Citrus Sinensis ID: 044394

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
KGKTHVQDKNPGKNPNNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSARLKKRNLRLVHSTEGLTMMPQPSNEQMRVKARKRNGHGEANTSVEIEVEVEKLLKID
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccEEEccccEEEEEccccHHHHHHHHHcccccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEEccccccccccccccHcHcccccccccccEEccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccEEEEEEcccccccccEEEEEEEHHHHHccc
Coil and Loop (DISEMBL)
kgkthvqdknpgknpnnvqnpnrkenqdveydgrihshpckkygpykcpkcngafgtSQAFAAHMRSHYKYETSAERKRRLSARLKKRNLrlvhstegltmmpqpsneQMRVKARKrnghgeantsVEIEVEVEKLLKID
Flexible Loop (DISEMBL)
kgkthvqdknpgknpnnvqnpnrkeNQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLsarlkkrnlrlvhstegltmmpqpsneQMRVKARKrnghgeantsveievevekllkid
Low Complexity Region (SEG)
KGKTHVQDKNPGKNPNNVQNPNRKENQDVEYDGRIHSHpckkygpykcpkcNGAFGTSQAFAAHMRSHYKYETSAErkrrlsarlkkrnlrlVHSTEGLTMMPQPSNEQMRVKARKRNGHGEANTSveievevekllkiD
Disordered region (IsUnstruct)
**********************************IHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHY***********************************************************************
Disordered Region (DISOPRED)
******************************YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAH************************NLRLVHSTEGLTMMP************************EIEVEVEKLLKI*
Disordered Region (DISEMBL)
************KNPNNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHY**********RLSARLKKRNLRLVHSTEGLTMMPQPSNEQMRVKARKRNGHGEANTSVEIEVEVEKLLKID
Disordered Region (DISPRO)
*****V**KNPGKNPNN*QN***KENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSARLKKRNLRLVHSTEGLTMMPQPSNEQMRVKARKRNGHGEANTSVEIEVEVEKLLKID
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KGKTHVQDKNPGKNPNNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSARLKKRNLRLVHSTEGLTMMPQPSNEQMRVKARKRNGHGEANTSVEIEVEVEKLLKID
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
255574424	475	hypothetical protein RCOM_0146500 [Ricin	0.707	0.208	0.472	2e-21
356536552	325	PREDICTED: uncharacterized protein LOC10	0.542	0.233	0.610	1e-19
255647072	325	unknown [Glycine max]	0.542	0.233	0.610	1e-19
297836188	330	zinc finger family protein [Arabidopsis	0.542	0.230	0.610	2e-18
91805447	301	zinc finger family protein [Arabidopsis	0.492	0.229	0.608	6e-17
15224184	251	C2H2-like zinc finger protein [Arabidops	0.492	0.274	0.608	6e-17
116830465	302	unknown [Arabidopsis thaliana]	0.492	0.228	0.608	6e-17
297795231	297	hypothetical protein ARALYDRAFT_917478 [	0.514	0.242	0.597	1e-16
297791759	297	hypothetical protein ARALYDRAFT_917489 [	0.514	0.242	0.597	1e-16
297832510	333	hypothetical protein ARALYDRAFT_900233 [	0.464	0.195	0.646	2e-16

>gi|255574424|ref|XP_002528125.1| hypothetical protein RCOM_0146500 [Ricinus communis] gi|223532464|gb|EEF34255.1| hypothetical protein RCOM_0146500 [Ricinus communis]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 71/110 (64%), Gaps = 11/110 (10%)

Query: 28  DVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSARLKK 87
           D E DGR HS P +KYGPY CPKC   F  SQ FAAHM +HYK E+S +RK+RL+A+ K+
Sbjct: 294 DTEDDGRTHSLPHEKYGPYTCPKCRNVFSVSQTFAAHMLTHYKNESSDQRKKRLAAKYKR 353

Query: 88  RNLRLVHSTEGLTMMPQPS-----------NEQMRVKARKRNGHGEANTS 126
           +NLRLV+   G+T++P+ S           N  +R + ++  G+ EA TS
Sbjct: 354 KNLRLVYRRGGMTLLPESSKARGKSVNMVDNSNVRNEVQEGQGNAEATTS 403

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536552|ref|XP_003536801.1| PREDICTED: uncharacterized protein LOC100788426 [Glycine max]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 60/77 (77%), Gaps = 1/77 (1%)

Query: 28  DVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHM-RSHYKYETSAERKRRLSARLK 86
           D +YDGR+HS+P KK GPY CPKC   F TSQ FAAH+  SHYKYET +ERK+RL A+++
Sbjct: 184 DTKYDGRMHSYPYKKNGPYTCPKCGHVFETSQRFAAHVSSSHYKYETKSERKKRLMAKIR 243

Query: 87  KRNLRLVHSTEGLTMMP 103
           KRNLR+   + GLT++P
Sbjct: 244 KRNLRIEWVSGGLTVVP 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647072|gb|ACU24004.1| unknown [Glycine max]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 60/77 (77%), Gaps = 1/77 (1%)

Query: 28  DVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHM-RSHYKYETSAERKRRLSARLK 86
           D +YDGR+HS+P KK GPY CPKC   F TSQ FAAH+  SHYKYET +ERK+RL A+++
Sbjct: 184 DTKYDGRMHSYPYKKNGPYTCPKCGHVFETSQRFAAHVSSSHYKYETKSERKKRLMAKIR 243

Query: 87  KRNLRLVHSTEGLTMMP 103
           KRNLR+   + GLT++P
Sbjct: 244 KRNLRIEWVSGGLTVVP 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836188|ref|XP_002885976.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297331816|gb|EFH62235.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 22  NRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRL 81
           N K N D +YDGR HS P +KYGPY CPKCNG F TSQ FAAHM SHYK ETS ER+ RL
Sbjct: 222 NEKSNDD-QYDGRTHSLPYEKYGPYTCPKCNGVFDTSQKFAAHMSSHYKNETSEEREHRL 280

Query: 82  SARLKKRNLRLVHSTEG 98
            A+ K++  +L H   G
Sbjct: 281 RAKNKRKYCKLNHEIHG 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91805447|gb|ABE65452.1| zinc finger family protein [Arabidopsis thaliana]

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 51/69 (73%)

Query: 24  KENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSA 83
           +++ D +YDGRIHS P KKYGPY CPKCN  F TSQ FAAHM SHYK ET+ ER +R  A
Sbjct: 197 EKSDDAQYDGRIHSLPYKKYGPYTCPKCNSIFDTSQKFAAHMSSHYKSETNKERAQRFRA 256

Query: 84  RLKKRNLRL 92
           R K++  +L
Sbjct: 257 RNKRKYRKL 265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224184|ref|NP_179439.1| C2H2-like zinc finger protein [Arabidopsis thaliana] gi|4218009|gb|AAD12217.1| putative C2H2-type zinc finger protein [Arabidopsis thaliana] gi|225898116|dbj|BAH30390.1| hypothetical protein [Arabidopsis thaliana] gi|330251680|gb|AEC06774.1| C2H2-like zinc finger protein [Arabidopsis thaliana]

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 51/69 (73%)

Query: 24  KENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSA 83
           +++ D +YDGRIHS P KKYGPY CPKCN  F TSQ FAAHM SHYK ET+ ER +R  A
Sbjct: 147 EKSDDAQYDGRIHSLPYKKYGPYTCPKCNSIFDTSQKFAAHMSSHYKSETNKERAQRFRA 206

Query: 84  RLKKRNLRL 92
           R K++  +L
Sbjct: 207 RNKRKYRKL 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830465|gb|ABK28190.1| unknown [Arabidopsis thaliana]

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 51/69 (73%)

Query: 24  KENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSA 83
           +++ D +YDGRIHS P KKYGPY CPKCN  F TSQ FAAHM SHYK ET+ ER +R  A
Sbjct: 197 EKSDDAQYDGRIHSLPYKKYGPYTCPKCNSIFDTSQKFAAHMSSHYKSETNKERAQRFRA 256

Query: 84  RLKKRNLRL 92
           R K++  +L
Sbjct: 257 RNKRKYRKL 265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795231|ref|XP_002865500.1| hypothetical protein ARALYDRAFT_917478 [Arabidopsis lyrata subsp. lyrata] gi|297311335|gb|EFH41759.1| hypothetical protein ARALYDRAFT_917478 [Arabidopsis lyrata subsp. lyrata]

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 50/72 (69%)

Query: 24  KENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSA 83
           ++N D  YDGR HS P KK+GPY CPKCNG   TSQ FAAHM SHY  ET+ ER +RL A
Sbjct: 218 EKNDDDHYDGRTHSLPYKKFGPYTCPKCNGVLDTSQKFAAHMLSHYNSETNKERDQRLRA 277

Query: 84  RLKKRNLRLVHS 95
           R KKR  + + S
Sbjct: 278 RNKKRYRKFMES 289

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791759|ref|XP_002863764.1| hypothetical protein ARALYDRAFT_917489 [Arabidopsis lyrata subsp. lyrata] gi|297309599|gb|EFH40023.1| hypothetical protein ARALYDRAFT_917489 [Arabidopsis lyrata subsp. lyrata]

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 50/72 (69%)

Query: 24  KENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSA 83
           ++N D  YDGR HS P KK+GPY CPKCNG   TSQ FAAHM SHY  ET+ ER +RL A
Sbjct: 218 EKNDDDHYDGRTHSLPYKKFGPYTCPKCNGVLDTSQKFAAHMLSHYNSETNKERDQRLRA 277

Query: 84  RLKKRNLRLVHS 95
           R KKR  + + S
Sbjct: 278 RNKKRYRKFMES 289

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832510|ref|XP_002884137.1| hypothetical protein ARALYDRAFT_900233 [Arabidopsis lyrata subsp. lyrata] gi|297329977|gb|EFH60396.1| hypothetical protein ARALYDRAFT_900233 [Arabidopsis lyrata subsp. lyrata]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 49/65 (75%)

Query: 28  DVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSARLKK 87
           D +YDGR HS P +KYGPY CPKCNG F TSQ FAAHM SHYK ET+ ER +RL AR K+
Sbjct: 230 DDQYDGRTHSLPYEKYGPYTCPKCNGVFNTSQQFAAHMSSHYKGETNKERDQRLRARNKR 289

Query: 88  RNLRL 92
           +  +L
Sbjct: 290 KYRKL 294

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2046318	251	AT2G18490 "AT2G18490" [Arabido	0.457	0.254	0.406	6.3e-07
TAIR|locus:2053598	329	AT2G15740 "AT2G15740" [Arabido	0.385	0.164	0.509	1.5e-06
TAIR|locus:2163857	300	AT5G42640 "AT5G42640" [Arabido	0.435	0.203	0.419	2e-05
TAIR|locus:2172716	324	AT5G22990 "AT5G22990" [Arabido	0.357	0.154	0.450	0.00022

TAIR|locus:2046318 AT2G18490 "AT2G18490" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 26/64 (40%), Positives = 32/64 (50%)

Query:    13 KNPNNVQNPNRKENQDVEYDGRIHSHXXXXXXXXXXXXXNGAFGTSQAFAAHMRSHYKYE 72
             K    +     +++ D +YDGRIHS              N  F TSQ FAAHM SHYK E
Sbjct:   136 KTTEYIDCEENEKSDDAQYDGRIHSLPYKKYGPYTCPKCNSIFDTSQKFAAHMSSHYKSE 195

Query:    73 TSAE 76
             T+ E
Sbjct:   196 TNKE 199

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2053598 AT2G15740 "AT2G15740" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 28/55 (50%), Positives = 28/55 (50%)

Query:    22 NRKENQDVEYDGRIHSHXXXXXXXXXXXXXNGAFGTSQAFAAHMRSHYKYETSAE 76
             N K N D   DGR HS              NG F TSQ FAAHM SHYK ETS E
Sbjct:   221 NEKSNND-HNDGRTHSLPYEKYGPYTCPKCNGVFNTSQKFAAHMSSHYKNETSEE 274

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2163857 AT5G42640 "AT5G42640" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 26/62 (41%), Positives = 29/62 (46%)

Query:    16 NNVQNPNRKENQDV-EYDGRIHSHXXXXXXXXXXXXXNGAFGTSQAFAAHMRSHYKYETS 74
             +N  +    E  D  +YDGR HS              NG F TSQ FAAHM SHY  ET 
Sbjct:   212 SNSYDSQEDEKIDAYQYDGRTHSLPYTKYGPYTCPRCNGVFDTSQKFAAHMLSHYNNETD 271

Query:    75 AE 76
              E
Sbjct:   272 KE 273

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2172716 AT5G22990 "AT5G22990" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
 Identities = 23/51 (45%), Positives = 27/51 (52%)

Query:    27 QDVEYDGRIHSHXXXXXXXXXXXXXNGAFGTSQAFAAHMRS-HYKYETSAE 76
             +D+EYDGR HS              N  F TSQ FAAH+ S HYK E+  E
Sbjct:   227 KDIEYDGRTHSLPYEKYGPYTCPKCNSVFDTSQKFAAHISSMHYKNESIEE 277


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.306   0.122   0.353    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140        98   0.00091  102 3  11 23  0.49    30
                                                     29  0.45    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  499 (53 KB)
  Total size of DFA:  107 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.77u 0.12s 10.89t   Elapsed:  00:00:00
  Total cpu time:  10.77u 0.12s 10.89t   Elapsed:  00:00:00
  Start:  Mon May 20 15:22:19 2013   End:  Mon May 20 15:22:19 2013

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_303767.1 annotation not avaliable (330 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.25
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.02
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	98.75
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.61
KOG3576	267	consensus Ovo and related transcription factors [T	98.46
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	98.27
KOG3576	267	consensus Ovo and related transcription factors [T	98.25
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	98.22
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	98.2
PHA00616	44	hypothetical protein	98.02
PHA02768	55	hypothetical protein; Provisional	97.67
PHA02768	55	hypothetical protein; Provisional	97.55
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.37
KOG3608	467	consensus Zn finger proteins [General function pre	97.17
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.04
PHA00733	128	hypothetical protein	96.71
KOG3608	467	consensus Zn finger proteins [General function pre	96.59
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.57
PHA00733	128	hypothetical protein	96.45
smart00355	26	ZnF_C2H2 zinc finger.	96.31
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.16
PHA00732	79	hypothetical protein	95.81
PLN03086	567	PRLI-interacting factor K; Provisional	95.58
COG5189	423	SFP1 Putative transcriptional repressor regulating	95.13
PHA00732	79	hypothetical protein	95.01
PLN03086	567	PRLI-interacting factor K; Provisional	95.01
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.33
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.58
KOG3993	500	consensus Transcription factor (contains Zn finger	93.1
PHA00616	44	hypothetical protein	92.49
PRK04860	160	hypothetical protein; Provisional	91.73
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	90.44
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	90.42
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	90.42
COG5048	467	FOG: Zn-finger [General function prediction only]	90.12
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	89.54
PRK04860	160	hypothetical protein; Provisional	86.16
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	81.07

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.25  E-value=2.6e-12  Score=100.71  Aligned_cols=64  Identities=20%  Similarity=0.304  Sum_probs=56.4

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHHHHHH
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSA   83 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~~~~   83 (140)
                      +.||.+.|.+..-|+-|+|+|||    ||||.|+.|+|+|..+++|..|+++|.+.|+|+|..+...+
T Consensus       190 C~iCGKaFSRPWLLQGHiRTHTG----EKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsF  253 (279)
T KOG2462|consen  190 CGICGKAFSRPWLLQGHIRTHTG----EKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSF  253 (279)
T ss_pred             cccccccccchHHhhcccccccC----CCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHH
Confidence            46778889888899999999999    99999999999999999999999999999999876554333

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.02  E-value=1.7e-10  Score=90.62  Aligned_cols=100  Identities=16%  Similarity=0.187  Sum_probs=69.6

Q ss_pred             cccCCCCCCCCC----CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHH--
Q 044394            5 HVQDKNPGKNPN----NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERK--   78 (140)
Q Consensus         5 ~~~~~~~~~~~~----~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~--   78 (140)
                      |-|-|-+...++    ..|.+.|..--.|+.|+|+|+-      |++|..|||.|.+.=.|+-|+|+|||||||.|.-  
T Consensus       149 HkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l------~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~  222 (279)
T KOG2462|consen  149 HKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTL------PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCG  222 (279)
T ss_pred             hhcccccccccccccCCCCCceeeehHHHhhHhhccCC------CcccccccccccchHHhhcccccccCCCCccCCccc
Confidence            345555554443    5667778888899999999976      8999999999999999999999999999998754  


Q ss_pred             HHHHHHHhhhhccccccCCCceecCCCCchHHH
Q 044394           79 RRLSARLKKRNLRLVHSTEGLTMMPQPSNEQMR  111 (140)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~  111 (140)
                      +.|..+-..|.+..-++.. ..+......-.|+
T Consensus       223 kAFADRSNLRAHmQTHS~~-K~~qC~~C~KsFs  254 (279)
T KOG2462|consen  223 KAFADRSNLRAHMQTHSDV-KKHQCPRCGKSFA  254 (279)
T ss_pred             chhcchHHHHHHHHhhcCC-ccccCcchhhHHH
Confidence            4455554455543333222 2444444344443

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=98.75  E-value=2e-09  Score=93.76  Aligned_cols=59  Identities=20%  Similarity=0.253  Sum_probs=54.1

Q ss_pred             CCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHHH
Q 044394           18 VQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRR   80 (140)
Q Consensus        18 ~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~   80 (140)
                      .|-+.|.|.++|.+|.-.|+|    .+||+|..|.|+|..+.+|..|.|+|.|+|||.|.+|-
T Consensus       899 qCDK~FqKqSSLaRHKYEHsG----qRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKCl  957 (1007)
T KOG3623|consen  899 QCDKAFQKQSSLARHKYEHSG----QRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCL  957 (1007)
T ss_pred             HHHHHHHhhHHHHHhhhhhcC----CCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhh
Confidence            345789999999999999999    99999999999999999999999999999999986543

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.61  E-value=2.3e-08  Score=52.09  Aligned_cols=26  Identities=35%  Similarity=0.786  Sum_probs=24.0

Q ss_pred             hHHHHhhhhcCCCCCCccccccccCcccCC
Q 044394           28 DVEYDGRIHSHPCKKYGPYKCPKCNGAFGT   57 (140)
Q Consensus        28 ~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~   57 (140)
                      +|.+|+++|++    ++||.|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~----~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTG----EKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSS----SSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCC----CCCCCCCCCcCeeCc
Confidence            58999999999    999999999999964

...

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=98.46  E-value=5.2e-08  Score=74.17  Aligned_cols=42  Identities=26%  Similarity=0.557  Sum_probs=23.4

Q ss_pred             CCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhc
Q 044394           20 NPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHM   65 (140)
Q Consensus        20 ~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~   65 (140)
                      ...|-..++|++|+|+|+|    .+||+|..|+++|.++..|..|.
T Consensus       152 gkgfndtfdlkrh~rthtg----vrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  152 GKGFNDTFDLKRHTRTHTG----VRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             cCcccchhhhhhhhccccC----ccccchhhhhHHHHhhccHHHHH
Confidence            4445555555555555555    55555555555555555555554

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=98.27  E-value=2.6e-07  Score=81.74  Aligned_cols=59  Identities=25%  Similarity=0.376  Sum_probs=54.1

Q ss_pred             CCCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHH
Q 044394           15 PNNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAER   77 (140)
Q Consensus        15 ~~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~   77 (140)
                      .++||...|-.++.|.+|+|+|++    +|||.|..|++.|..+.+|+.|+..|.+..|...|
T Consensus       881 ~C~vCgk~FsSSsALqiH~rTHtg----~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~srr  939 (958)
T KOG1074|consen  881 VCNVCGKQFSSSAALEIHMRTHTG----PKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSRR  939 (958)
T ss_pred             hhccchhcccchHHHHHhhhcCCC----CCCccchhhhhhhhhhhhhhhhhccccccCCCccC
Confidence            557888999999999999999999    99999999999999999999999999998876644

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=98.25  E-value=2.5e-07  Score=70.54  Aligned_cols=63  Identities=14%  Similarity=0.116  Sum_probs=54.2

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHHHHHH
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSA   83 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~~~~   83 (140)
                      .||...|.-.-.|.+|+..|+.    .+-|.|..||+.|...-.|++|.++|+|.+||.|..+...+
T Consensus       121 rvCgK~F~lQRmlnrh~kch~~----vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaf  183 (267)
T KOG3576|consen  121 RVCGKKFGLQRMLNRHLKCHSD----VKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAF  183 (267)
T ss_pred             ehhhhhhhHHHHHHHHhhhccH----HHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHH
Confidence            5666777766778889999999    99999999999999999999999999999999886655444

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=98.22  E-value=4.8e-07  Score=80.09  Aligned_cols=59  Identities=24%  Similarity=0.304  Sum_probs=48.0

Q ss_pred             CCCCCCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCCh
Q 044394           12 GKNPNNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETS   74 (140)
Q Consensus        12 ~~~~~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~   74 (140)
                      .-|.+.||-.--.-.+.|+.|.|+|+|    |+||+|..||++|..+.+|+.|+-+|...-|.
T Consensus       604 dPNqCiiC~rVlSC~saLqmHyrtHtG----ERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~  662 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPSALQMHYRTHTG----ERPFKCKICGRAFTTKGNLKAHMSVHKAKPPA  662 (958)
T ss_pred             CccceeeeeecccchhhhhhhhhcccC----cCccccccccchhccccchhhcccccccCccc
Confidence            345666664444445679999999999    99999999999999999999999999765544

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=98.20  E-value=3.6e-07  Score=80.00  Aligned_cols=48  Identities=25%  Similarity=0.476  Sum_probs=44.3

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhccc
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRS   67 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~   67 (140)
                      +-||.++||.+.+|..|.|.|+|    +|||+|+.|+|+|+.+..+..|+..
T Consensus       925 C~iCkKAFKHKHHLtEHkRLHSG----EKPfQCdKClKRFSHSGSYSQHMNH  972 (1007)
T KOG3623|consen  925 CIICKKAFKHKHHLTEHKRLHSG----EKPFQCDKCLKRFSHSGSYSQHMNH  972 (1007)
T ss_pred             cchhhHhhhhhhhhhhhhhhccC----CCcchhhhhhhhcccccchHhhhcc
Confidence            45778999999999999999999    9999999999999999999999853

>PHA00616 hypothetical protein

Probab=98.02  E-value=1.1e-06  Score=51.19  Aligned_cols=31  Identities=26%  Similarity=0.529  Sum_probs=28.8

Q ss_pred             cccccccCcccCCchhHhhhcccccCCCChH
Q 044394           45 PYKCPKCNGAFGTSQAFAAHMRSHYKYETSA   75 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~   75 (140)
                      ||+|+.||+.|...+.|..|++.|++++++.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~   31 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLT   31 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccc
Confidence            7999999999999999999999999998764

>PHA02768 hypothetical protein; Provisional

Probab=97.67  E-value=1.5e-05  Score=48.66  Aligned_cols=24  Identities=29%  Similarity=0.819  Sum_probs=14.0

Q ss_pred             ccccccCcccCCchhHhhhccccc
Q 044394           46 YKCPKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        46 ~~C~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      |.|+.||+.|.+.++|..|+++|+
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~   29 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN   29 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC
Confidence            455555555555555555555555

>PHA02768 hypothetical protein; Provisional

Probab=97.55  E-value=4.8e-05  Score=46.43  Aligned_cols=42  Identities=10%  Similarity=0.046  Sum_probs=35.6

Q ss_pred             CCCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHh
Q 044394           15 PNNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFA   62 (140)
Q Consensus        15 ~~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~   62 (140)
                      .+-.|...|..+++|..|+++|+      +||.|..|++.|.+.+.|.
T Consensus         7 ~C~~CGK~Fs~~~~L~~H~r~H~------k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          7 ECPICGEIYIKRKSMITHLRKHN------TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             CcchhCCeeccHHHHHHHHHhcC------CcccCCcccceecccceeE
Confidence            34567889999999999999987      4889999999999887664

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.37  E-value=5.2e-05  Score=37.67  Aligned_cols=23  Identities=43%  Similarity=1.022  Sum_probs=20.9

Q ss_pred             ccccccCcccCCchhHhhhcccc
Q 044394           46 YKCPKCNGAFGTSQAFAAHMRSH   68 (140)
Q Consensus        46 ~~C~~Cgk~F~~~~~L~~H~r~H   68 (140)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=97.17  E-value=0.00037  Score=57.18  Aligned_cols=80  Identities=19%  Similarity=0.250  Sum_probs=63.2

Q ss_pred             cCCCCCCC-CCCCCCCc-----CCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhccccc--CCCChHH--
Q 044394            7 QDKNPGKN-PNNVQNPN-----RKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHY--KYETSAE--   76 (140)
Q Consensus         7 ~~~~~~~~-~~~~~~~~-----~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht--~ekp~~~--   76 (140)
                      |..+|+++ |..+|||+     +..++.|..|.++|++    +|-..|+.||..|.....|-.|.+..+  ...+|.|  
T Consensus       167 ~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~----eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~  242 (467)
T KOG3608|consen  167 IQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSN----EKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQ  242 (467)
T ss_pred             hhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCC----CeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHH
Confidence            45678888 88889876     4477899999999999    999999999999999999999986543  3456654  


Q ss_pred             HHHHHHHHHhhhhc
Q 044394           77 RKRRLSARLKKRNL   90 (140)
Q Consensus        77 ~~~~~~~~~~~~~~   90 (140)
                      +.++|....-.+.+
T Consensus       243 C~KrFaTeklL~~H  256 (467)
T KOG3608|consen  243 CFKRFATEKLLKSH  256 (467)
T ss_pred             HHHHHhHHHHHHHH
Confidence            66777765555544

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.04  E-value=0.00027  Score=36.38  Aligned_cols=26  Identities=35%  Similarity=0.836  Sum_probs=23.4

Q ss_pred             cccccccCcccCCchhHhhhcccccC
Q 044394           45 PYKCPKCNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      ||.|..|++.|.....|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            68999999999999999999987743

>PHA00733 hypothetical protein

Probab=96.71  E-value=0.0015  Score=46.47  Aligned_cols=26  Identities=35%  Similarity=0.749  Sum_probs=21.4

Q ss_pred             CccccccccCcccCCchhHhhhcccc
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSH   68 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~H   68 (140)
                      .+||.|+.|++.|.....|..|++.|
T Consensus        71 ~kPy~C~~Cgk~Fss~s~L~~H~r~h   96 (128)
T PHA00733         71 VSPYVCPLCLMPFSSSVSLKQHIRYT   96 (128)
T ss_pred             CCCccCCCCCCcCCCHHHHHHHHhcC
Confidence            67888888888888888888888765

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=96.59  E-value=0.00096  Score=54.82  Aligned_cols=62  Identities=19%  Similarity=0.276  Sum_probs=47.1

Q ss_pred             CCcCCCCchHHHHhhh-hcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHH--HHHHHHHh
Q 044394           20 NPNRKENQDVEYDGRI-HSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERK--RRLSARLK   86 (140)
Q Consensus        20 ~~~~~k~s~L~~H~r~-Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~--~~~~~~~~   86 (140)
                      .-.+-..++|.+|++. |+.    .+||+|+.|.+.|...+.|.+|...|+ +--|.|..  +.++.+..
T Consensus       270 dmtc~~~ssL~~H~r~rHs~----dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~  334 (467)
T KOG3608|consen  270 DMTCSSASSLTTHIRYRHSK----DKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTY  334 (467)
T ss_pred             ccCCCChHHHHHHHHhhhcc----CCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHH
Confidence            4445577899999986 777    999999999999999999999999988 34444433  44444433

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.57  E-value=0.00081  Score=32.98  Aligned_cols=23  Identities=35%  Similarity=0.970  Sum_probs=18.8

Q ss_pred             ccccccCcccCCchhHhhhcccc
Q 044394           46 YKCPKCNGAFGTSQAFAAHMRSH   68 (140)
Q Consensus        46 ~~C~~Cgk~F~~~~~L~~H~r~H   68 (140)
                      |.|+.|++.|.....|..|+..|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            68999999999999999998764

...

