%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
           +   +      +   + + + YLH                  LD      + DF +S++ 
Sbjct: 101 KGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKME 160

Query: 66  -PVPNINGVVGHVSIVVKGTHTQQ-LTEKSDIYGLGIACLYM 105
            P   ++   G    V      Q+  ++  D + +G+    +
Sbjct: 161 DPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYIL 202

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 8e-06
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD-SKFTPKVFDFEISRL 64
           R ++   +       + E + + H   +  ++H DIK  N L+D ++   K+ DF    L
Sbjct: 104 RGALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGAL 160

Query: 65  APVPNINGVVGHVSIVVKG--THTQQLTEKSDIYGLGIACLYM 105
                     G           + +     + ++ LGI    M
Sbjct: 161 LKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDM 203

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLA 65
              ++ +      L   +G+ YLH      I+H D+K  N LLD     K+ DF +++  
Sbjct: 94  SLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSF 150

Query: 66  PVPNINGVVGHVSIVVKG----THTQQLTEKSDIYGLGIACLYM 105
             PN       V+   +        +      D++ +G     +
Sbjct: 151 GSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAEL 194

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 4   RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTP--KVFDFEI 61
                +S A  ++      EG+ ++H   +  I+H DIK  N + ++K     K+ DF +
Sbjct: 119 AEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGL 175

Query: 62  SRLA----PVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYM 105
           +        V          +  +     + +   +D++ +G+    +
Sbjct: 176 ATKLNPDEIVKVTTATAEFAAPEIV--DREPVGFYTDMWAIGVLGYVL 221

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 15/111 (13%)

Query: 4   RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
                ++    + +     + + + H      IIH D+K  N ++ +    KV DF I+R
Sbjct: 103 HTEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIAR 159

Query: 64  LAPVPNINGVVGHVSIVVKGTH---------TQQLTEKSDIYGLGIACLYM 105
                  +      +  V GT             +  +SD+Y LG     +
Sbjct: 160 AIADSGNSV---TQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEV 207

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.0 bits (90), Expect = 8e-05
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 1   MTSRFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFE 60
           + ++    V +     +   + E +   +      I+H D+   N L+  +    + DF 
Sbjct: 92  IDAKELYRVRVENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS-EEGIWIIDFP 147

Query: 61  ISRLAPVPN 69
            S       
Sbjct: 148 QSVEVGEEG 156

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 4   RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISR 63
             +  +      ++   +  GI +LH      IIH D+K +N ++ S  T K+ DF ++R
Sbjct: 111 VIQMELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 167

Query: 64  LAPVPNI-NGVVGHVSIVV-KGTHTQQLTEKSDIYGLGIACLYM 105
            A    +    V        +        E  DI+ +G     M
Sbjct: 168 TAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 211

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 8/106 (7%)

Query: 6   RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTP------KVFDF 59
            R + L     I+  L  G+ Y+H      IIH DIK  N L++   +P      K+ D 
Sbjct: 119 HRGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDSPENLIQIKIADL 176

Query: 60  EISRLAPVPNINGVVGHVSIVVKGTHTQQLTEKSDIYGLGIACLYM 105
             +        N +        +          +DI+        +
Sbjct: 177 GNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFEL 222

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 4   RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF-TPKVFDFEIS 62
           +  ++++          + + + Y H      I+H D+K  N ++D +    ++ D+ ++
Sbjct: 121 QLYQTLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLA 177

Query: 63  R-LAPVPNINGVVG--HVSIVVKGTHTQQLTEKSDIYGLGIACLYM 105
               P    N  V   +          Q      D++ LG     M
Sbjct: 178 EFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASM 223

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.98
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.98
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.98
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.97
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.97
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.97
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.97
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.97
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.97
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.97
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.97
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.97
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.97
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.97
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.97
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.97
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.97
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.97
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.97
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.97
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.97
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.97
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.97
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.97
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.97
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.97
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.97
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.97
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.97
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.96
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.96
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.96
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.96
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.96
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.96
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.96
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.96
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.96
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.96
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.96
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.96
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.96
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.96
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.96
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.96
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.96
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.95
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.95
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.95
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.94
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.94
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.93
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.5
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	94.34
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	94.12
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	93.82
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	93.22
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	90.89
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	84.72

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=217.64  Aligned_cols=142  Identities=23%  Similarity=0.364  Sum_probs=117.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~   80 (176)
                      .+..+++.+++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++......    .....|+..|.
T Consensus        97 ~~~~~~~~~~~~i~~qi~~gl~yLH~~~---ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~  173 (276)
T d1uwha_          97 IETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWM  173 (276)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGC
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHhcCC---EeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccC
Confidence            4567999999999999999999999999   9999999999999999999999999997654322    12334555565


Q ss_pred             ecCCC----CCCCCcccchhhHhHHHHHHhccChHHH-----------------------------HHHHHHHHhhcccC
Q 044320           81 VKGTH----TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------------KRFMSLALKYCEDE  127 (176)
Q Consensus        81 ~~~~~----~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------------~~l~~l~~~~~~~~  127 (176)
                      +|+..    ...++.++|||||||++|||.++..||.                             +.+.+++.+||..+
T Consensus       174 APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~d  253 (276)
T d1uwha_         174 APEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKK  253 (276)
T ss_dssp             CHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSS
T ss_pred             CHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhccccchHHHHHHHHHHcCCC
Confidence            55543    3458899999999999999998887763                             24889999999999


Q ss_pred             CCCCCCHHHHHHHHHhhhhcCC
Q 044320          128 TKARPSMLEVARQLENISSMLP  149 (176)
Q Consensus       128 p~~Rp~~~~i~~~l~~~~~~~~  149 (176)
                      |.+|||+.++++.|+.+...+|
T Consensus       254 p~~RPt~~~il~~Le~l~~~~P  275 (276)
T d1uwha_         254 RDERPLFPQILASIELLARSLP  275 (276)
T ss_dssp             GGGSCCHHHHHHHHHHHHHTCC
T ss_pred             HhHCcCHHHHHHHHHHHHHcCC
Confidence            9999999999999999887655

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.9e-34  Score=213.02  Aligned_cols=139  Identities=21%  Similarity=0.306  Sum_probs=108.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-------Cccccc
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-------GVVGHV   77 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-------~~~~~~   77 (176)
                      ....+++.+++.++.|++.||+|||+++   ++||||||+|||++.++.+||+|||+++........       ...+..
T Consensus       121 ~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~  197 (299)
T d1jpaa_         121 NDGQFTVIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPI  197 (299)
T ss_dssp             TTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC-----------------------CG
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHhhCC---CccCccccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCc
Confidence            4557999999999999999999999999   999999999999999999999999999865432211       112333


Q ss_pred             eee-ecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCC
Q 044320           78 SIV-VKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKAR  131 (176)
Q Consensus        78 ~~~-~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~R  131 (176)
                      .+. |+......++.++|||||||++|||.+ +..||.                        ..+.+++.+||+.+|.+|
T Consensus       198 ~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~P~~R  277 (299)
T d1jpaa_         198 RWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHR  277 (299)
T ss_dssp             GGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTS
T ss_pred             cccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCCHhHC
Confidence            333 443447789999999999999999987 666653                        358899999999999999


Q ss_pred             CCHHHHHHHHHhhhh
Q 044320          132 PSMLEVARQLENISS  146 (176)
Q Consensus       132 p~~~~i~~~l~~~~~  146 (176)
                      ||+.++++.|+++..
T Consensus       278 Ps~~ei~~~L~~~l~  292 (299)
T d1jpaa_         278 PKFGQIVNTLDKMIR  292 (299)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhc
Confidence            999999999998765

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-34  Score=211.56  Aligned_cols=138  Identities=20%  Similarity=0.286  Sum_probs=114.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~   82 (176)
                      +..+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++.......   ....+...+.+|
T Consensus       103 ~~~l~~~~~~~i~~qi~~gl~~lH~~~---ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~AP  179 (272)
T d1qpca_         103 GIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAP  179 (272)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCccchhheeeecccceeeccccceEEccCCccccccccCCcccccCh
Confidence            346999999999999999999999999   99999999999999999999999999987654332   223344444444


Q ss_pred             CC-CCCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           83 GT-HTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        83 ~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +. ....++.++|||||||++|||.++..++                         ++.+.+++.+||+.+|++|||+++
T Consensus       180 E~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~e  259 (272)
T d1qpca_         180 EAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDY  259 (272)
T ss_dssp             HHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCcccChHHHHHHHHHHcCCCHhHCcCHHH
Confidence            43 4567899999999999999998754332                         235899999999999999999999


Q ss_pred             HHHHHHhhhh
Q 044320          137 VARQLENISS  146 (176)
Q Consensus       137 i~~~l~~~~~  146 (176)
                      +++.|+.+.+
T Consensus       260 i~~~L~~~ft  269 (272)
T d1qpca_         260 LRSVLEDFFT  269 (272)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHhhhhhh
Confidence            9999998765

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-34  Score=213.18  Aligned_cols=140  Identities=23%  Similarity=0.319  Sum_probs=116.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Cccccceee
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHVSIV   80 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~   80 (176)
                      +....+++..++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++........   ...++..+.
T Consensus       107 ~~~~~~~~~~~~~i~~qi~~gL~yLH~~~---iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~  183 (287)
T d1opja_         107 CNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT  183 (287)
T ss_dssp             SCTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEECGGGC
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHCC---cccCccccCeEEECCCCcEEEccccceeecCCCCceeecccccccccc
Confidence            34567999999999999999999999999   999999999999999999999999999876544322   223444444


Q ss_pred             ecC-CCCCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKG-THTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +|+ .....++.++|||||||++|||.++..++                         ++.+.+++.+||+.+|++|||+
T Consensus       184 aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~  263 (287)
T d1opja_         184 APESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSF  263 (287)
T ss_dssp             CHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             ChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCH
Confidence            444 45778999999999999999997754432                         2358999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 044320          135 LEVARQLENISS  146 (176)
Q Consensus       135 ~~i~~~l~~~~~  146 (176)
                      .++++.|+.+..
T Consensus       264 ~ei~~~L~~~~~  275 (287)
T d1opja_         264 AEIHQAFETMFQ  275 (287)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHH
Confidence            999999987654

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-34  Score=209.26  Aligned_cols=139  Identities=22%  Similarity=0.316  Sum_probs=107.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Cccccceee-
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHVSIV-   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~-   80 (176)
                      .+..+++++++.++.|++.||+|+|+++   ++||||||+||+++.++.+||+|||+++........   ...+...+. 
T Consensus        94 ~~~~~~~~~~~~i~~qia~gl~~lH~~~---iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~a  170 (263)
T d1sm2a_          94 QRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWAS  170 (263)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCTTCSGGGEEECGGGCEEECSCC------------------CTTSCC
T ss_pred             cccCCCHHHHHHHHHHHHHHHHhhhccc---eeecccchhheeecCCCCeEecccchheeccCCCceeecceecCcccCC
Confidence            4567999999999999999999999999   999999999999999999999999999876543322   223334344 


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhcc-ChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGLY-SFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~~-~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+......++.++|||||||++|||.++ ..++                        +.++.+++.+||+.+|++|||++
T Consensus       171 PE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~  250 (263)
T d1sm2a_         171 PEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFS  250 (263)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHccCCHhHCcCHH
Confidence            4444577899999999999999999874 3322                        23588999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 044320          136 EVARQLENISS  146 (176)
Q Consensus       136 ~i~~~l~~~~~  146 (176)
                      ++++.|+++.+
T Consensus       251 ~il~~L~~i~e  261 (263)
T d1sm2a_         251 RLLRQLAEIAE  261 (263)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-33  Score=209.31  Aligned_cols=140  Identities=21%  Similarity=0.300  Sum_probs=110.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----CCcccccee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----NGVVGHVSI   79 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~   79 (176)
                      ....+++.+++.++.|++.||+|||+++   ++||||||+|||++.++.+||+|||+++.......     ....|+..|
T Consensus       103 ~~~~~~~~~~~~i~~~i~~gl~~lH~~~---iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y  179 (283)
T d1mqba_         103 KDGEFSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRW  179 (283)
T ss_dssp             TTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGG
T ss_pred             ccccccHHHHHHHHHHHHHhhhhccccc---cccCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccc
Confidence            4567999999999999999999999999   99999999999999999999999999987543221     122344444


Q ss_pred             eecC-CCCCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCCC
Q 044320           80 VVKG-THTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        80 ~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      .+|+ .....++.++|||||||++|||.++..++                         +..+.+++.+||+.+|++||+
T Consensus       180 ~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt  259 (283)
T d1mqba_         180 TAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPK  259 (283)
T ss_dssp             SCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCC
T ss_pred             cCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhccCCCCCchhhHHHHHHHHHHHCcCCHhHCcC
Confidence            4444 45788999999999999999997743332                         235899999999999999999


Q ss_pred             HHHHHHHHHhhhhc
Q 044320          134 MLEVARQLENISSM  147 (176)
Q Consensus       134 ~~~i~~~l~~~~~~  147 (176)
                      +.++++.|+++...
T Consensus       260 ~~eil~~L~~l~~~  273 (283)
T d1mqba_         260 FADIVSILDKLIRA  273 (283)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999987763

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-34  Score=209.25  Aligned_cols=131  Identities=24%  Similarity=0.287  Sum_probs=115.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      ...+++.++..++.|++.||+|||+++   |+||||||+||+++.++.+||+|||+++...........|+..+.+|+..
T Consensus       100 ~~~l~e~~~~~i~~qi~~al~~lH~~~---ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~APE~~  176 (263)
T d2j4za1         100 LSKFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMI  176 (263)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCCEETTEEGGGCCHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeeeeccccceecCCCCEeecccceeeecCCCcccccCCCCcccCHHHH
Confidence            457999999999999999999999999   99999999999999999999999999987766555555677766666554


Q ss_pred             -CCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           86 -TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        86 -~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                       +..++.++||||+||++|+|.++..||.                       +.+.+++.+||..+|++|||+.++++
T Consensus       177 ~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         177 EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             TTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             cCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHHc
Confidence             6678999999999999999999888763                       35889999999999999999999986

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=207.85  Aligned_cols=133  Identities=20%  Similarity=0.349  Sum_probs=115.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC-CCCCeEEeecCCcccCCCCCCCCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD-SKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~-~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~   84 (176)
                      ...+++++++.++.|++.||+|||+++ ++|+||||||+||+++ .++.+||+|||+++...........|++.+.+|+.
T Consensus       106 ~~~~~~~~~~~~~~qi~~gl~yLH~~~-~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~~~~~~GT~~Y~aPE~  184 (270)
T d1t4ha_         106 FKVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEM  184 (270)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGG
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHCC-CCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCccCCcccCccccCHHH
Confidence            457999999999999999999999873 4599999999999996 47899999999998766555555567778888888


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLEVA  138 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~i~  138 (176)
                      ....++.++||||+||++|+|.++..||.                          .++.+++.+||..+|++|||+++++
T Consensus       185 ~~~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell  264 (270)
T d1t4ha_         185 YEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL  264 (270)
T ss_dssp             GGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred             hCCCCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhHCcCHHHHh
Confidence            77789999999999999999999887763                          2488999999999999999999987


Q ss_pred             H
Q 044320          139 R  139 (176)
Q Consensus       139 ~  139 (176)
                      +
T Consensus       265 ~  265 (270)
T d1t4ha_         265 N  265 (270)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.3e-33  Score=210.16  Aligned_cols=138  Identities=20%  Similarity=0.273  Sum_probs=108.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~   81 (176)
                      +..+++.+++.++.|++.||+|||+++   |+||||||+||+++.++.+||+|||+++.......    ....|+..+.+
T Consensus       128 ~~~l~~~~~~~~~~qi~~gl~ylH~~~---ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~A  204 (299)
T d1ywna1         128 KDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA  204 (299)
T ss_dssp             --CBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCC
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhCC---CcCCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccc
Confidence            456899999999999999999999999   99999999999999999999999999976543321    22345555555


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhccC-hHH-------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGLYS-FEY-------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~-~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      |+ ..+..++.++|||||||++|||+++. .||                         +.++.+++.+||+.+|++|||+
T Consensus       205 PE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~  284 (299)
T d1ywna1         205 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTF  284 (299)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             hhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCH
Confidence            44 45778899999999999999997653 333                         2358899999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 044320          135 LEVARQLENISS  146 (176)
Q Consensus       135 ~~i~~~l~~~~~  146 (176)
                      .++++.|+++..
T Consensus       285 ~eil~~L~~ilq  296 (299)
T d1ywna1         285 SELVEHLGNLLQ  296 (299)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9.6e-34  Score=213.16  Aligned_cols=133  Identities=20%  Similarity=0.206  Sum_probs=111.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceeeec
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIVVK   82 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~~   82 (176)
                      ..+++.+++.++.|++.||+|||+++   |+||||||+||+++.++.+||+|||+++........    ...++..+.+|
T Consensus       159 ~~l~~~~~~~i~~qi~~gl~yLH~~~---IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aP  235 (325)
T d1rjba_         159 NVLTFEDLLCFAYQVAKGMEFLEFKS---CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAP  235 (325)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHTT---EEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCCh
Confidence            46899999999999999999999999   999999999999999999999999999875543321    22334444444


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhc-cChHHH-------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL-------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      + .....++.++|||||||++|||++ +..||.                         +.+.+++.+||+.+|++|||++
T Consensus       236 E~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~  315 (325)
T d1rjba_         236 ESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFP  315 (325)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHH
Confidence            4 457889999999999999999986 666653                         3589999999999999999999


Q ss_pred             HHHHHHH
Q 044320          136 EVARQLE  142 (176)
Q Consensus       136 ~i~~~l~  142 (176)
                      +|++.|.
T Consensus       316 ei~~~L~  322 (325)
T d1rjba_         316 NLTSFLG  322 (325)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999986

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.2e-33  Score=207.64  Aligned_cols=140  Identities=16%  Similarity=0.228  Sum_probs=115.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----CCcccccee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----NGVVGHVSI   79 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~   79 (176)
                      .+..+++.++..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++.......     ....+...+
T Consensus       102 ~~~~l~~~~~~~i~~qi~~gL~ylH~~~---iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y  178 (285)
T d1u59a_         102 KREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKW  178 (285)
T ss_dssp             CTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGG
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCcCchhheeeccCCceeeccchhhhcccccccccccccccccCccc
Confidence            4567999999999999999999999999   99999999999999999999999999987654321     122233334


Q ss_pred             -eecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCC
Q 044320           80 -VVKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        80 -~~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~  133 (176)
                       +|+......++.++|||||||++|||++ +..||.                        .++.+++.+||..+|++||+
T Consensus       179 ~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~RPs  258 (285)
T d1u59a_         179 YAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPD  258 (285)
T ss_dssp             CCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCC
T ss_pred             cChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCCHhHCcC
Confidence             4444446778999999999999999987 666652                        35889999999999999999


Q ss_pred             HHHHHHHHHhhhhc
Q 044320          134 MLEVARQLENISSM  147 (176)
Q Consensus       134 ~~~i~~~l~~~~~~  147 (176)
                      |.++++.|+.....
T Consensus       259 ~~~i~~~L~~~~~~  272 (285)
T d1u59a_         259 FLTVEQRMRACYYS  272 (285)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999876543

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-33  Score=206.00  Aligned_cols=140  Identities=23%  Similarity=0.265  Sum_probs=107.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC---CCccccceeee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI---NGVVGHVSIVV   81 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~   81 (176)
                      ....+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.+|++|||+++.......   ....++..+.+
T Consensus       101 ~~~~l~~~~~~~~~~qi~~gl~ylH~~~---iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~a  177 (273)
T d1mp8a_         101 RKYSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMA  177 (273)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCC
T ss_pred             cCCCCCHHHHHHHHHHHHHHhhhhcccC---eeccccchhheeecCCCcEEEccchhheeccCCcceeccceecCcccch
Confidence            4567999999999999999999999999   99999999999999999999999999987543322   12234444444


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+ .....++.++|||||||++|||++ +..||                        ++.+.+++.+||..+|++|||+.
T Consensus       178 pE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~  257 (273)
T d1mp8a_         178 PESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFT  257 (273)
T ss_dssp             HHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHH
Confidence            44 446789999999999999999976 55554                        24689999999999999999999


Q ss_pred             HHHHHHHhhhhc
Q 044320          136 EVARQLENISSM  147 (176)
Q Consensus       136 ~i~~~l~~~~~~  147 (176)
                      ++++.|+.+...
T Consensus       258 ei~~~L~~i~~~  269 (273)
T d1mp8a_         258 ELKAQLSTILEE  269 (273)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987653

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.1e-33  Score=204.91  Aligned_cols=130  Identities=22%  Similarity=0.252  Sum_probs=111.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKGT   84 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~~   84 (176)
                      ..+++.++..++.|++.||+|||+++   |+||||||+||+++.++.+||+|||+++......  .....|+..+.+|+.
T Consensus       111 ~~l~~~~~~~i~~qi~~aL~yLH~~~---iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~  187 (293)
T d1yhwa1         111 TCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV  187 (293)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCC---CcccCCcHHHeEECCCCcEeeccchhheeeccccccccccccCCCccChhh
Confidence            46999999999999999999999999   9999999999999999999999999998764332  233446666665554


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                       .+..++.++||||+||++|+|++|..||.                          ..+.+++.+||..+|.+|||+.++
T Consensus       188 ~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~ei  267 (293)
T d1yhwa1         188 VTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKEL  267 (293)
T ss_dssp             HSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             hcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence             46778999999999999999999888763                          248899999999999999999998


Q ss_pred             HH
Q 044320          138 AR  139 (176)
Q Consensus       138 ~~  139 (176)
                      ++
T Consensus       268 l~  269 (293)
T d1yhwa1         268 LQ  269 (293)
T ss_dssp             TT
T ss_pred             hc
Confidence            75

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-33  Score=206.37  Aligned_cols=138  Identities=20%  Similarity=0.225  Sum_probs=113.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-----CCcccccee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-----NGVVGHVSI   79 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-----~~~~~~~~~   79 (176)
                      ....+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.+|++|||+++.......     ....++..+
T Consensus       100 ~~~~l~~~~~~~i~~qi~~gl~ylH~~~---iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y  176 (277)
T d1xbba_         100 QNRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKW  176 (277)
T ss_dssp             HCTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGG
T ss_pred             hccCCCHHHHHHHHHHHHHHHhhHHhCC---cccCCCcchhhcccccCcccccchhhhhhccccccccccccccCCCcee
Confidence            3567999999999999999999999999   99999999999999999999999999986543321     112344434


Q ss_pred             eecC-CCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCC
Q 044320           80 VVKG-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        80 ~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      .+|+ .....++.++|||||||++|||++ +..||.                        .++.+++.+||..+|++|||
T Consensus       177 ~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp~~RPs  256 (277)
T d1xbba_         177 YAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPG  256 (277)
T ss_dssp             CCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCC
T ss_pred             cCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCCHhHCcC
Confidence            4443 446778999999999999999986 666652                        35889999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 044320          134 MLEVARQLENIS  145 (176)
Q Consensus       134 ~~~i~~~l~~~~  145 (176)
                      +++|++.|+...
T Consensus       257 ~~~i~~~L~~~~  268 (277)
T d1xbba_         257 FAAVELRLRNYY  268 (277)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhCHH
Confidence            999999887653

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-33  Score=203.78  Aligned_cols=132  Identities=23%  Similarity=0.295  Sum_probs=110.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~   80 (176)
                      .+..+++.++..++.|++.||+|||+++   |+||||||+||+++.++.+||+|||+++......    .....|+..+.
T Consensus        96 ~~~~l~e~~~~~i~~qi~~al~ylH~~~---IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~  172 (271)
T d1nvra_          96 PDIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYV  172 (271)
T ss_dssp             TTTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGS
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHcC---CccCcccHHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCcc
Confidence            3457999999999999999999999999   9999999999999999999999999998654322    23345677777


Q ss_pred             ecCCC-CCCC-CcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCC
Q 044320           81 VKGTH-TQQL-TEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARP  132 (176)
Q Consensus        81 ~~~~~-~~~~-~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +|+.. ...+ +.++||||+||++|+|+++..||.                          ..+.+++.+||..+|++||
T Consensus       173 APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~  252 (271)
T d1nvra_         173 APELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARI  252 (271)
T ss_dssp             CTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSC
T ss_pred             CHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHcCCChhHCc
Confidence            77654 4554 578999999999999988877652                          3578999999999999999


Q ss_pred             CHHHHHH
Q 044320          133 SMLEVAR  139 (176)
Q Consensus       133 ~~~~i~~  139 (176)
                      |++++++
T Consensus       253 t~~eil~  259 (271)
T d1nvra_         253 TIPDIKK  259 (271)
T ss_dssp             CHHHHTT
T ss_pred             CHHHHhc
Confidence            9998864

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-33  Score=210.94  Aligned_cols=132  Identities=20%  Similarity=0.303  Sum_probs=111.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~   84 (176)
                      ...+++.++..++.|++.||.|||+ ++   |+||||||+|||++.++.+||+|||+++...........|+.+|.+|+.
T Consensus        98 ~~~l~~~~~~~~~~qil~aL~yLH~~~~---IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~GT~~Y~APEv  174 (322)
T d1s9ja_          98 AGRIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPER  174 (322)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHHHC---CCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHTC---CCSSCCCCHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHhCC---EEccccCHHHeeECCCCCEEEeeCCCccccCCCccccccCCccccCchH
Confidence            3569999999999999999999997 48   9999999999999999999999999998654444444566666666655


Q ss_pred             C-CCCCCcccchhhHhHHHHHHhccChHHH--------------------------------------------------
Q 044320           85 H-TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------------------------------  113 (176)
Q Consensus        85 ~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------------------------------  113 (176)
                      . +..++.++||||+||++|||.++..||.                                                  
T Consensus       175 l~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (322)
T d1s9ja_         175 LQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELL  254 (322)
T ss_dssp             HHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC------------------------------CCCCHHHHH
T ss_pred             HcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHH
Confidence            4 7789999999999999999998876651                                                  


Q ss_pred             -----------------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 -----------------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 -----------------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                       .++.+++.+||..||++|||++++++.
T Consensus       255 ~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~H  298 (322)
T d1s9ja_         255 DYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH  298 (322)
T ss_dssp             HHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             hhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence                             246789999999999999999999873

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=3.3e-33  Score=208.21  Aligned_cols=137  Identities=22%  Similarity=0.298  Sum_probs=112.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~   81 (176)
                      ...|++.+++.|+.|++.||+|+|+++   ++||||||+||+++.++.+||+|||+++.......    ....+...+.+
T Consensus       134 ~~~l~~~~~~~i~~qi~~gl~ylH~~~---ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~a  210 (301)
T d1lufa_         134 PPPLSCAEQLCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMP  210 (301)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhhcccCC---eEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCC
Confidence            456999999999999999999999999   99999999999999999999999999875433221    12233344444


Q ss_pred             cC-CCCCCCCcccchhhHhHHHHHHhccC-hHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           82 KG-THTQQLTEKSDIYGLGIACLYMGLYS-FEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 ~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~-~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+ .....++.++|||||||++|||+++. .||                        +.++.+++.+||+.+|++||||.
T Consensus       211 PE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~~~~v~~~~~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~  290 (301)
T d1lufa_         211 PESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFC  290 (301)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHH
Confidence            44 44778999999999999999997764 333                        23589999999999999999999