>PHA00733 hypothetical protein

Probab=96.45  E-value=0.00095  Score=47.43  Aligned_cols=45  Identities=13%  Similarity=0.191  Sum_probs=37.6

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRS   67 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~   67 (140)
                      ..|...|.....|..|+++|+      .+|.|..|+++|.....|..|+..
T Consensus        77 ~~Cgk~Fss~s~L~~H~r~h~------~~~~C~~CgK~F~~~~sL~~H~~~  121 (128)
T PHA00733         77 PLCLMPFSSSVSLKQHIRYTE------HSKVCPVCGKEFRNTDSTLDHVCK  121 (128)
T ss_pred             CCCCCcCCCHHHHHHHHhcCC------cCccCCCCCCccCCHHHHHHHHHH
Confidence            345677888899999998763      479999999999999999999754

>smart00355 ZnF_C2H2 zinc finger

Probab=96.31  E-value=0.0018  Score=32.02  Aligned_cols=24  Identities=42%  Similarity=1.054  Sum_probs=21.3

Q ss_pred             ccccccCcccCCchhHhhhccccc
Q 044394           46 YKCPKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        46 ~~C~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            579999999999999999988664

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.16  E-value=0.0028  Score=38.03  Aligned_cols=31  Identities=19%  Similarity=0.401  Sum_probs=22.8

Q ss_pred             CccccccccCcccCCchhHhhhcccccCCCC
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYKYET   73 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp   73 (140)
                      +.|..|+.|+..+.+..+|.+|+.++.+.||
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            7899999999999999999999988777664

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PHA00732 hypothetical protein

Probab=95.81  E-value=0.0095  Score=38.92  Aligned_cols=43  Identities=21%  Similarity=0.354  Sum_probs=31.8

Q ss_pred             CCCCCCcCCCCchHHHHhhh-hcCCCCCCccccccccCcccCCchhHhhhcccc
Q 044394           16 NNVQNPNRKENQDVEYDGRI-HSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSH   68 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~-Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~H   68 (140)
                      +..|...|....+|..|++. |++       +.|+.|++.|.   .+..|...+
T Consensus         4 C~~Cgk~F~s~s~Lk~H~r~~H~~-------~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          4 CPICGFTTVTLFALKQHARRNHTL-------TKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CCCCCCccCCHHHHHHHhhcccCC-------CccCCCCCEeC---Chhhhhccc
Confidence            35567888888999999874 543       47999999997   466776543

>PLN03086 PRLI-interacting factor K; Provisional

Probab=95.58  E-value=0.0056  Score=53.28  Aligned_cols=56  Identities=14%  Similarity=0.228  Sum_probs=39.1

Q ss_pred             CCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHHHHHH
Q 044394           19 QNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSA   83 (140)
Q Consensus        19 ~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~~~~   83 (140)
                      |+..| ....|..|+.+|.      +|+.|+ ||..| .+..|..|+..|.+.+++.|..|.+..
T Consensus       459 Cgk~f-~~s~LekH~~~~H------kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v  514 (567)
T PLN03086        459 CGQAF-QQGEMEKHMKVFH------EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMV  514 (567)
T ss_pred             CCCcc-chHHHHHHHHhcC------CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCcc
Confidence            34444 3566888877752      578888 88654 557888888888888888877665544

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=95.13  E-value=0.014  Score=47.60  Aligned_cols=60  Identities=23%  Similarity=0.435  Sum_probs=47.0

Q ss_pred             cCCCCCCCCCCCCCCcCCCCchHHHHhhh-hcCC--------------CCCCccccccccCcccCCchhHhhhcc
Q 044394            7 QDKNPGKNPNNVQNPNRKENQDVEYDGRI-HSHP--------------CKKYGPYKCPKCNGAFGTSQAFAAHMR   66 (140)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~k~s~L~~H~r~-Htg~--------------h~~ekP~~C~~Cgk~F~~~~~L~~H~r   66 (140)
                      -|-.|-+||-.=|+++++....|+.|+.- |...              .+..|||.|..|+|.+.....|+-|+.
T Consensus       345 ~d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         345 KDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             ecCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            34578899998899999999999999753 2110              233589999999999999888887754

>PHA00732 hypothetical protein

Probab=95.01  E-value=0.014  Score=38.13  Aligned_cols=26  Identities=35%  Similarity=0.503  Sum_probs=23.4

Q ss_pred             cccccccCcccCCchhHhhhcc-cccC
Q 044394           45 PYKCPKCNGAFGTSQAFAAHMR-SHYK   70 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~r-~Ht~   70 (140)
                      ||.|..|++.|.+...|..|++ .|.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~   27 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL   27 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC
Confidence            6899999999999999999998 4765

>PLN03086 PRLI-interacting factor K; Provisional

Probab=95.01  E-value=0.016  Score=50.48  Aligned_cols=65  Identities=12%  Similarity=0.089  Sum_probs=48.8

Q ss_pred             CCCCCCCCCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCC----------chhHhhhcccccCCCChHHHH
Q 044394            9 KNPGKNPNNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGT----------SQAFAAHMRSHYKYETSAERK   78 (140)
Q Consensus         9 ~~~~~~~~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~----------~~~L~~H~r~Ht~ekp~~~~~   78 (140)
                      |.|-.|+   |. .+..+..|..|+.+|..    .+|+.|..|++.|..          ...|..|...+ |.+++.|..
T Consensus       476 Hkpv~Cp---Cg-~~~~R~~L~~H~~thCp----~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~  546 (567)
T PLN03086        476 HEPLQCP---CG-VVLEKEQMVQHQASTCP----LRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDS  546 (567)
T ss_pred             CCCccCC---CC-CCcchhHHHhhhhccCC----CCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccc
Confidence            4555665   44 45566889999988888    999999999999852          34788898875 888888866


Q ss_pred             HHHH
Q 044394           79 RRLS   82 (140)
Q Consensus        79 ~~~~   82 (140)
                      +...
T Consensus       547 Cgk~  550 (567)
T PLN03086        547 CGRS  550 (567)
T ss_pred             cCCe
Confidence            5443

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.33  E-value=0.017  Score=28.87  Aligned_cols=23  Identities=30%  Similarity=0.803  Sum_probs=20.3

Q ss_pred             ccccccCcccCCchhHhhhcccc
Q 044394           46 YKCPKCNGAFGTSQAFAAHMRSH   68 (140)
Q Consensus        46 ~~C~~Cgk~F~~~~~L~~H~r~H   68 (140)
                      |.|..|++.|.....|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            67999999999999999998753

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.58  E-value=0.042  Score=28.16  Aligned_cols=22  Identities=27%  Similarity=0.757  Sum_probs=20.0

Q ss_pred             ccccccCcccCCchhHhhhccc
Q 044394           46 YKCPKCNGAFGTSQAFAAHMRS   67 (140)
Q Consensus        46 ~~C~~Cgk~F~~~~~L~~H~r~   67 (140)
                      |-|..|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6799999999999999999864

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=93.10  E-value=0.024  Score=47.64  Aligned_cols=51  Identities=18%  Similarity=0.306  Sum_probs=42.2

Q ss_pred             CCCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhccccc
Q 044394           15 PNNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        15 ~~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      -+.+|...|.+.+.|..|.-.-.-    .--|.|+.|+|.|+=..+|..|.|.|-
T Consensus       269 iCqLCK~kYeD~F~LAQHrC~RIV----~vEYrCPEC~KVFsCPANLASHRRWHK  319 (500)
T KOG3993|consen  269 ICQLCKEKYEDAFALAQHRCPRIV----HVEYRCPECDKVFSCPANLASHRRWHK  319 (500)
T ss_pred             HHHHHHHhhhhHHHHhhccCCeeE----EeeecCCcccccccCchhhhhhhcccC
Confidence            345677889999999999754443    445999999999999999999999984

>PHA00616 hypothetical protein

Probab=92.49  E-value=0.044  Score=31.91  Aligned_cols=29  Identities=3%  Similarity=-0.229  Sum_probs=25.7

Q ss_pred             CCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394           18 VQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus        18 ~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      -|+..|.+.++|..|++.|++    ++|+.|+.
T Consensus         6 ~CG~~F~~~s~l~~H~r~~hg----~~~~~~~~   34 (44)
T PHA00616          6 RCGGIFRKKKEVIEHLLSVHK----QNKLTLEY   34 (44)
T ss_pred             hhhHHHhhHHHHHHHHHHhcC----CCccceeE
Confidence            357889999999999999999    99999865

>PRK04860 hypothetical protein; Provisional

Probab=91.73  E-value=0.15  Score=37.66  Aligned_cols=30  Identities=17%  Similarity=0.386  Sum_probs=21.7

Q ss_pred             CCchHHHHhhhhcCCCCCCccccccccCcccCCc
Q 044394           25 ENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTS   58 (140)
Q Consensus        25 k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~   58 (140)
                      ....+.+|.++|++    +++|.|..|+..|...
T Consensus       127 ~~~~~rrH~ri~~g----~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        127 HQLTVRRHNRVVRG----EAVYRCRRCGETLVFK  156 (160)
T ss_pred             eeCHHHHHHHHhcC----CccEECCCCCceeEEe
Confidence            55667777777777    7788887787776543

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=90.44  E-value=0.14  Score=26.06  Aligned_cols=21  Identities=24%  Similarity=0.643  Sum_probs=16.4

Q ss_pred             ccccccCcccCCchhHhhhccc
Q 044394           46 YKCPKCNGAFGTSQAFAAHMRS   67 (140)
Q Consensus        46 ~~C~~Cgk~F~~~~~L~~H~r~   67 (140)
                      ..|+.||+.| ....|..|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4699999999 56778888653

>smart00451 ZnF_U1 U1-like zinc finger

Probab=90.42  E-value=0.15  Score=27.33  Aligned_cols=22  Identities=27%  Similarity=0.638  Sum_probs=19.7

Q ss_pred             cccccccCcccCCchhHhhhcc
Q 044394           45 PYKCPKCNGAFGTSQAFAAHMR   66 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~r   66 (140)
                      +|.|..|+..|.....+..|..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            6889999999999999988875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=90.42  E-value=0.097  Score=25.86  Aligned_cols=22  Identities=32%  Similarity=0.859  Sum_probs=15.8

Q ss_pred             ccccccCcccCCchhHhhhcccc
Q 044394           46 YKCPKCNGAFGTSQAFAAHMRSH   68 (140)
Q Consensus        46 ~~C~~Cgk~F~~~~~L~~H~r~H   68 (140)
                      |.|+.|..... ...|..|++.|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            67899987777 77888888764

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=90.12  E-value=0.14  Score=41.03  Aligned_cols=57  Identities=23%  Similarity=0.377  Sum_probs=48.7

Q ss_pred             CCCCCcCCCCchHHHHhh--hhcCCCCCC--cccccc--ccCcccCCchhHhhhcccccCCCChHHH
Q 044394           17 NVQNPNRKENQDVEYDGR--IHSHPCKKY--GPYKCP--KCNGAFGTSQAFAAHMRSHYKYETSAER   77 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r--~Htg~h~~e--kP~~C~--~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~   77 (140)
                      ..++..+...+.|..|.+  .|++    +  +|+.|+  .|++.|.+...+..|..+|++..+..+.
T Consensus       293 ~~~~~~~s~~~~l~~~~~~~~h~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (467)
T COG5048         293 KQCNISFSRSSPLTRHLRSVNHSG----ESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK  355 (467)
T ss_pred             ccccCCcccccccccccccccccc----ccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence            344677888899999999  7888    8  999999  7999999999999999999988765543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=89.54  E-value=0.5  Score=28.18  Aligned_cols=46  Identities=13%  Similarity=0.166  Sum_probs=29.5

Q ss_pred             CCCCCcCCCCchHHHHhhh-hcCCCCCCccccccccCcccCCchhHhhhccc
Q 044394           17 NVQNPNRKENQDVEYDGRI-HSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRS   67 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~-Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~   67 (140)
                      +|.+........|..|... |..   ..+.+.|+.|...+.  .+|..|+..
T Consensus         5 CP~C~~~~~~~~L~~H~~~~H~~---~~~~v~CPiC~~~~~--~~l~~Hl~~   51 (54)
T PF05605_consen    5 CPYCGKGFSESSLVEHCEDEHRS---ESKNVVCPICSSRVT--DNLIRHLNS   51 (54)
T ss_pred             CCCCCCccCHHHHHHHHHhHCcC---CCCCccCCCchhhhh--hHHHHHHHH
Confidence            4443335566788888654 555   135688999987654  377777754

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PRK04860 hypothetical protein; Provisional

Probab=86.16  E-value=0.14  Score=37.72  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=27.7

Q ss_pred             ccccccccCcccCCchhHhhhcccccCCCChHHHHHH
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRR   80 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~   80 (140)
                      -+|.|. |+.   ....+.+|.++|+++++|.|..+.
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~  150 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCG  150 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCC
Confidence            479998 987   777889999999999999876653

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=81.07  E-value=0.76  Score=29.73  Aligned_cols=24  Identities=42%  Similarity=0.985  Sum_probs=20.9

Q ss_pred             cccccccCcccCCchhHhhhcccc
Q 044394           45 PYKCPKCNGAFGTSQAFAAHMRSH   68 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~r~H   68 (140)
                      .+.|..|++.|.....|..|++.+
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCc
Confidence            689999999999999999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.42
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.22
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.22
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.16
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.11
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.1
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.07
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.06
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.04
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.03
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.03
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.02
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.02
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.01
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.01
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.0
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.0
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.99
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.99
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.98
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.98
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	98.98
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.98
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.97
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.97
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.97
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.97
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.96
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.96
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.96
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.96
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	98.96
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	98.95
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.95
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.95
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.95
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.94
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.94
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	98.93
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.92
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	98.92
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	98.92
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.92
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.91
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	98.9
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.89
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.87
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.86
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	98.86
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.85
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.84
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	98.84
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.84
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.82
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.82
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	98.82
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	98.82
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	98.81
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.81
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	98.8
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.8
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	98.79
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	98.78
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	98.78
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.78
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	98.77
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	98.77
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.76
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	98.75
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	98.74
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	98.74
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	98.73
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	98.73
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	98.73
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.73
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.72
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	98.72
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	98.72
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.68
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	98.68
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.68
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.67
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.67
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.67
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.65
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	98.65
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	98.64
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.63
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.63
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.63
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	98.61
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.61
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.6
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.58
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.58
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.57
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	98.55
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	98.55
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	98.54
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.52
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	98.52
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	98.52
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.49
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	98.48
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	98.45
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	98.45
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.45
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.45
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	98.45
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.45
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.44
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.42
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	98.42
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.41
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	98.4
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.4
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.39
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.39
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.38
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.38
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.36
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.33
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.33
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.32
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.32
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.32
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.65
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.3
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.3
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.63
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.29
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.28
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.28
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.27
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.27
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.26
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	98.25
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.25
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.25
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.24
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.23
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.22
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.11
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.09
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	98.09
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.37
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.05
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	98.03
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.0
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.98
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	97.98
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	97.93
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.91
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.9
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.89
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.89
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	97.88
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	97.88
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.87
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.86
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.85
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.84
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.84
2epa_A	72	Krueppel-like factor 10; transforming growth facto	97.83
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.83
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.82
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.82
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.82
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.82
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.81
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.81
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	97.81
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.78
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.78
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	97.78
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.78
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	97.77
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.76
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	97.75
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	97.74
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.74
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.74
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.74
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	97.74
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.73
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.72
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.72
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.72
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.69
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.69
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.69
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.69
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.67
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.67
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.67
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	97.67
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.67
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.66
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.66
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.65
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	97.65
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.64
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.64
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.63
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.61
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.6
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.54
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	97.52
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.52
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.51
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.49
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.47
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	97.45
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.43
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.42
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.39
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.36
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.35
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.35
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.34
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.32
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.31
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.31
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.3
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.29
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	97.28
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.27
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.27
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.26
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	97.25
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	97.25
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.21
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.21
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.2
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	97.2
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.2
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.19
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.17
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.17
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	97.15
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.15
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.15
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	97.14
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	97.11
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	97.09
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.08
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	97.08
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.07
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	97.06
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.03
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	96.98
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	96.94
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	96.94
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	96.9
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	96.9
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.87
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	96.83
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.81
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	96.65
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	96.55
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	96.46
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	96.44
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	96.0
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	95.45
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	95.34
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.23
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	95.04
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	94.95
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	94.69
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	94.68
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.67
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	94.26
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.13
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	93.91
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	93.91
1ard_A	29	Yeast transcription factor ADR1; transcription reg	93.85
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	93.64
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	93.63
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.3
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	93.01
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.95
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	92.72
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.69
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	92.55
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.53
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	92.41
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.01
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	92.0
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.75
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	91.61
1paa_A	30	Yeast transcription factor ADR1; transcription reg	91.59
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	91.11
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	90.66
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	89.8
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	88.31
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	81.91

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.42  E-value=7.7e-14  Score=85.89  Aligned_cols=52  Identities=21%  Similarity=0.477  Sum_probs=49.0

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      .+|...|...+.|..|+++|++    ++||.|..|+++|.+...|..|+++|+|++
T Consensus         8 ~~C~k~F~~~~~L~~H~~~Ht~----ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            8 NFCGKTYRDASGLSRHRRAHLG----YRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             TTTCCEESSHHHHHHHHHHHHT----CCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCCEeCCHHHHHHHHHHhCC----CcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            5678999999999999999999    999999999999999999999999999975

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.22  E-value=6e-12  Score=78.70  Aligned_cols=54  Identities=17%  Similarity=0.365  Sum_probs=51.0

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCCh
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETS   74 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~   74 (140)
                      .+|...|.....|..|+++|++    ++||.|..|++.|.....|..|+++|++++||
T Consensus        21 ~~C~k~f~~~~~l~~H~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           21 DRCQASFRYKGNLASHKTVHTG----EKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             TTSSCCBSCHHHHHHHHHHHCC----CCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCceeCCHHHHHHHHHHcCC----CCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            4678899999999999999999    99999999999999999999999999999875

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.22  E-value=1e-11  Score=78.21  Aligned_cols=56  Identities=25%  Similarity=0.388  Sum_probs=52.2

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChH
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSA   75 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~   75 (140)
                      +.+|...|.....|..|+++|++    ++||.|..|++.|.....|..|+++|++++||.
T Consensus        21 C~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~   76 (77)
T 2cot_A           21 CDECGKSFSHSSDLSKHRRTHTG----EKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS   76 (77)
T ss_dssp             CSSSCCBCSCHHHHHHHHTTTCC----SCSEECSSSCCEESSHHHHHHHGGGSCCCCCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCC----CcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            35678999999999999999999    999999999999999999999999999999875

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.16  E-value=5.7e-12  Score=74.60  Aligned_cols=51  Identities=16%  Similarity=0.223  Sum_probs=47.9

Q ss_pred             CCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCCh
Q 044394           20 NPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETS   74 (140)
Q Consensus        20 ~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~   74 (140)
                      +..|.....|..|+++|++    ++||.|..|++.|.+...|..|+++|++++||
T Consensus         3 ~k~~~~~~~l~~h~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQS----EQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTS----SCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccccCCCcchhhHHHhcCC----CCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            5678888899999999999    99999999999999999999999999999886

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.11  E-value=3.2e-11  Score=81.47  Aligned_cols=70  Identities=16%  Similarity=0.137  Sum_probs=58.3

Q ss_pred             cccCCCCCCCC--CCCCCCcCCCCchHHHHhh-hh---cCCCCCCccccccccCcccCCchhHhhh-cccccCCCChHHH
Q 044394            5 HVQDKNPGKNP--NNVQNPNRKENQDVEYDGR-IH---SHPCKKYGPYKCPKCNGAFGTSQAFAAH-MRSHYKYETSAER   77 (140)
Q Consensus         5 ~~~~~~~~~~~--~~~~~~~~~k~s~L~~H~r-~H---tg~h~~ekP~~C~~Cgk~F~~~~~L~~H-~r~Ht~ekp~~~~   77 (140)
                      |+|.-..+..|  +..|...|..++.|..|++ +|   ++    ++||.|..|+++|.....|..| +++|++++||.|.
T Consensus         8 ~~~~~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~----ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~   83 (102)
T 2ghf_A            8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVL----NSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLT   83 (102)
T ss_dssp             TTTTCCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCC----SCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEE
T ss_pred             cccccCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCC----CCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCC
Confidence            45555555554  3567899999999999997 59   56    8999999999999999999999 8999999998754


Q ss_pred             H
Q 044394           78 K   78 (140)
Q Consensus        78 ~   78 (140)
                      .
T Consensus        84 ~   84 (102)
T 2ghf_A           84 M   84 (102)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=4.8e-11  Score=77.46  Aligned_cols=63  Identities=13%  Similarity=0.196  Sum_probs=56.1

Q ss_pred             CCCCCCCCCCCCcCCCCchHHHHhhh-hcCCCCCCcc--------ccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           10 NPGKNPNNVQNPNRKENQDVEYDGRI-HSHPCKKYGP--------YKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        10 ~~~~~~~~~~~~~~~k~s~L~~H~r~-Htg~h~~ekP--------~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      ...+.+..+|...|.....|..|+++ |++    ++|        |.|..|++.|.....|..|+++|++++||.|
T Consensus        22 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~----~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   93 (95)
T 2ej4_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVG----GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS   93 (95)
T ss_dssp             SCSSSSCCCCCCCCSSHHHHHHHHHHTTTC----CTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSS
T ss_pred             CcCCCcccccccccCCHHHHHHHHHHhccC----CCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            34455677889999999999999998 988    887        9999999999999999999999999999864

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.07  E-value=9.4e-11  Score=69.27  Aligned_cols=53  Identities=25%  Similarity=0.376  Sum_probs=49.3

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      +.+|+..|...+.|..|+++|++    ++||.|+.|++.|.....|..|+++|.+++
T Consensus         4 C~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            4 CEECGIRXKKPSMLKKHIRTHTD----VRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHTSS----CCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCCCcCcCCCHHHHHHHHHhcCC----CCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            35678999999999999999999    999999999999999999999999998875

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.4e-11  Score=67.66  Aligned_cols=40  Identities=25%  Similarity=0.513  Sum_probs=36.9

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSA   75 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~   75 (140)
                      |+++|++    ++||.|+.|++.|.+...|..|+++|++++||.
T Consensus         2 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2ytb_A            2 SSGSSGG----EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS   41 (42)
T ss_dssp             CCCCCCS----CCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCC
T ss_pred             CccccCC----CCCeeCCCccchhCCHHHHHHHHHHhCCCCCCC
Confidence            6677777    999999999999999999999999999999875

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.04  E-value=9.6e-11  Score=76.64  Aligned_cols=53  Identities=17%  Similarity=0.238  Sum_probs=48.4

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhc-ccccCCC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHM-RSHYKYE   72 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~-r~Ht~ek   72 (140)
                      +.+|+..|.....|..|+++|++    ++||.|..|+++|.+...|..|+ ++|+++.
T Consensus        31 C~~Cgk~F~~~~~L~~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           31 CPVCGESFASKGAQERHLRLLHA----AQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CTTSCCEESSHHHHHHHHHTTSC----SSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCcCcHHHHhhhhhhccC----CCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            35678999999999999999999    99999999999999999999996 6798864

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.04  E-value=9e-11  Score=72.46  Aligned_cols=54  Identities=17%  Similarity=0.269  Sum_probs=50.2

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCCh
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETS   74 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~   74 (140)
                      .+|...|.....|..|+++|++    ++||.|..|++.|.....|..|++.|.+++|.
T Consensus        13 ~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A           13 SECSYSCSSKAALRIHERIHCT----DRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SSSSCEESSHHHHHHHHGGGCC----SCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCcccCCHHHHHHHHHHcCC----CCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            4678899999999999999999    99999999999999999999999999998764

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.03  E-value=3.3e-11  Score=67.17  Aligned_cols=41  Identities=24%  Similarity=0.483  Sum_probs=37.0

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         1 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            1 GSSGSSG----ENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CCSSSSS----CCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCC----CCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            5667777    9999999999999999999999999999998753

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.5e-11  Score=66.98  Aligned_cols=41  Identities=20%  Similarity=0.415  Sum_probs=37.0

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         1 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGSSG----EKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CCSSSCS----CCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CCcCcCC----CCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            5667777    9999999999999999999999999999998754

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=5.2e-11  Score=66.47  Aligned_cols=40  Identities=25%  Similarity=0.434  Sum_probs=36.6

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSA   75 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~   75 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.
T Consensus         2 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2eos_A            2 SSGSSGG----EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS   41 (42)
T ss_dssp             CCSCCSS----SCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTT
T ss_pred             CCcccCC----CCCEECCCCCCccCCHHHHHHHHHhcCCCCCCC
Confidence            5667777    999999999999999999999999999999875

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=4.2e-11  Score=68.10  Aligned_cols=42  Identities=29%  Similarity=0.506  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq2_A            2 SSGSSGTG----GKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSSS----SCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCC
T ss_pred             CcccccCC----CCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            36777877    9999999999999999999999999999998864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=4.8e-11  Score=67.98  Aligned_cols=42  Identities=24%  Similarity=0.449  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yth_A            2 SSGSSGSG----EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCSCCCC----SSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSC
T ss_pred             CcccCCCC----CcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            46777777    9999999999999999999999999999998864

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.02  E-value=4.3e-11  Score=84.05  Aligned_cols=59  Identities=17%  Similarity=0.080  Sum_probs=54.3

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHH
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKR   79 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~   79 (140)
                      .+|+..|...+.|..|+++|++    ++||.|+.|++.|.+...|..|+++|++++|+.|..+
T Consensus        26 ~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   84 (133)
T 2lt7_A           26 IVCKRSYVCLTSLRRHFNIHSW----EKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC   84 (133)
T ss_dssp             TTTCCEESCHHHHHHHHHHHHC----CSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSS
T ss_pred             CCCCCCcCCHHHHHHHHHHcCC----CCCeeCCccCeecccccchhhhccccCCCccccCCCC
Confidence            5688999999999999999999    9999999999999999999999999999999976443

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4.7e-11  Score=67.82  Aligned_cols=42  Identities=24%  Similarity=0.433  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep1_A            2 SSGSSGTG----EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP   43 (46)
T ss_dssp             CCCCCCSS----CCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSS
T ss_pred             ccccCCCC----CCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            46777777    9999999999999999999999999999998864

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.01  E-value=5.4e-11  Score=67.64  Aligned_cols=42  Identities=19%  Similarity=0.351  Sum_probs=38.2

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|+.|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em0_A            2 SSGSSGMG----EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP   43 (46)
T ss_dssp             CCCCCSCC----CCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCS
T ss_pred             CCcCccCC----CcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCC
Confidence            46777877    9999999999999999999999999999999864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4.7e-11  Score=67.91  Aligned_cols=42  Identities=26%  Similarity=0.435  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yti_A            2 SSGSSGTG----EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSC----CCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSST
T ss_pred             CCCcCCCC----CcCeECCCCCcccCChhHHHHHhHhcCCCCCCCC
Confidence            36677777    9999999999999999999999999999999865

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4.2e-11  Score=68.13  Aligned_cols=42  Identities=24%  Similarity=0.417  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enf_A            2 SSGSSGTG----EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCC----CCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCC
T ss_pred             CCCcCCCC----CcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCC
Confidence            36677777    9999999999999999999999999999998864

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4e-11  Score=67.38  Aligned_cols=42  Identities=24%  Similarity=0.461  Sum_probs=37.9

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            2 SSGSSGTG----MKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             CSCCCSSS----SSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCCcCCCC----CcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            36777777    9999999999999999999999999999998754

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4.1e-11  Score=68.16  Aligned_cols=42  Identities=24%  Similarity=0.461  Sum_probs=38.4

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ep3_A            2 SSGSSGTG----EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP   43 (46)
T ss_dssp             CCCSSSSC----CCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCT
T ss_pred             CCCCCCCC----CCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            46777888    9999999999999999999999999999999865

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=5.1e-11  Score=67.86  Aligned_cols=42  Identities=26%  Similarity=0.373  Sum_probs=38.2

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em6_A            2 SSGSSGMG----EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCSCCCC----CCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCT
T ss_pred             CCccccCC----CCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            36777777    9999999999999999999999999999999865

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=7.3e-11  Score=67.27  Aligned_cols=41  Identities=29%  Similarity=0.468  Sum_probs=37.6

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         3 h~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eon_A            3 SGSSGTG----EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP   43 (46)
T ss_dssp             CSSSCSS----CCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTT
T ss_pred             CCCCCCC----CcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCC
Confidence            5677777    9999999999999999999999999999999865

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=5.4e-11  Score=67.74  Aligned_cols=41  Identities=27%  Similarity=0.443  Sum_probs=37.5

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         3 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eoh_A            3 SGSSGSG----KKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP   43 (46)
T ss_dssp             CCCSCCC----SCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCST
T ss_pred             CCCCcCC----CCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            5677777    9999999999999999999999999999998865

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4e-11  Score=68.33  Aligned_cols=42  Identities=24%  Similarity=0.420  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytp_A            2 SSGSSGTG----ERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSCC----CCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSS
T ss_pred             CcccCcCC----CCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            36777777    9999999999999999999999999999998864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4.5e-11  Score=67.91  Aligned_cols=42  Identities=24%  Similarity=0.392  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C   43 (46)
T 2yts_A            2 SSGSSGTG----EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCSCCCCS----CCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCC
T ss_pred             CCCCCCCC----CcCEECCCCChhhCChHHHHHHHHhcCCCCCcCC
Confidence            36677777    9999999999999999999999999999998864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=3.8e-11  Score=67.67  Aligned_cols=42  Identities=24%  Similarity=0.513  Sum_probs=37.8

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            2 SSGSSGAG----ENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CCSCCCSC----CCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CCccccCC----CCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            46777777    9999999999999999999999999999998753

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=5.5e-11  Score=67.63  Aligned_cols=41  Identities=24%  Similarity=0.423  Sum_probs=37.5

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         3 H~~~H~~----~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emi_A            3 SGSSGTG----ERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP   43 (46)
T ss_dssp             CCCSCSS----CCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSC
T ss_pred             CCcccCC----CCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCC
Confidence            6677777    9999999999999999999999999999998764

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=5.9e-11  Score=67.48  Aligned_cols=42  Identities=26%  Similarity=0.440  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytn_A            2 SSGSSGTG----KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSC----CSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSC
T ss_pred             CCCcCCCC----CcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCC
Confidence            36677777    9999999999999999999999999999998864

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.00  E-value=5.2e-11  Score=67.62  Aligned_cols=42  Identities=26%  Similarity=0.500  Sum_probs=38.2

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2el4_A            2 SSGSSGTG----VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP   43 (46)
T ss_dssp             CCCCCSCC----CCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCC
T ss_pred             ccccCCCC----CCceECCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            46777777    9999999999999999999999999999999864

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=6.1e-11  Score=66.82  Aligned_cols=42  Identities=19%  Similarity=0.428  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            2 SSGSSGHT----RKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCCSCCCC----CSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             CcccccCC----CCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            46777777    9999999999999999999999999999998864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=4.4e-11  Score=68.11  Aligned_cols=41  Identities=32%  Similarity=0.549  Sum_probs=37.7

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         3 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em4_A            3 SGSSGTG----QRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP   43 (46)
T ss_dssp             SCCCCCC----SSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCC
T ss_pred             CccccCC----CcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            6777777    9999999999999999999999999999998864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=8.6e-11  Score=66.89  Aligned_cols=41  Identities=27%  Similarity=0.501  Sum_probs=37.1

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         3 h~~~h~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enh_A            3 SGSSGTG----EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP   43 (46)
T ss_dssp             CCCCCCC----SSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCC
T ss_pred             CCCCcCC----CCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            5667777    9999999999999999999999999999998764

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=4.9e-11  Score=67.11  Aligned_cols=41  Identities=20%  Similarity=0.498  Sum_probs=37.5

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         3 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            3 SGSSGTG----ENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCCSSSS----CCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CccccCC----CcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            6777877    9999999999999999999999999999998754

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.7e-11  Score=66.99  Aligned_cols=40  Identities=25%  Similarity=0.396  Sum_probs=36.5

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSA   75 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~   75 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.
T Consensus         2 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2en2_A            2 SSGSSGG----EKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS   41 (42)
T ss_dssp             CCCCCCS----SCSEECTTTCCEESSHHHHHHHTHHHHSCCSSC
T ss_pred             CCcccCC----CCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCC
Confidence            5667777    999999999999999999999999999999875

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=5.2e-11  Score=67.71  Aligned_cols=42  Identities=26%  Similarity=0.447  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq1_A            2 SSGSSGTG----EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCC----SCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSC
T ss_pred             CcccccCC----CCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            36777777    9999999999999999999999999999998864

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=4.3e-11  Score=68.00  Aligned_cols=42  Identities=29%  Similarity=0.498  Sum_probs=38.2

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eow_A            2 SSGSSGTG----EKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP   43 (46)
T ss_dssp             CCCCCSCC----CCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCT
T ss_pred             CccCCCCC----CCCeeccccCChhcCHHHHHHHHHHcCCCCCCCC
Confidence            36777777    9999999999999999999999999999999865

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=7.2e-11  Score=67.21  Aligned_cols=41  Identities=20%  Similarity=0.396  Sum_probs=37.7

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         3 H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emf_A            3 SGSSGTG----GKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP   43 (46)
T ss_dssp             CCSSSSS----SCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCC
T ss_pred             cccccCC----CCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            6777777    9999999999999999999999999999998864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=7e-11  Score=67.18  Aligned_cols=41  Identities=20%  Similarity=0.414  Sum_probs=37.5

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         3 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2emg_A            3 SGSSGTG----ENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP   43 (46)
T ss_dssp             CCCCCCS----CCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCS
T ss_pred             CCCCCCC----CCCEECCccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            6677777    9999999999999999999999999999998864

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.99  E-value=5.6e-11  Score=67.60  Aligned_cols=42  Identities=21%  Similarity=0.411  Sum_probs=38.3

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ema_A            2 SSGSSGTG----EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP   43 (46)
T ss_dssp             CSCSSCTT----SCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSS
T ss_pred             CCccCCCC----CcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCC
Confidence            46777887    9999999999999999999999999999999864

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.99  E-value=5e-11  Score=67.90  Aligned_cols=42  Identities=26%  Similarity=0.490  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|+.|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emk_A            2 SSGSSGTG----EKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSS----SCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSC
T ss_pred             CCCCccCC----CCceECCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            46777777    9999999999999999999999999999998864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=4.4e-11  Score=68.12  Aligned_cols=42  Identities=29%  Similarity=0.481  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yto_A            2 SSGSSGTG----EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP   43 (46)
T ss_dssp             CCCCCCCS----CCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTT
T ss_pred             CcccccCC----CCCEECcccCCccCCHhHHHHHHHHcCCCCCCCC
Confidence            36777777    9999999999999999999999999999998864

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=5.3e-11  Score=67.67  Aligned_cols=42  Identities=26%  Similarity=0.464  Sum_probs=38.4

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytj_A            2 SSGSSGTG----EKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP   43 (46)
T ss_dssp             CSSCTTSS----CCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSC
T ss_pred             CcccCCCC----CcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            46778888    9999999999999999999999999999998864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=4.9e-11  Score=67.74  Aligned_cols=42  Identities=26%  Similarity=0.515  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytf_A            2 SSGSSGTG----EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSCC----CCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCC
T ss_pred             CCCCCCCC----CCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            36777777    9999999999999999999999999999998864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.99  E-value=5.3e-11  Score=67.79  Aligned_cols=42  Identities=26%  Similarity=0.498  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emj_A            2 SSGSSGTG----EKPFECAECGKSFSISSQLATHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCC----CCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSS
T ss_pred             CCCCCCCC----CCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            36777777    9999999999999999999999999999998864

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=5.9e-11  Score=67.49  Aligned_cols=42  Identities=29%  Similarity=0.511  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|+.|++.|.....|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eml_A            2 SSGSSGTG----EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP   43 (46)
T ss_dssp             CCCCCCSS----CCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCS
T ss_pred             CccCCcCC----CCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCC
Confidence            46777777    9999999999999999999999999999998864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=5.2e-11  Score=67.62  Aligned_cols=42  Identities=26%  Similarity=0.491  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yrj_A            2 SSGSSGTG----EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCC----CCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCS
T ss_pred             CCccCCCC----CCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            36777777    9999999999999999999999999999998864