Q ss_pred             HHHHHHHhhh
Q 044320          136 EVARQLENIS  145 (176)
Q Consensus       136 ~i~~~l~~~~  145 (176)
                      +|++.|+++.
T Consensus       291 ev~~~L~~i~  300 (301)
T d1lufa_         291 SIHRILQRMC  300 (301)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhc
Confidence            9999999874

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-33  Score=205.77  Aligned_cols=138  Identities=22%  Similarity=0.304  Sum_probs=109.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCCC
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHT   86 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (176)
                      ..+++.+++.++.|++.||.|||+.+   ++||||||+||+++.++.++++|||+++..............+.+|+...+
T Consensus        98 ~~l~~~~~~~i~~~i~~al~ylH~~~---ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~  174 (262)
T d1byga_          98 SVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALRE  174 (262)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhccccccCc---eeccccchHhheecCCCCEeecccccceecCCCCccccccccCCChHHHhC
Confidence            45899999999999999999999998   999999999999999999999999999875544333322233444554557


Q ss_pred             CCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHHHHHHHH
Q 044320           87 QQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSMLEVARQL  141 (176)
Q Consensus        87 ~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l  141 (176)
                      ..++.++||||||+++|||.+ +..|+                        +..+.+++.+||..||.+|||+.++++.|
T Consensus       175 ~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~L  254 (262)
T d1byga_         175 KKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQL  254 (262)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHHHH
Confidence            789999999999999999986 45433                        24689999999999999999999999999


Q ss_pred             Hhhhhc
Q 044320          142 ENISSM  147 (176)
Q Consensus       142 ~~~~~~  147 (176)
                      +++.+.
T Consensus       255 ~~i~~~  260 (262)
T d1byga_         255 EHIKTH  260 (262)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            988764

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-32  Score=200.21  Aligned_cols=136  Identities=19%  Similarity=0.289  Sum_probs=114.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Cccccceeee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHVSIVV   81 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~   81 (176)
                      ....+++..+++++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++........   ...++..+.+
T Consensus        93 ~~~~~~~~~~~~i~~qi~~gl~~LH~~~---iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~a  169 (258)
T d1k2pa_          93 MRHRFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSP  169 (258)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHHHHHTT---BCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCC
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHHhhcC---cccccccceeEEEcCCCcEEECcchhheeccCCCceeecccCCCCCcCC
Confidence            4557899999999999999999999999   999999999999999999999999999865544322   2234444444


Q ss_pred             cCC-CCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           82 KGT-HTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 ~~~-~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+. ....++.++||||||+++|||.+ +..||.                        ..+.+++.+||+.+|++|||++
T Consensus       170 PE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~  249 (258)
T d1k2pa_         170 PEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFK  249 (258)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHH
T ss_pred             cHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccccHHHHHHHHHHccCCHhHCcCHH
Confidence            444 46788999999999999999987 566652                        3589999999999999999999


Q ss_pred             HHHHHHHh
Q 044320          136 EVARQLEN  143 (176)
Q Consensus       136 ~i~~~l~~  143 (176)
                      ++++.|..
T Consensus       250 eil~~L~d  257 (258)
T d1k2pa_         250 ILLSNILD  257 (258)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhC
Confidence            99999864

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6e-33  Score=205.20  Aligned_cols=141  Identities=21%  Similarity=0.268  Sum_probs=111.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Ccccccee-e
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHVSI-V   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~-~   80 (176)
                      ....+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++........   ...+...+ +
T Consensus       106 ~~~~l~~~~~~~i~~~i~~gl~~LH~~~---ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~a  182 (285)
T d1fmka3         106 TGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTA  182 (285)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSC
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHhhhh---eecccccceEEEECCCCcEEEcccchhhhccCCCceeeccccccccccC
Confidence            3456999999999999999999999999   999999999999999999999999999765433211   12233333 4


Q ss_pred             ecCCCCCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGTHTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      |+......++.++||||||+++|||.++..++                         ++++.+++.+||+.+|++||+++
T Consensus       183 PE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~  262 (285)
T d1fmka3         183 PEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE  262 (285)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccCHHHHHHHHHHcccCHhHCcCHH
Confidence            44445778899999999999999997754332                         24689999999999999999999


Q ss_pred             HHHHHHHhhhhcC
Q 044320          136 EVARQLENISSML  148 (176)
Q Consensus       136 ~i~~~l~~~~~~~  148 (176)
                      +|++.|+......
T Consensus       263 ~i~~~L~~~~~~~  275 (285)
T d1fmka3         263 YLQAFLEDYFTST  275 (285)
T ss_dssp             HHHHHHHTTTSCS
T ss_pred             HHHHHHhhhhcCC
Confidence            9999999866554

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.6e-33  Score=207.90  Aligned_cols=139  Identities=18%  Similarity=0.285  Sum_probs=114.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~   80 (176)
                      .+..+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++........    ...|+..+.
T Consensus       104 ~~~~~~~~~~~~i~~qi~~gl~yLH~~~---iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~  180 (317)
T d1xkka_         104 HKDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM  180 (317)
T ss_dssp             TSSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTS
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHcC---cccCcchhhcceeCCCCCeEeeccccceecccccccccccccccCcccc
Confidence            4567999999999999999999999999   999999999999999999999999999875433221    223444444


Q ss_pred             ecC-CCCCCCCcccchhhHhHHHHHHhc-cChHHH------------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           81 VKG-THTQQLTEKSDIYGLGIACLYMGL-YSFEYL------------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        81 ~~~-~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~------------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +|+ .....++.++|||||||++|||.+ +..||.                        ..+.+++.+||..+|.+|||+
T Consensus       181 APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~  260 (317)
T d1xkka_         181 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKF  260 (317)
T ss_dssp             CHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             ChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHhCCCChhhCcCH
Confidence            444 457789999999999999999987 555542                        358899999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 044320          135 LEVARQLENISS  146 (176)
Q Consensus       135 ~~i~~~l~~~~~  146 (176)
                      .++++.|.++..
T Consensus       261 ~eil~~l~~~~~  272 (317)
T d1xkka_         261 RELIIEFSKMAR  272 (317)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-32  Score=203.09  Aligned_cols=138  Identities=19%  Similarity=0.245  Sum_probs=115.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~   81 (176)
                      ...+++.+++.++.|++.||+|||+++   ++||||||+|||++.++.+||+|||+++.......    ....+...+.+
T Consensus       129 ~~~l~~~~~~~~~~qi~~al~ylH~~~---ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  205 (299)
T d1fgka_         129 EEQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMA  205 (299)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSC
T ss_pred             cccCCHHHHHHHHHHHHHHHHHhhhCC---EEeeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhh
Confidence            456999999999999999999999999   99999999999999999999999999886543321    12334444444


Q ss_pred             -cCCCCCCCCcccchhhHhHHHHHHhc-cChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           82 -KGTHTQQLTEKSDIYGLGIACLYMGL-YSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        82 -~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                       +......++.++||||||+++|||++ +..||                        +..+.+++.+||+.+|.+|||+.
T Consensus       206 PE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~  285 (299)
T d1fgka_         206 PEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK  285 (299)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHccCCHhHCcCHH
Confidence             33457889999999999999999986 45443                        23589999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 044320          136 EVARQLENISS  146 (176)
Q Consensus       136 ~i~~~l~~~~~  146 (176)
                      ++++.|+++..
T Consensus       286 eil~~L~~i~a  296 (299)
T d1fgka_         286 QLVEDLDRIVA  296 (299)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998865

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1.6e-32  Score=205.06  Aligned_cols=130  Identities=22%  Similarity=0.334  Sum_probs=111.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT   84 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~   84 (176)
                      .+..+++.++..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++......  ...|+..|.+|+.
T Consensus       108 ~~~~l~e~~~~~i~~qi~~aL~yLH~~~---iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~~--~~~GT~~Y~APE~  182 (309)
T d1u5ra_         108 HKKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPAN--SFVGTPYWMAPEV  182 (309)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBC--CCCSCGGGCCHHH
T ss_pred             hCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeccCCCcceEEECCCCCEEEeecccccccCCCC--ccccCccccCHHH
Confidence            3567999999999999999999999999   9999999999999999999999999998755432  3346666666664


Q ss_pred             C----CCCCCcccchhhHhHHHHHHhccChHHH-------------------------HHHHHHHHhhcccCCCCCCCHH
Q 044320           85 H----TQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------KRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        85 ~----~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      .    ...++.++|||||||++|+|.++..||.                         ..+.+++.+||..+|.+|||++
T Consensus       183 ~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~  262 (309)
T d1u5ra_         183 ILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSE  262 (309)
T ss_dssp             HTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHCcCChhHCcCHH
Confidence            3    3568999999999999999988887763                         3588999999999999999999


Q ss_pred             HHHH
Q 044320          136 EVAR  139 (176)
Q Consensus       136 ~i~~  139 (176)
                      ++++
T Consensus       263 ell~  266 (309)
T d1u5ra_         263 VLLK  266 (309)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            9876

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.8e-33  Score=204.36  Aligned_cols=132  Identities=21%  Similarity=0.256  Sum_probs=109.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~   82 (176)
                      .+..+++.++..++.|++.||.|||+++   |+||||||+||+++.++.+||+|||+++......  .....|+..+.+|
T Consensus       103 ~~~~l~e~~~~~i~~qi~~gL~ylH~~~---ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~AP  179 (288)
T d2jfla1         103 LERPLTESQIQVVCKQTLDALNYLHDNK---IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAP  179 (288)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEEeecChhheeECCCCCEEEEechhhhccCCCcccccccccccccCCH
Confidence            3567999999999999999999999999   9999999999999999999999999987543221  1223445555555


Q ss_pred             CC------CCCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCC
Q 044320           83 GT------HTQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKA  130 (176)
Q Consensus        83 ~~------~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~  130 (176)
                      +.      ....++.++||||+||++|+|.++..||.                          .++.+++.+||+.||++
T Consensus       180 E~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~  259 (288)
T d2jfla1         180 EVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDA  259 (288)
T ss_dssp             HHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTT
T ss_pred             HHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHccCChhH
Confidence            43      25568899999999999999988887763                          35889999999999999


Q ss_pred             CCCHHHHHH
Q 044320          131 RPSMLEVAR  139 (176)
Q Consensus       131 Rp~~~~i~~  139 (176)
                      |||+.++++
T Consensus       260 R~t~~ell~  268 (288)
T d2jfla1         260 RWTTSQLLQ  268 (288)
T ss_dssp             SCCHHHHTT
T ss_pred             CcCHHHHhc
Confidence            999999865

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-32  Score=203.02  Aligned_cols=142  Identities=21%  Similarity=0.250  Sum_probs=116.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-Ccccc-ceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-GVVGH-VSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~-~~~~~~   82 (176)
                      ....|++.+++.++.|++.||.|+|+++   ++||||||+|||++.++.+||+|||+++........ ...+. .+.+|+
T Consensus       120 ~~~~l~~~~~~~~~~qia~gl~~lH~~~---iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE  196 (309)
T d1fvra_         120 TASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIE  196 (309)
T ss_dssp             BSCSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHhhhcCC---ccccccccceEEEcCCCceEEccccccccccccccccceecCCcccchH
Confidence            3567999999999999999999999999   999999999999999999999999998765433322 22233 344455


Q ss_pred             CCCCCCCCcccchhhHhHHHHHHhccCh-HH------------------------HHHHHHHHHhhcccCCCCCCCHHHH
Q 044320           83 GTHTQQLTEKSDIYGLGIACLYMGLYSF-EY------------------------LKRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        83 ~~~~~~~~~~~Dv~s~G~~l~~l~~~~~-~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      ......++.++||||||+++|||+++.. +|                        ++++.+++.+||..+|++||++.++
T Consensus       197 ~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~ei  276 (309)
T d1fvra_         197 SLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQI  276 (309)
T ss_dssp             HHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             HhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence            5557788999999999999999987543 33                        2368999999999999999999999


Q ss_pred             HHHHHhhhhcCC
Q 044320          138 ARQLENISSMLP  149 (176)
Q Consensus       138 ~~~l~~~~~~~~  149 (176)
                      ++.|+++.....
T Consensus       277 l~~L~~i~~~~~  288 (309)
T d1fvra_         277 LVSLNRMLEERK  288 (309)
T ss_dssp             HHHHHHHHHSSS
T ss_pred             HHHHHHHHhcCc
Confidence            999999887543

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-32  Score=202.28  Aligned_cols=136  Identities=20%  Similarity=0.262  Sum_probs=111.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC-----Ccccccee-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN-----GVVGHVSI-   79 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~-   79 (176)
                      ...+++..++.++.|++.||.|||+++   ++||||||+||+++.++.+|++|||+++........     ...+..++ 
T Consensus       105 ~~~l~~~~~~~~~~qi~~gl~ylH~~~---iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~  181 (273)
T d1u46a_         105 QGHFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWC  181 (273)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhhhCC---EeeeeecHHHhccccccceeeccchhhhhcccCCCcceecCccccCcccC
Confidence            346999999999999999999999999   999999999999999999999999999875443221     12233333 


Q ss_pred             eecCCCCCCCCcccchhhHhHHHHHHhc-cChHHH-------------------------HHHHHHHHhhcccCCCCCCC
Q 044320           80 VVKGTHTQQLTEKSDIYGLGIACLYMGL-YSFEYL-------------------------KRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        80 ~~~~~~~~~~~~~~Dv~s~G~~l~~l~~-~~~~~~-------------------------~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      +|+......++.++||||||+++|||.+ |..||.                         ..+.+++.+||..+|++|||
T Consensus       182 aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt  261 (273)
T d1u46a_         182 APESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPT  261 (273)
T ss_dssp             CHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             CHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHcCCChhHCcC
Confidence            3443446778889999999999999987 677763                         35889999999999999999