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=6.4e-11  Score=67.24  Aligned_cols=42  Identities=21%  Similarity=0.376  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eop_A            2 SSGSSGTG----EKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP   43 (46)
T ss_dssp             CCCCSCCC----CCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCC
T ss_pred             CCccccCC----CCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            46777777    9999999999999999999999999999998864

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1e-10  Score=66.59  Aligned_cols=41  Identities=29%  Similarity=0.507  Sum_probs=37.5

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         3 h~~~h~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2elz_A            3 SGSSGSV----EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP   43 (46)
T ss_dssp             CCSCCCC----CSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCS
T ss_pred             CCCCCCC----CCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCC
Confidence            5677777    9999999999999999999999999999998864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=4.8e-11  Score=67.06  Aligned_cols=42  Identities=26%  Similarity=0.506  Sum_probs=37.8

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|+.|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            2 SSGSSGTG----EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CCSSCCSC----CCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CCccCCCC----CCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            36677777    9999999999999999999999999999998754

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=98.98  E-value=8.8e-11  Score=77.66  Aligned_cols=61  Identities=18%  Similarity=0.264  Sum_probs=54.4

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHHHH
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRL   81 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~~   81 (140)
                      .+|...|.....|..|+++|.+    ++||.|..|++.|.....|..|+++|.++++|.|..+..
T Consensus        21 ~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   81 (106)
T 2ee8_A           21 KFCGRHFTKSYNLLIHERTHTD----ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGK   81 (106)
T ss_dssp             SSSCCBCSSHHHHHHHHHHHCC----SCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCC
T ss_pred             CCCCCccCCHHHHHHHHHHcCC----CCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCC
Confidence            4568889999999999999999    999999999999999999999999999999997654443

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.98  E-value=5.8e-11  Score=66.07  Aligned_cols=40  Identities=25%  Similarity=0.425  Sum_probs=36.4

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSA   75 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~   75 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.
T Consensus         2 H~~~H~~----~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~   41 (42)
T 2epc_A            2 SSGSSGG----ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS   41 (42)
T ss_dssp             CCSCCCS----SCCEECSSSCCEESSHHHHHHHHHHTTCCCCCC
T ss_pred             CCccCCC----CCCeECCCCCcccCCHHHHHHHhhhcCCCCCCC
Confidence            4566777    999999999999999999999999999999875

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.9e-11  Score=68.36  Aligned_cols=42  Identities=29%  Similarity=0.453  Sum_probs=38.2

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eoz_A            2 SSGSSGTG----EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP   43 (46)
T ss_dssp             CSCCCCSS----CCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSC
T ss_pred             CccccCCC----CCCeECcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            46777877    9999999999999999999999999999998864

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.1e-10  Score=66.42  Aligned_cols=41  Identities=24%  Similarity=0.418  Sum_probs=37.7

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|+.|++.|.+...|..|+++|++++||.+
T Consensus         3 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em7_A            3 SGSSGTG----EKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP   43 (46)
T ss_dssp             CCCSSSC----CCSEECSSSCCEESCHHHHHHHGGGGTTCCCSST
T ss_pred             CCCCCCC----CcCccCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            5677777    9999999999999999999999999999999865

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=4.6e-11  Score=67.94  Aligned_cols=42  Identities=26%  Similarity=0.475  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em3_A            2 SSGSSGTG----EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSS----CCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCS
T ss_pred             CCCCCCCC----CcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            46777777    9999999999999999999999999999998864

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=6.3e-11  Score=67.27  Aligned_cols=42  Identities=29%  Similarity=0.501  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eoe_A            2 SSGSSGTG----EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP   43 (46)
T ss_dssp             CCSSCCCC----CCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSS
T ss_pred             CCCCCCCC----CCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            36777777    9999999999999999999999999999998864

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.97  E-value=1.1e-10  Score=66.16  Aligned_cols=42  Identities=24%  Similarity=0.441  Sum_probs=38.2

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em9_A            2 SSGSSGTG----EKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP   43 (46)
T ss_dssp             CSCCSCCC----CCSEECSSSCCEESSHHHHHHHGGGGTSCCCCST
T ss_pred             CCCCCCCC----CcCeECCccccccCChHHHHHHHHHhCCCCCCCC
Confidence            36777877    9999999999999999999999999999999865

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=8.6e-11  Score=66.79  Aligned_cols=42  Identities=21%  Similarity=0.437  Sum_probs=37.9

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|+.|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytg_A            2 SSGSSGTG----EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSS----CCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCS
T ss_pred             CCCCCCCC----CCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            36677777    9999999999999999999999999999998864

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=6.3e-11  Score=67.26  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eq4_A            2 SSGSSGTG----EKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP   43 (46)
T ss_dssp             CCCCCSSC----CCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCC
T ss_pred             CCcccCCC----CCCeECCCCCCccCchHHHHHHHHhcCCCCCCCC
Confidence            46777877    9999999999999999999999999999998864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.5e-10  Score=65.39  Aligned_cols=41  Identities=27%  Similarity=0.426  Sum_probs=37.3

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSA   75 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~   75 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2epv_A            2 SSGSSGSG----EKPYECNECGKAFIWKSLLIVHERTHAGVSGPS   42 (44)
T ss_dssp             CCCCCCCC----CCSEECSSSCCEESSHHHHHHHHGGGSSCSCCC
T ss_pred             CCCcccCC----CcCeECCCCCcccCchHHHHHHHhHhcCCCCCC
Confidence            36777777    999999999999999999999999999999875

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=9.8e-11  Score=66.55  Aligned_cols=41  Identities=24%  Similarity=0.441  Sum_probs=37.5

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         3 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2epz_A            3 SGSSGTG----EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCSSCCC----CCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSS
T ss_pred             CCCCcCC----CCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCC
Confidence            6677777    9999999999999999999999999999998864

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.97  E-value=8.7e-11  Score=66.87  Aligned_cols=41  Identities=24%  Similarity=0.477  Sum_probs=37.5

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         3 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ely_A            3 SGSSGTG----EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCC----CCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSC
T ss_pred             CCCCCCC----CCCcccCccCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            6677777    9999999999999999999999999999998864

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=6.7e-11  Score=67.27  Aligned_cols=42  Identities=21%  Similarity=0.416  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|+.|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep2_A            2 SSGSSGTG----EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP   43 (46)
T ss_dssp             CSSSCSSC----CCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCS
T ss_pred             CCCCCCCC----CcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            46777777    9999999999999999999999999999998864

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=6.9e-11  Score=67.20  Aligned_cols=42  Identities=26%  Similarity=0.429  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq0_A            2 SSGSSGTG----EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCTTC----CCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCC
T ss_pred             CCCcCCCC----CCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            36677777    9999999999999999999999999999998864

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5.9e-11  Score=67.48  Aligned_cols=42  Identities=29%  Similarity=0.476  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2yu8_A            2 SSGSSGTG----EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP   43 (46)
T ss_dssp             CCCCCCCC----CSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCS
T ss_pred             CcCcCCCC----CCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCC
Confidence            36677777    9999999999999999999999999999998864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=8.8e-11  Score=66.84  Aligned_cols=42  Identities=24%  Similarity=0.411  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~h~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en9_A            2 SSGSSGAG----KKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCSSCCS----SCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSC
T ss_pred             CCCCCCCC----CCCEECCccCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            36677777    9999999999999999999999999999998864

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=9e-11  Score=66.71  Aligned_cols=42  Identities=26%  Similarity=0.463  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|+.|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ene_A            2 SSGSSGTG----EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCSSCCC----SSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSC
T ss_pred             CcccCCCC----CCCeECCCCCchhCChHHHHHHHhhcCCCCCCCC
Confidence            36777777    9999999999999999999999999999998864

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=8.2e-11  Score=66.78  Aligned_cols=42  Identities=31%  Similarity=0.524  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ytr_A            2 SSGSSGTG----EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP   43 (46)
T ss_dssp             CSSCCCSS----CCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCS
T ss_pred             CCCcCCCC----CcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            36777777    9999999999999999999999999999998864

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=6.5e-11  Score=67.20  Aligned_cols=42  Identities=26%  Similarity=0.373  Sum_probs=38.2

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emm_A            2 SSGSSGTG----ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCSCSSC----CCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSS
T ss_pred             CCcCCcCC----CCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            36777887    9999999999999999999999999999998864

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=6.7e-11  Score=66.65  Aligned_cols=42  Identities=19%  Similarity=0.387  Sum_probs=37.9

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            2 SSGSSGTD----SKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCC----CCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCcCCCC----CCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            36677777    9999999999999999999999999999998764

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=9.7e-11  Score=66.48  Aligned_cols=42  Identities=33%  Similarity=0.492  Sum_probs=38.3

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|+.|++.|.....|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eme_A            2 SSGSSGSG----EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCTTCC----CCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSS
T ss_pred             CCCCCCCC----CCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            46777888    9999999999999999999999999999998864

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5.9e-11  Score=67.50  Aligned_cols=42  Identities=26%  Similarity=0.504  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emy_A            2 SSGSSGTG----ENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP   43 (46)
T ss_dssp             CCCCCCCS----SCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCS
T ss_pred             CCCCCCCC----CcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCC
Confidence            36777777    9999999999999999999999999999998864

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=6.6e-11  Score=67.17  Aligned_cols=42  Identities=24%  Similarity=0.467  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|+.|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq3_A            2 SSGSSGTG----EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP   43 (46)
T ss_dssp             CCCCSSCC----CCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCS
T ss_pred             CcccCCCC----CCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            36777877    9999999999999999999999999999998864

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.96  E-value=2.8e-10  Score=70.67  Aligned_cols=52  Identities=23%  Similarity=0.354  Sum_probs=48.1

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      .+|...|.....|..|+++|++    ++||.|..|++.|.....|..|+++|+++.
T Consensus        18 ~~C~k~f~~~~~L~~H~~~h~~----~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           18 VECGKAFSRSSILVQHQRVHTG----EKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             SSSCCEESSHHHHHHHHHGGGC----SCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCCCccCCHHHHHHHHHhcCC----CCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            4578899999999999999999    999999999999999999999999998864

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=1.1e-10  Score=66.46  Aligned_cols=41  Identities=24%  Similarity=0.477  Sum_probs=37.4

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccC-CCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYK-YETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~-ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++ ++||.|
T Consensus         3 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C   44 (46)
T 2eoy_A            3 SGSSGQK----EKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPS   44 (46)
T ss_dssp             CCCCCCC----SCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSS
T ss_pred             CccccCC----CCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCC
Confidence            6677777    9999999999999999999999999999 998764

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.1e-10  Score=66.44  Aligned_cols=41  Identities=29%  Similarity=0.553  Sum_probs=37.4

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         3 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytq_A            3 SGSSGAG----EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP   43 (46)
T ss_dssp             CSSCSSC----CCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCC
T ss_pred             CCcCcCC----CCCcCCCccChhhCChHHHHHHHHHhCCCCCCCC
Confidence            5677777    9999999999999999999999999999998864

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=7e-11  Score=67.07  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|+.|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en8_A            2 SSGSSGSG----EKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP   43 (46)
T ss_dssp             CCCCCCCC----CSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCC
T ss_pred             CccccCCC----CCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            36777777    9999999999999999999999999999998864

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5.4e-11  Score=67.65  Aligned_cols=42  Identities=24%  Similarity=0.403  Sum_probs=38.2

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emh_A            2 SSGSSGTG----ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP   43 (46)
T ss_dssp             CCCCSCSC----CCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSS
T ss_pred             CCCCCCCC----CCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCC
Confidence            46777877    9999999999999999999999999999998864

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=7.5e-11  Score=66.95  Aligned_cols=42  Identities=26%  Similarity=0.425  Sum_probs=37.8

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2epw_A            2 SSGSSGTG----EKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP   43 (46)
T ss_dssp             CCCCCCCC----CCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCC
T ss_pred             cCcccCCC----CCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            36677777    9999999999999999999999999999998764

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=6.5e-11  Score=67.31  Aligned_cols=42  Identities=29%  Similarity=0.479  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ytk_A            2 SSGSSGSG----EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCSSS----SCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSC
T ss_pred             CCcccCCC----CCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCC
Confidence            36777777    9999999999999999999999999999998864

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=98.96  E-value=2.1e-11  Score=74.83  Aligned_cols=48  Identities=15%  Similarity=0.342  Sum_probs=38.7

Q ss_pred             CccccccccCcccCCchhHhhhcccccCCCChHHHHH--HHHHHHhhhhc
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKR--RLSARLKKRNL   90 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~--~~~~~~~~~~~   90 (140)
                      |+||.|..|+++|.+...|..|+++|++++||.|..+  .|..+...+.+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H   51 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH   51 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHH
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHH
Confidence            8999999999999999999999999999999976444  44433333333

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=7.4e-11  Score=66.46  Aligned_cols=41  Identities=22%  Similarity=0.397  Sum_probs=37.0

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         1 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (44)
T 2emx_A            1 GSSGSSG----EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP   41 (44)
T ss_dssp             CCCCCSS----CCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSC
T ss_pred             CCCCcCC----CcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            4567777    9999999999999999999999999999998764

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=7.6e-11  Score=67.01  Aligned_cols=42  Identities=21%  Similarity=0.362  Sum_probs=37.8

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|+.|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eoq_A            2 SSGSSGTG----EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP   43 (46)
T ss_dssp             CCCCCSSS----SCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSC
T ss_pred             CCCCCCCC----CCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            36677777    9999999999999999999999999999998864

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=9.5e-11  Score=66.60  Aligned_cols=42  Identities=26%  Similarity=0.467  Sum_probs=38.3

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en1_A            2 SSGSSGSG----EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP   43 (46)
T ss_dssp             CSTTCCCC----CCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCC
T ss_pred             CcccCCCC----CCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            46777887    9999999999999999999999999999998864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=7.4e-11  Score=66.97  Aligned_cols=42  Identities=26%  Similarity=0.445  Sum_probs=38.2

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~H~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C   43 (46)
T 2eor_A            2 SSGSSGTG----EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP   43 (46)
T ss_dssp             CSSSSSSC----CCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSS
T ss_pred             CCCcCcCC----CcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCC
Confidence            36777777    9999999999999999999999999999999865

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.95  E-value=1.8e-10  Score=72.25  Aligned_cols=61  Identities=16%  Similarity=0.242  Sum_probs=54.5

Q ss_pred             CCCCCCCCCcCCCCchHHHHhh-hhcCCCCCCccccccc--cCcccCCchhHhhhcccccCCCChHHH
Q 044394           13 KNPNNVQNPNRKENQDVEYDGR-IHSHPCKKYGPYKCPK--CNGAFGTSQAFAAHMRSHYKYETSAER   77 (140)
Q Consensus        13 ~~~~~~~~~~~~k~s~L~~H~r-~Htg~h~~ekP~~C~~--Cgk~F~~~~~L~~H~r~Ht~ekp~~~~   77 (140)
                      .+....|+..|.....|..|++ +|++    ++||.|..  |++.|.....|..|+++|++++||.+.
T Consensus         9 ~C~~~~C~~~f~~~~~L~~H~~~~H~~----~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   72 (79)
T 2dlk_A            9 PCDFPGCGRIFSNRQYLNHHKKYQHIH----QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   72 (79)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHHHGGGS----CCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             cCCCCCCcCccCCHHHHHHHHHHHhCC----CCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCC
Confidence            3444458899999999999999 7999    99999998  999999999999999999999998754

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=5.4e-11  Score=67.76  Aligned_cols=42  Identities=26%  Similarity=0.608  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|+.|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eoo_A            2 SSGSSGSG----ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP   43 (46)
T ss_dssp             CCCCCCSC----CCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCC
T ss_pred             CCCCCCCC----CCCEEccccCcccCCHHHHHHHHHHHcCCCCCCC
Confidence            46777777    9999999999999999999999999999998864

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.8e-11  Score=67.86  Aligned_cols=42  Identities=26%  Similarity=0.488  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.....|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A            2 SSGSSGTG----EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             CCCCCSCC----CCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             ccccccCC----CCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            36777777    9999999999999999999999999999998864

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=8.6e-11  Score=66.69  Aligned_cols=42  Identities=24%  Similarity=0.430  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|+.|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eov_A            2 SSGSSGTG----EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP   43 (46)
T ss_dssp             CCCCCCSS----CCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCS
T ss_pred             CCCCCCCC----CCCccCCccChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            36777777    9999999999999999999999999999998764

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=9.3e-11  Score=66.75  Aligned_cols=42  Identities=21%  Similarity=0.325  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em5_A            2 SSGSSGSS----TKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCC----SCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSC
T ss_pred             CCcCCCCC----CCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            46777777    9999999999999999999999999999998864

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=6.3e-11  Score=67.37  Aligned_cols=42  Identities=24%  Similarity=0.427  Sum_probs=38.2

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|+++|++    ++||.|..|++.|.....|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emp_A            2 SSGSSGTG----VKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP   43 (46)
T ss_dssp             CCCSCSSC----CCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSC
T ss_pred             CcccccCC----CcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            46777887    9999999999999999999999999999998864

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.94  E-value=1.2e-10  Score=66.29  Aligned_cols=41  Identities=27%  Similarity=0.554  Sum_probs=37.5

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         3 h~~~h~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2el6_A            3 SGSSGAG----VNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP   43 (46)
T ss_dssp             SCCSSCC----CCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSC
T ss_pred             CCCCCCC----CCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            5677777    9999999999999999999999999999998864

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=5.7e-11  Score=67.67  Aligned_cols=42  Identities=31%  Similarity=0.602  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 ~h~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emz_A            2 SSGSSGSG----ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP   43 (46)
T ss_dssp             CCCSCSSC----CCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCS
T ss_pred             CCCcCCCC----CCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            36777887    9999999999999999999999999999998764

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=7.9e-11  Score=66.95  Aligned_cols=42  Identities=33%  Similarity=0.560  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ytd_A            2 SSGSSGSG----EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP   43 (46)
T ss_dssp             CCCCCSCC----CCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCS
T ss_pred             CCccccCC----CcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCC
Confidence            36777777    9999999999999999999999999999998864

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.94  E-value=4.1e-10  Score=66.41  Aligned_cols=49  Identities=22%  Similarity=0.314  Sum_probs=45.7

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      .+|+..|.....|..|+++|++    ++||.|+.|++.|.....|..|++.|.
T Consensus         8 ~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            8 SYCGKFFRSNYYLNIHLRTHTG----EKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             TTTCCBCSCHHHHHHHHHHHHC----CCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCcchhCChHHHHHHHHHcCC----CCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            4578899999999999999999    999999999999999999999998875

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1e-10  Score=66.57  Aligned_cols=41  Identities=32%  Similarity=0.546  Sum_probs=37.5

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         3 H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em2_A            3 SGSSGSG----EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP   43 (46)
T ss_dssp             CCCSCCC----CCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCS
T ss_pred             CCCCCCC----CCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            6677777    9999999999999999999999999999998864

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=1.3e-10  Score=66.09  Aligned_cols=41  Identities=20%  Similarity=0.270  Sum_probs=37.7

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         3 H~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yso_A            3 SGSSGSR----EKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGP   43 (46)
T ss_dssp             CSCCSSC----CCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCT
T ss_pred             cccccCC----CCCEEccccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            6677777    9999999999999999999999999999999865

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=1.3e-10  Score=65.57  Aligned_cols=41  Identities=17%  Similarity=0.277  Sum_probs=37.0

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         3 h~~~h~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            3 SGSSGAA----KTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CSCSCSS----SCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCC----CcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            5666777    9999999999999999999999999999998764

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=1.3e-10  Score=65.97  Aligned_cols=41  Identities=32%  Similarity=0.491  Sum_probs=37.5

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.....|..|+++|++++||.+
T Consensus         3 h~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2enc_A            3 SGSSGSG----EKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP   43 (46)
T ss_dssp             CSSCCCC----CCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSS
T ss_pred             CCCCCCC----CCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCC
Confidence            5677777    9999999999999999999999999999998864

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=98.93  E-value=4.3e-11  Score=76.74  Aligned_cols=62  Identities=21%  Similarity=0.330  Sum_probs=52.9

Q ss_pred             CCCCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHH
Q 044394           14 NPNNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKR   79 (140)
Q Consensus        14 ~~~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~   79 (140)
                      |+...|+..|.....|..|+++|.+    ++||.|..|++.|.....|..|++.|+++++|.|..+
T Consensus         7 C~~~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   68 (90)
T 1a1h_A            7 CPVESCDRRFSQSGSLTRHIRIHTG----QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC   68 (90)
T ss_dssp             CCSSSCCCEESSHHHHHHHHHHHHC----CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTT
T ss_pred             CCCCCCCCccCCHHHHHHHHHHhCC----CCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCC
Confidence            3333578889999999999999998    8999999999999999999999999999998876443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.92  E-value=7.5e-10  Score=66.04  Aligned_cols=52  Identities=23%  Similarity=0.362  Sum_probs=47.6

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhc-ccccCCC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHM-RSHYKYE   72 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~-r~Ht~ek   72 (140)
                      .+|...|...+.|..|+++|++    ++||.|+.|++.|.+...|..|+ ++|+++.
T Consensus         6 ~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            6 EVCTRAFARQEHLKRHYRSHTN----EKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             TTTCCCBSCHHHHHHHHHTTTS----SCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CCCccccCCHHHHHHHHHHhCC----CCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            4678999999999999999999    99999999999999999999996 7888754

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.92  E-value=1.2e-10  Score=75.53  Aligned_cols=62  Identities=21%  Similarity=0.281  Sum_probs=54.5

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHHHH
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRL   81 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~~   81 (140)
                      +.+|...|.....|..|+++|.+    ++||.|..|++.|.....|..|++.|.++++|.|..+..
T Consensus        11 C~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   72 (96)
T 2dmd_A           11 CEVCGKCFSRKDKLKTHMRCHTG----VKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPY   72 (96)
T ss_dssp             BTTTTBCCCCHHHHHHHGGGCCC----CCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSC
T ss_pred             CCCCCCccCCHHHHHHHHHhcCC----CCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCC
Confidence            35678899999999999999998    999999999999999999999999999999987655443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=98.92  E-value=8.2e-10  Score=72.90  Aligned_cols=56  Identities=21%  Similarity=0.437  Sum_probs=51.7

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChH
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSA   75 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~   75 (140)
                      +.+|...|.....|..|+++|++    ++||.|..|++.|.....|..|+++|++++++.
T Consensus        48 C~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~  103 (106)
T 2ee8_A           48 CDICHKAFRRQDHLRDHRYIHSK----EKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPT  103 (106)
T ss_dssp             CSSSCCBCSCHHHHHHHGGGSCC----CCTTSCSSSCCCCSSHHHHHHHHHHTTSCCCCC
T ss_pred             CCCccchhCCHHHHHHHHHHhCC----CCCeECCCcCCcccCHHHHHHHHHHhCCCCCCc
Confidence            35678999999999999999999    999999999999999999999999999998764

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.2e-10  Score=66.18  Aligned_cols=41  Identities=24%  Similarity=0.481  Sum_probs=37.4

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|+.|++.|.+...|..|+++|++++||.+
T Consensus         3 H~~~h~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ysp_A            3 SGSSGTG----EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP   43 (46)
T ss_dssp             CCCCCSS----CCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCC
T ss_pred             CCcCCCC----CCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCC
Confidence            5677777    9999999999999999999999999999998864

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=9.3e-11  Score=66.64  Aligned_cols=42  Identities=29%  Similarity=0.506  Sum_probs=38.0

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         2 ~h~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en6_A            2 SSGSSGSG----EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP   43 (46)
T ss_dssp             CCSCCCCS----SCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSS
T ss_pred             CCCCccCC----CcCeECCCCCcccCchHHHHHHHHHcCCCCCCCC
Confidence            36677777    9999999999999999999999999999999864

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.2e-10  Score=66.29  Aligned_cols=41  Identities=32%  Similarity=0.562  Sum_probs=37.2

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         3 h~~~h~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ytm_A            3 SGSSGTG----EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP   43 (46)
T ss_dssp             SCCCCSS----CCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCC
T ss_pred             CCcCCCC----CCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            5667777    9999999999999999999999999999998864

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2e-10  Score=65.28  Aligned_cols=41  Identities=27%  Similarity=0.466  Sum_probs=37.3

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcc-cccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMR-SHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r-~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|..|++.|.+...|..|++ +|++++||.+
T Consensus         3 H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C   44 (47)
T 2epx_A            3 SGSSGTG----KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP   44 (47)
T ss_dssp             CCCCCCC----CCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSC
T ss_pred             cccccCC----CCCEECCccCchhCChHHHHHHhHhhcCCCCCCCC
Confidence            6677777    999999999999999999999999 9999998764

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=98.90  E-value=4.6e-11  Score=75.16  Aligned_cols=59  Identities=19%  Similarity=0.250  Sum_probs=52.1

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHH
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKR   79 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~   79 (140)
                      .+|+..|.....|..|+++|.+    ++||.|..|++.|.....|..|++.|++++++.+..+
T Consensus         5 ~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   63 (82)
T 2kmk_A            5 KICGKSFKRSSTLSTHLLIHSD----TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC   63 (82)
T ss_dssp             SSSCCEESSHHHHHHHHHHHHT----CCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTT
T ss_pred             CCCcccccCchhHHHHHHHcCC----CCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCc
Confidence            4678888999999999999998    9999999999999999999999999999998876543

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.89  E-value=9.3e-10  Score=72.91  Aligned_cols=47  Identities=13%  Similarity=0.208  Sum_probs=24.9

Q ss_pred             CCCcC-CCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhh-cccccC
Q 044394           19 QNPNR-KENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAH-MRSHYK   70 (140)
Q Consensus        19 ~~~~~-~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H-~r~Ht~   70 (140)
                      |...| .....|..|+++| +    ++||.|..|++.|.....|..| +++|++
T Consensus        40 C~k~F~~~~~~L~~H~~~h-~----~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           40 CQAVGRKTIEGLKKHMENC-K----QEMFTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             TCSCEESSHHHHHHHHHHH-C----CCCCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             CCCCcccCHHHHHHHHHHH-C----CCCeECCCCCCeeCCHHHHHHHhHHhcCC
Confidence            44445 4555555555555 5    5555555555555555555555 455544

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.8e-10  Score=65.51  Aligned_cols=41  Identities=27%  Similarity=0.438  Sum_probs=37.2

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+++|++    ++||.|+.|++.|.+...|..|+++|++++||.+
T Consensus         3 h~~~h~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em8_A            3 SGSSGSG----EKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP   43 (46)
T ss_dssp             CCCCCCS----CCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCS
T ss_pred             CCCCCCC----CCCeECcccCchhCCHHHHHHHHHHHcCCCCCCC
Confidence            5667777    9999999999999999999999999999998864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=4.7e-10  Score=62.11  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=34.4

Q ss_pred             hhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChH
Q 044394           34 RIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSA   75 (140)
Q Consensus        34 r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~   75 (140)
                      ++|++    ++||.|+.|++.|.....|..|+++|++++||.
T Consensus         3 ~~h~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   40 (41)
T 2ept_A            3 SGSSG----QRVYECQECGKSFRQKGSLTLHERIHTGSGPSS   40 (41)
T ss_dssp             SSCCC----CCCEECSSSCCEESSHHHHHHHGGGCCCCSCSC
T ss_pred             CccCC----CCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcC
Confidence            34556    999999999999999999999999999999875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.86  E-value=7.6e-10  Score=68.52  Aligned_cols=48  Identities=23%  Similarity=0.487  Sum_probs=45.3

Q ss_pred             CCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhccccc
Q 044394           18 VQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        18 ~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      .|...|.....|..|+++|++    ++||.|..|++.|.....|..|+++|+
T Consensus        26 ~C~k~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           26 SCDRRFSRSDELTRHIRIHTG----QKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             TBCCEESSHHHHHHHHHHHHC----CCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCCccCCHHHHHHHHHhhCC----CCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            488999999999999999999    999999999999999999999999885

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=98.86  E-value=1.1e-09  Score=70.04  Aligned_cols=53  Identities=19%  Similarity=0.339  Sum_probs=47.8

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      +.+|...|.....|..|+++|++    ++||.|..|++.|.....|..|+++|++++
T Consensus        37 C~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           37 CRICMRNFSRSDHLTTHIRTHTG----EKPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CTTTCCEESCHHHHHHHHHHHHC----CCCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCCCCcccCCHHHHHHHHHHcCC----CCCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            35568899999999999999999    999999999999999999999999999875

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=6.4e-10  Score=60.04  Aligned_cols=36  Identities=19%  Similarity=0.459  Sum_probs=32.6

Q ss_pred             hhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCC
Q 044394           34 RIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYET   73 (140)
Q Consensus        34 r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp   73 (140)
                      ++|++    ++||.|..|++.|.+...|..|+++|++++|
T Consensus         2 ~~h~~----~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSS----GRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCC----CCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCC----CCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            45666    9999999999999999999999999999875

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=3.4e-10  Score=64.05  Aligned_cols=40  Identities=20%  Similarity=0.488  Sum_probs=35.7

Q ss_pred             hhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           33 GRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        33 ~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~h~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (45)
T 2epu_A            4 GSSGTG----QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS   43 (45)
T ss_dssp             CCCCCS----CCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCS
T ss_pred             CCCCCC----CcCccCCCCCCccCChHHHHHHHHHhCCCCCCCC
Confidence            345666    9999999999999999999999999999998864

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=4.1e-10  Score=64.07  Aligned_cols=40  Identities=23%  Similarity=0.321  Sum_probs=36.1

Q ss_pred             hhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           33 GRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        33 ~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +++|++    ++||.|..|++.|.+...|..|+++|++++||.|
T Consensus         4 ~~~h~~----~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eom_A            4 GSSGHG----ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCC----CSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSC
T ss_pred             CCCCCC----CCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCC
Confidence            456666    9999999999999999999999999999998864

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=98.84  E-value=4.4e-10  Score=79.02  Aligned_cols=71  Identities=20%  Similarity=0.345  Sum_probs=58.0

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccc--cCcccCCchhHhhhcccccCCCChHHH----HHHHHHHHhhhh
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK--CNGAFGTSQAFAAHMRSHYKYETSAER----KRRLSARLKKRN   89 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~--Cgk~F~~~~~L~~H~r~Ht~ekp~~~~----~~~~~~~~~~~~   89 (140)
                      +.+|+..|.....|..|+++|++    ++||.|..  |++.|.....|..|+++|+++++|.|.    .+.|........
T Consensus        65 C~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~  140 (155)
T 2rpc_A           65 CPREGKSFKAKYKLVNHIRVHTG----EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK  140 (155)
T ss_dssp             CTTSSCCCSSHHHHHHHTHHHHC----CCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHH
T ss_pred             CCCcccccCCHHHHHHHHHhcCC----CCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHH
Confidence            45668889999999999999999    99999988  999999999999999999999999764    444444333333


Q ss_pred             c
Q 044394           90 L   90 (140)
Q Consensus        90 ~   90 (140)
                      +
T Consensus       141 H  141 (155)
T 2rpc_A          141 H  141 (155)
T ss_dssp             S
T ss_pred             H
Confidence            3

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.84  E-value=1.1e-09  Score=59.06  Aligned_cols=36  Identities=28%  Similarity=0.624  Sum_probs=32.7

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCC
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      |+++|++    ++||.|+.|++.|.+...|..|+++|+++
T Consensus         2 H~~~h~~----~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTG----IKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCC----SSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCC----CCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            5677777    99999999999999999999999999874

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=8.2e-10  Score=72.83  Aligned_cols=54  Identities=11%  Similarity=0.169  Sum_probs=42.5

Q ss_pred             CCCCCcCC-CCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCC
Q 044394           17 NVQNPNRK-ENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYET   73 (140)
Q Consensus        17 ~~~~~~~~-k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp   73 (140)
                      .+|...|. ....|..|+++|++   .++||.|..|++.|.+...|..|+++|++++|
T Consensus        28 ~~C~k~f~~~~~~L~~H~~~h~~---~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A           28 PTCNVVTRKTLVGLKKHMEVCQK---LQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             TTTCCCCSSCSHHHHHHHHHHHH---HHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             CCCCCChhhhHHHHHHHHHHHcC---CCCCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            45677888 88888888888764   15788888888888888888888888888765

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.82  E-value=1.9e-09  Score=57.36  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=31.0