Q ss_pred             HHHHHHHHHhh
Q 044320          134 MLEVARQLENI  144 (176)
Q Consensus       134 ~~~i~~~l~~~  144 (176)
                      |.+|.+.|.+.
T Consensus       262 ~~ei~~~L~~~  272 (273)
T d1u46a_         262 FVALRDFLLEA  272 (273)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999988864

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.2e-32  Score=201.67  Aligned_cols=143  Identities=24%  Similarity=0.335  Sum_probs=117.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC------CCccccce
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI------NGVVGHVS   78 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~------~~~~~~~~   78 (176)
                      ....+++.+++.++.|++.||.|+|+.+   ++||||||+|||+++++.+||+|||+++.......      ....++..
T Consensus       123 ~~~~~~~~~~~~i~~qia~gL~~lH~~~---iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~  199 (311)
T d1r0pa_         123 ETHNPTVKDLIGFGLQVAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVK  199 (311)
T ss_dssp             TTCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGG
T ss_pred             ccccchHHHHHHHHHHHHHhhhhhcccC---cccCCccHHhEeECCCCCEEEecccchhhccccccccceeccccccccc
Confidence            4556889999999999999999999999   99999999999999999999999999986543321      11234444


Q ss_pred             eee-cCCCCCCCCcccchhhHhHHHHHHhccChHH-------------------------HHHHHHHHHhhcccCCCCCC
Q 044320           79 IVV-KGTHTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------LKRFMSLALKYCEDETKARP  132 (176)
Q Consensus        79 ~~~-~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +.+ +......++.++||||||+++|||.++..||                         ++.+.+++.+||..+|++||
T Consensus       200 y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~dP~~RP  279 (311)
T d1r0pa_         200 WMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRP  279 (311)
T ss_dssp             GSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             ccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCcccCcHHHHHHHHHHcCCCHhHCc
Confidence            444 4345778999999999999999998755543                         24689999999999999999


Q ss_pred             CHHHHHHHHHhhhhcCCC
Q 044320          133 SMLEVARQLENISSMLPE  150 (176)
Q Consensus       133 ~~~~i~~~l~~~~~~~~~  150 (176)
                      ++.+|++.|+.+......
T Consensus       280 s~~ei~~~L~~i~~~~~~  297 (311)
T d1r0pa_         280 SFSELVSRISAIFSTFIG  297 (311)
T ss_dssp             CHHHHHHHHHHHHHTCCS
T ss_pred             CHHHHHHHHHHHHHhhhh
Confidence            999999999999876443

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-32  Score=201.33  Aligned_cols=131  Identities=18%  Similarity=0.156  Sum_probs=112.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC-CCeEEeecCCcccCCCCCCCCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK-FTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~-~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~   84 (176)
                      +..+++++++.++.|++.||+|||+++   ++||||||+||+++.+ +.+|++|||+++...........|+..+.+|+.
T Consensus       104 ~~~l~e~~~~~~~~qi~~al~~lH~~~---iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~  180 (273)
T d1xwsa_         104 RGALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEW  180 (273)
T ss_dssp             HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCC---CccccCcccceEEecCCCeEEECccccceecccccccccccCCCcCCHHH
Confidence            467999999999999999999999999   9999999999999854 789999999998766655555567777777665


Q ss_pred             C-CCC-CCcccchhhHhHHHHHHhccChHHH-----------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320           85 H-TQQ-LTEKSDIYGLGIACLYMGLYSFEYL-----------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus        85 ~-~~~-~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                      . +.. ++.++||||+||++|+|+++..||.                 .++.+++.+||..||++|||++++++
T Consensus       181 ~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~i~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         181 IRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             HHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HcCCCCCCcccccccceeeehhHhhCCCCCCCchHHhhcccCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence            4 344 4677999999999999999988763                 46899999999999999999999876

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=7.3e-32  Score=205.54  Aligned_cols=131  Identities=17%  Similarity=0.134  Sum_probs=114.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      +..+++.+++.++.||+.||.|||+++   ++||||||+|||++.++.+||+|||+++...........|++.+.+|+..
T Consensus       101 ~~~~~e~~~~~~~~qi~~aL~ylH~~~---iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~~~~~~GT~~y~APE~~  177 (364)
T d1omwa3         101 HGVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVL  177 (364)
T ss_dssp             HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECSSSCEEECCCTTCEECSSSCCCSCCSCGGGCCHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHCC---ccceeeccceeEEcCCCcEEEeeeceeeecCCCcccccccccccchhHHh
Confidence            456899999999999999999999999   99999999999999999999999999987766665566677777776654


Q ss_pred             --CCCCCcccchhhHhHHHHHHhccChHHH--------------------------HHHHHHHHhhcccCCCCCCC----
Q 044320           86 --TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------KRFMSLALKYCEDETKARPS----  133 (176)
Q Consensus        86 --~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------~~l~~l~~~~~~~~p~~Rp~----  133 (176)
                        +..++.++||||+||++|+|++|..||.                          ..+.+++.+||..||.+||+    
T Consensus       178 ~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~  257 (364)
T d1omwa3         178 QKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGR  257 (364)
T ss_dssp             STTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSS
T ss_pred             hcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHHHcccCHHHhCCCccc
Confidence              4568999999999999999999888762                          35899999999999999999    


Q ss_pred             -HHHHHH
Q 044320          134 -MLEVAR  139 (176)
Q Consensus       134 -~~~i~~  139 (176)
                       ++++++
T Consensus       258 ~a~eil~  264 (364)
T d1omwa3         258 GAQEVKE  264 (364)
T ss_dssp             THHHHHT
T ss_pred             CHHHHHc
Confidence             577764

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-32  Score=201.21  Aligned_cols=135  Identities=21%  Similarity=0.271  Sum_probs=103.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCC--CCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEA--DPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~--~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~   80 (176)
                      .+..+++.+++.++.|++.||+|||+++  ...|+||||||+||+++.++.+||+|||+++......  .....|++.+.
T Consensus       102 ~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~  181 (269)
T d2java1         102 ERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYM  181 (269)
T ss_dssp             HTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC-----------CCCSCC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCCCccccCCCCcccC
Confidence            4567999999999999999999999853  1349999999999999999999999999998765432  22344556566


Q ss_pred             ecCC-CCCCCCcccchhhHhHHHHHHhccChHH------------------------HHHHHHHHHhhcccCCCCCCCHH
Q 044320           81 VKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEY------------------------LKRFMSLALKYCEDETKARPSML  135 (176)
Q Consensus        81 ~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~  135 (176)
                      +|+. ....++.++|||||||++|||.++..||                        ++++.+++.+||..||.+|||++
T Consensus       182 APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~s~~l~~li~~~L~~dp~~Rps~~  261 (269)
T d2java1         182 SPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVE  261 (269)
T ss_dssp             CHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHH
Confidence            5554 4678999999999999999998887665                        23589999999999999999999


Q ss_pred             HHHH
Q 044320          136 EVAR  139 (176)
Q Consensus       136 ~i~~  139 (176)
                      ++++
T Consensus       262 ell~  265 (269)
T d2java1         262 EILE  265 (269)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9875

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-31  Score=198.89  Aligned_cols=132  Identities=19%  Similarity=0.126  Sum_probs=110.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~   82 (176)
                      .+..+++.++..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++.......  ....++..+.+|
T Consensus        93 ~~~~l~~~~~~~~~~qil~aL~~lH~~~---iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aP  169 (299)
T d1ua2a_          93 NSLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAP  169 (299)
T ss_dssp             CCSSCCSSHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCH
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHhhccc---eecccCCcceEEecCCCccccccCccccccCCCcccccceecChhhccH
Confidence            4567999999999999999999999999   99999999999999999999999999977654332  223455556655


Q ss_pred             CCC--CCCCCcccchhhHhHHHHHHhccChHHH-----------------------------------------------
Q 044320           83 GTH--TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------------------------------  113 (176)
Q Consensus        83 ~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------------------------------  113 (176)
                      +..  ...++.++||||+||++|||.++..+|.                                               
T Consensus       170 E~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (299)
T d1ua2a_         170 ELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIF  249 (299)
T ss_dssp             HHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHC
T ss_pred             HHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhc
Confidence            543  4567999999999999999988875541                                               


Q ss_pred             ----HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 ----KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ----~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                          +.+.+++.+||..||++|||++++++
T Consensus       250 ~~~s~~~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         250 SAAGDDLLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             TTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             ccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence                35778999999999999999999876

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-31  Score=199.90  Aligned_cols=133  Identities=19%  Similarity=0.209  Sum_probs=111.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCCeEEeecCCcccCCCCC-CCCccccceee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS---KFTPKVFDFEISRLAPVPN-INGVVGHVSIV   80 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~---~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~   80 (176)
                      ....|++.++..++.|++.||+|||+++   ++||||||+||+++.   .+.+|++|||+++...... .....|++.+.
T Consensus       104 ~~~~l~e~~~~~i~~qi~~al~ylH~~~---iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~  180 (335)
T d2ozaa1         104 GDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYV  180 (335)
T ss_dssp             SCCCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCCCCCSCCCSSC
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHcC---CccccccccccccccccccccccccccceeeeccCCCccccccCCcccC
Confidence            3467999999999999999999999999   999999999999975   4679999999998755433 33345666666


Q ss_pred             ecCCC-CCCCCcccchhhHhHHHHHHhccChHH-------------------------------HHHHHHHHHhhcccCC
Q 044320           81 VKGTH-TQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------LKRFMSLALKYCEDET  128 (176)
Q Consensus        81 ~~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------~~~l~~l~~~~~~~~p  128 (176)
                      +|+.. +..++.++||||+||++|+|+++..||                               +.++.+++.+||..+|
T Consensus       181 aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  260 (335)
T d2ozaa1         181 APEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEP  260 (335)
T ss_dssp             CCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSST
T ss_pred             CcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCCh
Confidence            66654 667899999999999999998887665                               2358899999999999


Q ss_pred             CCCCCHHHHHHH
Q 044320          129 KARPSMLEVARQ  140 (176)
Q Consensus       129 ~~Rp~~~~i~~~  140 (176)
                      ++|||+.++++.
T Consensus       261 ~~R~s~~eil~h  272 (335)
T d2ozaa1         261 TQRMTITEFMNH  272 (335)
T ss_dssp             TTSCCHHHHHHS
T ss_pred             hHCcCHHHHHcC
Confidence            999999999873

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.2e-31  Score=199.37  Aligned_cols=131  Identities=19%  Similarity=0.242  Sum_probs=112.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      +..+++++++.++.|++.||+|||+++   ++||||||+||+++.+|.+||+|||+++......  .....|++.+.+|+
T Consensus        99 ~~~~~e~~~~~~~~qil~al~ylH~~~---iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE  175 (337)
T d1o6la_          99 ERVFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPE  175 (337)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGG
T ss_pred             ccCCcHHHHHHHHHHHhhhhhhhhhcC---ccccccCHHHeEecCCCCEEEeecccccccccCCcccccceeCHHHhhhh
Confidence            467999999999999999999999999   9999999999999999999999999998754432  23445677676666


Q ss_pred             CC-CCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCC-----H
Q 044320           84 TH-TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPS-----M  134 (176)
Q Consensus        84 ~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~-----~  134 (176)
                      .. +..++.++||||+||++|||++|..||.                       .++.+++.+||..||.+|++     +
T Consensus       176 ~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~  255 (337)
T d1o6la_         176 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDA  255 (337)
T ss_dssp             GGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTH
T ss_pred             hccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHhhccCCchhhcccccccH
Confidence            54 7789999999999999999998887752                       35889999999999999995     7


Q ss_pred             HHHHH
Q 044320          135 LEVAR  139 (176)
Q Consensus       135 ~~i~~  139 (176)
                      +++++
T Consensus       256 ~eil~  260 (337)
T d1o6la_         256 KEVME  260 (337)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            77766

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.1e-30  Score=198.10  Aligned_cols=130  Identities=16%  Similarity=0.163  Sum_probs=111.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC-
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT-   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~-   84 (176)
                      ...+++.+++.++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++....... ...|+..+.+|+. 
T Consensus       135 ~~~l~e~~~~~i~~qi~~aL~yLH~~~---iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~-~~~Gt~~Y~APE~~  210 (350)
T d1rdqe_         135 IGRFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW-TLCGTPEALAPEII  210 (350)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECSSCBC-CCEECGGGCCHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCcCCHHHcccCCCCCEEeeeceeeeecccccc-cccCccccCCHHHH
Confidence            357999999999999999999999999   99999999999999999999999999987654432 3445666665554 


Q ss_pred             CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCC-----CHHH
Q 044320           85 HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARP-----SMLE  136 (176)
Q Consensus        85 ~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp-----~~~~  136 (176)
                      .+..++.++||||+||++|+|+++..||.                       .++.+++.+||..||.+|+     ++++
T Consensus       211 ~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~e  290 (350)
T d1rdqe_         211 LSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVND  290 (350)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHH
T ss_pred             cCCCCCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHhhhCHHhccccccccHHH
Confidence            46778999999999999999999887762                       3589999999999999994     8888


Q ss_pred             HHH
Q 044320          137 VAR  139 (176)
Q Consensus       137 i~~  139 (176)
                      +++
T Consensus       291 ll~  293 (350)
T d1rdqe_         291 IKN  293 (350)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            875