Q ss_pred             CCCCccccccccCcccCCchhHhhhcccccCCCC
Q 044394           40 CKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYET   73 (140)
Q Consensus        40 h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp   73 (140)
                      |++++||.|..|++.|.....|..|+++|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            4449999999999999999999999999999875

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=98.82  E-value=8.6e-11  Score=78.85  Aligned_cols=54  Identities=22%  Similarity=0.375  Sum_probs=36.5

Q ss_pred             CCCcCCCCchHHHHhhhhcCCCCCCcccccc--ccCcccCCchhHhhhcccccCCCChHH
Q 044394           19 QNPNRKENQDVEYDGRIHSHPCKKYGPYKCP--KCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        19 ~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~--~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |+..|.....|..|+++|.+    ++||.|.  .|++.|.....|..|++.|.+++++.+
T Consensus        14 C~~~f~~~~~l~~H~~~h~~----~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C   69 (119)
T 2jp9_A           14 CNKRYFKLSHLQMHSRKHTG----EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC   69 (119)
T ss_dssp             SCCCBSCHHHHHHHHHHHHT----TCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEEC
T ss_pred             CcchhCCHHHHHHHHHhhCC----CCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccC
Confidence            56666666667777666666    6667776  577777766677777666666666654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=98.82  E-value=1.4e-09  Score=69.84  Aligned_cols=63  Identities=17%  Similarity=0.177  Sum_probs=53.9

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHHHHHHH
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSAR   84 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~~~~~   84 (140)
                      .+|+..|...+.|..|+++|++    ++||.|..|++.|.....|..|++.|.+ .++.+..+...+.
T Consensus         7 ~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~   69 (88)
T 1llm_C            7 RICMRNFSRSDHLTTHIRTHTG----EKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLS   69 (88)
T ss_dssp             TTTCCEESCHHHHHHHHHHHHC----CCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred             CCCCCccCCHHHHHHHHHHcCC----CCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHH
Confidence            4678999999999999999999    9999999999999999999999999885 6666655544433

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=98.81  E-value=1.4e-09  Score=76.20  Aligned_cols=55  Identities=16%  Similarity=0.155  Sum_probs=50.6

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCCh
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETS   74 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~   74 (140)
                      +.+|+..|...+.|..|+++|++    ++||.|+.|++.|.+...|..|++.|.+++|+
T Consensus        53 C~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~  107 (133)
T 2lt7_A           53 CRYCEKVFPLAEYRTKHEIHHTG----ERRYQCLACGKSFINYQFMSSHIKSVHSQDPS  107 (133)
T ss_dssp             CSSSSCEESSHHHHHHHHHHHHT----CCCEEESSSCCEESSHHHHHHHHHHHTCCCTT
T ss_pred             CCccCeecccccchhhhccccCC----CccccCCCCCCCcCCHHHHHHHhHHhcCCCCC
Confidence            35678899999999999999999    99999999999999999999999999887764

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.81  E-value=1.8e-09  Score=57.28  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=30.9

Q ss_pred             CCCCccccccccCcccCCchhHhhhcccccCCCC
Q 044394           40 CKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYET   73 (140)
Q Consensus        40 h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp   73 (140)
                      |++++||.|..|++.|.+...|..|+++|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            3449999999999999999999999999999875

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.81  E-value=1.6e-09  Score=59.39  Aligned_cols=35  Identities=26%  Similarity=0.477  Sum_probs=32.7

Q ss_pred             CCCccccccccCcccCCchhHhhhcccccCCCChH
Q 044394           41 KKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSA   75 (140)
Q Consensus        41 ~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~   75 (140)
                      ++++||.|..|++.|.....|..|+++|++++||.
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            34999999999999999999999999999999875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.80  E-value=4.1e-10  Score=72.83  Aligned_cols=60  Identities=20%  Similarity=0.288  Sum_probs=53.0

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCC--CChHHHHHH
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKY--ETSAERKRR   80 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~e--kp~~~~~~~   80 (140)
                      .+|+..|.....|..|+++|++    ++||.|..|++.|.....|..|++.|.++  ++|.|..+.
T Consensus        11 ~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~   72 (95)
T 2yt9_A           11 EICGKIFRDVYHLNRHKLSHSG----EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCG   72 (95)
T ss_dssp             SSSCCEESSSHHHHHHHHHSCS----SCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSC
T ss_pred             CCCCCccCChHHHHHHHHhcCC----CCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCcc
Confidence            4678899999999999999999    99999999999999999999999999987  888764443

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=7.5e-10  Score=62.77  Aligned_cols=40  Identities=28%  Similarity=0.502  Sum_probs=36.2

Q ss_pred             hhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           33 GRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        33 ~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         4 ~~~h~~----~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep0_A            4 GSSGTG----EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCSSTT----CCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSC
T ss_pred             CCCCCC----CCCeeCcccCcccCChHHHHHHHHHhCCCCCCCC
Confidence            456777    9999999999999999999999999999998864

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=1e-09  Score=61.64  Aligned_cols=38  Identities=16%  Similarity=0.330  Sum_probs=34.6

Q ss_pred             hhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           35 IHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        35 ~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +|++    ++||.|..|++.|.....|..|+++|++++||.|
T Consensus         4 ~h~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            4 GSSG----NGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             CCSS----SCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             CcCC----CCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            4555    9999999999999999999999999999998864

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.79  E-value=2.2e-09  Score=71.33  Aligned_cols=58  Identities=16%  Similarity=0.250  Sum_probs=53.2

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHH
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERK   78 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~   78 (140)
                      +.|...|.....|..|+++|.+    ++||.|..|++.|.....|..|+++|.++++|.|..
T Consensus        13 C~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   70 (110)
T 2csh_A           13 CQCGKSFTHKSQRDRHMSMHLG----LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI   70 (110)
T ss_dssp             CTTSCEESSHHHHHHHHHHHSC----CCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSS
T ss_pred             ccCCCccCCHHHHHHHHHHcCC----CcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCC
Confidence            3588999999999999999999    999999999999999999999999999999987643

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=98.78  E-value=1.1e-09  Score=71.22  Aligned_cols=58  Identities=21%  Similarity=0.281  Sum_probs=51.9

Q ss_pred             CCCCcCCCCchHHHHhhhhcCCCCCCcccccc--ccCcccCCchhHhhhcccccCCCChHHHHH
Q 044394           18 VQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP--KCNGAFGTSQAFAAHMRSHYKYETSAERKR   79 (140)
Q Consensus        18 ~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~--~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~   79 (140)
                      .|+..|.....|..|+++|.+    ++||.|.  .|++.|.....|..|++.|+++++|.|..+
T Consensus        22 ~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   81 (100)
T 2ebt_A           22 GCTKVYTKSSHLKAHLRTHTG----EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC   81 (100)
T ss_dssp             SCCCEESCHHHHHHHHHHHSC----CCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSS
T ss_pred             CCCCcccCHHHHHHHHHHhCC----CCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCC
Confidence            378899999999999999999    9999996  699999999999999999999999876443

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.78  E-value=3.7e-09  Score=68.36  Aligned_cols=54  Identities=26%  Similarity=0.369  Sum_probs=49.8

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYET   73 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp   73 (140)
                      +.+|+..|.....|..|+++|++    ++||.|..|++.|.....|..|+++|+++++
T Consensus        39 C~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           39 CKTCDYAAADSSSLNKHLRIHSD----ERPFKCQICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             CSSSCCEESSHHHHHHHHHHSCC----CCCEECSSSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             CCCCCCccCCHHHHHHHHHHhCC----CCCccCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            35678899999999999999999    9999999999999999999999999998764

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.78  E-value=3.7e-10  Score=74.91  Aligned_cols=78  Identities=18%  Similarity=0.154  Sum_probs=57.9

Q ss_pred             CCcCCCCchHHHHhhhhcCCCCCCccccccccCccc-CCchhHhhhcccccCCCChHHHHH--HHHHHHhhhhccccccC
Q 044394           20 NPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAF-GTSQAFAAHMRSHYKYETSAERKR--RLSARLKKRNLRLVHST   96 (140)
Q Consensus        20 ~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F-~~~~~L~~H~r~Ht~ekp~~~~~~--~~~~~~~~~~~~~~~~~   96 (140)
                      .+.+.....|..|+++|++    ++||.|+.|++.| .....|..|+++| +++||.|..+  .|..+...+.+ ++..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~----~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H-~~~~H   86 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVD----KGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYH-VMANH   86 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHH----TSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHH-HHHHT
T ss_pred             CCCCCCchHHHHHHHHhcC----CCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHH-hHHhc
Confidence            3566778889999999999    9999999999999 9999999999999 9999976444  34333333333 03333


Q ss_pred             CCceecC
Q 044394           97 EGLTMMP  103 (140)
Q Consensus        97 ~g~~~~p  103 (140)
                      .+..+.|
T Consensus        87 ~~~p~~~   93 (96)
T 2ctd_A           87 NSLPSGP   93 (96)
T ss_dssp             CCCSSCS
T ss_pred             CCCCCCC
Confidence            4544444

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=98.77  E-value=2.3e-09  Score=77.79  Aligned_cols=64  Identities=20%  Similarity=0.305  Sum_probs=53.7

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHHHHHH
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSA   83 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~~~~   83 (140)
                      +.+|+..|.....|..|+++|++    ++||.|+.|++.|.....|..|+++|++++||.|..+...+
T Consensus       108 C~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f  171 (190)
T 2i13_A          108 CPECGKSFSQLAHLRAHQRTHTG----EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF  171 (190)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHHC----CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             CCCCCCccCCHHHHHHHHHHhCC----CCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCcc
Confidence            35678888888999999999998    99999999999999999999999999999998765544433

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=98.77  E-value=2.3e-09  Score=68.31  Aligned_cols=56  Identities=21%  Similarity=0.348  Sum_probs=48.1

Q ss_pred             CCCcCCCCchHHHHhhhhcCCCCCCcccccc--ccCcccCCchhHhhhcccccCCCChHHHH
Q 044394           19 QNPNRKENQDVEYDGRIHSHPCKKYGPYKCP--KCNGAFGTSQAFAAHMRSHYKYETSAERK   78 (140)
Q Consensus        19 ~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~--~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~   78 (140)
                      |+..|.....|..|+++|.+    ++||.|+  .|++.|.....|..|++.|+++++|.+..
T Consensus        13 C~~~f~~~~~l~~H~~~h~~----~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   70 (89)
T 2wbs_A           13 CGKTYTKSSHLKAHLRTHTG----EKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK   70 (89)
T ss_dssp             TCCEESSHHHHHHHHTTSCS----SCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSS
T ss_pred             CCCcCCCHHHHHHHHHhcCC----CCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCC
Confidence            77888888899999988888    8999996  59999999999999999999988887543

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=8.7e-10  Score=62.59  Aligned_cols=40  Identities=25%  Similarity=0.504  Sum_probs=36.0

Q ss_pred             hhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           33 GRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        33 ~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +++|++    ++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         4 ~~~h~~----~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytt_A            4 GSSGEG----EKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP   43 (46)
T ss_dssp             SSSCSC----CCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSC
T ss_pred             CCCCCC----CCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            456677    9999999999999999999999999999998864

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=98.75  E-value=2.5e-09  Score=72.34  Aligned_cols=57  Identities=16%  Similarity=0.247  Sum_probs=49.4

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccc--cCcccCCchhHhhhcccccCCCChHH
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK--CNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~--Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      +.+|+..|.....|..|+++|++    ++||.|..  |++.|.....|..|+++|+++++|.+
T Consensus        37 C~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (124)
T 1ubd_C           37 CAECGKAFVESSKLKRHQLVHTG----EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC   95 (124)
T ss_dssp             CTTTCCEESSHHHHHHHGGGTSC----CCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCC
T ss_pred             CCCCCchhCCHHHHHHHHHHcCC----CCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceEC
Confidence            45678888888899999998888    89999975  99999999999999999999988877

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.74  E-value=4.5e-09  Score=66.50  Aligned_cols=72  Identities=13%  Similarity=0.141  Sum_probs=53.9

Q ss_pred             ccccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChH
Q 044394            4 THVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSA   75 (140)
Q Consensus         4 ~~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~   75 (140)
                      .|...|...+-. +.+|...|.....|..|+++|......++||.|..|++.|.....|..|+++|.+++++.
T Consensus         5 ~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~   77 (86)
T 1x6h_A            5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE   77 (86)
T ss_dssp             CCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCC
T ss_pred             cccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcc
Confidence            455555444433 355688899999999999887661111278999999999999999999999999987654

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=98.74  E-value=5.5e-10  Score=81.09  Aligned_cols=60  Identities=20%  Similarity=0.346  Sum_probs=51.9

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHHH
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRR   80 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~   80 (140)
                      .+|+..|.....|..|+++|.+    ++||.|+.|++.|.....|..|++.|+++++|.|..+.
T Consensus        81 ~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  140 (190)
T 2i13_A           81 PECGKSFSQRANLRAHQRTHTG----EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG  140 (190)
T ss_dssp             TTTCCEESCHHHHHHHHHHHHT----CCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             cccCCccCCHHHHHHHHHhcCC----CCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCC
Confidence            4568888889999999999998    89999999999999999999999999999998765443

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=98.73  E-value=3.6e-09  Score=66.28  Aligned_cols=50  Identities=26%  Similarity=0.403  Sum_probs=46.2

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      .+|...|.....|..|+++|++    ++||.|..|++.|.+...|..|+++|+|
T Consensus        33 ~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           33 QYCGKRFHQKSDMKKHTFIHTG----EKPHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             SSSCCEESSHHHHHHHHHHHHT----CCCEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             CcCChhhCCHHHHHHHHHHhcC----CCCCcCCCcchhhCChHHHHHHHHhhCC
Confidence            4578899999999999999999    9999999999999999999999999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.73  E-value=6.4e-09  Score=68.94  Aligned_cols=73  Identities=11%  Similarity=0.091  Sum_probs=54.5

Q ss_pred             ccccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHHHHH
Q 044394            4 THVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLS   82 (140)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~~~   82 (140)
                      +++..+...+-.. .+|...|.....|..|+++|.      +||.|..|++.|.....|..|+. |++++||.|..+...
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~------~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~   78 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR------NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRT   78 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH------HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEE
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC------CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccch
Confidence            3344444443333 456888889999999999883      58999999999999999999985 999999876554443


Q ss_pred             H
Q 044394           83 A   83 (140)
Q Consensus        83 ~   83 (140)
                      +
T Consensus        79 f   79 (107)
T 1wjp_A           79 F   79 (107)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.73  E-value=4.5e-10  Score=78.68  Aligned_cols=54  Identities=20%  Similarity=0.243  Sum_probs=40.4

Q ss_pred             CCcCCCCchHHHHhhhhcCCCCCCccccccc--cCcccCCchhHhhhcccccCCCChHHH
Q 044394           20 NPNRKENQDVEYDGRIHSHPCKKYGPYKCPK--CNGAFGTSQAFAAHMRSHYKYETSAER   77 (140)
Q Consensus        20 ~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~--Cgk~F~~~~~L~~H~r~Ht~ekp~~~~   77 (140)
                      ...|.....|..|+++|++    ++||.|..  |++.|.....|..|++.|+++++|.+.
T Consensus        46 ~~~f~~~~~l~~H~~~h~~----~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  101 (155)
T 2gli_A           46 LRPFKAQYMLVVHMRRHTG----EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE  101 (155)
T ss_dssp             TCCCSSHHHHHHHTHHHHC----CCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECC
T ss_pred             hhhhhhHHHHHHHHHhcCC----CCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCC
Confidence            4667777777777777777    77777764  777777777777777777777777653

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.73  E-value=4.8e-09  Score=63.57  Aligned_cols=50  Identities=20%  Similarity=0.259  Sum_probs=44.4

Q ss_pred             CCCCCcCCCCchHHHHhhh-h-cCCCCCCccccccccCcccCCchhHhhhcccccC
Q 044394           17 NVQNPNRKENQDVEYDGRI-H-SHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~-H-tg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      .+|...|.....|..|+++ | ++    ++||.|+.|++.|.+...|..|++.|.+
T Consensus        14 ~~C~k~f~~~~~l~~H~~~~H~~~----~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           14 KVCSRVYTHISNFCRHYVTSHKRN----VKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             TTTCCEESSHHHHHHHHHHHSSSS----CCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCCcchhCCHHHHHHHHHHHcCCC----CcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            5678899999999999988 7 57    8999999999999999999999987765

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=5.6e-09  Score=65.43  Aligned_cols=56  Identities=18%  Similarity=0.313  Sum_probs=45.9

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhc-ccccCCCC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHM-RSHYKYET   73 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~-r~Ht~ekp   73 (140)
                      .+|...|.....|..|+++|++. .+++||.|..|++.|.....|..|+ ..|.++++
T Consensus        11 ~~C~k~f~~~~~L~~H~~~h~~~-~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A           11 EICGFTCRQKASLNWHQRKHAET-VAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             SSSCCEESSHHHHHHHHHHHHHH-TTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCCeeCCHHHHHHHHHHhhcc-CCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            46788999999999999999830 0168999999999999999999998 56777654

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=98.72  E-value=4.3e-10  Score=76.14  Aligned_cols=73  Identities=18%  Similarity=0.171  Sum_probs=57.4

Q ss_pred             CCCCCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH----HHHHHHHHHhhh
Q 044394           13 KNPNNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE----RKRRLSARLKKR   88 (140)
Q Consensus        13 ~~~~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~----~~~~~~~~~~~~   88 (140)
                      .|+...|...|.....|..|+++| +    +++|.|..|++.|.....|..|++.|.+++++.+    +.+.|.......
T Consensus         7 ~C~~~~C~~~f~~~~~l~~H~~~h-~----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            7 ACPHKGCTKMFRDNSAMRKHLHTH-G----PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG-S----CCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             cCCCCCCcCccCCHHHHHHHHHHc-C----CCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            344446888999999999999998 7    8999999999999999999999999999999876    444444333333


Q ss_pred             hc
Q 044394           89 NL   90 (140)
Q Consensus        89 ~~   90 (140)
                      .+
T Consensus        82 ~H   83 (124)
T 1ubd_C           82 TH   83 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=98.72  E-value=8.3e-10  Score=71.90  Aligned_cols=50  Identities=24%  Similarity=0.428  Sum_probs=46.8

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      ..|...|.....|..|+++|++    ++||.|..|++.|.....|..|+++|++
T Consensus        51 ~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           51 EGCDWRFARSDELTRHYRKHTG----AKPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             SSCCCEESSHHHHHHHHHHHTS----CCSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CCCCCccCCHHHHHHHHHHhCC----CCCeECCCCcCccCCHHHHHHHHHHhCC
Confidence            3688999999999999999999    9999999999999999999999999874

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.68  E-value=3.5e-09  Score=59.76  Aligned_cols=37  Identities=27%  Similarity=0.486  Sum_probs=33.3

Q ss_pred             CCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           40 CKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        40 h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |++++||.|..|++.|.+...|..|+++|+++++|.+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C   41 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSG   41 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCC
Confidence            3449999999999999999999999999999998764

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=98.68  E-value=2.1e-09  Score=75.49  Aligned_cols=63  Identities=13%  Similarity=0.151  Sum_probs=51.3

Q ss_pred             CCCCCCCCCCCcCCCCchHHHHhhh-hcCCCCCCcc--------ccccccCcccCCchhHhhhcccccCCCChHHH
Q 044394           11 PGKNPNNVQNPNRKENQDVEYDGRI-HSHPCKKYGP--------YKCPKCNGAFGTSQAFAAHMRSHYKYETSAER   77 (140)
Q Consensus        11 ~~~~~~~~~~~~~~k~s~L~~H~r~-Htg~h~~ekP--------~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~   77 (140)
                      ...-++.+|+..|.....|..|+++ |.+    ..+        |.|..|++.|.....|..|++.|+++++|.+.
T Consensus        23 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~----~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   94 (155)
T 2rpc_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVG----GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCP   94 (155)
T ss_dssp             CCSSSCCCCCCCBSSHHHHHHHHHTTTSC----CTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECS
T ss_pred             hcccccccCCcccCCHHHHHHHHHhhcCC----CcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCC
Confidence            3444567788889999999999887 776    554        78999999999999999999999998888763

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=7.1e-09  Score=63.30  Aligned_cols=51  Identities=10%  Similarity=0.171  Sum_probs=45.5

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcccccc-ccCcccCCchhHhhhcccccCCCC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP-KCNGAFGTSQAFAAHMRSHYKYET   73 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~-~Cgk~F~~~~~L~~H~r~Ht~ekp   73 (140)
                      ..|...|. .+.|..|+++ ++    ++||.|+ .|++.|.....|..|+++|...++
T Consensus        14 ~~C~k~f~-~~~L~~H~~~-~~----~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           14 TYCTKEFV-FDTIQSHQYQ-CP----RLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             SSSCCEEE-HHHHHHHHHH-CS----SSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cccCCccC-HHHHHHHHHH-cC----CcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            34577888 9999999998 88    9999999 999999999999999999987664

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=3.1e-09  Score=60.48  Aligned_cols=41  Identities=27%  Similarity=0.485  Sum_probs=36.1

Q ss_pred             HhhhhcCCCCCCcccccc--ccCcccCCchhHhhhcccccCCCChHH
Q 044394           32 DGRIHSHPCKKYGPYKCP--KCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~--~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |.++|++    ++||.|.  .|++.|.....|..|+++|++++||.+
T Consensus         3 ~~~~H~~----~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C   45 (48)
T 2ent_A            3 SGSSGTG----EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP   45 (48)
T ss_dssp             CCCSSCC----CCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSS
T ss_pred             CCCCcCC----CCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3456666    9999998  899999999999999999999998864

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.67  E-value=1.1e-08  Score=63.06  Aligned_cols=46  Identities=22%  Similarity=0.460  Sum_probs=42.8

Q ss_pred             CCCcCCCCchHHHHhhhhcCCCCCCccccccc--cCcccCCchhHhhhcccc
Q 044394           19 QNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK--CNGAFGTSQAFAAHMRSH   68 (140)
Q Consensus        19 ~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~--Cgk~F~~~~~L~~H~r~H   68 (140)
                      |...|.....|..|+++|++    ++||.|..  |++.|.....|..|+++|
T Consensus        25 C~k~f~~~~~L~~H~~~H~~----~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           25 CGKTYFKSSHLKAHTRTHTG----EKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             TCCEESSHHHHHHHHHHHSS----SCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCCHHHHHHHHHhcCC----CCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            78889999999999999999    99999965  999999999999999876

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.67  E-value=8.9e-09  Score=65.27  Aligned_cols=35  Identities=29%  Similarity=0.528  Sum_probs=31.2

Q ss_pred             CCCccccccc--cCcccCCchhHhhhc-ccccCCCChH
Q 044394           41 KKYGPYKCPK--CNGAFGTSQAFAAHM-RSHYKYETSA   75 (140)
Q Consensus        41 ~~ekP~~C~~--Cgk~F~~~~~L~~H~-r~Ht~ekp~~   75 (140)
                      ++++||.|..  |+++|.+.++|..|+ ++|++++|+-
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~   60 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAF   60 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcc
Confidence            3499999975  999999999999997 6899999874

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=8.8e-09  Score=54.95  Aligned_cols=33  Identities=30%  Similarity=0.573  Sum_probs=29.7

Q ss_pred             CCCCccccccccCcccCCchhHhhhcccccCCC
Q 044394           40 CKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        40 h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      |++++||.|..|++.|.....|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            344999999999999999999999999999864

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=8.8e-09  Score=57.43  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=29.2

Q ss_pred             CCCCccccccc--cCcccCCchhHhhhcccccCC
Q 044394           40 CKKYGPYKCPK--CNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        40 h~~ekP~~C~~--Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      +++++||.|..  |+++|.+.+.|..|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            45599999986  999999999999999999986

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.65  E-value=7.6e-09  Score=56.05  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=31.3

Q ss_pred             CCCcccccc--ccCcccCCchhHhhhcccccCCCCh
Q 044394           41 KKYGPYKCP--KCNGAFGTSQAFAAHMRSHYKYETS   74 (140)
Q Consensus        41 ~~ekP~~C~--~Cgk~F~~~~~L~~H~r~Ht~ekp~   74 (140)
                      ++++||.|.  .|++.|.+...|..|+++|++++||
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            449999999  5999999999999999999999876

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=2e-09  Score=72.13  Aligned_cols=73  Identities=1%  Similarity=-0.229  Sum_probs=55.5

Q ss_pred             ccccCCCCCCCCC-CCCCCcCCCCchHHHHhhh--hcCCCCCCcccc-ccccCccc--CCchhHhhhcccccCCCChHHH
Q 044394            4 THVQDKNPGKNPN-NVQNPNRKENQDVEYDGRI--HSHPCKKYGPYK-CPKCNGAF--GTSQAFAAHMRSHYKYETSAER   77 (140)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~--Htg~h~~ekP~~-C~~Cgk~F--~~~~~L~~H~r~Ht~ekp~~~~   77 (140)
                      .|+..+.+.+... .+|+..|.....|..|+++  |.+    ++++. |..|++.|  .....|..|+++|++++||.|.
T Consensus         9 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~----~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~   84 (115)
T 2dmi_A            9 LYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYR----DDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCM   84 (115)
T ss_dssp             CCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCB----CSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCS
T ss_pred             hheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccc----cCCCccCCCCCcccccccHHHHHHHhhccCCCcceECC
Confidence            3444444433332 4668889999999999998  665    77655 99999998  8999999999999999999764


Q ss_pred             HHH
Q 044394           78 KRR   80 (140)
Q Consensus        78 ~~~   80 (140)
                      .+.
T Consensus        85 ~C~   87 (115)
T 2dmi_A           85 YCG   87 (115)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            433

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=98.64  E-value=1.6e-09  Score=69.06  Aligned_cols=61  Identities=25%  Similarity=0.441  Sum_probs=50.7

Q ss_pred             cccCCCCCCCCCC---CCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhccccc
Q 044394            5 HVQDKNPGKNPNN---VQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus         5 ~~~~~~~~~~~~~---~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      |++.+...+...+   +|+..|.....|..|+++|++    ++||.|+.|++.|.....|..|+++|+
T Consensus        26 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           26 HLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG----HRPFQCQKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             HHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHC----CCCEECSSSSCEESSHHHHHHHGGGGC
T ss_pred             HHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCC----CCCccCCCCCcccCCHHHHHHHHHhhC
Confidence            3344444333344   588999999999999999999    999999999999999999999999884

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=7.6e-09  Score=55.72  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             hhhcCCCCCCccccccccCcccCCc-hhHhhhcccccCCC
Q 044394           34 RIHSHPCKKYGPYKCPKCNGAFGTS-QAFAAHMRSHYKYE   72 (140)
Q Consensus        34 r~Htg~h~~ekP~~C~~Cgk~F~~~-~~L~~H~r~Ht~ek   72 (140)
                      ++|++    ++||.|+.|++.|.+. ..|..|+++|++++
T Consensus         2 ~~h~~----~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSS----GRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCC----CCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCC----CCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            34566    9999999999999999 99999999998864

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.63  E-value=1e-08  Score=54.35  Aligned_cols=31  Identities=23%  Similarity=0.477  Sum_probs=29.4

Q ss_pred             ccccccccCcccCCchhHhhhcccccCCCCh
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHYKYETS   74 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~   74 (140)
                      +||.|..|++.|.....|..|+++|++++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            5899999999999999999999999999886

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.5e-08  Score=54.01  Aligned_cols=33  Identities=15%  Similarity=0.193  Sum_probs=29.8

Q ss_pred             CCCCccccccccCcccCCchhHhhhcccccCCC
Q 044394           40 CKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        40 h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      |++++||.|..|++.|.+...|..|+++|++++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            344999999999999999999999999999864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1.2e-08  Score=54.53  Aligned_cols=32  Identities=22%  Similarity=0.220  Sum_probs=29.2

Q ss_pred             CCCccccccccCcccCCchhHhhhcccccCCC
Q 044394           41 KKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        41 ~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      ++++||.|..|++.|.+...|..|+++|++++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            5 SSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            33999999999999999999999999999864

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.61  E-value=9.6e-09  Score=68.06  Aligned_cols=55  Identities=13%  Similarity=0.122  Sum_probs=49.7

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcc-cccCCCChH
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMR-SHYKYETSA   75 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r-~Ht~ekp~~   75 (140)
                      +.+|...|.....|..|++ |++    ++||.|..|++.|.+...|..|++ +|+++++|.
T Consensus        45 C~~C~~~f~~~~~l~~H~~-H~~----~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~  100 (107)
T 1wjp_A           45 CPYCSLRFFSPELKQEHES-KCE----YKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAP  100 (107)
T ss_dssp             CTTTCCCBSSHHHHHHHHH-HCS----TGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCccCCHHHHHHHHH-cCC----CCCccCccccchhCCHHHHHHHHHHHcCCCCCCC
Confidence            3567889999999999995 999    999999999999999999999997 999988764

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=5.6e-10  Score=73.63  Aligned_cols=55  Identities=22%  Similarity=0.203  Sum_probs=46.9

Q ss_pred             cCCCCchHHHHhhhhcCCCCCCccccccccCcccC-CchhHhhhcccccC-CCChHHHHHH
Q 044394           22 NRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFG-TSQAFAAHMRSHYK-YETSAERKRR   80 (140)
Q Consensus        22 ~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~-~~~~L~~H~r~Ht~-ekp~~~~~~~   80 (140)
                      ++.....+..|+++|++    ++||.|..|++.|. ....|..|+++|++ +++|.|..+.
T Consensus         5 s~~~~~~~~~h~~~h~~----~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~   61 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHE----RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCR   61 (98)
T ss_dssp             CCCCCCSCSHHHHTTTT----TSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSC
T ss_pred             CCCCCCcHHHHHHHhcc----CCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCC
Confidence            34455667889999999    99999999999999 99999999999998 8888764443

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.60  E-value=1.2e-08  Score=58.35  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=33.1

Q ss_pred             CCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           40 CKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        40 h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |++++||.|..|++.|.+...|..|+++|++++||.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSS   43 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCS
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccC
Confidence            3448999999999999999999999999999998865

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=8.9e-09  Score=55.78  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=30.5

Q ss_pred             hhhcCCCCCCccccccccCcccCCchhHhhh-cccccCC
Q 044394           34 RIHSHPCKKYGPYKCPKCNGAFGTSQAFAAH-MRSHYKY   71 (140)
Q Consensus        34 r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H-~r~Ht~e   71 (140)
                      ++|++    ++||.|..|++.|.+...|..| +++|+++
T Consensus         2 ~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSS----GHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSS----SCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCC----CcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            45666    9999999999999999999999 8999874

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=1.5e-08  Score=54.24  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=29.6

Q ss_pred             CCCCccccccccCcccCCchhHhhhcccccCCC
Q 044394           40 CKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        40 h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      |++++||.|..|++.|.+...|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            344999999999999999999999999998864

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.58  E-value=7e-09  Score=54.50  Aligned_cols=31  Identities=23%  Similarity=0.544  Sum_probs=29.3

Q ss_pred             ccccccccCcccCCchhHhhhcccccCCCCh
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHYKYETS   74 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~   74 (140)
                      +||.|..|++.|.+.+.|..|+++|++++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            5899999999999999999999999999875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=1.9e-08  Score=53.76  Aligned_cols=32  Identities=25%  Similarity=0.483  Sum_probs=29.3

Q ss_pred             CCCccccccccCcccCCchhHhhhcccccCCC
Q 044394           41 KKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        41 ~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      ++++||.|..|++.|.....|..|+++|++++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             SCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            34999999999999999999999999999864

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.57  E-value=4.9e-08  Score=60.95  Aligned_cols=66  Identities=12%  Similarity=0.274  Sum_probs=49.0

Q ss_pred             ccccCCCCCCCCC-CCCCCcCCCCchHHHHhh-hhcCCCCCC-ccccccccCcccCCchhHhhhccc-ccCCCC
Q 044394            4 THVQDKNPGKNPN-NVQNPNRKENQDVEYDGR-IHSHPCKKY-GPYKCPKCNGAFGTSQAFAAHMRS-HYKYET   73 (140)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r-~Htg~h~~e-kP~~C~~Cgk~F~~~~~L~~H~r~-Ht~ekp   73 (140)
                      .|...|...+... .+|...|.....|..|++ .|++    + +||.|+.|++.|.....|..|++. |..+.|
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~----~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTE----NVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS----SCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCC----CCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            4555555444333 456888889999999986 6776    5 799999999999999999999876 454444