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.3e-32  Score=199.62  Aligned_cols=131  Identities=20%  Similarity=0.233  Sum_probs=109.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC----CCCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN----INGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~~   81 (176)
                      +..+++.+++.++.|++.||+|||+++   |+||||||+||+++.++.+|++|||+++......    .....|+..+.+
T Consensus       102 ~~~l~e~~~~~~~~qi~~al~ylH~~~---iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~A  178 (288)
T d1uu3a_         102 IGSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVS  178 (288)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhhcccc---EEcCcCCccccccCCCceEEecccccceecccCCcccccccccCCccccC
Confidence            457999999999999999999999999   9999999999999999999999999998764322    222346666666


Q ss_pred             cCCC-CCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHHHH
Q 044320           82 KGTH-TQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSMLEV  137 (176)
Q Consensus        82 ~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~~i  137 (176)
                      |+.. +..++.++||||+||++|+|+++..||.                       .++.+++.+||..||.+|||++++
T Consensus       179 PE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~  258 (288)
T d1uu3a_         179 PELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEM  258 (288)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGG
T ss_pred             ceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHHcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence            6554 6788999999999999999988887762                       358899999999999999999986


Q ss_pred             HH
Q 044320          138 AR  139 (176)
Q Consensus       138 ~~  139 (176)
                      +.
T Consensus       259 ~~  260 (288)
T d1uu3a_         259 EG  260 (288)
T ss_dssp             TC
T ss_pred             cC
Confidence            54

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.97  E-value=2.5e-31  Score=201.75  Aligned_cols=132  Identities=14%  Similarity=0.182  Sum_probs=111.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC--CCCCeEEeecCCcccCCCCCCC-Cccccceeee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD--SKFTPKVFDFEISRLAPVPNIN-GVVGHVSIVV   81 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~--~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~   81 (176)
                      .+.+|++.+++.++.||+.||+|||+++   |+||||||+|||++  .++.+||+|||+++........ ...+...+.+
T Consensus       120 ~~~~l~e~~~~~i~~qi~~aL~ylH~~~---iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~~~~~gt~~y~a  196 (352)
T d1koba_         120 EDYKMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAA  196 (352)
T ss_dssp             TTCCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccccccccccccCCCeEEEeecccceecCCCCceeeccCcccccC
Confidence            4557999999999999999999999999   99999999999997  5689999999999876654322 2344555544


Q ss_pred             cCC-CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCCC
Q 044320           82 KGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        82 ~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      |+. .+..++.++||||+||++|+|+++..||.                           ..+.+++.+||..+|.+|||
T Consensus       197 PE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s  276 (352)
T d1koba_         197 PEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLT  276 (352)
T ss_dssp             HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCC
T ss_pred             HHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcC
Confidence            444 46778999999999999999998887762                           25789999999999999999


Q ss_pred             HHHHHH
Q 044320          134 MLEVAR  139 (176)
Q Consensus       134 ~~~i~~  139 (176)
                      +.++++
T Consensus       277 ~~eil~  282 (352)
T d1koba_         277 VHDALE  282 (352)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999976

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=2.3e-31  Score=198.57  Aligned_cols=132  Identities=14%  Similarity=0.206  Sum_probs=101.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeC---CCCCeEEeecCCcccCCCCCC-CCccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLD---SKFTPKVFDFEISRLAPVPNI-NGVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~---~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~   81 (176)
                      +..+++.++..++.|++.||+|||+++   ++||||||+||++.   .++.+|++|||+++....... ....|+..+.+
T Consensus       101 ~~~l~e~~~~~~~~qi~~al~ylH~~~---iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~A  177 (307)
T d1a06a_         101 KGFYTERDASRLIFQVLDAVKYLHDLG---IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVA  177 (307)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSTTCCEEECCC------------------CTTSC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhhhhce---eeeEEecccceeecccCCCceEEEeccceeEEccCCCeeeeeeeCccccC
Confidence            457999999999999999999999999   99999999999994   468999999999987654332 23346666655


Q ss_pred             cCC-CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCCC
Q 044320           82 KGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        82 ~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      |+. .+..++.++||||+||++|+|.++..||.                           ..+.+++.+||..+|.+|||
T Consensus       178 PE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s  257 (307)
T d1a06a_         178 PEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFT  257 (307)
T ss_dssp             HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             cHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhHCcC
Confidence            554 46778999999999999999988887762                           35789999999999999999


Q ss_pred             HHHHHHH
Q 044320          134 MLEVARQ  140 (176)
Q Consensus       134 ~~~i~~~  140 (176)
                      +.++++.
T Consensus       258 ~~eil~h  264 (307)
T d1a06a_         258 CEQALQH  264 (307)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9998763

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.6e-31  Score=196.20  Aligned_cols=134  Identities=19%  Similarity=0.173  Sum_probs=112.8

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeec
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVK   82 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~   82 (176)
                      .....+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+|++|||+++...... .....|+..+.+|
T Consensus       108 ~~~~~~~~~~~~~~~~qi~~aL~yLH~~~---ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~AP  184 (305)
T d1blxa_         108 VPEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAP  184 (305)
T ss_dssp             SCTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHhCC---EEecCCCccEEEEcCCCCeeecchhhhhhhcccccCCCcccChhhcCc
Confidence            34567999999999999999999999999   9999999999999999999999999987654333 2334456666655


Q ss_pred             C-CCCCCCCcccchhhHhHHHHHHhccChHHH------------------------------------------------
Q 044320           83 G-THTQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------------  113 (176)
Q Consensus        83 ~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------------  113 (176)
                      + .....++.++||||+||++|||.++..||.                                                
T Consensus       185 E~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (305)
T d1blxa_         185 EVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTD  264 (305)
T ss_dssp             HHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCS
T ss_pred             chhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhcccc
Confidence            5 457889999999999999999998887652                                                


Q ss_pred             --HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 --KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 --~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                        +.+.+++.+||..||++|||+.++++.
T Consensus       265 ~s~~~~dli~~mL~~dP~~R~sa~e~L~H  293 (305)
T d1blxa_         265 IDELGKDLLLKCLTFNPAKRISAYSALSH  293 (305)
T ss_dssp             CCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence              246789999999999999999998763

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-30  Score=195.41  Aligned_cols=139  Identities=20%  Similarity=0.246  Sum_probs=113.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC----Cccccceeee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN----GVVGHVSIVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~   81 (176)
                      ...+++.+++.++.||+.||+|||+++   ++||||||+||+++.++.++++|||.++........    ...+...+.+
T Consensus       139 ~~~l~~~~~~~~~~qi~~gl~~LH~~~---ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~a  215 (311)
T d1t46a_         139 ELALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMA  215 (311)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccccccccccccCcccccccchheeccCCCcceEeeecccChHHcC
Confidence            446999999999999999999999999   999999999999999999999999999876543322    2233333333


Q ss_pred             -cCCCCCCCCcccchhhHhHHHHHHhcc-ChHH-------------------------HHHHHHHHHhhcccCCCCCCCH
Q 044320           82 -KGTHTQQLTEKSDIYGLGIACLYMGLY-SFEY-------------------------LKRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        82 -~~~~~~~~~~~~Dv~s~G~~l~~l~~~-~~~~-------------------------~~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                       +......++.++|||||||++|||+++ .+++                         +..+.+++.+||+.+|++|||+
T Consensus       216 PE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~  295 (311)
T d1t46a_         216 PESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTF  295 (311)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccccHHHHHHHHHHcCCChhHCcCH
Confidence             334467889999999999999999873 3322                         2458899999999999999999


Q ss_pred             HHHHHHHHhhhhc
Q 044320          135 LEVARQLENISSM  147 (176)
Q Consensus       135 ~~i~~~l~~~~~~  147 (176)
                      .++++.|++....
T Consensus       296 ~~il~~L~~~i~~  308 (311)
T d1t46a_         296 KQIVQLIEKQISE  308 (311)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999987654

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-31  Score=197.56  Aligned_cols=134  Identities=19%  Similarity=0.193  Sum_probs=110.8

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeee
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVV   81 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~   81 (176)
                      +....+++.++..++.|++.||+|||+++   |+||||||+||+++.++.+|++|||+++......  .....+...+.+
T Consensus        94 ~~~~~l~e~~~~~~~~qil~~L~yLH~~~---IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~a  170 (298)
T d1gz8a_          94 SALTGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRA  170 (298)
T ss_dssp             TTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCC
T ss_pred             hcccCCCHHHHHHHHHHHHHHHHHhhcCC---EEccccCchheeecccCcceeccCCcceeccCCcccceeecccceeee
Confidence            34667999999999999999999999999   9999999999999999999999999997654332  222345555555


Q ss_pred             cCC-C-CCCCCcccchhhHhHHHHHHhccChHHH----------------------------------------------
Q 044320           82 KGT-H-TQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------------------------  113 (176)
Q Consensus        82 ~~~-~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------------------------  113 (176)
                      ++. . ...++.++|+||+||++|+|.+|..||.                                              
T Consensus       171 pE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (298)
T d1gz8a_         171 PEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSK  250 (298)
T ss_dssp             HHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHH
T ss_pred             hhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhh
Confidence            543 2 3445889999999999999999887751                                              


Q ss_pred             ------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 ------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 ------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                            .++.+++.+|+..||++|||++++++.
T Consensus       251 ~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H  283 (298)
T d1gz8a_         251 VVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH  283 (298)
T ss_dssp             HSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             hccCCCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence                  346789999999999999999999874

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.96  E-value=4.5e-31  Score=200.15  Aligned_cols=133  Identities=11%  Similarity=0.148  Sum_probs=111.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC--CCCeEEeecCCcccCCCCCCC-Cccccceeee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS--KFTPKVFDFEISRLAPVPNIN-GVVGHVSIVV   81 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~--~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~   81 (176)
                      .+..+++.++..++.||+.||.|||+++   ++||||||+||+++.  ++.+||+|||+++........ ...|+..+.+
T Consensus       117 ~~~~l~e~~~~~i~~qi~~aL~ylH~~~---iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~a  193 (350)
T d1koaa2         117 EHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAA  193 (350)
T ss_dssp             TTSCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCEEEECSCTTTCC
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHhcC---CeeeeechhHeeeccCCCCeEEEeecchheecccccccceecCcccccC
Confidence            3456999999999999999999999999   999999999999954  578999999999876544322 2345555655


Q ss_pred             cCC-CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCCC
Q 044320           82 KGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARPS  133 (176)
Q Consensus        82 ~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp~  133 (176)
                      |+. .+..++.++||||+||++|+|++|..||.                           +.+.+++.+||..||++|||
T Consensus       194 PEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t  273 (350)
T d1koaa2         194 PEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMT  273 (350)
T ss_dssp             HHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGGGSCC
T ss_pred             HHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcC
Confidence            554 46778999999999999999988877652                           35788999999999999999


Q ss_pred             HHHHHHH
Q 044320          134 MLEVARQ  140 (176)
Q Consensus       134 ~~~i~~~  140 (176)
                      ++++++.
T Consensus       274 ~~eil~h  280 (350)
T d1koaa2         274 IHQALEH  280 (350)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9999874

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.2e-30  Score=195.41  Aligned_cols=131  Identities=19%  Similarity=0.231  Sum_probs=111.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGT   84 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~   84 (176)
                      .+..+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++....... ...|+..+.+|+.
T Consensus        97 ~~~~~~~~~~~~~~~qi~~al~~lH~~~---iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~-~~~Gt~~Y~APE~  172 (316)
T d1fota_          97 KSQRFPNPVAKFYAAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTY-TLCGTPDYIAPEV  172 (316)
T ss_dssp             HTSSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTSCEEECCCSSCEECSSCBC-CCCSCTTTCCHHH
T ss_pred             ccccccccHHHHHHHHHHHhhhhhccCc---EEccccCchheeEcCCCCEEEecCccceEeccccc-cccCcccccCHHH
Confidence            3567899999999999999999999999   99999999999999999999999999987655433 3445665655554


Q ss_pred             -CCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCC-----CHH
Q 044320           85 -HTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARP-----SML  135 (176)
Q Consensus        85 -~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp-----~~~  135 (176)
                       .+..++.++||||+||++|+|+++..||.                       .++.+++.+||..+|.+|+     +++
T Consensus       173 l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~  252 (316)
T d1fota_         173 VSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTE  252 (316)
T ss_dssp             HTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTH
T ss_pred             HcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHhccccchhhHH
Confidence             46678999999999999999999888862                       3588999999999999996     888


Q ss_pred             HHHH
Q 044320          136 EVAR  139 (176)
Q Consensus       136 ~i~~  139 (176)
                      ++++
T Consensus       253 ~il~  256 (316)
T d1fota_         253 DVKN  256 (316)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8875

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.4e-31  Score=195.23  Aligned_cols=141  Identities=21%  Similarity=0.279  Sum_probs=110.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCC-----CCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC------CCCccc
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEA-----DPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN------INGVVG   75 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~-----~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~------~~~~~~   75 (176)
                      ..++++++++++.|++.||.|+|+..     ...|+||||||+||+++.++.+||+|||+++......      .....|
T Consensus        95 ~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~g  174 (303)
T d1vjya_          95 YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVG  174 (303)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCcceeccccceec
Confidence            46899999999999999999999730     1129999999999999999999999999987653321      122345


Q ss_pred             cceeeecCCCCC-------CCCcccchhhHhHHHHHHhccChH-------------------------------------
Q 044320           76 HVSIVVKGTHTQ-------QLTEKSDIYGLGIACLYMGLYSFE-------------------------------------  111 (176)
Q Consensus        76 ~~~~~~~~~~~~-------~~~~~~Dv~s~G~~l~~l~~~~~~-------------------------------------  111 (176)
                      +..|.+|+....       .++.++|||||||++|||.++..+                                     
T Consensus       175 t~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  254 (303)
T d1vjya_         175 TKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNI  254 (303)
T ss_dssp             CGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCC
T ss_pred             ccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhccccCCCC
Confidence            556665554322       256789999999999999766422                                     