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.55  E-value=4.4e-08  Score=63.06  Aligned_cols=53  Identities=23%  Similarity=0.419  Sum_probs=47.4

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCC--ccccccccCcccCCchhHhhhcc-cccCCC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKY--GPYKCPKCNGAFGTSQAFAAHMR-SHYKYE   72 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~e--kP~~C~~Cgk~F~~~~~L~~H~r-~Ht~ek   72 (140)
                      +.+|...|.....|..|+++|.+    +  +||.|..|++.|.....|..|++ .|.++.
T Consensus        38 C~~C~~~f~~~~~l~~H~~~h~~----~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           38 CPVCGLRFKRKDRMSYHVRSHDG----SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS   93 (95)
T ss_dssp             CSSSCCEESCHHHHHHHHHHHCC----CCCSSBCCSSSCCCBSSHHHHHHHHHHTSCCCS
T ss_pred             CCCCCCccCCHHHHHHHHHHhcC----CCCCceECCCccchhCCHHHHHHHHHHhcCCCC
Confidence            35678899999999999999998    7  89999999999999999999985 788753

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.55  E-value=4.1e-08  Score=65.87  Aligned_cols=60  Identities=12%  Similarity=0.083  Sum_probs=51.2

Q ss_pred             CCCCCcCCCCchHHHHhhh---hcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHHH
Q 044394           17 NVQNPNRKENQDVEYDGRI---HSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRR   80 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~---Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~   80 (140)
                      .+|...|.....|..|++.   |.+    +++|.|+.|++.|.....|..|+++|++++||.|..+.
T Consensus        39 ~~C~~~f~~~~~l~~H~~~~~~~~~----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  101 (124)
T 2dlq_A           39 PKCGKCYFRKENLLEHEARNCMNRS----EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCS  101 (124)
T ss_dssp             TTTCCBCSSHHHHHHHHHHCCCCSC----CCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSC
T ss_pred             CCCCchhcCHHHHHHHHhhhhcCCC----CCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCcc
Confidence            4568889999999999986   455    89999999999999999999999999999999765443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=98.54  E-value=2.1e-08  Score=62.95  Aligned_cols=50  Identities=20%  Similarity=0.418  Sum_probs=47.2

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccc--cCcccCCchhHhhhcccccC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK--CNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~--Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      .+|+..|.....|..|+++|++    ++||.|+.  |++.|.....|..|+++|++
T Consensus         7 ~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            7 ENCGKAFKKHNQLKVHQFSHTQ----QLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             TTCCCEESSHHHHHHHHHHHHT----TCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             CCCCcccCCHHHHHHHHHHhCC----CCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            5678999999999999999999    99999988  99999999999999999988

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.52  E-value=2.5e-08  Score=57.37  Aligned_cols=34  Identities=24%  Similarity=0.486  Sum_probs=28.8

Q ss_pred             CCCCccccccccCcccCCchhHhhhcc-cccCCCC
Q 044394           40 CKKYGPYKCPKCNGAFGTSQAFAAHMR-SHYKYET   73 (140)
Q Consensus        40 h~~ekP~~C~~Cgk~F~~~~~L~~H~r-~Ht~ekp   73 (140)
                      |++++||.|..|++.|.+...|..|++ +|+++.+
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            444999999999999999999999999 9998764

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.52  E-value=7.1e-09  Score=69.67  Aligned_cols=59  Identities=14%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhccc---ccCCCChHHHHH
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRS---HYKYETSAERKR   79 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~---Ht~ekp~~~~~~   79 (140)
                      .+|+..|.....|..|+++|.+    ++||.|+.|++.|.....|..|+..   |.+++++.|..+
T Consensus        11 ~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C   72 (124)
T 2dlq_A           11 PTCHKKFLSKYYLKVHNRKHTG----EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVC   72 (124)
T ss_dssp             TTTCCCCSSHHHHHHHHHHHSS----CCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSS
T ss_pred             CCCCCcCCCHHHHHHHHHhCCC----CCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCC
Confidence            4568889999999999999999    9999999999999999999999874   678888876443

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=98.52  E-value=4e-08  Score=65.58  Aligned_cols=55  Identities=18%  Similarity=0.353  Sum_probs=52.7

Q ss_pred             CCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHH
Q 044394           18 VQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        18 ~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .|+..|.....|..|+++|++    ++||.|..|++.|.....|..|+++|+++++|.+
T Consensus        43 ~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (119)
T 2jp9_A           43 DCERRFSRSDQLKRHQRRHTG----VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC   97 (119)
T ss_dssp             TCCCEESSHHHHHHHHHHHHC----CCCEECTTTCCEESCHHHHHHHHHHHHTCCCEEC
T ss_pred             CCcCccCCHHHHHHHHHHcCC----CCCccCCccCchhCCHHHHHHHHHHhcCCCCeeC
Confidence            588999999999999999999    9999999999999999999999999999999877

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.49  E-value=1.3e-09  Score=68.30  Aligned_cols=48  Identities=25%  Similarity=0.385  Sum_probs=40.7

Q ss_pred             HHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcc-cccCC-CChHHHHHH
Q 044394           29 VEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMR-SHYKY-ETSAERKRR   80 (140)
Q Consensus        29 L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r-~Ht~e-kp~~~~~~~   80 (140)
                      |.+|+++|++    ++||.|..|++.|.....|..|++ .|.++ ++|.|..+.
T Consensus         3 ~~~H~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~   52 (77)
T 2ct1_A            3 SGSSGRTHSG----EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCD   52 (77)
T ss_dssp             CCCCCCCCSC----CCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSS
T ss_pred             CCccccccCC----CCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCC
Confidence            5678888888    999999999999999999999997 78875 788764433

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=98.48  E-value=7e-08  Score=69.82  Aligned_cols=57  Identities=14%  Similarity=0.200  Sum_probs=43.4

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccc--cccCcccCCchhHhhhcccccCCCChHHH
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKC--PKCNGAFGTSQAFAAHMRSHYKYETSAER   77 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C--~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~   77 (140)
                      ..|+..|.....|..|+++|++    ++||.|  ..|++.|.....|..|+++|.+++++.+.
T Consensus        18 ~~C~~~f~~~~~L~~H~~~h~~----~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   76 (190)
T 1tf6_A           18 ADCGAAYNKNWKLQAHLCKHTG----EKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD   76 (190)
T ss_dssp             TTTCCBCSSHHHHHHHHHHHHC----CCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECC
T ss_pred             CCCcchhCCHHHHHHHHHhcCC----CCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCC
Confidence            4567777777778888887777    778888  67888888888888888778777777553

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.45  E-value=8.1e-08  Score=63.60  Aligned_cols=51  Identities=25%  Similarity=0.367  Sum_probs=46.5

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      +.+|...|.....|..|+++|.+    ++||.|..|++.|.....|..|++.|..
T Consensus        40 C~~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           40 CGVCGKKFKMKHHLVGHMKIHTG----IKPYECNICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             CTTTSCEESSSHHHHHHHTTTCC----CCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             CCCCCcccCCHHHHHHHHHHcCC----CCCeeCCCCcchhcCHHHHHHHHHHccc
Confidence            35678999999999999999999    9999999999999999999999987754

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=4.5e-08  Score=65.35  Aligned_cols=51  Identities=18%  Similarity=0.224  Sum_probs=44.8

Q ss_pred             CCCCCcC--CCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCC
Q 044394           17 NVQNPNR--KENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        17 ~~~~~~~--~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      .+|...|  .....|..|+++|++    ++||.|..|++.|.....|..|++.|...
T Consensus        54 ~~C~~~f~f~~~~~l~~H~~~H~~----~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           54 NNNPKRWSKPRKRSLLEMEGKEDA----QKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CCCCSCCSSCCCCCCCCCCCSCCC----CSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             CCCCcccccccHHHHHHHhhccCC----CcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            4556666  888899999999999    99999999999999999999999887654

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.45  E-value=2.1e-08  Score=57.36  Aligned_cols=39  Identities=13%  Similarity=0.243  Sum_probs=33.5

Q ss_pred             HHHhhhhcCCCCCCcccccc--ccCcccCCchhHhhhcccccCCC
Q 044394           30 EYDGRIHSHPCKKYGPYKCP--KCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        30 ~~H~r~Htg~h~~ekP~~C~--~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      ..|...|++    ++||.|.  .|++.|.+.+.|..|+++|++++
T Consensus         7 ~~~~~~H~~----~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            7 IDKYVKEMP----DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCEEET----TTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHhccCC----CCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            344556888    9999995  79999999999999999999864

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.45  E-value=4.9e-08  Score=52.73  Aligned_cols=32  Identities=25%  Similarity=0.438  Sum_probs=28.8

Q ss_pred             CCCcccccc--ccCcccCCchhHhhhcccccCCC
Q 044394           41 KKYGPYKCP--KCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        41 ~~ekP~~C~--~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      ++++||.|.  .|++.|.+.+.|..|+++|++++
T Consensus         4 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            349999998  49999999999999999999864

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=98.45  E-value=1.3e-07  Score=68.39  Aligned_cols=69  Identities=17%  Similarity=0.209  Sum_probs=49.8

Q ss_pred             CCCCcCCCCchHHHHh-hhh-cCCCCCCccccc--cccCcccCCchhHhhhcccccCCCChHH----HHHHHHHHHhhhh
Q 044394           18 VQNPNRKENQDVEYDG-RIH-SHPCKKYGPYKC--PKCNGAFGTSQAFAAHMRSHYKYETSAE----RKRRLSARLKKRN   89 (140)
Q Consensus        18 ~~~~~~~k~s~L~~H~-r~H-tg~h~~ekP~~C--~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~----~~~~~~~~~~~~~   89 (140)
                      +|+..|.....|..|+ +.| .+    +++|.|  ..|++.|.....|..|+++|++++||.+    +.+.|......+.
T Consensus        79 ~C~~~f~~~~~l~~H~~~~h~~~----~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~  154 (190)
T 1tf6_A           79 GCDLRFTTKANMKKHFNRFHNIK----ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKR  154 (190)
T ss_dssp             SCCCEESCHHHHHHHHHTTSSTT----TSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHH
T ss_pred             CCCCccCCHHHHHHHHHHhcCCC----cceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHH
Confidence            5778888888888887 666 35    778888  7788888888888888888888888876    4444444333333


Q ss_pred             c
Q 044394           90 L   90 (140)
Q Consensus        90 ~   90 (140)
                      +
T Consensus       155 H  155 (190)
T 1tf6_A          155 H  155 (190)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.45  E-value=2.6e-09  Score=66.20  Aligned_cols=43  Identities=30%  Similarity=0.445  Sum_probs=37.9

Q ss_pred             hhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHH
Q 044394           33 GRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKR   79 (140)
Q Consensus        33 ~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~   79 (140)
                      .++|++    ++||.|..|++.|.....|..|+++|++++||.|..+
T Consensus         6 ~~~H~~----~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C   48 (72)
T 1x6e_A            6 SGIHSG----EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC   48 (72)
T ss_dssp             CCTTTT----CCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSS
T ss_pred             CcccCC----CCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCC
Confidence            456666    9999999999999999999999999999999976543

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.44  E-value=6e-09  Score=64.08  Aligned_cols=41  Identities=20%  Similarity=0.224  Sum_probs=35.9

Q ss_pred             CCCCccccccccCcccCCchhHhhhcccccCCCChHHHHHH
Q 044394           40 CKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRR   80 (140)
Q Consensus        40 h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~   80 (140)
                      |++++||.|..|++.|.....|..|+++|+++++|.|..+.
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~   44 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCS   44 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCC
Confidence            34499999999999999999999999999999999765433

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.42  E-value=6.2e-08  Score=56.83  Aligned_cols=35  Identities=20%  Similarity=0.455  Sum_probs=23.7

Q ss_pred             CCccccccccCcccCCchhHhhhcc-cccCCCChHH
Q 044394           42 KYGPYKCPKCNGAFGTSQAFAAHMR-SHYKYETSAE   76 (140)
Q Consensus        42 ~ekP~~C~~Cgk~F~~~~~L~~H~r-~Ht~ekp~~~   76 (140)
                      +++||.|..|++.|.....|..|++ +|++++||.+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C   44 (54)
T 2eps_A            9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC   44 (54)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCS
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccC
Confidence            3667777777777777777777765 6777666654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.42  E-value=3.9e-09  Score=66.83  Aligned_cols=48  Identities=23%  Similarity=0.407  Sum_probs=40.2

Q ss_pred             hHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCC----CChHHHHH
Q 044394           28 DVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKY----ETSAERKR   79 (140)
Q Consensus        28 ~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~e----kp~~~~~~   79 (140)
                      +|..|+++|++    ++||.|..|++.|.....|..|++.|...    ++|.|..+
T Consensus         2 s~~~H~~~H~~----~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C   53 (86)
T 1x6h_A            2 SSGSSGRTHTG----EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKC   53 (86)
T ss_dssp             TTTCCSTTCCC----CCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSS
T ss_pred             CcccccceecC----CCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCC
Confidence            46678999998    99999999999999999999999876654    67765443

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.41  E-value=1.4e-07  Score=64.32  Aligned_cols=47  Identities=19%  Similarity=0.246  Sum_probs=29.6

Q ss_pred             CCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHH
Q 044394           24 KENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAER   77 (140)
Q Consensus        24 ~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~   77 (140)
                      .....|..|+ .|++    ++||.|..|++.|.....|..|+++|  ++||.|.
T Consensus        58 ~~~~~l~~h~-~h~~----~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~  104 (129)
T 2wbt_A           58 DESSYLYRLL-ASKA----ISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCP  104 (129)
T ss_dssp             TTHHHHHHHH-HHHH----HCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCT
T ss_pred             CCHHHHHHHH-HhCC----CCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCC
Confidence            3444555555 4666    67777777777777777777777666  5666543

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.40  E-value=6.3e-08  Score=67.57  Aligned_cols=55  Identities=22%  Similarity=0.327  Sum_probs=52.2

Q ss_pred             CCCCcCCCCchHHHHhhhhcCCCCCCccccccc--cCcccCCchhHhhhc-ccccCCCChHH
Q 044394           18 VQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK--CNGAFGTSQAFAAHM-RSHYKYETSAE   76 (140)
Q Consensus        18 ~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~--Cgk~F~~~~~L~~H~-r~Ht~ekp~~~   76 (140)
                      .|+..|.....|..|+++|++    ++||.|+.  |++.|.....|..|+ +.|+++++|.+
T Consensus        74 ~C~~~f~~~~~l~~H~~~h~~----~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  131 (155)
T 2gli_A           74 GCRKSYSRLENLKTHLRSHTG----EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC  131 (155)
T ss_dssp             TCCCCCSSHHHHHHHHHHTTT----CCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEEC
T ss_pred             CCCCcccCHHHHHHHHHHcCC----CCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeC
Confidence            489999999999999999999    99999998  999999999999998 89999999987

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.40  E-value=1.2e-07  Score=47.76  Aligned_cols=29  Identities=24%  Similarity=0.503  Sum_probs=26.9

Q ss_pred             ccccccccCcccCCchhHhhhcccccCCC
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999999864

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.39  E-value=9.8e-08  Score=48.18  Aligned_cols=30  Identities=23%  Similarity=0.589  Sum_probs=27.6

Q ss_pred             CccccccccCcccCCchhHhhhcccccCCC
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      ++||.|..|++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            479999999999999999999999998864

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.39  E-value=1e-08  Score=67.07  Aligned_cols=42  Identities=12%  Similarity=0.370  Sum_probs=36.5

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHH
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAER   77 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~   77 (140)
                      +.++|++    ++||.|..|++.|.+...|..|+++|++++||.|.
T Consensus        16 ~~~~H~~----~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~   57 (88)
T 1x6f_A           16 GNGPRLQ----NSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAK   57 (88)
T ss_dssp             CCCSCCC----CSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccCC----CCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccc
Confidence            3445666    99999999999999999999999999999888763

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=1.5e-08  Score=63.46  Aligned_cols=41  Identities=12%  Similarity=0.075  Sum_probs=35.4

Q ss_pred             CCCCccccccccCcccCCchhHhhhcccccC---CCChHHHHHH
Q 044394           40 CKKYGPYKCPKCNGAFGTSQAFAAHMRSHYK---YETSAERKRR   80 (140)
Q Consensus        40 h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~---ekp~~~~~~~   80 (140)
                      |++++||.|..|++.|.....|..|+++|++   +++|.|..+.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~   45 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCG   45 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCC
Confidence            4459999999999999999999999999986   8898765443

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.38  E-value=1.2e-08  Score=61.91  Aligned_cols=44  Identities=23%  Similarity=0.255  Sum_probs=34.8

Q ss_pred             HHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHH
Q 044394           29 VEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKR   79 (140)
Q Consensus        29 L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~   79 (140)
                      |..|+++|++    ++||.|+.|++.|.+...|.   ++|++++||.|..+
T Consensus         2 L~~h~~~H~~----~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C   45 (62)
T 1vd4_A            2 IETDERDSTN----RASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFC   45 (62)
T ss_dssp             CCCCSSSCCS----SSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSS
T ss_pred             hhhHHHHcCC----CCCccCCCCCchhccHHHhH---hhcCCCCCEECCCC
Confidence            3456777777    99999999999999888886   78899888765443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.36  E-value=2.3e-07  Score=47.95  Aligned_cols=30  Identities=30%  Similarity=0.614  Sum_probs=27.5

Q ss_pred             Ccccccc--ccCcccCCchhHhhhcccccCCC
Q 044394           43 YGPYKCP--KCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        43 ekP~~C~--~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      ++||.|.  .|++.|.+...|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4799999  89999999999999999999864

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.33  E-value=2e-07  Score=51.30  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=24.6

Q ss_pred             CCCCccccccccCcccCCchhHhhhcc
Q 044394           40 CKKYGPYKCPKCNGAFGTSQAFAAHMR   66 (140)
Q Consensus        40 h~~ekP~~C~~Cgk~F~~~~~L~~H~r   66 (140)
                      +++++||.|..|+++|.+.++|..|+.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCC
Confidence            456999999999999999999999983

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.33  E-value=1.8e-07  Score=46.97  Aligned_cols=29  Identities=28%  Similarity=0.587  Sum_probs=26.7

Q ss_pred             ccccccccCcccCCchhHhhhcccccCCC
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999998864

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.32  E-value=1.9e-07  Score=58.11  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=30.1

Q ss_pred             CCCCccccccccCcccCCchhHhhhcccccCCC
Q 044394           40 CKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        40 h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      +.+++||.|..|++.|.+...|..|+++|+++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            444999999999999999999999999999964

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.32  E-value=2.4e-07  Score=46.65  Aligned_cols=30  Identities=20%  Similarity=0.433  Sum_probs=27.4

Q ss_pred             ccccccccCcccCCchhHhhhcccccCCCC
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHYKYET   73 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp   73 (140)
                      +||.|..|++.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            589999999999999999999999998763

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.32  E-value=1.7e-07  Score=46.90  Aligned_cols=29  Identities=28%  Similarity=0.591  Sum_probs=26.7

Q ss_pred             ccccccccCcccCCchhHhhhcccccCCC
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      +||.|..|++.|.+...|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            58999999999999999999999998864

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.65  E-value=7.3e-08  Score=48.87  Aligned_cols=30  Identities=30%  Similarity=0.616  Sum_probs=27.3

Q ss_pred             CccccccccCcccCCchhHhhhcccccCCC
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      ++||.|..|++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            479999999999999999999999998753

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.30  E-value=2.8e-07  Score=47.40  Aligned_cols=29  Identities=28%  Similarity=0.602  Sum_probs=26.7

Q ss_pred             cccccc--ccCcccCCchhHhhhcccccCCC
Q 044394           44 GPYKCP--KCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        44 kP~~C~--~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      +||.|.  .|++.|.....|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            589998  89999999999999999999864

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.30  E-value=2.5e-08  Score=68.05  Aligned_cols=50  Identities=12%  Similarity=0.137  Sum_probs=45.3

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      +.+|...|.....|..|+++|      ++||.|..|++.|.+...|..|++.|++.
T Consensus        77 C~~C~k~f~~~~~l~~H~~~H------~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           77 CPLCLMPFSSSVSLKQHIRYT------EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             CTTTCCEESSHHHHHHHHHHT------CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCCCcccCCHhHHHHHHHHC------CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            356789999999999999998      37999999999999999999999999874

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.63  E-value=8.4e-08  Score=48.51  Aligned_cols=29  Identities=31%  Similarity=0.631  Sum_probs=26.6

Q ss_pred             ccccccccCcccCCchhHhhhcccccCCC
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            58999999999999999999999998863

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.29  E-value=1.5e-07  Score=47.14  Aligned_cols=29  Identities=38%  Similarity=0.728  Sum_probs=26.8

Q ss_pred             ccccccccCcccCCchhHhhhcccccCCC
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            58999999999999999999999998864

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.28  E-value=2.9e-08  Score=61.56  Aligned_cols=39  Identities=23%  Similarity=0.386  Sum_probs=35.1

Q ss_pred             CCccccccccCcccCCchhHhhhcccccCCCChHHHHHH
Q 044394           42 KYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRR   80 (140)
Q Consensus        42 ~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~   80 (140)
                      +++||.|..|++.|.....|..|++.|+++++|.|..+.
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~   52 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICG   52 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTC
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCC
Confidence            399999999999999999999999999999999765443

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.28  E-value=2.6e-07  Score=46.22  Aligned_cols=28  Identities=29%  Similarity=0.674  Sum_probs=25.8

Q ss_pred             CccccccccCcccCCchhHhhhcccccC
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      ++||.|..|++.|.....|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4799999999999999999999998875

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.27  E-value=1.2e-08  Score=61.75  Aligned_cols=42  Identities=14%  Similarity=0.247  Sum_probs=36.5

Q ss_pred             hhhcCCCCCCccccccccCcccCCchhHhhhccc-c-cCCCChHHHHH
Q 044394           34 RIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRS-H-YKYETSAERKR   79 (140)
Q Consensus        34 r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~-H-t~ekp~~~~~~   79 (140)
                      ++|++    ++||.|+.|++.|.....|..|++. | ++++||.|..+
T Consensus         3 ~~h~~----~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C   46 (66)
T 2drp_A            3 FTKEG----EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFC   46 (66)
T ss_dssp             CEEEE----TTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTT
T ss_pred             cccCC----CcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCC
Confidence            46777    9999999999999999999999988 7 68999876543

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.27  E-value=4.4e-07  Score=45.89  Aligned_cols=29  Identities=28%  Similarity=0.479  Sum_probs=26.5

Q ss_pred             ccccccccCcccCCchhHhhh-cccccCCC
Q 044394           44 GPYKCPKCNGAFGTSQAFAAH-MRSHYKYE   72 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H-~r~Ht~ek   72 (140)
                      +||.|..|++.|.+...|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            589999999999999999999 78998864

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.26  E-value=4.9e-07  Score=52.88  Aligned_cols=37  Identities=11%  Similarity=0.121  Sum_probs=33.7

Q ss_pred             CCCCCcCCCCchHHHHhh-hhcCCCCCCccccccccCcccCC
Q 044394           17 NVQNPNRKENQDVEYDGR-IHSHPCKKYGPYKCPKCNGAFGT   57 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r-~Htg~h~~ekP~~C~~Cgk~F~~   57 (140)
                      .+|...|.....|..|++ +|++    ++||.|..|++.|.+
T Consensus        16 ~~C~k~f~~~~~L~~H~~~~H~~----~k~~~C~~C~k~F~~   53 (54)
T 2eps_A           16 QSCGKGFSRPDHLNGHIKQVHTS----ERPHKCQVWVSGPSS   53 (54)
T ss_dssp             SSSCCEESSHHHHHHHHHHTSCC----CCCCCSSSSCCSSCC
T ss_pred             CCCCcccCCHHHHHHHHHHhcCC----CCCccCCCCCCCCCC
Confidence            457889999999999997 8999    999999999999976

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.25  E-value=7.1e-08  Score=60.20  Aligned_cols=38  Identities=24%  Similarity=0.419  Sum_probs=34.7

Q ss_pred             CccccccccCcccCCchhHhhhcccccCCCChHHHHHH
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRR   80 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~   80 (140)
                      ++||.|..|++.|.....|..|+++|+++++|.|..+.
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   53 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECG   53 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSC
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCC
Confidence            89999999999999999999999999999999765443

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.25  E-value=1.3e-07  Score=55.29  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=30.7

Q ss_pred             CCccccccccCcccCCchhHhhhcccccCCCChHHHH
Q 044394           42 KYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERK   78 (140)
Q Consensus        42 ~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~   78 (140)
                      |++||.|..|++.|.....|..|+++|++++||.|..
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   37 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEF   37 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSS
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCC
Confidence            3789999999999999999999999999999987644

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.25  E-value=2.5e-07  Score=46.29  Aligned_cols=27  Identities=37%  Similarity=0.832  Sum_probs=24.9

Q ss_pred             CccccccccCcccCCchhHhhhccccc
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      ++||.|..|++.|.+...|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            479999999999999999999998874

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.24  E-value=2.9e-07  Score=45.79  Aligned_cols=27  Identities=26%  Similarity=0.527  Sum_probs=24.9

Q ss_pred             CccccccccCcccCCchhHhhhccccc
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            479999999999999999999998875

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.23  E-value=5.1e-07  Score=44.61  Aligned_cols=27  Identities=33%  Similarity=0.676  Sum_probs=23.9

Q ss_pred             cccccccCcccCCchhHhhhcccccCC
Q 044394           45 PYKCPKCNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      ||.|..|++.|.+...|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            689999999999999999999999874

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.22  E-value=2.1e-07  Score=60.58  Aligned_cols=38  Identities=18%  Similarity=0.220  Sum_probs=34.7

Q ss_pred             CccccccccCcccCCchhHhhhcccccCCCChHHHHHH
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRR   80 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~   80 (140)
                      .++|.|+.|++.|.+...|..|+++|++++||.|..+.
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~   63 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCP   63 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSS
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCC
Confidence            88999999999999999999999999999999865443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.11  E-value=1.6e-07  Score=55.58  Aligned_cols=37  Identities=22%  Similarity=0.375  Sum_probs=33.1

Q ss_pred             ccccccccCcccCCchhHhhhcccccCCCChHHHHHH
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRR   80 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~   80 (140)
                      +||.|..|++.|.....|..|++.|++++||.|..+.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   37 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCN   37 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCC
Confidence            5899999999999999999999999999998765443

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.09  E-value=1.4e-07  Score=57.56  Aligned_cols=32  Identities=19%  Similarity=0.189  Sum_probs=17.4

Q ss_pred             ccccccccCcccCCchhHhhhcccccCCCChH
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHYKYETSA   75 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~   75 (140)
                      +||.|..|++.|.....|..|+++|++++||.
T Consensus        38 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~   69 (73)
T 2ctu_A           38 KTPMCEKCRKDSCQEAALNKDEGNESGKKTSG   69 (73)
T ss_dssp             SSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSS
T ss_pred             CCCCCCCCChhhcCHHHHHHHHHhhcCCCCCC
Confidence            45555555555555555555555555555543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.09  E-value=6e-07  Score=55.76  Aligned_cols=34  Identities=15%  Similarity=0.194  Sum_probs=32.3

Q ss_pred             CCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccC
Q 044394           19 QNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFG   56 (140)
Q Consensus        19 ~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~   56 (140)
                      |...|.....|..|+++|++    ++||.|..|++.|.
T Consensus        46 C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           46 CGKSFNFKKHLKEHMKLHSD----TRDYICEFSGPSSG   79 (79)
T ss_dssp             TCCEESSHHHHHHHHHHHHT----SCCCSCCSSSCCCC
T ss_pred             CcCccCCHHHHHHHHHHhCC----CCCeeCCCCCCCCC
Confidence            88999999999999999999    99999999999984

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.37  E-value=4.2e-07  Score=44.79  Aligned_cols=26  Identities=38%  Similarity=0.804  Sum_probs=24.0

Q ss_pred             ccccccccCcccCCchhHhhhccccc
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      +||.|..|++.|.+...|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999998874

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.05  E-value=1.5e-07  Score=55.03  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=31.8

Q ss_pred             cccccccCcccCCchhHhhhcccccCCCChHHHHH
Q 044394           45 PYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKR   79 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~   79 (140)
                      ||.|..|++.|.....|..|+++|++++||.|..+
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   35 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYC   35 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCC
Confidence            79999999999999999999999999999876443

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.03  E-value=2.7e-07  Score=61.95  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=34.4

Q ss_pred             CCCccccccccCcccCCchhHhhhcc-cc---cCCCChHHHHHHH
Q 044394           41 KKYGPYKCPKCNGAFGTSQAFAAHMR-SH---YKYETSAERKRRL   81 (140)
Q Consensus        41 ~~ekP~~C~~Cgk~F~~~~~L~~H~r-~H---t~ekp~~~~~~~~   81 (140)
                      +|++||.|..|++.|.+...|..|++ +|   ++++||.|..+..
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk   58 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNF   58 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTE
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCc
Confidence            34999999999999999999999997 59   6689997654443

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.00  E-value=2.4e-06  Score=48.49  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=30.3

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNG   53 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk   53 (140)
                      .+|...|.....|..|+++|++    ++||.|..|++
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C~k   48 (48)
T 2epr_A           16 EICGKIFRDVYHLNRHKLSHSG----EKPYSSGPSSG   48 (48)
T ss_dssp             TTTTEEESSHHHHHHHGGGSCS----CCCCCSCCCCC
T ss_pred             CCCCcccCCHHHHHHHHHhcCC----CCCccCCCCCC
Confidence            4678899999999999999999    99999999985

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=3.4e-06  Score=53.08  Aligned_cols=64  Identities=8%  Similarity=0.043  Sum_probs=49.5

Q ss_pred             CcccccCCCCCCCCCCCC-----CCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCC
Q 044394            2 GKTHVQDKNPGKNPNNVQ-----NPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~-----~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      |+..+++|.--.++..+.     +..| ..+.|..|+ .|.+    ++|+.|+.|++.|. ...|..|+.+|++++
T Consensus         1 ~~~~L~~H~~~~c~~r~~~C~~C~~~~-~~~~L~~H~-~~c~----~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            1 GSSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHE-DYCG----ARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCCCSCCCCCCCCCCCEECSSSCCEE-CHHHHHHHH-HHHH----HCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             CchHHHhhCcccCCCcccCCcccChHh-hHHHHHHHH-hHcC----CCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            567788887767776433     3344 578899998 8888    99999999999877 488999998888864

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=2.4e-07  Score=56.46  Aligned_cols=48  Identities=21%  Similarity=0.238  Sum_probs=38.3

Q ss_pred             CCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHHHHHH
Q 044394           25 ENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLSA   83 (140)
Q Consensus        25 k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~~~~   83 (140)
                      ..+.|..|+++|++    ++||.|..|++.|.....|..       +++|.+..+...+
T Consensus         2 ~~~~l~~H~~~h~~----~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f   49 (73)
T 2ctu_A            2 SSGSSGKRQKIHLG----DRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDS   49 (73)
T ss_dssp             CCCSCCCCCCCCCC----CSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTC
T ss_pred             cchhHHHHHHHhCC----CCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhh
Confidence            34568889998888    999999999999999998876       6777665554443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=97.93  E-value=4.4e-07  Score=55.72  Aligned_cols=38  Identities=29%  Similarity=0.563  Sum_probs=34.0

Q ss_pred             Ccccccc--ccCcccCCchhHhhhcccccCCCChHHHHHH
Q 044394           43 YGPYKCP--KCNGAFGTSQAFAAHMRSHYKYETSAERKRR   80 (140)
Q Consensus        43 ekP~~C~--~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~   80 (140)
                      ++||.|+  .|++.|.....|..|+++|.++++|.|..+.
T Consensus        17 ~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~   56 (73)
T 1f2i_G           17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICM   56 (73)
T ss_dssp             CCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             CCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCC
Confidence            9999997  5999999999999999999999998765443

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.91  E-value=7.9e-06  Score=45.51  Aligned_cols=45  Identities=11%  Similarity=-0.034  Sum_probs=35.7