Q ss_pred             --------HHHHHHHHHHhhcccCCCCCCCHHHHHHHHHhhhhc
Q 044320          112 --------YLKRFMSLALKYCEDETKARPSMLEVARQLENISSM  147 (176)
Q Consensus       112 --------~~~~l~~l~~~~~~~~p~~Rp~~~~i~~~l~~~~~~  147 (176)
                              .+..+.+++.+||..+|++|||+.++++.|+++...
T Consensus       255 ~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         255 PNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             CGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHh
Confidence                    123488999999999999999999999999988764

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=6.7e-31  Score=193.46  Aligned_cols=138  Identities=18%  Similarity=0.293  Sum_probs=111.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-----CCCccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-----INGVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-----~~~~~~~~~~~   80 (176)
                      +..+++.+++.++.|++.||+|||+++   ++||||||+||+++.++..+++|||.+.......     .....|+..+.
T Consensus       105 ~~~l~~~~~~~i~~qi~~al~~lH~~~---iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~  181 (277)
T d1o6ya_         105 EGPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYL  181 (277)
T ss_dssp             HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTSCEEECCCTTCEECC----------------TTC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCccccCcccccCccccceeehhhhhhhhccccccccccccccCccccc
Confidence            457999999999999999999999999   9999999999999999999999999886543221     22234555565


Q ss_pred             ecCC-CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCC
Q 044320           81 VKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARP  132 (176)
Q Consensus        81 ~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +|+. .+..++.++||||+||++|+|+++..||.                           ..+.+++.+||..||.+||
T Consensus       182 aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~  261 (277)
T d1o6ya_         182 SPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRY  261 (277)
T ss_dssp             CHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSC
T ss_pred             CHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCH
Confidence            5554 46678999999999999999999887652                           3588999999999999999


Q ss_pred             -CHHHHHHHHHhhhh
Q 044320          133 -SMLEVARQLENISS  146 (176)
Q Consensus       133 -~~~~i~~~l~~~~~  146 (176)
                       +++++.+.|.++.+
T Consensus       262 ~sa~~l~~~l~r~~n  276 (277)
T d1o6ya_         262 QTAAEMRADLVRVHN  276 (277)
T ss_dssp             SSHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHhC
Confidence             89999999988754

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=3.5e-30  Score=191.46  Aligned_cols=140  Identities=19%  Similarity=0.257  Sum_probs=114.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC---CCCeEEeecCCcccCCCCCC---------CC
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS---KFTPKVFDFEISRLAPVPNI---------NG   72 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~---~~~~~l~dfg~~~~~~~~~~---------~~   72 (176)
                      ..+.+++.++..++.|++.||+|||+++   |+||||||+||+++.   +..++++|||+++.......         ..
T Consensus        96 ~~~~~~~~~~~~~~~qi~~~l~~lH~~~---iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~  172 (299)
T d1ckia_          96 CSRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKN  172 (299)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCS
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCC
Confidence            4567999999999999999999999999   999999999999854   45799999999987543221         12


Q ss_pred             ccccceeeecCC-CCCCCCcccchhhHhHHHHHHhccChHHH-------------------------------HHHHHHH
Q 044320           73 VVGHVSIVVKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------------KRFMSLA  120 (176)
Q Consensus        73 ~~~~~~~~~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------------~~l~~l~  120 (176)
                      ..|+..+.+|+. .+..++.++|||||||++|||.++..||.                               .++.+++
T Consensus       173 ~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li  252 (299)
T d1ckia_         173 LTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYL  252 (299)
T ss_dssp             CCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHH
T ss_pred             cCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHH
Confidence            345555555554 46678999999999999999988877762                               2478899


Q ss_pred             HhhcccCCCCCCCHHHHHHHHHhhhhc
Q 044320          121 LKYCEDETKARPSMLEVARQLENISSM  147 (176)
Q Consensus       121 ~~~~~~~p~~Rp~~~~i~~~l~~~~~~  147 (176)
                      ..||..+|.+||+++++.+.|+.+...
T Consensus       253 ~~cl~~~p~~RP~~~~i~~~l~~~~~~  279 (299)
T d1ckia_         253 NFCRSLRFDDKPDYSYLRQLFRNLFHR  279 (299)
T ss_dssp             HHHHHSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHccCChhHCcCHHHHHHHHHHHHHH
Confidence            999999999999999999998877543

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.96  E-value=7.7e-31  Score=193.11  Aligned_cols=131  Identities=21%  Similarity=0.230  Sum_probs=108.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-CCCccccceeeecCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-INGVVGHVSIVVKGT   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~~   84 (176)
                      +..++++++..++.||+.||+|||+++   ++||||||+||+++.++.+||+|||+++...... .....|+..+.+|+.
T Consensus       104 ~~~l~e~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~  180 (277)
T d1phka_         104 KVTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEI  180 (277)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHcC---CcccccccceEEEcCCCCeEEccchheeEccCCCceeeeeccCCCCCHHH
Confidence            457999999999999999999999999   9999999999999999999999999998765432 223334444444432


Q ss_pred             -------CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCC
Q 044320           85 -------HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKA  130 (176)
Q Consensus        85 -------~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~  130 (176)
                             ....++.++||||+||++|+|+++..||.                           +++.+++.+||+.+|.+
T Consensus       181 ~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~  260 (277)
T d1phka_         181 IECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQK  260 (277)
T ss_dssp             HHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGG
T ss_pred             hhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHccCChhH
Confidence                   24457889999999999999988877652                           35889999999999999


Q ss_pred             CCCHHHHHH
Q 044320          131 RPSMLEVAR  139 (176)
Q Consensus       131 Rp~~~~i~~  139 (176)
                      ||+++++++
T Consensus       261 R~s~~eil~  269 (277)
T d1phka_         261 RYTAEEALA  269 (277)
T ss_dssp             SCCHHHHTT
T ss_pred             CcCHHHHHc
Confidence            999998865

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-30  Score=192.22  Aligned_cols=131  Identities=18%  Similarity=0.303  Sum_probs=109.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC----CeEEeecCCcccCCCCC-CCCccccceee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF----TPKVFDFEISRLAPVPN-INGVVGHVSIV   80 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~----~~~l~dfg~~~~~~~~~-~~~~~~~~~~~   80 (176)
                      +..+++.+++.++.|++.||+|||+++   ++||||||+||+++.++    .+|++|||++....... .....+...+.
T Consensus       107 ~~~l~~~~~~~~~~qi~~al~yLH~~~---ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~  183 (293)
T d1jksa_         107 KESLTEEEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFV  183 (293)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBCSCCCCCGGGC
T ss_pred             ccccchhHHHHHHHHHHHHHHhhhhcc---eeecccccceEEEecCCCcccceEecchhhhhhcCCCccccccCCCCccc
Confidence            357999999999999999999999999   99999999999998776    49999999998765433 22334555555


Q ss_pred             ecCC-CCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCC
Q 044320           81 VKGT-HTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARP  132 (176)
Q Consensus        81 ~~~~-~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp  132 (176)
                      +|+. ....++.++||||+||++|+|.++..||.                           ..+.+++.+||..+|.+||
T Consensus       184 APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~  263 (293)
T d1jksa_         184 APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRM  263 (293)
T ss_dssp             CHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSC
T ss_pred             CHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCc
Confidence            5544 46778999999999999999988877652                           2478999999999999999


Q ss_pred             CHHHHHH
Q 044320          133 SMLEVAR  139 (176)
Q Consensus       133 ~~~~i~~  139 (176)
                      |++++++
T Consensus       264 s~~eil~  270 (293)
T d1jksa_         264 TIQDSLQ  270 (293)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHhc
Confidence            9999876

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4e-30  Score=195.03  Aligned_cols=139  Identities=18%  Similarity=0.186  Sum_probs=111.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-CeEEeecCCcccCCCCCC-CCccccce-eee
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF-TPKVFDFEISRLAPVPNI-NGVVGHVS-IVV   81 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~-~~~l~dfg~~~~~~~~~~-~~~~~~~~-~~~   81 (176)
                      .+..+++.++..++.|++.||+|||+++   |+||||||+|||++.++ .+||+|||+++....... ....+... .++
T Consensus       115 ~~~~l~~~~~~~i~~qil~aL~yLH~~~---IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aP  191 (350)
T d1q5ka_         115 AKQTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAP  191 (350)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSCCCSCCSCTTSCCH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHhcC---CcccCCCcceEEEecCCCceeEecccchhhccCCcccccccccccccCh
Confidence            4567999999999999999999999999   99999999999999775 899999999987544332 22233443 444


Q ss_pred             cCCC-CCCCCcccchhhHhHHHHHHhccChHH------------------------------------------------
Q 044320           82 KGTH-TQQLTEKSDIYGLGIACLYMGLYSFEY------------------------------------------------  112 (176)
Q Consensus        82 ~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------------------------  112 (176)
                      +... ...++.++||||+||++|||.++..+|                                                
T Consensus       192 E~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (350)
T d1q5ka_         192 ELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVF  271 (350)
T ss_dssp             HHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTS
T ss_pred             HHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhc
Confidence            4443 457899999999999999998887665                                                


Q ss_pred             ----HHHHHHHHHhhcccCCCCCCCHHHHHHH--HHhhhh
Q 044320          113 ----LKRFMSLALKYCEDETKARPSMLEVARQ--LENISS  146 (176)
Q Consensus       113 ----~~~l~~l~~~~~~~~p~~Rp~~~~i~~~--l~~~~~  146 (176)
                          ..++.+++.+||..||++|||+.++++.  |+.+..
T Consensus       272 ~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~  311 (350)
T d1q5ka_         272 RPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRD  311 (350)
T ss_dssp             CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGC
T ss_pred             ccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccccC
Confidence                1246789999999999999999999863  554433

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.96  E-value=2e-30  Score=191.68  Aligned_cols=133  Identities=17%  Similarity=0.192  Sum_probs=106.4

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeee
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVV   81 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~   81 (176)
                      +.+..+++.++..++.|++.||+|||+++   |+||||||+||+++.++.+|++|||.+........  ....+...+.+
T Consensus        92 ~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~  168 (286)
T d1ob3a_          92 VCEGGLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRA  168 (286)
T ss_dssp             TSTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCC
T ss_pred             hhcCCcchhhhHHHHHHHHHHHHHhccCc---EEecCCCCceeeEcCCCCEEecccccceecccCccccceecccchhhh
Confidence            34677999999999999999999999999   99999999999999999999999999876543322  12223333333


Q ss_pred             cC-CC-CCCCCcccchhhHhHHHHHHhccChHHH----------------------------------------------
Q 044320           82 KG-TH-TQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------------------------  113 (176)
Q Consensus        82 ~~-~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------------------------  113 (176)
                      ++ .. ...++.++|+||+||++|||.+|..||.                                              
T Consensus       169 pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (286)
T d1ob3a_         169 PDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWES  248 (286)
T ss_dssp             HHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGG
T ss_pred             HHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhh
Confidence            33 33 4557899999999999999998877752                                              


Q ss_pred             ------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 ------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                            ..+.+++.+||..||++|||++++++
T Consensus       249 ~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         249 FLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             TCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                  24678999999999999999999874

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.5e-30  Score=193.19  Aligned_cols=136  Identities=19%  Similarity=0.206  Sum_probs=112.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTH   85 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~   85 (176)
                      ...|++.+++.++.|++.||+|||+++   |+||||||+||+++.++.++++|||+++....... ...+...+.+|+..
T Consensus       115 ~~~l~~~~~~~~~~qi~~aL~~LH~~~---IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~~-~~~~t~~y~aPE~~  190 (346)
T d1cm8a_         115 HEKLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQADSEMT-GYVVTRWYRAPEVI  190 (346)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCSSCC-SSCSCGGGCCTHHH
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHhCC---CcccccCcchhhcccccccccccccceeccCCccc-cccccccccCHHHH
Confidence            357999999999999999999999999   99999999999999999999999999987655443 33455555555543


Q ss_pred             --CCCCCcccchhhHhHHHHHHhccChHHH--------------------------------------------------
Q 044320           86 --TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------------------------------  113 (176)
Q Consensus        86 --~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------------------------------  113 (176)
                        ...++.++||||+||++|+|.++..||.                                                  
T Consensus       191 ~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (346)
T d1cm8a_         191 LNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASIL  270 (346)
T ss_dssp             HTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTC
T ss_pred             cCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhc
Confidence              3557899999999999999988876641                                                  


Q ss_pred             ----HHHHHHHHhhcccCCCCCCCHHHHHHH--HHhhh
Q 044320          114 ----KRFMSLALKYCEDETKARPSMLEVARQ--LENIS  145 (176)
Q Consensus       114 ----~~l~~l~~~~~~~~p~~Rp~~~~i~~~--l~~~~  145 (176)
                          ..+.+++.+||..||.+|||+.++++.  |+.+.
T Consensus       271 ~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~  308 (346)
T d1cm8a_         271 TNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLH  308 (346)
T ss_dssp             TTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC
T ss_pred             cCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCC
Confidence                246689999999999999999999875  55443

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8e-30  Score=190.29  Aligned_cols=137  Identities=22%  Similarity=0.319  Sum_probs=112.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC----CCcccccee-ee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI----NGVVGHVSI-VV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~-~~   81 (176)
                      ..+++..+..++.|++.||.|||+++   ++||||||+|||++.++.+||+|||+++.......    ....+...+ ++
T Consensus       128 ~~~~~~~~~~i~~~ia~gl~~LH~~~---ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aP  204 (308)
T d1p4oa_         128 APPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSP  204 (308)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhCC---eeeceEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCH
Confidence            45789999999999999999999998   99999999999999999999999999986543322    112233333 34


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhccC-hHH------------------------HHHHHHHHHhhcccCCCCCCCHHH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGLYS-FEY------------------------LKRFMSLALKYCEDETKARPSMLE  136 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~~~-~~~------------------------~~~l~~l~~~~~~~~p~~Rp~~~~  136 (176)
                      +......++.++||||||+++|||.++. .|+                        +..+.+++.+||+.+|.+|||+.+
T Consensus       205 e~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~  284 (308)
T d1p4oa_         205 ESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLE  284 (308)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHH
Confidence            4445677899999999999999997763 333                        236899999999999999999999


Q ss_pred             HHHHHHhhhh
Q 044320          137 VARQLENISS  146 (176)
Q Consensus       137 i~~~l~~~~~  146 (176)
                      +++.|++...
T Consensus       285 il~~L~~~~~  294 (308)
T d1p4oa_         285 IISSIKEEME  294 (308)
T ss_dssp             HHHHHGGGSC
T ss_pred             HHHHHHHhcC
Confidence            9999987654

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-29  Score=190.32  Aligned_cols=131  Identities=18%  Similarity=0.229  Sum_probs=109.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC-----CCCccccceeee
Q 044320            7 RSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN-----INGVVGHVSIVV   81 (176)
Q Consensus         7 ~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-----~~~~~~~~~~~~   81 (176)
                      ..+++.+++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++......     .....|...+.+
T Consensus       104 ~~l~~~~i~~i~~qil~al~yLH~~~---iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~a  180 (345)
T d1pmea_         104 QHLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRA  180 (345)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccceech
Confidence            46999999999999999999999999   9999999999999999999999999987654322     122335555655


Q ss_pred             cCCC--CCCCCcccchhhHhHHHHHHhccChHHH----------------------------------------------
Q 044320           82 KGTH--TQQLTEKSDIYGLGIACLYMGLYSFEYL----------------------------------------------  113 (176)
Q Consensus        82 ~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~----------------------------------------------  113 (176)
                      |+..  ...++.++||||+||++|+|+++..||.                                              
T Consensus       181 PE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (345)
T d1pmea_         181 PEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPW  260 (345)
T ss_dssp             GGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCH
T ss_pred             HHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCH
Confidence            5543  4567889999999999999988876641                                              


Q ss_pred             --------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 --------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 --------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                              .++.+++.+|+..||.+|||+.++++.
T Consensus       261 ~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         261 NRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             HHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                    247789999999999999999999874

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-30  Score=194.34  Aligned_cols=130  Identities=20%  Similarity=0.262  Sum_probs=109.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC--CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN--INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~~   83 (176)
                      +..+++.+++.++.||+.||+|||+++   ++||||||+|||++.++.+|++|||+++......  .....|+..+.+|+
T Consensus        97 ~~~~~e~~~~~~~~qi~~al~ylH~~~---iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE  173 (320)
T d1xjda_          97 CHKFDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPE  173 (320)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCcccceeecCCCceeccccchhhhcccccccccccCCCCCcCCHH
Confidence            456899999999999999999999999   9999999999999999999999999998654332  22334556565554


Q ss_pred             -CCCCCCCcccchhhHhHHHHHHhccChHHH-----------------------HHHHHHHHhhcccCCCCCCCHH-HHH
Q 044320           84 -THTQQLTEKSDIYGLGIACLYMGLYSFEYL-----------------------KRFMSLALKYCEDETKARPSML-EVA  138 (176)
Q Consensus        84 -~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~p~~Rp~~~-~i~  138 (176)
                       ..+..++.++||||+||++|+|++|..||.                       ..+.+++.+||..+|.+||++. +++
T Consensus       174 ~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~  253 (320)
T d1xjda_         174 ILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR  253 (320)
T ss_dssp             HHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             HHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccCCHHHHHHHHHhcccCCCCCcCHHHHHH
Confidence             457789999999999999999999887762                       3588999999999999999985 564

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.1e-29  Score=187.68  Aligned_cols=134  Identities=19%  Similarity=0.162  Sum_probs=109.5

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCC------CCCccccc
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPN------INGVVGHV   77 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~------~~~~~~~~   77 (176)
                      .....+++.+++.++.|++.||.|||+++   |+||||||+||+++.++.+|++|||+++......      .....++.
T Consensus       109 ~~~~~~~~~~~~~i~~qil~~l~~lH~~~---ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~  185 (318)
T d3blha1         109 NVLVKFTLSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL  185 (318)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCG
T ss_pred             hcccccccHHHHHHHHHHHHHHHHhccCC---EEecCcCchheeecCCCcEEeeecceeeecccccccccccccceecCH
Confidence            34567999999999999999999999999   9999999999999999999999999997554221      12234566


Q ss_pred             eeeecCCC--CCCCCcccchhhHhHHHHHHhccChHHH------------------------------------------
Q 044320           78 SIVVKGTH--TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------  113 (176)
Q Consensus        78 ~~~~~~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------  113 (176)
                      ++.+|+..  ...++.++||||+||++|+|.++..+|.                                          
T Consensus       186 ~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (318)
T d3blha1         186 WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQK  265 (318)
T ss_dssp             GGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCC
T ss_pred             HHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhccccccc
Confidence            66666543  4468999999999999999988876652                                          


Q ss_pred             -------------HHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          114 -------------KRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       114 -------------~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                   ..+.+++.+||..||++|||+.++++.
T Consensus       266 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~H  305 (318)
T d3blha1         266 RKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  305 (318)
T ss_dssp             BCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             ccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcC
Confidence                         124678999999999999999998854

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=190.61  Aligned_cols=131  Identities=16%  Similarity=0.187  Sum_probs=107.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCC--CCeEEeecCCcccCCCCCCC-Cccccce-eee
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSK--FTPKVFDFEISRLAPVPNIN-GVVGHVS-IVV   81 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~--~~~~l~dfg~~~~~~~~~~~-~~~~~~~-~~~   81 (176)
                      +..++++++..++.||+.||+|||+++   |+||||||+||+++.+  ..++++|||+++........ ...+... .++
T Consensus        96 ~~~l~e~~~~~i~~qi~~al~yLH~~~---iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~ap  172 (321)
T d1tkia_          96 AFELNEREIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAP  172 (321)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcC---CCcccccccceeecCCCceEEEEcccchhhccccCCcccccccccccccc
Confidence            447999999999999999999999999   9999999999999754  57999999999876543322 2223333 344


Q ss_pred             cCCCCCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCCCH
Q 044320           82 KGTHTQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARPSM  134 (176)
Q Consensus        82 ~~~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp~~  134 (176)
                      +......++.++||||+||++|+|+++..||.                           .++.+++.+|+..||.+|||+
T Consensus       173 e~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~  252 (321)
T d1tkia_         173 EVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTA  252 (321)
T ss_dssp             HHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             hhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHCcCH
Confidence            44457778999999999999999998887762                           247899999999999999999


Q ss_pred             HHHHH
Q 044320          135 LEVAR  139 (176)
Q Consensus       135 ~~i~~  139 (176)
                      .++++
T Consensus       253 ~eil~  257 (321)
T d1tkia_         253 SEALQ  257 (321)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99987

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.96  E-value=5.5e-29  Score=184.55  Aligned_cols=142  Identities=18%  Similarity=0.206  Sum_probs=117.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCC-----CCCeEEeecCCcccCCCCC---------C
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDS-----KFTPKVFDFEISRLAPVPN---------I   70 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~-----~~~~~l~dfg~~~~~~~~~---------~   70 (176)
                      .+..++..++..++.|++.||+|||+++   ++||||||+||+++.     .+.++++|||+++......         .
T Consensus        94 ~~~~~~~~~~~~i~~q~~~~l~~lH~~g---iiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~  170 (293)
T d1csna_          94 CGRKFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREK  170 (293)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCC
T ss_pred             hccchhhHHHHHHHHHHHHHHHHHHHCC---ceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeeccc
Confidence            4567999999999999999999999999   999999999999964     5689999999998654221         1


Q ss_pred             CCccccceeeecCCC-CCCCCcccchhhHhHHHHHHhccChHHH-------------------------------HHHHH
Q 044320           71 NGVVGHVSIVVKGTH-TQQLTEKSDIYGLGIACLYMGLYSFEYL-------------------------------KRFMS  118 (176)
Q Consensus        71 ~~~~~~~~~~~~~~~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~-------------------------------~~l~~  118 (176)
                      ....|++.+.+|+.. +..++.++||||||+++|||.++..||.                               .++.+
T Consensus       171 ~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~  250 (293)
T d1csna_         171 KNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYK  250 (293)
T ss_dssp             CCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHH
T ss_pred             CceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHH
Confidence            223466666665544 6679999999999999999988777762                               24788


Q ss_pred             HHHhhcccCCCCCCCHHHHHHHHHhhhhcCC
Q 044320          119 LALKYCEDETKARPSMLEVARQLENISSMLP  149 (176)
Q Consensus       119 l~~~~~~~~p~~Rp~~~~i~~~l~~~~~~~~  149 (176)
                      ++..|+..+|.+||+++.+.+.|+++..+..
T Consensus       251 ii~~~~~~~~~~rP~y~~l~~~l~~~~~~~~  281 (293)
T d1csna_         251 YMHYARNLAFDATPDYDYLQGLFSKVLERLN  281 (293)
T ss_dssp             HHHHHHHCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCCcccCcCHHHHHHHHHHHHHHcC
Confidence            8999999999999999999999998877653

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.6e-29  Score=190.19  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=104.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecC-C
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKG-T   84 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~-~   84 (176)
                      .+++++.++..++.|++.||+|||+++   |+||||||+||+++.++.++++|||.+.......... .+...+.+++ .
T Consensus       115 ~~~l~e~~~~~i~~qil~aL~~LH~~g---iiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~~~~~-~g~~~y~apE~~  190 (348)
T d2gfsa1         115 CQKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY-VATRWYRAPEIM  190 (348)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCC----CCTGGGSSS-CHHHHTSCHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhCC---CcccccCCccccccccccccccccchhcccCcccccc-cccccccCchhh
Confidence            356999999999999999999999999   9999999999999999999999999987655443332 3334444433 3


Q ss_pred             C-CCCCCcccchhhHhHHHHHHhccChHHH--------------------------------------------------
Q 044320           85 H-TQQLTEKSDIYGLGIACLYMGLYSFEYL--------------------------------------------------  113 (176)
Q Consensus        85 ~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~--------------------------------------------------  113 (176)
                      . ...++.++||||+||++|+|+++..||.                                                  
T Consensus       191 ~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (348)
T d2gfsa1         191 LNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVF  270 (348)
T ss_dssp             TTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHS
T ss_pred             cCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhc
Confidence            3 3456889999999999999998877651                                                  


Q ss_pred             ----HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 ----KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 ----~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                          ..+.+++.+|+..||.+|||+.++++
T Consensus       271 ~~~s~~~~dli~~mL~~dP~~R~ta~elL~  300 (348)
T d2gfsa1         271 IGANPLAVDLLEKMLVLDSDKRITAAQALA  300 (348)
T ss_dssp             TTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCCHHHHHHHHHHCcCChhhCcCHHHHhc
Confidence                24678999999999999999999987

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.5e-29  Score=183.37  Aligned_cols=132  Identities=14%  Similarity=0.137  Sum_probs=107.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC--CCccccceeeec
Q 044320            5 FRRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI--NGVVGHVSIVVK   82 (176)
Q Consensus         5 ~~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~   82 (176)
                      ..+.+++.++..++.|++.||+|||+++   |+||||||+||+++.++.+|++|||.++.......  ....+..++.++
T Consensus        94 ~~~~~~~~~~~~~~~q~~~aL~~lH~~~---IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~p  170 (292)
T d1unla_          94 CNGDLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPP  170 (292)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCCCSCCSCGGGCCH
T ss_pred             cccccchhHHHHHHHHHHHHHHHhhcCC---EeeecccCcccccccCCceeeeecchhhcccCCCccceeeccccchhhh
Confidence            4567899999999999999999999999   99999999999999999999999999987654332  122333444444


Q ss_pred             CCC--CCCCCcccchhhHhHHHHHHhccChHH------------------------------------------------
Q 044320           83 GTH--TQQLTEKSDIYGLGIACLYMGLYSFEY------------------------------------------------  112 (176)
Q Consensus        83 ~~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~------------------------------------------------  112 (176)
                      +..  ...++.++||||+||++|+|.++..||                                                
T Consensus       171 e~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
T d1unla_         171 DVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVN  250 (292)
T ss_dssp             HHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTT
T ss_pred             hHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhh
Confidence            432  334689999999999999998877653                                                


Q ss_pred             -----HHHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          113 -----LKRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       113 -----~~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                           ...+.+++.+|+..||.+|||++++++
T Consensus       251 ~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         251 VVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             TSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             ccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                 124678999999999999999999875

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.95  E-value=2.9e-28  Score=183.12  Aligned_cols=131  Identities=15%  Similarity=0.154  Sum_probs=105.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCC-CeEEeecCCcccCCCCC-CCCccccceeeecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKF-TPKVFDFEISRLAPVPN-INGVVGHVSIVVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~-~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~~   83 (176)
                      .+.|++.++..++.||+.||.|||+++   |+||||||+|||++.++ .++++|||+++...... .....++..+.+|+
T Consensus       123 ~~~l~e~~i~~i~~qil~aL~~LH~~g---IvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE  199 (328)
T d3bqca1         123 YQTLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPE  199 (328)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCCCCSCCSCGGGCCHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHhhcc---cccccccccceEEcCCCCeeeecccccceeccCCCcccccccCccccCcc
Confidence            457999999999999999999999999   99999999999998654 68999999998655432 22333444444444