Q ss_pred             cccccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            3 KTHVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         3 ~~~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |.|++.|...+-.. .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2eme_A            1 GSSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCC----CSCCSSCCC
T ss_pred             CCCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCC----CCCCCCCCC
Confidence            35666665554433 4568999999999999999999    999999987

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.90  E-value=3.4e-06  Score=41.99  Aligned_cols=27  Identities=22%  Similarity=0.518  Sum_probs=24.9

Q ss_pred             cccccc--ccCcccCCchhHhhhcccccC
Q 044394           44 GPYKCP--KCNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        44 kP~~C~--~Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      +||.|.  .|++.|.....|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            589999  999999999999999999874

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=97.89  E-value=1.9e-05  Score=44.03  Aligned_cols=43  Identities=7%  Similarity=-0.051  Sum_probs=33.3

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |...|...+... .+|...|...+.|..|+++|++    ++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSC----CSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCC----CCCCCCCCC
Confidence            344444433333 4668999999999999999999    999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.89  E-value=7.4e-06  Score=45.79  Aligned_cols=45  Identities=11%  Similarity=0.014  Sum_probs=35.5

Q ss_pred             cccccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            3 KTHVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         3 ~~~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |.|+..|...+-. ..+|+..|...+.|..|+++|++    ++||.|+.|
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2em5_A            1 GSSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSC----SCCSSCCCC
T ss_pred             CCCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCC----CCCCCCCCC
Confidence            3455556554433 35678999999999999999999    999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.88  E-value=1.4e-05  Score=44.55  Aligned_cols=43  Identities=12%  Similarity=-0.023  Sum_probs=33.7

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |...|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTT----CCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCC----CCCCCCCCC
Confidence            444454444333 4568999999999999999999    999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.88  E-value=1.5e-05  Score=44.34  Aligned_cols=43  Identities=14%  Similarity=-0.052  Sum_probs=33.9

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSG----EKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCS----SSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCC----CCCCCCCCC
Confidence            444454444333 4678999999999999999999    999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.87  E-value=1.8e-05  Score=44.05  Aligned_cols=43  Identities=14%  Similarity=-0.008  Sum_probs=33.4

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSC----CCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCC----CCCCCCCCC
Confidence            344444444333 4568999999999999999999    999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.86  E-value=2e-05  Score=43.97  Aligned_cols=43  Identities=7%  Similarity=-0.045  Sum_probs=33.6

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |...|...+-.. .+|...|...+.|..|+++|++    ++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMG----EKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGS----CCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCC----CCCCCCCCC
Confidence            344444444333 4668999999999999999999    999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=97.85  E-value=2.5e-05  Score=43.44  Aligned_cols=43  Identities=7%  Similarity=-0.104  Sum_probs=33.3

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+-. ..+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVG----EKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSS----SSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCC----CCCcCCCCC
Confidence            34444443333 35678999999999999999999    999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.84  E-value=1e-05  Score=45.06  Aligned_cols=44  Identities=9%  Similarity=0.051  Sum_probs=34.7

Q ss_pred             ccccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            4 THVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      .|+..|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTG----EKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSS----CCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCC----CCCCCCCCC
Confidence            4555555544433 4568999999999999999999    999999887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.84  E-value=2.1e-05  Score=43.86  Aligned_cols=43  Identities=12%  Similarity=-0.099  Sum_probs=33.2

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |...|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSG----EKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCC----SCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCC----CCCCCCCCC
Confidence            334444444333 4568999999999999999999    999999987

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=97.83  E-value=1.3e-06  Score=53.58  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=32.5

Q ss_pred             Cccccccc--cCcccCCchhHhhhcccccCCCChHH
Q 044394           43 YGPYKCPK--CNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        43 ekP~~C~~--Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      .++|.|..  |++.|.....|..|+++|++++||.|
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C   50 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSC   50 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEEC
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccC
Confidence            88999988  99999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.83  E-value=2.4e-05  Score=43.56  Aligned_cols=43  Identities=7%  Similarity=-0.045  Sum_probs=33.5

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |...|...+-. ..+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTA----EKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTC----CCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCC----CCCCCCCCC
Confidence            44444443333 35678999999999999999999    999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.82  E-value=1.2e-05  Score=44.79  Aligned_cols=44  Identities=9%  Similarity=-0.056  Sum_probs=34.6

Q ss_pred             ccccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            4 THVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      .|+..|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTK----QKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSC----CCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCC----CCCCCCCCC
Confidence            4555555444333 5668999999999999999999    999999876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.82  E-value=1.6e-05  Score=44.20  Aligned_cols=43  Identities=16%  Similarity=0.054  Sum_probs=33.5

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTG----VKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSC----CCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCC----CCCCCCCCC
Confidence            344444443333 5678999999999999999999    999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.82  E-value=1.6e-05  Score=44.43  Aligned_cols=43  Identities=12%  Similarity=-0.008  Sum_probs=34.0

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |...|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTG----QRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHS----CCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCC----CCCCCCCCC
Confidence            444454444433 5678999999999999999999    999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=97.82  E-value=2.3e-05  Score=43.68  Aligned_cols=43  Identities=9%  Similarity=-0.023  Sum_probs=33.2

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSS----CCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCC----CCCCCCCCC
Confidence            344444433333 4568999999999999999999    999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.81  E-value=2.4e-05  Score=43.43  Aligned_cols=43  Identities=14%  Similarity=0.009  Sum_probs=33.5

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTG----ENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTT----SCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCC----CCCCCCCCC
Confidence            444454444333 4568999999999999999999    999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.81  E-value=1.1e-05  Score=45.07  Aligned_cols=44  Identities=7%  Similarity=-0.136  Sum_probs=35.0

Q ss_pred             ccccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            4 THVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      .|+..|...+-.. .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFR----EKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHS----TTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcC----CCCCCCCCC
Confidence            4555555544433 5678999999999999999999    999999987

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=97.81  E-value=2.8e-06  Score=54.02  Aligned_cols=37  Identities=24%  Similarity=0.455  Sum_probs=33.4

Q ss_pred             CccccccccCcccCCchhHhhhcccccCCCChHHHHH
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKR   79 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~   79 (140)
                      ++||.|..|++.|.....|..|+++|++++||.|..+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   37 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC   37 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTT
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCC
Confidence            5799999999999999999999999999999876443

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.78  E-value=1.1e-05  Score=44.93  Aligned_cols=44  Identities=11%  Similarity=0.043  Sum_probs=34.8

Q ss_pred             ccccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            4 THVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      .|+..|...+-.. .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTG----EKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSC----CCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCC----CCCCCCCCC
Confidence            4555555444333 5678999999999999999999    999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.78  E-value=3e-05  Score=43.02  Aligned_cols=43  Identities=5%  Similarity=-0.152  Sum_probs=33.3

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG----ERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSC----CSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCC----CCCCCCCCC
Confidence            344444433333 4668999999999999999999    999999987

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.78  E-value=1.5e-05  Score=44.68  Aligned_cols=30  Identities=13%  Similarity=-0.010  Sum_probs=28.2

Q ss_pred             CCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394           18 VQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus        18 ~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      +|...|.....|..|+++|++    ++||.|..|
T Consensus        19 ~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   48 (48)
T 2ent_A           19 GCGWRFSRSDELSRHRRSHSG----VKPSGPSSG   48 (48)
T ss_dssp             SCCCEESSHHHHHHHHTTSCC----CCSCSSCCC
T ss_pred             CCCCccCCHHHHHHHHHHhCC----CCCCCCCCC
Confidence            689999999999999999999    999999887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.78  E-value=1.7e-05  Score=44.20  Aligned_cols=43  Identities=12%  Similarity=0.059  Sum_probs=33.6

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |...|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSC----SSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCC----CCCCCCCCC
Confidence            444454444333 4578999999999999999999    999999887

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.77  E-value=1e-05  Score=44.97  Aligned_cols=32  Identities=19%  Similarity=0.131  Sum_probs=29.5

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCN   52 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cg   52 (140)
                      .+|...|...+.|..|+++|++    ++||.|+.||
T Consensus        14 ~~C~k~f~~~~~l~~H~~~H~~----~~~~~C~~cg   45 (45)
T 2epq_A           14 PVCGLRFKRKDRMSYHVRSHDG----SVGKSGPSSG   45 (45)
T ss_dssp             TTTTEECSCHHHHHHHHHHHSC----CCCCCCCCCC
T ss_pred             CCCCcccCCHHHHHHHHHHccC----CCCCCCcCCC
Confidence            4578899999999999999999    9999999996

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.76  E-value=1.8e-05  Score=44.07  Aligned_cols=44  Identities=14%  Similarity=-0.055  Sum_probs=34.0

Q ss_pred             ccccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            4 THVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      .|...|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSG----EKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCC----SSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCC----CCCCCCCCC
Confidence            3444454444333 4668999999999999999999    999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=97.75  E-value=1.8e-05  Score=44.00  Aligned_cols=43  Identities=9%  Similarity=-0.106  Sum_probs=33.3

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+-. ..+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTG----VKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSS----CCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCC----CCCCCCCCC
Confidence            44444443333 34668999999999999999999    999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.74  E-value=2.3e-05  Score=43.53  Aligned_cols=43  Identities=7%  Similarity=-0.197  Sum_probs=33.5

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |++.|...+.. ..+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVD----DKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCS----CCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCC----CCCCCCCCC
Confidence            44444444333 34678999999999999999999    999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.74  E-value=2.1e-05  Score=43.73  Aligned_cols=43  Identities=9%  Similarity=-0.102  Sum_probs=33.1

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |...|...+.. ..+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTT----CCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCC----CCCCCCCCC
Confidence            33444433333 35678999999999999999999    999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.74  E-value=1.6e-05  Score=44.32  Aligned_cols=43  Identities=12%  Similarity=-0.050  Sum_probs=33.5

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |...|...+.. ..+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTG----EKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSS----CCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCC----CCCCCCCCC
Confidence            44444444433 35678999999999999999999    999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.74  E-value=1.7e-05  Score=44.15  Aligned_cols=43  Identities=16%  Similarity=0.026  Sum_probs=33.2

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+... .+|...|...+.|..|+++|++    ++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCC----CCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCC----CCCCCCCCC
Confidence            444444433333 4568999999999999999999    999999987

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.74  E-value=3.2e-05  Score=43.01  Aligned_cols=43  Identities=12%  Similarity=-0.097  Sum_probs=33.9

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhh-hhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGR-IHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r-~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+... .+|...|...+.|..|++ +|++    ++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~----~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG----EKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTT----SCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCC----CCCCCCCCC
Confidence            445555444333 567899999999999999 9999    999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.73  E-value=2e-05  Score=43.80  Aligned_cols=43  Identities=12%  Similarity=-0.008  Sum_probs=33.1

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+.. ..+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSC----CCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCC----CCCCCCCCC
Confidence            33444433332 35678999999999999999999    999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.72  E-value=1.9e-05  Score=43.83  Aligned_cols=43  Identities=9%  Similarity=-0.128  Sum_probs=33.2

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+-. ..+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMG----EKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCC----SCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCC----CCCCCCCCC
Confidence            34444443333 35668999999999999999999    999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=4.1e-05  Score=42.47  Aligned_cols=31  Identities=16%  Similarity=0.101  Sum_probs=28.5

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      .+|...|...+.|..|+++|++    ++||.|..|
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2ytr_A           16 NECGKAFSQTSKLARHQRIHTG----EKPSGPSSG   46 (46)
T ss_dssp             TTTCCCCSSHHHHHHHHTTTTT----CSCCCSCCC
T ss_pred             CCCCCccCCHHHHHHHHHhcCC----CCCCCCCCC
Confidence            4678999999999999999999    999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=2.2e-05  Score=43.67  Aligned_cols=43  Identities=14%  Similarity=0.022  Sum_probs=33.2

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+-.. .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTG----GKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHS----CCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCC----CCCCCCCCC
Confidence            334444433333 4568999999999999999999    999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=2.4e-05  Score=43.50  Aligned_cols=43  Identities=16%  Similarity=0.001  Sum_probs=33.2

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+.. ..+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSS----SSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCC----CCCCCCCCC
Confidence            44444443333 34678999999999999999999    999999887

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=2.5e-05  Score=43.46  Aligned_cols=43  Identities=9%  Similarity=-0.020  Sum_probs=33.0

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+.. ..+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSS----CCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCC----CCCCCCCCC
Confidence            33344433333 25678999999999999999999    999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=2.6e-05  Score=43.37  Aligned_cols=31  Identities=16%  Similarity=0.179  Sum_probs=28.5

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2ytd_A           16 SECGKAFHRHTHLNEHRRIHTG----YRPSGPSSG   46 (46)
T ss_dssp             SSSCCEESSHHHHHHHHHHHTC----CCSSCSSCC
T ss_pred             CCCCCeeCChHHHHHHHHHcCC----CCCCCCCCC
Confidence            4678999999999999999999    999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.69  E-value=2.3e-05  Score=43.15  Aligned_cols=31  Identities=6%  Similarity=-0.044  Sum_probs=28.5

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      .+|...|...+.|..|+++|++    ++||.|..|
T Consensus        14 ~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   44 (44)
T 2emx_A           14 SCCEKAFSSKSYLLVHQQTHAE----EKPSGPSSG   44 (44)
T ss_dssp             SSSSCEESSHHHHHHHHHHHTS----SCSCSCCCC
T ss_pred             CCCCcccCCHHHHHHHHHHhCC----CCCCCCCCC
Confidence            4678999999999999999999    999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.67  E-value=2.8e-05  Score=43.27  Aligned_cols=31  Identities=10%  Similarity=-0.037  Sum_probs=28.6

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus        16 ~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2emy_A           16 HECGKAFSRKYQLISHQRTHAG----EKPSGPSSG   46 (46)
T ss_dssp             SSSCCEESSHHHHHHHHHHHTT----SCCSCSSCC
T ss_pred             CCCCcccCcHHHHHHHHHHcCC----CCCCCCCCC
Confidence            4678999999999999999999    999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=97.67  E-value=3.2e-05  Score=42.94  Aligned_cols=43  Identities=14%  Similarity=-0.048  Sum_probs=32.9

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |...|...+-.. .+|...|...+.|..|+++|++    ++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSG----EKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTS----CCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCC----CCCCCCCCC
Confidence            334444333332 4668999999999999999999    999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.67  E-value=2.7e-05  Score=43.33  Aligned_cols=31  Identities=13%  Similarity=0.027  Sum_probs=28.3

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus        16 ~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~c   46 (46)
T 2eq0_A           16 HECGKVFRRNSHLARHQLIHTG----EKPSGPSSG   46 (46)
T ss_dssp             TTTCCEESSHHHHHHHHTTTCC----CCCSCCSCC
T ss_pred             CCCCchhCCHHHHHHHHHHcCC----CCCCCCCCC
Confidence            4568999999999999999999    999999987

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=97.67  E-value=1.8e-05  Score=49.18  Aligned_cols=44  Identities=16%  Similarity=0.247  Sum_probs=40.3

Q ss_pred             CCCcCCCCchHHHHhhhhcCCCCCCccccccc---cCcccCCchhHhhhccccc
Q 044394           19 QNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK---CNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        19 ~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~---Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      |+..|.....|..|+++|++       |.|..   |++.|.....|..|+++|.
T Consensus        39 C~~~f~~~~~l~~H~~~h~~-------~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           39 CDKRFSLPSRLKRHEKVHAG-------YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CCCEESSHHHHHHHHHHHHS-------EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCHHHHHHHHHHhCC-------CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            78999999999999999985       89999   9999999999999998763

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.67  E-value=3e-05  Score=43.14  Aligned_cols=43  Identities=19%  Similarity=0.052  Sum_probs=33.0

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+-. ..+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSG----KKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSS----CCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcC----CCCCCCCCC
Confidence            33444433332 35678999999999999999999    999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=97.66  E-value=2.9e-05  Score=43.15  Aligned_cols=43  Identities=14%  Similarity=0.009  Sum_probs=32.8

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+.. ..+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTG----EKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGC----CCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCC----CCCCCCCCC
Confidence            33444433333 24568999999999999999999    999999887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.66  E-value=2.5e-05  Score=43.43  Aligned_cols=43  Identities=12%  Similarity=-0.106  Sum_probs=33.3

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+-. ..+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHC----CSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCC----CCCCCCCCC
Confidence            34444443332 35678999999999999999999    999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.65  E-value=2.6e-05  Score=43.37  Aligned_cols=43  Identities=9%  Similarity=0.001  Sum_probs=33.3

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+.. ..+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHC----SSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCC----CCCCCCCCC
Confidence            34444443333 35678999999999999999999    999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=97.65  E-value=2.4e-05  Score=43.57  Aligned_cols=31  Identities=10%  Similarity=0.024  Sum_probs=28.5

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      .+|...|.....|..|+++|++    ++||.|..|
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2el6_A           16 SQCEKSFSGKLRLLVHQRMHTR----EKPSGPSSG   46 (46)
T ss_dssp             SSSSCEESSHHHHHHHHGGGCC----SSCCSCCCC
T ss_pred             CCCCcccCCHHHHHHHHHHcCC----CCCCCCCCC
Confidence            5678999999999999999999    999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.64  E-value=3.4e-05  Score=42.89  Aligned_cols=43  Identities=5%  Similarity=-0.222  Sum_probs=33.1

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |...|...+-. ..+|...|...+.|..|+++|++    ++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMG----QKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSC----CSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCC----CCCCCCCCC
Confidence            33344433332 35678999999999999999999    999999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.64  E-value=2.2e-05  Score=43.71  Aligned_cols=31  Identities=16%  Similarity=0.148  Sum_probs=28.5

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      .+|...|.....|..|+++|++    ++||.|..|
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2ep0_A           16 DVCHKSFRYGSSLTVHQRIHTG----EKPSGPSSG   46 (46)
T ss_dssp             SSSCCEESSHHHHHHHHTTTSS----SCCCSCCCC
T ss_pred             cccCcccCChHHHHHHHHHhCC----CCCCCCCCC
Confidence            5678999999999999999999    999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.63  E-value=1.8e-05  Score=44.07  Aligned_cols=43  Identities=7%  Similarity=0.023  Sum_probs=33.3

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG----ERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCS----CCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCC----CCCCCCCCC
Confidence            344444443333 5678899999999999999999    999999987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.61  E-value=2.1e-05  Score=43.83  Aligned_cols=31  Identities=6%  Similarity=-0.105  Sum_probs=28.6

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~C   46 (46)
T 2ytt_A           16 SECGKSFSGSYRLTQHWITHTR----EKPSGPSSG   46 (46)
T ss_dssp             SSSCCCCSSHHHHHHHHTHHHH----CCCCSCCCC
T ss_pred             CCCCcccCCHHHHHHHHHHcCC----CCCCCCCCC
Confidence            4678999999999999999999    999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.60  E-value=3.5e-05  Score=42.88  Aligned_cols=31  Identities=13%  Similarity=0.089  Sum_probs=28.6

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      .+|...|...+.|..|+++|++    ++||.|..|
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~C   46 (46)
T 2em8_A           16 VECGKGYKRRLDLDFHQRVHTG----EKLSGPSSG   46 (46)
T ss_dssp             SSSCCEESSHHHHHHHHHHHHC----CCCCCSCCC
T ss_pred             cccCchhCCHHHHHHHHHHHcC----CCCCCCCCC
Confidence            4678999999999999999999    999999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.54  E-value=5.8e-05  Score=41.95  Aligned_cols=43  Identities=14%  Similarity=0.005  Sum_probs=33.2

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |...|...+... .+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCC----CCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCC----CCCCCCCCC
Confidence            444454444333 4568999999999999999999    999999865

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.52  E-value=1.1e-05  Score=48.70  Aligned_cols=34  Identities=15%  Similarity=0.135  Sum_probs=31.3

Q ss_pred             CCccccccccCcccCCchhHhhhcccccCCCChHHH
Q 044394           42 KYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAER   77 (140)
Q Consensus        42 ~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~   77 (140)
                      +++||.|..|++.|. ...|..|+++ ++++||.+.
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~   40 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACP   40 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECT
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCC
Confidence            489999999999999 9999999999 999998765

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.52  E-value=6e-05  Score=41.81  Aligned_cols=44  Identities=9%  Similarity=-0.003  Sum_probs=34.1

Q ss_pred             cccccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            3 KTHVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         3 ~~~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      |+|+..|...+.. +.+|...|...+.|..|+++|++    ++||.|+.
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~----~~~~~C~~   45 (46)
T 2em3_A            1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTG----EKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCC----CCCCCSCC
T ss_pred             CCCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCC----CCCCCCCC
Confidence            3556656554433 35678999999999999999999    99999963

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.51  E-value=5.8e-05  Score=41.89  Aligned_cols=43  Identities=9%  Similarity=-0.050  Sum_probs=32.6

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKC   51 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~C   51 (140)
                      |+..|...+.. +.+|...|...+.|..|+++|++    ++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG----EKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTT----SCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCC----CCCCCCCCC
Confidence            33444443333 34678999999999999999999    999999865

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.49  E-value=2.7e-06  Score=53.58  Aligned_cols=47  Identities=9%  Similarity=0.027  Sum_probs=40.2

Q ss_pred             chHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCCCChHHHHH
Q 044394           27 QDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKR   79 (140)
Q Consensus        27 s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~   79 (140)
                      ..|..|+++|.+    ++|+.|..|++.|. ...|..|. .|.+++|+.+..+
T Consensus         3 ~~L~~H~~~~c~----~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C   49 (75)
T 2d9k_A            3 SGSSGHEETECP----LRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNC   49 (75)
T ss_dssp             CCCSCCCCCCCC----CCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSS
T ss_pred             hHHHhhCcccCC----CcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccC
Confidence            457778888888    99999999999995 88999999 8999999876554

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.47  E-value=0.00015  Score=40.16  Aligned_cols=43  Identities=12%  Similarity=0.055  Sum_probs=32.6

Q ss_pred             ccccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            4 THVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      .|+..|...+-.. .+|...|...+.|..|+++|++    ++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTG----EKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTT----CCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCC----CCCCCCCC
Confidence            3455554444333 4678999999999999999999    99999963

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=97.45  E-value=1.8e-05  Score=47.50  Aligned_cols=54  Identities=11%  Similarity=0.212  Sum_probs=38.1

Q ss_pred             ccccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhh
Q 044394            4 THVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAH   64 (140)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H   64 (140)
                      .|...|...+... .+|...|.....|.   ++|++    ++||.|..|++.|....++..+
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~----~k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPM----TGTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETT----TTEEBCSSSCCBCEECTTCSCC
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHHhH---hhcCC----CCCEECCCCCCccccCcccccc
Confidence            4555555444333 34567777766665   78888    9999999999999988766533

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.43  E-value=0.00018  Score=39.91  Aligned_cols=41  Identities=7%  Similarity=-0.084  Sum_probs=32.0

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |+..|...+... .+|...|...+.|..|+++|++    ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTG----ERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSS----CCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCC----CCCCCCC
Confidence            445554444333 4668999999999999999999    9999986

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.42  E-value=0.00011  Score=40.28  Aligned_cols=42  Identities=5%  Similarity=-0.062  Sum_probs=32.8

Q ss_pred             ccccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            4 THVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      .|+..|...+-.. .+|...|...+.|..|+++|++    ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAA----KSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCC----CCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCC----CCCcCCC
Confidence            4556665544333 4678999999999999999999    9999984

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.39  E-value=0.00029  Score=38.97  Aligned_cols=39  Identities=15%  Similarity=0.099  Sum_probs=30.3

Q ss_pred             cCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            7 QDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         7 ~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      ..|...+... .+|...|.....|..|+++|++    ++||.|+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~   44 (46)
T 2enh_A            5 SSGTGEKPYECDVCRKAFSHHASLTQHQRVHSG----EKPSGPS   44 (46)
T ss_dssp             CCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCC----SCCCCCC
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCC----CCCCCCC
Confidence            3344333333 4678999999999999999999    9999996

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.36  E-value=0.00024  Score=39.26  Aligned_cols=42  Identities=14%  Similarity=0.010  Sum_probs=31.8

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      |+..|...+... .+|...|...+.|..|+++|++    ++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTG----EKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSC----SCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCC----CCCCCCCC
Confidence            344444444333 4568999999999999999999    99999963

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.35  E-value=0.00028  Score=38.99  Aligned_cols=42  Identities=14%  Similarity=0.076  Sum_probs=31.4

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      |+..|...+-. +.+|...|...+.|..|+++|++    ++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTG----EKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCC----CCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCC----CCCCCCCC
Confidence            33444433333 34678999999999999999999    99999963

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.35  E-value=0.0001  Score=40.46  Aligned_cols=43  Identities=9%  Similarity=-0.048  Sum_probs=33.2

Q ss_pred             cccccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            3 KTHVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         3 ~~~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |.|...|...+.. +.+|...|...+.|..|+++|++    ++||.|.
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~----~~~~~C~   44 (44)
T 2eox_A            1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR----KSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCC----CCCCSCC
T ss_pred             CCCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCC----CCCCCCC
Confidence            3455555554433 35678999999999999999999    9999984

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.34  E-value=0.00025  Score=39.18  Aligned_cols=42  Identities=14%  Similarity=-0.005  Sum_probs=31.7

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      |+..|...+... .+|...|...+.|..|+++|++    ++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTG----EKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTT----SSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCC----CCCCCCCC
Confidence            344444444333 4678999999999999999999    99999963

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.32  E-value=0.0003  Score=38.55  Aligned_cols=41  Identities=2%  Similarity=-0.160  Sum_probs=30.9

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |++.+...+.. +.+|...|...+.|..|+++|++    ++||.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAG----ESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTT----SCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCC----CCCCCCC
Confidence            33444443333 34678999999999999999999    9999984

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.31  E-value=0.00027  Score=39.01  Aligned_cols=41  Identities=7%  Similarity=-0.064  Sum_probs=31.6

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |...|...+-. +.+|...|...+.|..|+++|++    ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTG----ERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSC----CCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCC----CCCCCCC
Confidence            44444444433 35678999999999999999999    9999996

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.31  E-value=0.0003  Score=38.90  Aligned_cols=41  Identities=15%  Similarity=0.034  Sum_probs=31.4

Q ss_pred             ccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            6 VQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         6 ~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      ...|...+... .+|...|...+.|..|+++|++    ++||.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~   45 (46)
T 2en9_A            4 GSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTG----EKPSGPSS   45 (46)
T ss_dssp             CSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTS----SCCCSCCC
T ss_pred             CCCCCCCCCEECCccCcccCCHHHHHHHHHHcCC----CCCCCCCC
Confidence            33444444333 4578999999999999999999    99999963

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.30  E-value=0.00031  Score=38.77  Aligned_cols=41  Identities=12%  Similarity=0.016  Sum_probs=31.2

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |+..|...+... .+|...|.....|..|+++|++    ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG----EKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCC----SCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCC----CCCCCCC
Confidence            444444433333 4568999999999999999999    9999996

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.29  E-value=0.00036  Score=38.45  Aligned_cols=30  Identities=13%  Similarity=0.103  Sum_probs=27.0

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      .+|...|...+.|..|+++|++    ++||.|+.
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~   45 (46)
T 2ep1_A           16 SDCGKSFIKKSQLHVHQRIHTG----ENPSGPSS   45 (46)
T ss_dssp             SSSCCCCSSHHHHHHHHGGGSS----SCCCSSSC
T ss_pred             CCCCchhCCHHHHHHHHHHhCC----CCCCCCCC
Confidence            5678999999999999999999    99999963

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.28  E-value=0.00035  Score=37.65  Aligned_cols=29  Identities=7%  Similarity=0.008  Sum_probs=26.3

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      .+|...|...+.|..|+++|++    ++||.|.
T Consensus        14 ~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~   42 (42)
T 2yte_A           14 AECKETFSDNNRLVQHQKMHTV----KSGPSSG   42 (42)
T ss_dssp             TTTCCBCSSHHHHHHHHHHTSC----CSSCCCC
T ss_pred             CCCCCccCCHHHHHHHHHHhCC----CCCCCCC
Confidence            5678999999999999999999    9999984

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.27  E-value=0.00034  Score=38.69  Aligned_cols=41  Identities=12%  Similarity=0.046  Sum_probs=31.0

Q ss_pred             ccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            6 VQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         6 ~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      ...|...+-. +.+|...|...+.|..|+++|++    ++||.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~   45 (46)
T 2em6_A            4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTG----EKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSS----SCCCCTTC
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHcCC----CCCCCCCC
Confidence            3344443333 34678999999999999999999    99999963

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.27  E-value=0.00017  Score=39.94  Aligned_cols=42  Identities=10%  Similarity=-0.077  Sum_probs=31.7

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      |...|...+.. +.+|...|...+.|..|+++|++    ++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTG----EKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSS----SSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCC----CCCCCCCC
Confidence            34444443333 35678999999999999999999    99999963

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.26  E-value=0.00033  Score=38.15  Aligned_cols=41  Identities=10%  Similarity=-0.117  Sum_probs=30.9

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |...|...+-. +.+|...|...+.|..|+++|++    ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTG----ESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCC----SSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCC----CCCCCCC
Confidence            33444433332 35678999999999999999999    9999984

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.25  E-value=0.00019  Score=39.28  Aligned_cols=30  Identities=7%  Similarity=-0.135  Sum_probs=27.0

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      .+|...|...+.|..|+++|++    ++||.|+.
T Consensus        14 ~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~   43 (43)
T 2yrm_A           14 NECDCRFSEEASLKRHTLQTHS----DKSGPSSG   43 (43)
T ss_dssp             SSSCCCBSSHHHHHHHHHHHTC----TTCSSSCC
T ss_pred             CCCCCeeCChHHHHHHHHhhCC----CCCccCCC
Confidence            4678999999999999999999    99999963

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.25  E-value=0.00038  Score=43.90  Aligned_cols=43  Identities=9%  Similarity=-0.085  Sum_probs=33.0

Q ss_pred             ccccCCCCCCCCCC---CCCCcCCCCchHHHHh-hhhcCCCCCCccccccc
Q 044394            4 THVQDKNPGKNPNN---VQNPNRKENQDVEYDG-RIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         4 ~~~~~~~~~~~~~~---~~~~~~~k~s~L~~H~-r~Htg~h~~ekP~~C~~   50 (140)
                      ...+.+++-+-..+   .|+.+|..+++|..|+ ++|++    ++||.|..
T Consensus        17 ~~~~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTg----EKP~~~~~   63 (73)
T 1x3c_A           17 EFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKS----DLPAFSAE   63 (73)
T ss_dssp             CCSSSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSS----CCCCCCCS
T ss_pred             cccccccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCC----CCCccccc
Confidence            33444555554444   4899999999999997 78999    99999965

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.21  E-value=0.00039  Score=38.51  Aligned_cols=30  Identities=13%  Similarity=0.063  Sum_probs=26.9

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      .+|...|.....|..|+++|++    ++||.|+.
T Consensus        16 ~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~   45 (46)
T 2eon_A           16 QVCGKAFRVSSHLVQHHSVHSG----ERPSGPSS   45 (46)
T ss_dssp             SSSCCBCSSHHHHHHHTTTTTS----CCSCTTSC
T ss_pred             CCCCcccCcHHHHHHHHHhcCC----CCCCCCCC
Confidence            4678999999999999999999    99999963

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.21  E-value=0.00021  Score=39.39  Aligned_cols=42  Identities=10%  Similarity=-0.047  Sum_probs=31.9

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      |...|...+.. +.+|...|...+.|..|+++|++    ++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTG----EKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCS----SSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCC----CCCCCCCC
Confidence            34444444433 34678999999999999999999    99999963

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.20  E-value=0.00022  Score=39.59  Aligned_cols=29  Identities=14%  Similarity=-0.011  Sum_probs=26.7

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      .+|...|...+.|..|+++|++    ++||.|.
T Consensus        16 ~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~   44 (46)
T 2eom_A           16 SDCGKFFLQASNFIQHRRIHTG----EKPSGPS   44 (46)
T ss_dssp             SSSCCCCSSHHHHHHHHHHHSS----CCCSSCC
T ss_pred             CCCCCeeCChHHHHHHHHHhCC----CCCCCCC
Confidence            5678999999999999999999    9999996

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=97.20  E-value=0.00023  Score=38.44  Aligned_cols=29  Identities=7%  Similarity=-0.058  Sum_probs=26.4

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      .+|...|...+.|..|+++|++    ++||.|+
T Consensus        14 ~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~   42 (42)
T 2el5_A           14 SECGKAFNRKDQLISHQRTHAG----ESGPSSG   42 (42)
T ss_dssp             SSSCCEESSHHHHHHHHGGGCC----CCSCCCC
T ss_pred             CCcChhhCCHHHHHHHHHhcCC----CCCCCCC
Confidence            4678999999999999999999    9999984

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.20  E-value=0.00023  Score=39.39  Aligned_cols=42  Identities=10%  Similarity=-0.010  Sum_probs=32.0

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      |.+.|...+.. +.+|...|...+.|..|+++|++    ++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTG----EKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSC----CCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCC----CCCCCCCC
Confidence            44444444433 35678999999999999999999    99999963

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=97.19  E-value=0.00024  Score=39.36  Aligned_cols=42  Identities=12%  Similarity=-0.033  Sum_probs=31.7

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      |+..|...+.. +.+|...|.....|..|+++|++    ++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTG----EKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTT----SCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCC----CCCCCCCC
Confidence            34444443333 35678999999999999999999    99999963

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.17  E-value=0.00027  Score=39.00  Aligned_cols=41  Identities=10%  Similarity=-0.005  Sum_probs=31.3

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |...|...+.. +.+|...|...+.|..|+++|++    ++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRG----EKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCS----CCCCSCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCC----CCCCCCC
Confidence            44444443333 34568999999999999999999    9999996

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.17  E-value=0.00028  Score=38.91  Aligned_cols=42  Identities=14%  Similarity=0.025  Sum_probs=31.5

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      |+..|...+.. +.+|...|...+.|..|+++|++    ++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTG----EKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSS----CCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCC----CCCcCCCC
Confidence            33444433333 34678999999999999999999    99999963

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.15  E-value=4.6e-05  Score=49.40  Aligned_cols=47  Identities=4%  Similarity=-0.012  Sum_probs=39.7

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      .+|...|...+.|..|+++|++    ++||.|..|    .....|..|.++|.+.
T Consensus        29 ~~C~k~F~~~~~L~~H~~~Ht~----ekp~~C~~~----~~~~~~~~~~~~~~~~   75 (88)
T 1x6f_A           29 KHCDSKLQSTAELTSHLNIHNE----EFQKRAKRQ----ERRKQLLSKQKYADGA   75 (88)
T ss_dssp             SSSCCEESSHHHHHHHHHHHHH----HHHHHCCCC----SCCCCCCCCCCCCCCS
T ss_pred             CCCCCEeCCHHHHHHHHHHhCC----CCCcccchh----hhHHHHHhhhcccccc
Confidence            4578899999999999999999    999999765    4577788888888874

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.15  E-value=0.00023  Score=39.28  Aligned_cols=42  Identities=12%  Similarity=-0.003  Sum_probs=31.8

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      |+..|...+.. +.+|...|...+.|..|+++|++    ++||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~----~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTG----EKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHS----CCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCC----CCCCCCCC
Confidence            44444443333 35678999999999999999999    99999963

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.15  E-value=0.0003  Score=38.75  Aligned_cols=42  Identities=12%  Similarity=-0.034  Sum_probs=31.6

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      |+..|...+-. +.+|...|...+.|..|+++|++    ++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSG----EKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCC----CSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCC----CCCCCCCC
Confidence            33444433332 35678999999999999999999    99999963

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.14  E-value=0.00036  Score=37.59  Aligned_cols=39  Identities=13%  Similarity=0.062  Sum_probs=29.8

Q ss_pred             ccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCccccc
Q 044394            6 VQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKC   48 (140)
Q Consensus         6 ~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C   48 (140)
                      ...|...+.. +.+|...|...+.|..|+++|++    ++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C   42 (42)
T 2ytb_A            3 SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG----SGPSSG   42 (42)
T ss_dssp             CCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSC----CSCCCC
T ss_pred             ccccCCCCCeeCCCccchhCCHHHHHHHHHHhCC----CCCCCC
Confidence            3344443333 34678999999999999999999    999987

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.11  E-value=0.00014  Score=40.10  Aligned_cols=30  Identities=10%  Similarity=0.024  Sum_probs=27.0

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      .+|...|.....|..|+++|++    ++||.|+.
T Consensus        16 ~~C~k~F~~~~~L~~H~~~H~~----~k~~~C~~   45 (45)
T 2epu_A           16 THCGKSFRAKGNLVTHQRIHTG----EKSGPSSG   45 (45)
T ss_dssp             TTTTEEESSHHHHHHHHTTTSS----CCCCCSCC
T ss_pred             CCCCCccCChHHHHHHHHHhCC----CCCCCCCC
Confidence            5678999999999999999999    99999963

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.09  E-value=0.00033  Score=38.58  Aligned_cols=41  Identities=12%  Similarity=0.006  Sum_probs=31.0

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |+..|...+.. +.+|...|...+.|..|+++|++    ++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTG----EKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSS----CCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCC----CCCCCCC
Confidence            33444433332 35678999999999999999999    9999996

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.08  E-value=0.00036  Score=37.96  Aligned_cols=41  Identities=10%  Similarity=-0.066  Sum_probs=30.8

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |...|...+-. +.+|...|...+.|..|+++|++    ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTG----ESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTT----SSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCC----CCCCCCC
Confidence            33444433332 35678999999999999999999    9999984

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.08  E-value=0.00026  Score=38.12  Aligned_cols=28  Identities=18%  Similarity=0.278  Sum_probs=25.7

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKC   48 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C   48 (140)
                      .+|...|...+.|..|+++|++    ++||.|
T Consensus        14 ~~C~k~f~~~~~L~~H~~~H~~----~k~~~C   41 (41)
T 2ept_A           14 QECGKSFRQKGSLTLHERIHTG----SGPSSG   41 (41)
T ss_dssp             SSSCCEESSHHHHHHHGGGCCC----CSCSCC
T ss_pred             CCCCCCcCCHHHHHHHHHHhCC----CCCcCC
Confidence            5678999999999999999999    999987

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.07  E-value=0.00037  Score=38.52  Aligned_cols=41  Identities=5%  Similarity=-0.149  Sum_probs=31.0

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |+..|...+-. +.+|...|...+.|..|+++|++    ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG----ERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTC----CCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCC----CCCCCCC
Confidence            33444433322 35678999999999999999999    9999996

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.06  E-value=0.00055  Score=36.95  Aligned_cols=29  Identities=21%  Similarity=0.239  Sum_probs=26.0

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCccccc
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKC   48 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C   48 (140)
                      +.+|...|...+.|..|+++|++    ++||.|
T Consensus        14 C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C   42 (42)
T 2eos_A           14 CEICGTRFRHLQTLKSHLRIHTG----SGPSSG   42 (42)
T ss_dssp             CSSSCCCBSSHHHHHHHTTTTSC----CSSTTC
T ss_pred             CCCCCCccCCHHHHHHHHHhcCC----CCCCCC
Confidence            35678999999999999999999    999987

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.03  E-value=0.00048  Score=38.02  Aligned_cols=41  Identities=10%  Similarity=-0.091  Sum_probs=31.1

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |...|...+-. +.+|...|...+.|..|+++|++    ++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSR----EKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHH----TTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCC----CCCCCCC
Confidence            33444433333 34578999999999999999999    9999996

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.98  E-value=0.00059  Score=37.22  Aligned_cols=41  Identities=5%  Similarity=-0.142  Sum_probs=30.6

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |+..|...+.. +.+|...|.....|..|+++|++    ++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR----KSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCC----CCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCC----CCCCCCC
Confidence            33344433332 34678999999999999999999    9999984

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.94  E-value=0.00049  Score=37.87  Aligned_cols=41  Identities=12%  Similarity=-0.043  Sum_probs=31.2

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |...|...+.. +.+|...|...+.|..|+++|++    ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTG----KKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCC----CCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCC----CCCCCCC
Confidence            34444443333 35678999999999999999999    9999996

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.94  E-value=0.00045  Score=37.62  Aligned_cols=41  Identities=5%  Similarity=-0.142  Sum_probs=30.9

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |...|...+... .+|...|...+.|..|+++|++    ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSG----QSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSS----SCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCC----CCCCCCC
Confidence            334444433333 4678999999999999999999    9999984

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=96.90  E-value=0.00058  Score=36.72  Aligned_cols=28  Identities=14%  Similarity=0.112  Sum_probs=25.6

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKC   48 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C   48 (140)
                      .+|...|...+.|..|+++|++    ++||.|
T Consensus        15 ~~C~k~f~~~~~l~~H~~~H~~----~k~~~C   42 (42)
T 2epc_A           15 GQCGKSFTQRGSLAVHQRSCSQ----SGPSSG   42 (42)
T ss_dssp             SSSCCEESSHHHHHHHHHHTTC----CCCCCC
T ss_pred             CCCCcccCCHHHHHHHhhhcCC----CCCCCC
Confidence            4678999999999999999999    999987

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.90  E-value=0.00038  Score=38.46  Aligned_cols=42  Identities=12%  Similarity=-0.068  Sum_probs=31.5

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCccccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCPK   50 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~   50 (140)
                      |+..|...+.. +.+|...|...+.|..|+++|++    ++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~----~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQ----ETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSS----CCSSSCCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCC----CCCCCCCC
Confidence            33444433332 35678999999999999999999    99999963

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.87  E-value=0.00051  Score=37.84  Aligned_cols=41  Identities=12%  Similarity=-0.140  Sum_probs=31.1

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |+..|...+-. +.+|...|.....|..|+++|++    ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER----TDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHH----SCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCC----CCCCCCC
Confidence            34444433332 35678999999999999999999    9999986

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.83  E-value=0.00054  Score=36.91  Aligned_cols=28  Identities=14%  Similarity=0.095  Sum_probs=25.7

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKC   48 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C   48 (140)
                      .+|...|...+.|..|+++|++    ++||.|
T Consensus        15 ~~C~k~f~~~~~L~~H~~~H~~----~~~~~C   42 (42)
T 2en2_A           15 ETCGARFVQVAHLRAHVLIHTG----SGPSSG   42 (42)
T ss_dssp             TTTCCEESSHHHHHHHTHHHHS----CCSSCC
T ss_pred             CCcChhhCCHHHHHHHHHHcCC----CCCCCC
Confidence            4678999999999999999999    999987

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.81  E-value=0.00029  Score=48.90  Aligned_cols=29  Identities=28%  Similarity=0.369  Sum_probs=26.1

Q ss_pred             hhcCCCCCCccccccccCcccCCchhHhhhccc
Q 044394           35 IHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRS   67 (140)
Q Consensus        35 ~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~   67 (140)
                      .|+|    ++||.|..|++.|.+...|..|.+.
T Consensus        44 d~tG----ekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPG----GGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGG----GGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCC----CcceEcccCcchhCCHHHHHHHHhh
Confidence            4566    9999999999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=96.65  E-value=0.0012  Score=33.89  Aligned_cols=27  Identities=7%  Similarity=0.007  Sum_probs=24.5

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPYK   47 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~   47 (140)
                      .+|...|...+.|..|+++|++    ++||.
T Consensus         6 ~~C~k~F~~~~~L~~H~~~H~~----~~~~~   32 (33)
T 1rim_A            6 PECPKRFMRSDHLSKHITLHEL----LGEER   32 (33)
T ss_dssp             SSSCCCCSSHHHHHHHHHHHTT----TCCCC
T ss_pred             CCCCchhCCHHHHHHHHHHhCC----CCCCC
Confidence            4678999999999999999999    99985

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.55  E-value=0.0018  Score=35.25  Aligned_cols=41  Identities=10%  Similarity=-0.146  Sum_probs=30.7

Q ss_pred             cccCCCCCCCCC-CCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNPN-NVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |...|...+... .+|...|...+.|..|+++|++    ++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~----~k~~~~g   44 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAG----VSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSS----CSCCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcC----CCCCCCC
Confidence            344444443333 4678999999999999999999    9999873

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=96.46  E-value=0.0014  Score=34.69  Aligned_cols=30  Identities=7%  Similarity=-0.095  Sum_probs=26.2

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      +.+|...|...+.|..|+++|++    ++||.+.
T Consensus         9 C~~C~k~f~~~~~L~~H~~~H~~----~k~~~~~   38 (39)
T 1njq_A            9 CSFCKREFRSAQALGGHMNVHRR----DRARLRL   38 (39)
T ss_dssp             CTTTCCEESSHHHHHHHHHTTCC----SCTTTTC
T ss_pred             CCCCCcccCCHHHHHHHHHHcCC----Cccceec
Confidence            35678999999999999999999    9999863

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.44  E-value=0.001  Score=42.12  Aligned_cols=30  Identities=10%  Similarity=-0.019  Sum_probs=27.1

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      ..+|...|.....|..|+++|++    ++||.|.
T Consensus        65 C~~C~k~f~~~~~L~~H~~~H~~----~k~~~C~   94 (95)
T 2ej4_A           65 CPREGKSFKAKYKLVNHIRVHTG----EKSGPSS   94 (95)
T ss_dssp             CSSTTCCCSSHHHHHHHHHHHHT----CCCCSSC
T ss_pred             CCCCCcccCCHHHHHHHHHhcCC----CCCCCCC
Confidence            45678999999999999999999    9999986

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.00  E-value=0.0059  Score=33.39  Aligned_cols=42  Identities=12%  Similarity=-0.040  Sum_probs=29.7

Q ss_pred             cccCCCCCCCC-CCCCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394            5 HVQDKNPGKNP-NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      |...|...+-. +.+|...|...+.|..|+++|++   .++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~---~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR---GVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCS---CCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCC---CCCCCCCC
Confidence            44444443333 35678999999999999988764   16899986

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.45  E-value=0.0061  Score=31.76  Aligned_cols=26  Identities=4%  Similarity=-0.057  Sum_probs=23.3

Q ss_pred             CCCCcCCCCchHHHHhhhhcCCCCCCcccc
Q 044394           18 VQNPNRKENQDVEYDGRIHSHPCKKYGPYK   47 (140)
Q Consensus        18 ~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~   47 (140)
                      .|...|...+.|..|+++|++    ++||.
T Consensus        13 ~C~k~f~~~~~L~~H~~~H~~----~k~~~   38 (38)
T 1bhi_A           13 GCGQRFTNEDHLAVHKHKHEM----TLKFG   38 (38)
T ss_dssp             TTCCEESSHHHHHHHHHHHHT----TTTTC
T ss_pred             CCCcccCCHHHHHHHHHHhCC----CCCCC
Confidence            388999999999999999999    98873

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=95.34  E-value=0.0077  Score=34.27  Aligned_cols=28  Identities=4%  Similarity=0.000  Sum_probs=24.5

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCcccc
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYK   47 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~   47 (140)
                      +.+|...|...+.|..|+++|++    ++||.
T Consensus        27 C~~C~k~f~~~~~L~~H~~~H~~----~kp~~   54 (54)
T 1yui_A           27 CPICYAVIRQSRNLRRHLELRHF----AKPGV   54 (54)
T ss_dssp             CTTTCCEESSHHHHHHHHHHHTT----TSCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHhcc----CCCCC
Confidence            35678999999999999999999    99874

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.23  E-value=0.0078  Score=32.69  Aligned_cols=29  Identities=10%  Similarity=0.092  Sum_probs=23.7

Q ss_pred             CCCCCCCCCCCCcCCCCchHHHHhhhhcC
Q 044394           10 NPGKNPNNVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        10 ~~~~~~~~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      .|-+|+...|..+|..++.|.+|+++|++
T Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            8 ILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             CCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            34455444589999999999999999998

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=95.04  E-value=0.02  Score=28.15  Aligned_cols=22  Identities=9%  Similarity=0.161  Sum_probs=20.1

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      ..|...|...+.|..|+++|++
T Consensus         8 ~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            8 SYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             TTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CCCCcccCCHhHHHHHHHHhcC
Confidence            3789999999999999999998

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=94.95  E-value=0.017  Score=34.96  Aligned_cols=49  Identities=12%  Similarity=0.156  Sum_probs=37.8

Q ss_pred             CCCcCCCCchHHHHh-hhhcCCCC--CCcccccc--ccCcccCCchhHhhhccc
Q 044394           19 QNPNRKENQDVEYDG-RIHSHPCK--KYGPYKCP--KCNGAFGTSQAFAAHMRS   67 (140)
Q Consensus        19 ~~~~~~k~s~L~~H~-r~Htg~h~--~ekP~~C~--~Cgk~F~~~~~L~~H~r~   67 (140)
                      |+..|.....|..|+ ..|.+.-.  ...+|.|.  .|++.+.....|..|++.
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            567788889999998 57887210  01289996  799999999999999875

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=94.69  E-value=0.042  Score=27.07  Aligned_cols=21  Identities=14%  Similarity=0.080  Sum_probs=19.6

Q ss_pred             CCCCcCCCCchHHHHhhhhcC
Q 044394           18 VQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        18 ~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      .|...|...+.|..|+++|++
T Consensus        10 ~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A           10 GCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             TCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCCCccCCHHHHHHHHHHccC
Confidence            688999999999999999998

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=94.68  E-value=0.002  Score=32.76  Aligned_cols=26  Identities=0%  Similarity=-0.242  Sum_probs=22.5

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCccc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGPY   46 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~   46 (140)
                      .+|...|...+.|..|+++|++    ++||
T Consensus         6 ~~C~k~f~~~~~L~~H~~~H~~----~kp~   31 (32)
T 2kfq_A            6 PACPKRFMRSDALSKHIKTAFI----VVAL   31 (32)
T ss_dssp             SSSCTTHHHHHTTSSSTTSSSS----SSSC
T ss_pred             CCCCcccCCHHHHHHHHHHHcc----CCCC
Confidence            4677888889999999999998    9987

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=94.67  E-value=0.016  Score=29.22  Aligned_cols=25  Identities=4%  Similarity=-0.223  Sum_probs=22.0

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGP   45 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP   45 (140)
                      .+|...|...+.|..|+++|++    ++|
T Consensus        11 ~~C~k~f~~~~~L~~H~~~h~~----~kp   35 (35)
T 2elx_A           11 ALCLKKFVSSIRLRSHIREVHG----AAQ   35 (35)
T ss_dssp             SSSCCEESSHHHHHHHHHHTSC----TTC
T ss_pred             CCCcchhCCHHHHHHHHHHHcC----CCC
Confidence            5678999999999999999998    765

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=94.26  E-value=0.024  Score=28.68  Aligned_cols=25  Identities=4%  Similarity=-0.001  Sum_probs=21.9

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGP   45 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP   45 (140)
                      .+|...|...+.|..|+++|++    ++|
T Consensus        11 ~~C~k~f~~~~~l~~H~~~H~~----~~~   35 (35)
T 1srk_A           11 RICLSAFTTKANCARHLKVHTD----TLS   35 (35)
T ss_dssp             SSSCCEESSHHHHHHHHGGGTS----CCC
T ss_pred             CCCCcccCCHHHHHHHHHHcCC----CCC
Confidence            4678999999999999999998    765

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.13  E-value=0.019  Score=29.49  Aligned_cols=25  Identities=8%  Similarity=-0.048  Sum_probs=22.2

Q ss_pred             CCCCCcCCCCchHHHHhhhhcCCCCCCcc
Q 044394           17 NVQNPNRKENQDVEYDGRIHSHPCKKYGP   45 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg~h~~ekP   45 (140)
                      .+|...|...+.|..|+++|++    ++|
T Consensus        13 ~~C~k~f~~~~~l~~H~~~h~~----~kp   37 (37)
T 2elo_A           13 PVCEKSFSEDRLIKSHIKTNHP----EVS   37 (37)
T ss_dssp             TTTTEECSSHHHHHHHHHHHCS----SCC
T ss_pred             CCCCCccCCHHHHHHHHHHHcC----CCC
Confidence            5678999999999999999998    775

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=93.91  E-value=0.058  Score=25.66  Aligned_cols=23  Identities=0%  Similarity=-0.034  Sum_probs=20.1

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      +..|...|...+.|..|+++|++
T Consensus         5 C~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            5 CQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCCCCCccCCHHHHHHHHHHHcc
Confidence            34678899999999999999988

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=93.91  E-value=0.025  Score=29.27  Aligned_cols=21  Identities=10%  Similarity=-0.056  Sum_probs=19.4

Q ss_pred             CCCCcCCCCchHHHHhhhhcC
Q 044394           18 VQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        18 ~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      .|...|...+.|..|+++|++
T Consensus        15 ~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A           15 GCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             TCCCEESCHHHHHHHHHHHHT
T ss_pred             CCCCccCCHHHHHHHHHhcCC
Confidence            388999999999999999998

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=93.85  E-value=0.041  Score=26.15  Aligned_cols=23  Identities=13%  Similarity=0.121  Sum_probs=20.3

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      +.+|...|...+.|..|+++|++
T Consensus         5 C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            5 CEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CCCCCcccCCHHHHHHHHHHhcC
Confidence            35678999999999999999987

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=93.64  E-value=0.045  Score=25.63  Aligned_cols=22  Identities=14%  Similarity=0.226  Sum_probs=19.6

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      .+|...|...+.|..|+++|++
T Consensus         5 ~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            5 GLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             SSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CCCCCcCCCHHHHHHHHHHcCC
Confidence            4678899999999999999986

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=93.63  E-value=0.044  Score=26.11  Aligned_cols=22  Identities=5%  Similarity=-0.040  Sum_probs=19.7

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      .+|...|...+.|..|+++|++
T Consensus         6 ~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            6 PECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             SSSSCEESCSHHHHHHHTGGGS
T ss_pred             CCCCchhCCHHHHHHHHHHhcC
Confidence            4678899999999999999987

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.30  E-value=0.053  Score=27.38  Aligned_cols=23  Identities=9%  Similarity=0.117  Sum_probs=20.3

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      +.+|...|.....|..|+++|++
T Consensus        12 C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A           12 CDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             cCcCCCCcCchHHHHHHHHHhcC
Confidence            35678999999999999999998

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=93.01  E-value=0.075  Score=24.99  Aligned_cols=22  Identities=9%  Similarity=0.037  Sum_probs=19.5

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      ..|...|...+.|..|+++|++
T Consensus         6 ~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            6 PHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             SSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCCCcccCCHHHHHHHHHHhcc
Confidence            4578899999999999999987

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.95  E-value=0.044  Score=27.85  Aligned_cols=22  Identities=14%  Similarity=0.170  Sum_probs=19.8

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      .+|...|...+.|..|+++|++
T Consensus        13 ~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A           13 HICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             SSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCccCCHHHHHHHHHHhcC
Confidence            5678999999999999999987

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=92.72  E-value=0.046  Score=25.88  Aligned_cols=22  Identities=18%  Similarity=0.125  Sum_probs=19.5

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      ..|+..|.....|..|+++|++
T Consensus         6 ~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            6 RECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             TTTSCEESCHHHHHHHHHHHHT
T ss_pred             CCCCCccCChhHHHHHHHHhcC
Confidence            4578889999999999999988

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.69  E-value=0.054  Score=27.35  Aligned_cols=22  Identities=9%  Similarity=-0.020  Sum_probs=19.8

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      .+|+..|...+.|..|+++|++
T Consensus        13 ~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A           13 PQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             SSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCcccCCHHHHHHHHHHccC
Confidence            4678899999999999999988

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.55  E-value=0.045  Score=31.53  Aligned_cols=26  Identities=35%  Similarity=0.728  Sum_probs=23.1

Q ss_pred             ccccccccCcccCCchhHhhhccccc
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      .+|.|+.|+..|.....|..|++.--
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycC   36 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCC   36 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHC
T ss_pred             CceeCCcccccccchHHHHhhhhhcC
Confidence            67999999999999999999997533

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.53  E-value=0.062  Score=27.25  Aligned_cols=22  Identities=23%  Similarity=0.179  Sum_probs=19.8

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      .+|...|.....|..|+++|++
T Consensus        13 ~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A           13 EYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             TTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCceeCCHHHHHHHHHHhCC
Confidence            4678899999999999999988

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=92.41  E-value=0.066  Score=25.43  Aligned_cols=22  Identities=5%  Similarity=-0.076  Sum_probs=19.5

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      ..|...|.....|..|+++|++
T Consensus         7 ~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            7 DYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             TTTCCEESCHHHHHHHHHTTCC
T ss_pred             CCCCcccCCHHHHHHHHHHhcc
Confidence            4578889999999999999987

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.01  E-value=0.072  Score=26.97  Aligned_cols=22  Identities=9%  Similarity=0.111  Sum_probs=19.8

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      .+|...|...+.|..|+++|++
T Consensus        13 ~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A           13 SLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCchhCCHHHHHHHHHHhcc
Confidence            4678999999999999999987

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.00  E-value=0.064  Score=25.38  Aligned_cols=23  Identities=17%  Similarity=0.159  Sum_probs=19.5

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      +.+|...|...+.|..|+++|++
T Consensus         6 C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            6 CSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CCCCCcccCCHHHHHHHHHhcCC
Confidence            35678899999999999999875

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.75  E-value=0.084  Score=26.88  Aligned_cols=22  Identities=14%  Similarity=-0.029  Sum_probs=19.5

Q ss_pred             CCCCCcCCCC-chHHHHhhhhcC
Q 044394           17 NVQNPNRKEN-QDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~-s~L~~H~r~Htg   38 (140)
                      .+|...|... +.|..|+++|++
T Consensus        13 ~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A           13 PYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             SSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCChhhccCHHHHHHHHHhcCC
Confidence            4678899998 999999999987

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=91.61  E-value=0.23  Score=25.07  Aligned_cols=22  Identities=5%  Similarity=-0.002  Sum_probs=19.5

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      .+|...|...+.|..|+++|++
T Consensus        15 ~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A           15 PDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             TTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCCcccCcHHHHHHHHHHhcc
Confidence            4568899999999999999987

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=91.59  E-value=0.15  Score=24.27  Aligned_cols=22  Identities=18%  Similarity=0.110  Sum_probs=19.2

Q ss_pred             CCCCCcCCCCchHHHH-hhhhcC
Q 044394           17 NVQNPNRKENQDVEYD-GRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H-~r~Htg   38 (140)
                      ..|...|...+.|..| +++|++
T Consensus         6 ~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            6 GLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             TTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             cccCcccCChHHHHHHHHHHccC
Confidence            4578899999999999 789987

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=91.11  E-value=0.21  Score=30.23  Aligned_cols=22  Identities=5%  Similarity=-0.011  Sum_probs=20.2

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      ..|...|...+.|..|+++|++
T Consensus        17 ~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A           17 GLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             TTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CCCCCccCCHHHHHhhhhhhCC
Confidence            5678999999999999999998

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=90.66  E-value=0.12  Score=28.22  Aligned_cols=21  Identities=10%  Similarity=-0.020  Sum_probs=19.7

Q ss_pred             CCCCcCCCCchHHHHhhhhcC
Q 044394           18 VQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        18 ~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      .|...|...+.|..|+++|++
T Consensus        25 ~C~k~F~~~~~L~~H~~~H~~   45 (47)
T 1ncs_A           25 GCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             TCCCEECSSSSHHHHHHHHTT
T ss_pred             CCCCccCCHHHHHHHHHHccC
Confidence            588999999999999999998

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=89.80  E-value=0.12  Score=33.50  Aligned_cols=33  Identities=21%  Similarity=0.551  Sum_probs=26.8

Q ss_pred             ccccccccCcccCCchhHhhhcccccCCCChHHHHH
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKR   79 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~   79 (140)
                      .-..|..||+.|.   .|.+|...|.|..|.+++.+
T Consensus        20 d~iiClecGK~fK---~LkRHL~~~hgltpeeYR~k   52 (87)
T 2jsp_A           20 DHIVCLECGGSFK---SLKRHLTTHHSMTPEEYREK   52 (87)
T ss_dssp             SCEECTBTCCEES---BHHHHHHHTTCSCHHHHHHH
T ss_pred             CceEecccchhhH---HHHHHHHHccCCCHHHHHHH
Confidence            3467999999998   47799999889888887653

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=88.31  E-value=0.18  Score=27.72  Aligned_cols=22  Identities=14%  Similarity=0.190  Sum_probs=20.1

Q ss_pred             CCCCCcCCCCchHHHHhh-hhcC
Q 044394           17 NVQNPNRKENQDVEYDGR-IHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r-~Htg   38 (140)
                      .+|...|.....|..|++ +|++
T Consensus        11 ~~C~k~F~~~~~L~~H~~~~H~~   33 (48)
T 3iuf_A           11 DICGKRYKNRPGLSYHYAHSHLA   33 (48)
T ss_dssp             TTTCCEESSHHHHHHHHHHSSCC
T ss_pred             CCcCcccCCHHHHHHHhhhhcCC
Confidence            468899999999999999 9998

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=81.91  E-value=0.91  Score=30.85  Aligned_cols=53  Identities=17%  Similarity=0.149  Sum_probs=38.3

Q ss_pred             CCCCCCCCcCCCCchHHHHh--hhhc---------------------------CCCCCCccccccccCcccCCchhHhhh
Q 044394           14 NPNNVQNPNRKENQDVEYDG--RIHS---------------------------HPCKKYGPYKCPKCNGAFGTSQAFAAH   64 (140)
Q Consensus        14 ~~~~~~~~~~~k~s~L~~H~--r~Ht---------------------------g~h~~ekP~~C~~Cgk~F~~~~~L~~H   64 (140)
                      ..+.+|+-.|...+.+..|.  +.|.                           ..+.+...|.|..|..+|.+...+..|
T Consensus        33 ~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~~H  112 (127)
T 1zu1_A           33 TQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAESH  112 (127)
T ss_dssp             SEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHHHH
T ss_pred             CcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHHHH
Confidence            45678888888777777776  2220                           112235678899999999999999988


Q ss_pred             cc
Q 044394           65 MR   66 (140)
Q Consensus        65 ~r   66 (140)
                      ..
T Consensus       113 ~~  114 (127)
T 1zu1_A          113 YI  114 (127)
T ss_dssp             HT
T ss_pred             HC
Confidence            75

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	140
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	9e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.003
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.004

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 32.8 bits (75), Expect = 9e-04
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 46 YKCPKCNGAFGTSQAFAAHMRSHYK 70
          Y C  C   F ++QA   HM  H +
Sbjct: 6  YTCSFCKREFRSAQALGGHMNVHRR 30

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.1 bits (71), Expect = 0.003
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 45 PYKCPKCNGAFGTSQAFAAHMRSH 68
          PY C +C  AF  S     H R H
Sbjct: 7  PYGCVECGKAFSRSSILVQHQRVH 30

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.0 bits (71), Expect = 0.004
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 45 PYKCPKCNGAFGTSQAFAAHMRSH 68
          P++C  C   F  S     H+R+H
Sbjct: 3  PFQCRICMRNFSRSDHLTTHIRTH 26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.32
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.2
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.2
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.16
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.12
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.08
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.07
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.06
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.02
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.97
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.88
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.87
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.74
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.72
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.68
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.67
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.52
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.49
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.4
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.36
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.13
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.04
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.92
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.77
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.74
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.71
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.45
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.33
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.29
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.23
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.22
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.21
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.19
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.18
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.98
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.97
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.93
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.9
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.81
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.73
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	96.69
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.68
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.67
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.43
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	96.35
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.17
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.16
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.89
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	95.88
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.69
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	95.63
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	95.4
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.34
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	95.1
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	94.86
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.81
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.69
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	94.66
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	94.29
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.12
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	93.9
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.18
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	92.71
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	92.64
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.54
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.28
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	91.71
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	91.4
d1y0jb1	36	U-shaped transcription factor, different fingers {	86.07
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	84.63
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	84.5
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	83.01
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	82.66

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.4e-13  Score=76.16  Aligned_cols=37  Identities=24%  Similarity=0.449  Sum_probs=34.7

Q ss_pred             HHhhhhcCCCCCCccccccccCcccCCchhHhhhcccccCC
Q 044394           31 YDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        31 ~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      +|+++|++    ++||.|..||++|.+.+.|..|+++|+||
T Consensus         2 rH~~~Ht~----ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRE----RRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCC----SCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCC----CCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            47788888    99999999999999999999999999996

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2e-12  Score=69.15  Aligned_cols=32  Identities=31%  Similarity=0.542  Sum_probs=29.7