Q ss_pred             C-C-CCCCCcccchhhHhHHHHHHhccChHHH------------------------------------------------
Q 044320           84 T-H-TQQLTEKSDIYGLGIACLYMGLYSFEYL------------------------------------------------  113 (176)
Q Consensus        84 ~-~-~~~~~~~~Dv~s~G~~l~~l~~~~~~~~------------------------------------------------  113 (176)
                      . . ...++.++|+||+||++|++.++..||.                                                
T Consensus       200 ~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (328)
T d3bqca1         200 LLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRW  279 (328)
T ss_dssp             HHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCG
T ss_pred             cccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccch
Confidence            3 3 3457899999999999999977765531                                                


Q ss_pred             -------------HHHHHHHHhhcccCCCCCCCHHHHHH
Q 044320          114 -------------KRFMSLALKYCEDETKARPSMLEVAR  139 (176)
Q Consensus       114 -------------~~l~~l~~~~~~~~p~~Rp~~~~i~~  139 (176)
                                   .++.+++.+|+..||++|||++++++
T Consensus       280 ~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~  318 (328)
T d3bqca1         280 ERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  318 (328)
T ss_dssp             GGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                         23678999999999999999999876

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.2e-28  Score=180.03  Aligned_cols=131  Identities=18%  Similarity=0.147  Sum_probs=103.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCC---Cccccceeeec
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNIN---GVVGHVSIVVK   82 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~~   82 (176)
                      ...+++..+..++.|++.||+|+|+++   ++||||||+||+++.++.++|+|||+++........   ...+...+.++
T Consensus       123 ~~~~~e~~~~~~~~Qi~~al~~lH~~~---ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~p  199 (322)
T d1vzoa_         123 RERFTEHEVQIYVGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAP  199 (322)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCH
T ss_pred             cccccHHHHHHHHHHHHHHHHHhhcCC---EEeccCCccceeecCCCCEEEeeccchhhhcccccccccccccccccchh
Confidence            456788999999999999999999999   999999999999999999999999999765433221   22233333333


Q ss_pred             C-CC--CCCCCcccchhhHhHHHHHHhccChHHH---------------------------HHHHHHHHhhcccCCCCCC
Q 044320           83 G-TH--TQQLTEKSDIYGLGIACLYMGLYSFEYL---------------------------KRFMSLALKYCEDETKARP  132 (176)
Q Consensus        83 ~-~~--~~~~~~~~Dv~s~G~~l~~l~~~~~~~~---------------------------~~l~~l~~~~~~~~p~~Rp  132 (176)
                      + ..  ...++.++||||+||++|+|+++..||.                           .++.+++.+||..+|++||
T Consensus       200 e~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~l~~dP~~R~  279 (322)
T d1vzoa_         200 DIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRL  279 (322)
T ss_dssp             HHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGST
T ss_pred             HHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCCCCcccCCHHHHHHHHHHcccCHHHcC
Confidence            3 22  3356789999999999999999888872                           2488999999999999999


Q ss_pred             C-----HHHHHH
Q 044320          133 S-----MLEVAR  139 (176)
Q Consensus       133 ~-----~~~i~~  139 (176)
                      +     ++++++
T Consensus       280 s~~~~t~~eil~  291 (322)
T d1vzoa_         280 GCGPRDADEIKE  291 (322)
T ss_dssp             TSSTTTHHHHHT
T ss_pred             CCCcccHHHHHc
Confidence            5     677775

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.7e-27  Score=178.33  Aligned_cols=132  Identities=20%  Similarity=0.184  Sum_probs=102.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCC-CCcccccee-eecC
Q 044320            6 RRSVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNI-NGVVGHVSI-VVKG   83 (176)
Q Consensus         6 ~~~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~-~~~~   83 (176)
                      ...+++.+++.++.|++.||.|||++|   |+||||||+||+++.++.++++|||+++....... ....++..+ +|+.
T Consensus       113 ~~~~~~~~i~~~~~qil~gl~~LH~~g---iiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~  189 (355)
T d2b1pa1         113 QMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV  189 (355)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC---------------CCTTCCHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhhhcc---cccccCCccccccccccceeeechhhhhccccccccccccccccccChhh
Confidence            356899999999999999999999999   99999999999999999999999998876544332 122233334 3444


Q ss_pred             CCCCCCCcccchhhHhHHHHHHhccChHH---------------------------------------------------
Q 044320           84 THTQQLTEKSDIYGLGIACLYMGLYSFEY---------------------------------------------------  112 (176)
Q Consensus        84 ~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~---------------------------------------------------  112 (176)
                      ..+..++.++||||+||++++|.++..+|                                                   
T Consensus       190 l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (355)
T d2b1pa1         190 ILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFP  269 (355)
T ss_dssp             HTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSC
T ss_pred             hcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccccccccccc
Confidence            45778899999999999999998887765                                                   


Q ss_pred             --------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 --------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 --------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                    ...+.+++.+|+..||++|||++++++.
T Consensus       270 ~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         270 DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  311 (355)
T ss_dssp             GGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             cccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                          1246789999999999999999999754

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=7.4e-27  Score=177.32  Aligned_cols=133  Identities=17%  Similarity=0.123  Sum_probs=106.8

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCCeEeCCCC------CeEEeecCCcccCCCCCCCCcccc
Q 044320            4 RFRRSVSLAMRLHIALGLAEGILYLHT-EADPPIIHWDIKATNTLLDSKF------TPKVFDFEISRLAPVPNINGVVGH   76 (176)
Q Consensus         4 ~~~~~l~~~~~~~i~~~i~~~l~~lh~-~~~~~~vH~dl~~~nil~~~~~------~~~l~dfg~~~~~~~~~~~~~~~~   76 (176)
                      .....+++..+..++.|++.||.|||+ .+   |+||||||+||+++.++      .++++|||.+........ ...+.
T Consensus       117 ~~~~~~~~~~i~~i~~qil~al~~lh~~~~---IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~~~-~~~gt  192 (362)
T d1q8ya_         117 YEHRGIPLIYVKQISKQLLLGLDYMHRRCG---IIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYT-NSIQT  192 (362)
T ss_dssp             TTTSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCC-SCCSC
T ss_pred             ccccCCcHHHHHHHHHHHHHHHHHHhhhcC---cccccCChhHeeeeccCcccccceeeEeecccccccccccc-ccccc
Confidence            345678999999999999999999997 88   99999999999997654      389999999877654443 23344


Q ss_pred             ceeeecC-CCCCCCCcccchhhHhHHHHHHhccChHH-------------------------------------------
Q 044320           77 VSIVVKG-THTQQLTEKSDIYGLGIACLYMGLYSFEY-------------------------------------------  112 (176)
Q Consensus        77 ~~~~~~~-~~~~~~~~~~Dv~s~G~~l~~l~~~~~~~-------------------------------------------  112 (176)
                      ..+.+|+ .....++.++|+||+||++++|.++..+|                                           
T Consensus       193 ~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~  272 (362)
T d1q8ya_         193 REYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSR  272 (362)
T ss_dssp             GGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC-
T ss_pred             ccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccc
Confidence            4444444 44778899999999999999997765443                                           


Q ss_pred             ----------------------------HHHHHHHHHhhcccCCCCCCCHHHHHHH
Q 044320          113 ----------------------------LKRFMSLALKYCEDETKARPSMLEVARQ  140 (176)
Q Consensus       113 ----------------------------~~~l~~l~~~~~~~~p~~Rp~~~~i~~~  140 (176)
                                                  ...+.+++.+|+..||.+|||++++++.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~H  328 (362)
T d1q8ya_         273 GLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNH  328 (362)
T ss_dssp             -CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTC
T ss_pred             hhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence                                        2347789999999999999999998763

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.50  E-value=5.5e-16  Score=107.12  Aligned_cols=89  Identities=13%  Similarity=0.052  Sum_probs=62.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCCeEeCCCCCeEEeecCCcccCCCCCCCCccccceeeecCCCCC
Q 044320            8 SVSLAMRLHIALGLAEGILYLHTEADPPIIHWDIKATNTLLDSKFTPKVFDFEISRLAPVPNINGVVGHVSIVVKGTHTQ   87 (176)
Q Consensus         8 ~l~~~~~~~i~~~i~~~l~~lh~~~~~~~vH~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (176)
                      .++...+..++.|++.++.|||+++   ++||||||+||+++.++ ++++|||.+.....+........-..........
T Consensus        99 ~l~~~~~~~i~~ql~~~l~~lH~~g---iiHrDiKP~NILv~~~~-~~liDFG~a~~~~~~~~~~~l~rd~~~~~~~f~r  174 (191)
T d1zara2          99 RVRVENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLVSEEG-IWIIDFPQSVEVGEEGWREILERDVRNIITYFSR  174 (191)
T ss_dssp             GCCCSCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEETTE-EEECCCTTCEETTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhCC---EEEccCChhheeeeCCC-EEEEECCCcccCCCCCcHHHHHHHHHHHHHHHcC
Confidence            3566778899999999999999999   99999999999998655 8899999987655443211000000000001135


Q ss_pred             CCCcccchhhHhH
Q 044320           88 QLTEKSDIYGLGI  100 (176)
Q Consensus        88 ~~~~~~Dv~s~G~  100 (176)
                      .|+..+|+||..-
T Consensus       175 ~y~~~~d~~s~~~  187 (191)
T d1zara2         175 TYRTEKDINSAID  187 (191)
T ss_dssp             HHCCCCCHHHHHH
T ss_pred             CCCCcccHHHHHH
Confidence            6788899999743

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.34  E-value=0.0096  Score=40.94  Aligned_cols=28  Identities=18%  Similarity=0.201  Sum_probs=24.3

Q ss_pred             CeEecCCCCCCeEeCCCCCeEEeecCCc
Q 044320           35 PIIHWDIKATNTLLDSKFTPKVFDFEIS   62 (176)
Q Consensus        35 ~~vH~dl~~~nil~~~~~~~~l~dfg~~   62 (176)
                      .++|+|+.+.|+++++++.+-++||+.+
T Consensus       184 ~l~HgD~~~~Nil~~~~~~~~lIDwe~a  211 (263)
T d1j7la_         184 VFSHGDLGDSNIFVKDGKVSGFIDLGRS  211 (263)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTC
T ss_pred             EEEEeeccCcceeecCCceEEEeechhc
Confidence            4899999999999988766779999866

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.12  E-value=0.0072  Score=42.98  Aligned_cols=29  Identities=21%  Similarity=0.259  Sum_probs=25.6

Q ss_pred             CeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           35 PIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        35 ~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      .+||+|+.++|++++.+...-++||+.+.
T Consensus       184 giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         184 GVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             ccccCCcchhhhhcccccceeEecccccc
Confidence            39999999999999988777899998763

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=93.82  E-value=0.011  Score=40.47  Aligned_cols=28  Identities=14%  Similarity=0.081  Sum_probs=24.2

Q ss_pred             CeEecCCCCCCeEeCCCCCeEEeecCCc
Q 044320           35 PIIHWDIKATNTLLDSKFTPKVFDFEIS   62 (176)
Q Consensus        35 ~~vH~dl~~~nil~~~~~~~~l~dfg~~   62 (176)
                      .++|+|+.+.||+++.+..+-++||+.+
T Consensus       176 ~liHgD~~~~Nvl~~~~~~~~iID~~~~  203 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRFSGFIDCGRL  203 (255)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTC
T ss_pred             eEEeCCCCCcceEEeCCceEEEEEchhc
Confidence            4899999999999988766779999865

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=93.22  E-value=0.022  Score=41.96  Aligned_cols=29  Identities=24%  Similarity=0.296  Sum_probs=24.6

Q ss_pred             CCeEecCCCCCCeEeCCCCCeEEeecCCcc
Q 044320           34 PPIIHWDIKATNTLLDSKFTPKVFDFEISR   63 (176)
Q Consensus        34 ~~~vH~dl~~~nil~~~~~~~~l~dfg~~~   63 (176)
                      ..++|+|+.+.||+++.++ ++++||..+.
T Consensus       223 ~~LiHGDl~~gNIlv~~~~-~~vID~E~a~  251 (392)
T d2pula1         223 ETLIHGDLHTGSIFASEHE-TKVIDPEFAF  251 (392)
T ss_dssp             CEEECSCCCGGGEEECSSC-EEECCCTTCE
T ss_pred             cceeccCCcCCceeEcCCc-eEEechhhcc
Confidence            3499999999999998765 8999998764

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=90.89  E-value=0.2  Score=35.53  Aligned_cols=28  Identities=29%  Similarity=0.311  Sum_probs=22.6

Q ss_pred             CeEecCCCCCCeEeCCCCCeEEeecCCccc
Q 044320           35 PIIHWDIKATNTLLDSKFTPKVFDFEISRL   64 (176)
Q Consensus        35 ~~vH~dl~~~nil~~~~~~~~l~dfg~~~~   64 (176)
                      .++|+|+.+.||+++++  ..++||+-+..
T Consensus       193 ~liHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         193 LRLHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             EECCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             eeecCCCCcccEEEeCC--ceEEechhccc
Confidence            48999999999999743  45899987653

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.72  E-value=0.18  Score=36.77  Aligned_cols=16  Identities=31%  Similarity=0.437  Sum_probs=13.4

Q ss_pred             CeEecCCCCCCeEeCC
Q 044320           35 PIIHWDIKATNTLLDS   50 (176)
Q Consensus        35 ~~vH~dl~~~nil~~~   50 (176)
                      ++.|+|+.+.||++..
T Consensus       219 v~CHnDL~~~NiL~~~  234 (395)
T d1nw1a_         219 TFCHNDLQEGNILLPK  234 (395)
T ss_dssp             EEECSCCCGGGEEEEC
T ss_pred             eEEecCCCcccEeecc
Confidence            4679999999999843