Q ss_pred             CCCCccccccccCcccCCchhHhhhcccccCC
Q 044394           40 CKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        40 h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      |+|++||.|..||++|.+.+.|..|+++|+||
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            34499999999999999999999999999986

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.2e-12  Score=75.16  Aligned_cols=46  Identities=20%  Similarity=0.404  Sum_probs=44.6

Q ss_pred             CCCcCCCCchHHHHhhhhcCCCCCCccccccccCcccCCchhHhhhcccc
Q 044394           19 QNPNRKENQDVEYDGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSH   68 (140)
Q Consensus        19 ~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~H   68 (140)
                      |+.+|.....|..|+++|++    ++||.|..|+++|.+.+.|..|+++|
T Consensus         8 Cgk~F~~~~~l~~H~~~Ht~----ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           8 CGKSFTHKSQRDRHMSMHLG----LRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             TSCEESSHHHHHHHHHHHSC----CCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CCCeECCHHHhHHHhhcccc----ccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            88999999999999999999    99999999999999999999999887

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=4.5e-12  Score=69.52  Aligned_cols=35  Identities=29%  Similarity=0.653  Sum_probs=32.0

Q ss_pred             HhhhhcCCCCCCccccccccCcccCCchhHhhhcccccC
Q 044394           32 DGRIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        32 H~r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      |.|+|++    ++||.|..|+++|.+.++|..|+++|.+
T Consensus         2 h~R~HTg----eKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTG----IKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCC----SSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCC----ccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            5677777    9999999999999999999999999975

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1e-11  Score=67.14  Aligned_cols=33  Identities=27%  Similarity=0.468  Sum_probs=30.1

Q ss_pred             CCCCccccccccCcccCCchhHhhhcccccCCC
Q 044394           40 CKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        40 h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      |+|++||.|..|++.|.+.++|.+|+++|+.+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCcC
Confidence            455999999999999999999999999999853

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.4e-11  Score=67.05  Aligned_cols=34  Identities=26%  Similarity=0.577  Sum_probs=31.1

Q ss_pred             hhhcCCCCCCccccccccCcccCCchhHhhhcccccCC
Q 044394           34 RIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        34 r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      |+|+|    ++||.|..|+++|.+.+.|..|+++|.++
T Consensus         1 R~HTg----ekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTG----EKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCC----CCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCC----CCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            45666    99999999999999999999999999875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.07  E-value=1.9e-11  Score=63.44  Aligned_cols=29  Identities=28%  Similarity=0.587  Sum_probs=27.9

Q ss_pred             ccccccccCcccCCchhHhhhcccccCCC
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      +||.|+.|+++|.+.++|..|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            69999999999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.7e-11  Score=62.81  Aligned_cols=29  Identities=24%  Similarity=0.660  Sum_probs=27.8

Q ss_pred             ccccccccCcccCCchhHhhhcccccCCC
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      |||.|..|+++|.+.++|..|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            69999999999999999999999999985

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.6e-11  Score=67.92  Aligned_cols=34  Identities=21%  Similarity=0.485  Sum_probs=31.9

Q ss_pred             CccccccccCcccCCchhHhhhcc-cccCCCChHH
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMR-SHYKYETSAE   76 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r-~Ht~ekp~~~   76 (140)
                      ++||.|..||++|.+.++|..|++ +|++++||.|
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C   37 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC   37 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCC
Confidence            899999999999999999999975 8999999975

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=2e-11  Score=62.78  Aligned_cols=28  Identities=29%  Similarity=0.694  Sum_probs=27.0

Q ss_pred             CccccccccCcccCCchhHhhhcccccC
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      ||||.|..|+++|.++++|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999987

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=2.8e-11  Score=69.63  Aligned_cols=42  Identities=12%  Similarity=0.313  Sum_probs=36.9

Q ss_pred             CchHHHHhhhhcCCCCCCccccccc--cCcccCCchhHhhhcccccCCC
Q 044394           26 NQDVEYDGRIHSHPCKKYGPYKCPK--CNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        26 ~s~L~~H~r~Htg~h~~ekP~~C~~--Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      .+.|..|+. |++    ++||.|..  |+++|.+.++|..|+++|+|++
T Consensus         4 ~~~l~~h~~-h~g----ekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           4 RGSIDKYVK-EMP----DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CSSGGGSCE-EET----TTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             cchhcchhh-ccC----CCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            345677774 888    99999976  9999999999999999999985

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.3e-10  Score=58.54  Aligned_cols=26  Identities=38%  Similarity=0.807  Sum_probs=24.9

Q ss_pred             ccccccccCcccCCchhHhhhccccc
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      |||+|..||++|.+.+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999985

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.4e-10  Score=62.05  Aligned_cols=33  Identities=33%  Similarity=0.632  Sum_probs=28.1

Q ss_pred             hhhcCCCCCCccccccccCcccCCchhHhhhcc-cccC
Q 044394           34 RIHSHPCKKYGPYKCPKCNGAFGTSQAFAAHMR-SHYK   70 (140)
Q Consensus        34 r~Htg~h~~ekP~~C~~Cgk~F~~~~~L~~H~r-~Ht~   70 (140)
                      |+|+|    ++||.|+.|+++|.+.++|..|++ .|++
T Consensus         1 R~HTg----ekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSG----EKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSC----CCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCC----CCCEeCCCCcccccchHHHHHHcccccCC
Confidence            35666    999999999999999999999975 4554

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.3e-09  Score=56.66  Aligned_cols=28  Identities=29%  Similarity=0.600  Sum_probs=26.6

Q ss_pred             ccccccc--cCcccCCchhHhhhcccccCC
Q 044394           44 GPYKCPK--CNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        44 kP~~C~~--Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      |||.|+.  |+++|.+.++|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6999988  999999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.3e-09  Score=56.18  Aligned_cols=29  Identities=28%  Similarity=0.602  Sum_probs=26.8

Q ss_pred             cccccc--ccCcccCCchhHhhhcccccCCC
Q 044394           44 GPYKCP--KCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        44 kP~~C~--~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      +||.|+  .|+++|.+.++|..|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            699995  59999999999999999999985

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.6e-09  Score=56.36  Aligned_cols=28  Identities=25%  Similarity=0.572  Sum_probs=26.3

Q ss_pred             ccccccc--cCcccCCchhHhhhcccccCC
Q 044394           44 GPYKCPK--CNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        44 kP~~C~~--Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      |||.|+.  |+++|.+.++|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6999976  999999999999999999986

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.6e-10  Score=66.68  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=34.2

Q ss_pred             CccccccccCcccCCchhHhhhcccccCCCChHHHHHHHH
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSAERKRRLS   82 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~~~~~~~~   82 (140)
                      ||||.|. ||++|.....|..|+++|++++||.+..+...
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~   39 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKK   39 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCE
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCE
Confidence            6899995 99999999999999999999999987555443

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=2.4e-08  Score=52.51  Aligned_cols=29  Identities=31%  Similarity=0.654  Sum_probs=26.8

Q ss_pred             Cccccccc--cCcccCCchhHhhhcccccCC
Q 044394           43 YGPYKCPK--CNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        43 ekP~~C~~--Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      |+||.|..  |+++|.+.++|.+|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999977  999999999999999999874

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=7e-09  Score=56.05  Aligned_cols=31  Identities=23%  Similarity=0.574  Sum_probs=22.3

Q ss_pred             ccccc--cCcccCCchhHhhhcccccCCCChHH
Q 044394           46 YKCPK--CNGAFGTSQAFAAHMRSHYKYETSAE   76 (140)
Q Consensus        46 ~~C~~--Cgk~F~~~~~L~~H~r~Ht~ekp~~~   76 (140)
                      |.|+.  |+++|.+..+|.+|+++|+|++||.|
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C   34 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC   34 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeC
Confidence            55654  77777777777777777777777654

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=1.2e-08  Score=52.49  Aligned_cols=27  Identities=37%  Similarity=0.849  Sum_probs=25.3

Q ss_pred             ccccccc--cCcccCCchhHhhhcccccC
Q 044394           44 GPYKCPK--CNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        44 kP~~C~~--Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      |||.|..  |+++|.+.++|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6999977  99999999999999999986

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3.4e-08  Score=50.32  Aligned_cols=26  Identities=38%  Similarity=0.846  Sum_probs=24.2

Q ss_pred             ccccccc--cCcccCCchhHhhhccccc
Q 044394           44 GPYKCPK--CNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        44 kP~~C~~--Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      +||.|+.  |+++|.+.++|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6999977  9999999999999999986

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=8.4e-08  Score=46.42  Aligned_cols=26  Identities=35%  Similarity=0.735  Sum_probs=24.6

Q ss_pred             cccccccCcccCCchhHhhhcccccC
Q 044394           45 PYKCPKCNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      |++|+.|++.|++...|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            67899999999999999999999986

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3e-07  Score=47.48  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=30.0

Q ss_pred             CccccccccCcccCCchhHhhhcccccCCCChH
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYKYETSA   75 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ekp~~   75 (140)
                      .+...|..||+.|....+|.+|...|++++||.
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            356789999999999999999999999999973

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=4.6e-07  Score=45.03  Aligned_cols=27  Identities=26%  Similarity=0.571  Sum_probs=25.4

Q ss_pred             CccccccccCcccCCchhHhhhccccc
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      |+||.|..||+.|.++....+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999885

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=9.1e-07  Score=47.44  Aligned_cols=28  Identities=14%  Similarity=0.230  Sum_probs=26.2

Q ss_pred             CCCCcCCCCchHHHHhhhhcCCCCCCcccccc
Q 044394           18 VQNPNRKENQDVEYDGRIHSHPCKKYGPYKCP   49 (140)
Q Consensus        18 ~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~C~   49 (140)
                      -|+..|.++++|.+|+++|++    ++||.|+
T Consensus         8 ~C~k~F~~~~~L~~H~r~Htg----ekpy~C~   35 (36)
T d2dlka2           8 ACGKSFNFKKHLKEHMKLHSD----TRDYICE   35 (36)
T ss_dssp             TTCCEESSHHHHHHHHHHHHT----SCCCSCC
T ss_pred             CCCCeeCChhHhccccCeeCC----CCCEeCC
Confidence            378999999999999999999    9999996

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.2e-06  Score=42.09  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=24.6

Q ss_pred             cccccccCcccCCchhHhhhcccccCC
Q 044394           45 PYKCPKCNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      -+.|..||++|..++.|++|+.+|+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            357999999999999999999999985

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4.9e-06  Score=45.24  Aligned_cols=30  Identities=13%  Similarity=0.195  Sum_probs=26.4

Q ss_pred             CCCCCcCCCCchHHHHhh-hhcCCCCCCccccccc
Q 044394           17 NVQNPNRKENQDVEYDGR-IHSHPCKKYGPYKCPK   50 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r-~Htg~h~~ekP~~C~~   50 (140)
                      ..|...|..+++|.+|++ +|++    ++||.|..
T Consensus         9 ~~Cgk~F~~~~~L~~H~r~~Ht~----ekpy~C~i   39 (39)
T d2epsa1           9 QSCGKGFSRPDHLNGHIKQVHTS----ERPHKCQV   39 (39)
T ss_dssp             SSSCCEESSHHHHHHHHHHTSCC----CCCCCSSS
T ss_pred             CCCCCCcCChHHhhccCcCccCC----CcCcCCcC
Confidence            567899999999999975 7999    99999963

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=5.9e-06  Score=40.73  Aligned_cols=29  Identities=34%  Similarity=0.551  Sum_probs=26.8

Q ss_pred             CccccccccCcccCCchhHhhhcccccCC
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      ++||+|+.|..+-..++.|..|.+.|+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            58999999999999999999999999983

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=4.3e-06  Score=42.12  Aligned_cols=29  Identities=34%  Similarity=0.659  Sum_probs=26.8

Q ss_pred             CccccccccCcccCCchhHhhhcccccCC
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      ++||.|+.|+..|.+...+.-|.+.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            58999999999999999999999998774

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=2.1e-05  Score=42.54  Aligned_cols=26  Identities=27%  Similarity=0.598  Sum_probs=23.5

Q ss_pred             CCCccccccccCcccCCchhHhhhcc
Q 044394           41 KKYGPYKCPKCNGAFGTSQAFAAHMR   66 (140)
Q Consensus        41 ~~ekP~~C~~Cgk~F~~~~~L~~H~r   66 (140)
                      ||-+||.|..|++.|-+...+.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            35899999999999999999999864

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=4.3e-05  Score=37.65  Aligned_cols=27  Identities=22%  Similarity=0.508  Sum_probs=23.3

Q ss_pred             ccccccCcccCCchhHhhhcccccCCC
Q 044394           46 YKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        46 ~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      |.|+.||.....++-|..|++.|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            678889998889999999999998864

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.29  E-value=6.8e-05  Score=37.90  Aligned_cols=23  Identities=13%  Similarity=0.121  Sum_probs=21.3

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      +.+|+.+|...++|.+|+++|+|
T Consensus         5 C~~C~k~F~~~~~L~~H~r~HTg   27 (29)
T d2adra1           5 CEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CTTTCCCBSCHHHHHHHHHTTTS
T ss_pred             CCCCCCCCCCchHcccccCcccC
Confidence            35789999999999999999999

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=5.4e-05  Score=36.50  Aligned_cols=26  Identities=27%  Similarity=0.561  Sum_probs=24.2

Q ss_pred             cccccCcccCCchhHhhhcccccCCC
Q 044394           47 KCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        47 ~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      +|+.|.+.|.+...|..|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999975

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.22  E-value=7.6e-05  Score=35.46  Aligned_cols=24  Identities=38%  Similarity=0.732  Sum_probs=22.2

Q ss_pred             ccccccCcccCCchhHhhhccccc
Q 044394           46 YKCPKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        46 ~~C~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      |+|..|.++|...+.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            689999999999999999999874

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00014  Score=36.73  Aligned_cols=23  Identities=4%  Similarity=-0.068  Sum_probs=21.2

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      +.+|+.+|..+++|.+|+++|++
T Consensus         5 C~~C~k~F~~~s~L~~H~r~Htg   27 (29)
T d1sp1a_           5 CPECPKRFMRSDHLSKHIKTHQN   27 (29)
T ss_dssp             CTTTTCCCSCSHHHHHHHHGGGC
T ss_pred             CCcCCCeecchHHhhhhcCccCC
Confidence            45789999999999999999999

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00013  Score=37.38  Aligned_cols=28  Identities=11%  Similarity=0.076  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCCcCCCCchHHHHhhhhcC
Q 044394           11 PGKNPNNVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        11 ~~~~~~~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      |-.|+-.-|+..|.++++|..|+++|+|
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htg   29 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCcccc
Confidence            5566666789999999999999999999

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.18  E-value=6.2e-05  Score=37.95  Aligned_cols=26  Identities=35%  Similarity=0.696  Sum_probs=23.3

Q ss_pred             cccccccCcccCCchhHhhhc-ccccC
Q 044394           45 PYKCPKCNGAFGTSQAFAAHM-RSHYK   70 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~-r~Ht~   70 (140)
                      ||.|..|++.|.++..|.+|+ ++|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            899999999999999999997 56765

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00013  Score=35.48  Aligned_cols=28  Identities=36%  Similarity=0.700  Sum_probs=25.3

Q ss_pred             CccccccccCcccCCchhHhhhcccccC
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      .+||+|..|..+-...+.|..|+++|..
T Consensus         1 vkp~kck~cdyaaadsssl~kh~rihs~   28 (28)
T d2dmda1           1 VKPYKCKTCDYAAADSSSLNKHLRIHSD   28 (28)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHSCC
T ss_pred             CCCcccccccchhcchhhHhhhhhcccC
Confidence            3799999999999999999999999863

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00035  Score=35.45  Aligned_cols=28  Identities=14%  Similarity=0.075  Sum_probs=24.1

Q ss_pred             CCCCCCCCCCCcCCCCchHHHHhhhhcC
Q 044394           11 PGKNPNNVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        11 ~~~~~~~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      |-.|+-.-|+++|.++++|.+|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            4556656689999999999999999998

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00014  Score=36.63  Aligned_cols=28  Identities=36%  Similarity=0.706  Sum_probs=24.2

Q ss_pred             ccccccc--cCcccCCchhHhhhc-ccccCC
Q 044394           44 GPYKCPK--CNGAFGTSQAFAAHM-RSHYKY   71 (140)
Q Consensus        44 kP~~C~~--Cgk~F~~~~~L~~H~-r~Ht~e   71 (140)
                      +||.|..  |.++|+..+.-..|+ |+|..+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            6999976  999999999999997 888753

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.90  E-value=0.00013  Score=35.84  Aligned_cols=25  Identities=32%  Similarity=0.836  Sum_probs=22.3

Q ss_pred             ccccccc--cCcccCCchhHhhhcccc
Q 044394           44 GPYKCPK--CNGAFGTSQAFAAHMRSH   68 (140)
Q Consensus        44 kP~~C~~--Cgk~F~~~~~L~~H~r~H   68 (140)
                      .||.|+.  |+++|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5899965  999999999999998876

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00032  Score=34.64  Aligned_cols=27  Identities=26%  Similarity=0.570  Sum_probs=23.4

Q ss_pred             ccccccccCcccCCchhHhhhccc-ccC
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRS-HYK   70 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~-Ht~   70 (140)
                      +||.|+.|......+++|..|++. |..
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            699999999999999999999876 443

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.73  E-value=0.00022  Score=35.17  Aligned_cols=28  Identities=21%  Similarity=0.558  Sum_probs=24.6

Q ss_pred             ccccccc--cCcccCCchhHhhhcccccCC
Q 044394           44 GPYKCPK--CNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        44 kP~~C~~--Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      +||.|..  |.+.|....+|.+|...|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5888844  999999999999999999885

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.00026  Score=35.37  Aligned_cols=22  Identities=14%  Similarity=0.110  Sum_probs=20.2

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      .+|+..|..+++|..|+++|+|
T Consensus         7 ~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           7 RICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             TTTCCEESCHHHHHHHHHHHHC
T ss_pred             CCCcCEecccccccccCCCccC
Confidence            4689999999999999999987

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00028  Score=35.11  Aligned_cols=26  Identities=19%  Similarity=0.590  Sum_probs=22.6

Q ss_pred             ccccccc--cCcccCCchhHhhhccccc
Q 044394           44 GPYKCPK--CNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        44 kP~~C~~--Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      +||.|..  |++++...++|..|++.+.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            6899966  9999999999999998643

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00028  Score=35.81  Aligned_cols=27  Identities=11%  Similarity=-0.060  Sum_probs=22.8

Q ss_pred             CCCCCCCCCCcCCCCchHHHHhhhhcC
Q 044394           12 GKNPNNVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        12 ~~~~~~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      -.|+-.-|+++|.++++|.+|+++|+|
T Consensus         3 ~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           3 FQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             EECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCceECcHHHcCccccccCC
Confidence            345445589999999999999999998

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.43  E-value=0.00059  Score=36.11  Aligned_cols=30  Identities=30%  Similarity=0.610  Sum_probs=26.9

Q ss_pred             CccccccccCcccCCchhHhhhcccccCCC
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYKYE   72 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~ek   72 (140)
                      .+.|.|..|++.|.+...|--|++.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            467999999999999999999999997765

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.00052  Score=34.49  Aligned_cols=28  Identities=21%  Similarity=0.230  Sum_probs=23.1

Q ss_pred             CCCCCCCCCCCcCCCCchHHHHhhhhcC
Q 044394           11 PGKNPNNVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        11 ~~~~~~~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      |-.|+-.=|+++|.++++|.+|+++|+|
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccCC
Confidence            3445555589999999999999999986

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.001  Score=32.07  Aligned_cols=21  Identities=29%  Similarity=0.849  Sum_probs=19.5

Q ss_pred             cccccccCcccCCchhHhhhc
Q 044394           45 PYKCPKCNGAFGTSQAFAAHM   65 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~   65 (140)
                      ||+|..||+.+.+..+|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            799999999999999999885

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0023  Score=31.72  Aligned_cols=27  Identities=15%  Similarity=0.096  Sum_probs=23.2

Q ss_pred             CCCCCCCCCCCcCCCCchHHHHhhhhc
Q 044394           11 PGKNPNNVQNPNRKENQDVEYDGRIHS   37 (140)
Q Consensus        11 ~~~~~~~~~~~~~~k~s~L~~H~r~Ht   37 (140)
                      |-.|+-.=|+++|..+++|.+|+++|+
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            556666668999999999999999996

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.89  E-value=0.0017  Score=31.81  Aligned_cols=29  Identities=24%  Similarity=0.432  Sum_probs=26.3

Q ss_pred             CccccccccCcccCCchhHhhhcccccCC
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      +.-|.|..|...|.+.-.|.-|+-.|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            56789999999999999999999999985

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0017  Score=33.44  Aligned_cols=23  Identities=9%  Similarity=-0.036  Sum_probs=20.9

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      +..|..+|...++|..|+++|+|
T Consensus        10 C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1          10 CVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             CSSSCCEESSHHHHHHHHHGGGC
T ss_pred             CCCCCCEeCchHHhHhhccccCC
Confidence            35778999999999999999998

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0022  Score=31.33  Aligned_cols=23  Identities=43%  Similarity=0.888  Sum_probs=21.3

Q ss_pred             cccccccCcccCCchhHhhhccc
Q 044394           45 PYKCPKCNGAFGTSQAFAAHMRS   67 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~r~   67 (140)
                      ||.|..|..+|....+|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999999999999999999865

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0058  Score=32.18  Aligned_cols=30  Identities=10%  Similarity=0.138  Sum_probs=23.2

Q ss_pred             CCCCCCCC-CCCCCcCCCCchHHHHhhhhcC
Q 044394            9 KNPGKNPN-NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus         9 ~~~~~~~~-~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      |..-+... ..|..+|...++|..|+++|+|
T Consensus         7 Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           7 QRERRRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             cCCCCCEecCCCCceeeCHHHHHHhCccCCC
Confidence            33344444 4568999999999999999998

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0023  Score=31.20  Aligned_cols=22  Identities=18%  Similarity=0.099  Sum_probs=19.4

Q ss_pred             CCCCCCcCCCCchHHHHhhhhc
Q 044394           16 NNVQNPNRKENQDVEYDGRIHS   37 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Ht   37 (140)
                      ++.|..+|..+++|..|+++||
T Consensus         5 C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           5 CLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcCeeccCcccccCccCCC
Confidence            3567899999999999999996

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0024  Score=33.60  Aligned_cols=27  Identities=30%  Similarity=0.677  Sum_probs=23.7

Q ss_pred             Cccccc--cccCcccCCchhHhhhccccc
Q 044394           43 YGPYKC--PKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        43 ekP~~C--~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      ++||.|  +.|+.+|....+|..|..-|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            899999  669999999999999976653

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0028  Score=32.17  Aligned_cols=28  Identities=14%  Similarity=0.124  Sum_probs=25.0

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcCCCCCCcccc
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSHPCKKYGPYK   47 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg~h~~ekP~~   47 (140)
                      +.+|...|....+|.+|...|++    ++||.
T Consensus         8 ce~cgk~frdvyhlnrhklshs~----ekpys   35 (35)
T d2epra1           8 CEICGKIFRDVYHLNRHKLSHSG----EKPYS   35 (35)
T ss_dssp             ETTTTEEESSHHHHHHHGGGSCS----CCCCC
T ss_pred             HHHHHHHHHHHHHHHhhhcccCC----CCCCC
Confidence            46788999999999999999999    99983

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.10  E-value=0.0043  Score=32.24  Aligned_cols=22  Identities=5%  Similarity=0.087  Sum_probs=20.5

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      .+|+..|..+++|..|+++|+.
T Consensus        11 ~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_          11 RICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             SSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCCcccChHHHHHHccccCC
Confidence            5789999999999999999997

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.86  E-value=0.015  Score=29.49  Aligned_cols=28  Identities=14%  Similarity=0.078  Sum_probs=22.7

Q ss_pred             CCCCCCCCCCCcCCCCchHHHHhhhhcC
Q 044394           11 PGKNPNNVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        11 ~~~~~~~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      |-.|.--=|+++|.++++|.+|+++|+.
T Consensus         3 P~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           3 PYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            3344444589999999999999999986

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.0048  Score=30.17  Aligned_cols=24  Identities=25%  Similarity=0.599  Sum_probs=21.2

Q ss_pred             ccccccccCcccCCchhHhhhccc
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRS   67 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~   67 (140)
                      +||+|..|.---.+.++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            599999999888999999999853

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.69  E-value=0.0053  Score=28.84  Aligned_cols=21  Identities=38%  Similarity=0.948  Sum_probs=19.7

Q ss_pred             cccccccCcccCCchhHhhhc
Q 044394           45 PYKCPKCNGAFGTSQAFAAHM   65 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~   65 (140)
                      ||+|..|...|-+...|..|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            899999999999999999886

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.66  E-value=0.0054  Score=33.90  Aligned_cols=20  Identities=10%  Similarity=0.034  Sum_probs=19.3

Q ss_pred             CCCcCCCCchHHHHhhhhcC
Q 044394           19 QNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        19 ~~~~~~k~s~L~~H~r~Htg   38 (140)
                      |+.+|.++++|..|+++|+|
T Consensus        26 C~k~F~~~~~L~~H~r~Htg   45 (47)
T d1ncsa_          26 CTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             CCCEECSSSSHHHHHHHHTT
T ss_pred             CCccccCchHHHhhcccccC
Confidence            78999999999999999999

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.012  Score=28.61  Aligned_cols=21  Identities=14%  Similarity=0.045  Sum_probs=19.1

Q ss_pred             CCCCcCCCCchHHHHhhhhcC
Q 044394           18 VQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        18 ~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      -|+..|++.+.|..|+|.|++
T Consensus         6 ~Cg~~C~KPSvL~KHIRsHT~   26 (28)
T d1bboa1           6 ECGIRAKKPSMLKKHIRTHTD   26 (28)
T ss_dssp             TTCCBCSSHHHHHHHHHHTSS
T ss_pred             ccCcccCCHHHHHHHHHHhcC
Confidence            357889999999999999998

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.01  Score=28.57  Aligned_cols=26  Identities=31%  Similarity=0.606  Sum_probs=23.0

Q ss_pred             cccccccCcccCCchhHhhhcccccC
Q 044394           45 PYKCPKCNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      |-+|+.|..+.+....|..|.++|-.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            67899999999999999999998853

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.017  Score=27.22  Aligned_cols=23  Identities=13%  Similarity=0.079  Sum_probs=20.0

Q ss_pred             CCCCCCcCCCCchHHHHhhhhcC
Q 044394           16 NNVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        16 ~~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      +.+|+.-|.++..|+.|+|.|+|
T Consensus         4 c~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           4 CEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             BTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             cchhhhHhcchhHHHHHhhccCC
Confidence            35788889999999999999986

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.024  Score=27.23  Aligned_cols=22  Identities=9%  Similarity=0.045  Sum_probs=19.6

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      ..|..+|..++.|++|+.+|++
T Consensus         6 ~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           6 AECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             TTTCCEESSHHHHHHHGGGTSC
T ss_pred             HHHhHHHHHHHHHHHHhhcccC
Confidence            3467899999999999999998

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.026  Score=29.19  Aligned_cols=22  Identities=5%  Similarity=-0.041  Sum_probs=20.1

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      .+|..+|..+++|..|+++|++
T Consensus        12 ~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2          12 SHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             SSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCcCCHhHHHHhCcccCC
Confidence            4678999999999999999987

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.018  Score=29.35  Aligned_cols=23  Identities=22%  Similarity=0.262  Sum_probs=17.4

Q ss_pred             cccCcccCCchhHhhhcccccCC
Q 044394           49 PKCNGAFGTSQAFAAHMRSHYKY   71 (140)
Q Consensus        49 ~~Cgk~F~~~~~L~~H~r~Ht~e   71 (140)
                      +.=++.|.....|..|+|.||||
T Consensus        11 ~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          11 SRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCcchhHHHHHHHHhhcCCC
Confidence            33356688888888888888875

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.02  Score=29.14  Aligned_cols=26  Identities=23%  Similarity=0.535  Sum_probs=22.1

Q ss_pred             cccccccCcccCCchhHhhhcccccC
Q 044394           45 PYKCPKCNGAFGTSQAFAAHMRSHYK   70 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~r~Ht~   70 (140)
                      .|.|..|++.|.++..+.+|.--.+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            58999999999999999999765444

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.28  E-value=0.02  Score=31.51  Aligned_cols=26  Identities=23%  Similarity=0.462  Sum_probs=22.3

Q ss_pred             ccccccccCcccCCchhHhhhccccc
Q 044394           44 GPYKCPKCNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        44 kP~~C~~Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      .-|.|..|+|.|.....|..|...|.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            35789999999999999999987663

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.71  E-value=0.025  Score=26.47  Aligned_cols=22  Identities=32%  Similarity=0.754  Sum_probs=19.8

Q ss_pred             ccccccCcccCCchhHhhhccc
Q 044394           46 YKCPKCNGAFGTSQAFAAHMRS   67 (140)
Q Consensus        46 ~~C~~Cgk~F~~~~~L~~H~r~   67 (140)
                      |.|+.|-+.|.+..++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            6899999999999999999764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.40  E-value=0.057  Score=27.91  Aligned_cols=22  Identities=5%  Similarity=-0.002  Sum_probs=19.6

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      ..|+.+|..+++|..|+++|..
T Consensus        15 ~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_          15 PDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             TTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCCCEecCHHHHHHHHhcCcC
Confidence            4578999999999999999975

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.07  E-value=0.16  Score=25.37  Aligned_cols=23  Identities=26%  Similarity=0.554  Sum_probs=20.5

Q ss_pred             cccccccCcccCCchhHhhhccc
Q 044394           45 PYKCPKCNGAFGTSQAFAAHMRS   67 (140)
Q Consensus        45 P~~C~~Cgk~F~~~~~L~~H~r~   67 (140)
                      .|.|.-||-.|++.+.|..|+..
T Consensus         8 rf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             ceeccccceeecChhHHHhhhhe
Confidence            48899999999999999999754

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.63  E-value=0.2  Score=23.92  Aligned_cols=19  Identities=26%  Similarity=0.583  Sum_probs=16.5

Q ss_pred             cCcccCCchhHhhhccccc
Q 044394           51 CNGAFGTSQAFAAHMRSHY   69 (140)
Q Consensus        51 Cgk~F~~~~~L~~H~r~Ht   69 (140)
                      |.+.|...+.+..|+.+|.
T Consensus         9 C~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             CCCEESSHHHHHHHHGGGS
T ss_pred             HHHHhhchHHHHHHhhccC
Confidence            9999999999999987763

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.50  E-value=0.24  Score=26.95  Aligned_cols=25  Identities=24%  Similarity=0.545  Sum_probs=22.9

Q ss_pred             CccccccccCcccCCchhHhhhccc
Q 044394           43 YGPYKCPKCNGAFGTSQAFAAHMRS   67 (140)
Q Consensus        43 ekP~~C~~Cgk~F~~~~~L~~H~r~   67 (140)
                      +.|-.|+.|+....++.+|.+|...
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999854

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.01  E-value=0.2  Score=23.75  Aligned_cols=21  Identities=24%  Similarity=0.880  Sum_probs=19.2

Q ss_pred             ccccccCcccCCchhHhhhcc
Q 044394           46 YKCPKCNGAFGTSQAFAAHMR   66 (140)
Q Consensus        46 ~~C~~Cgk~F~~~~~L~~H~r   66 (140)
                      |+|+.|+....+++.|..|++
T Consensus         3 ~qcphc~tiiarksdlrvhlr   23 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLR   23 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhh
Confidence            789999999999999999875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.66  E-value=0.54  Score=21.95  Aligned_cols=22  Identities=9%  Similarity=0.013  Sum_probs=18.8

Q ss_pred             CCCCCcCCCCchHHHHhhhhcC
Q 044394           17 NVQNPNRKENQDVEYDGRIHSH   38 (140)
Q Consensus        17 ~~~~~~~~k~s~L~~H~r~Htg   38 (140)
                      -.|-..|..+.-|+.|-|.|+|
T Consensus         4 p~c~k~f~skyylkvhnr~htg   25 (27)
T d2dlqa4           4 PTCHKKFLSKYYLKVHNRKHTG   25 (27)
T ss_dssp             TTTCCCCSSHHHHHHHHHHHSS
T ss_pred             cchHHHHHHhHhhhhccccccC
Confidence            3566788889999999999998