Citrus Sinensis ID: 044511

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
MAASTTPIKPADQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGNTNKSLYATALKFRVLRQYETFSRFMDEKGRFKSSGHSDDGKGMLALIFRDATSFTTAYLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDILISYLKK
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
ccEEcccccccccccEcccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccc
maasttpikpadqtiirrsadygptiwsFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLqqddkvvdldplhqlELIDNLHRLGNTNKSLYATALKFRVLRQYETFSRfmdekgrfkssghsddgkGMLALIFRDATSFTTAYLKEWVIKhdsnknddeHLCTLVNHALELPLHWRMLRLEARWFIDvyengpdmnPILLELAKVDFNIVQAVHQENLKYASRWWkktglggenlNFVRDRIVENFfwsvgekfepqfgyfRRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDILISYLKK
maasttpikpadqtiirrsadygptIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGNTNKSLYATALKFRVLRQYETFsrfmdekgrfkssghsddgKGMLALIFRDATSFTTAYLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIVQAVHQENLKYASRWWkktglggenlnFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDILISYLKK
MAASTTPIKPADQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGNTNKSLYATALKFRVLRQYETFSRFMDEKGRFKSSGHSDDGKGMLALIFRDATSFTTAYLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDILISYLKK
**************IIRRSADYGPTIWSFDYIQSLD****************************VVDLDPLHQLELIDNLHRLGNTNKSLYATALKFRVLRQYETFSRFM****************GMLALIFRDATSFTTAYLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDILISYL**
*********************YGPTIWSFDYIQSLDS**********LEKPKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGNTNKSLYATALKFRVLRQYETFSRFMDEKGRFKSSGHSDDGKGMLALIFRDATSFTTAYLK***************LCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDILISYLKK
********KPADQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGNTNKSLYATALKFRVLRQYETFSRFMDEKG*********DGKGMLALIFRDATSFTTAYLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDILISYLKK
************QTIIRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGNTNKSLYATALKFRVLRQYETFSRFMDEKGRFKSSGHSDDGKGMLALIFRDATSFTTAYLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDILISYLKK
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MAASTTPIKPADQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGNTNKSLYATALKFRVLRQYETFSRFMDEKGRFKSSGHSDDGKGMLALIFRDATSFTTAYLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDILISYLKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query343 2.2.26 [Sep-21-2011]
Q8L5K4 600 Gamma-terpinene synthase, N/A no 0.997 0.57 0.759 1e-165
Q93X23 597 Myrcene synthase, chlorop N/A no 0.953 0.547 0.515 7e-97
Q6PWU2 590 (-)-alpha-terpineol synth no no 0.932 0.542 0.513 8e-96
A7IZZ2 615 (+)-alpha-pinene synthase N/A no 0.941 0.525 0.498 2e-93
B3TPQ7 592 Alpha-terpineol synthase, N/A no 0.912 0.528 0.487 1e-87
A7IZZ1 622 (-)-limonene synthase, ch N/A no 0.930 0.512 0.466 5e-82
Q8L5K3 606 (R)-limonene synthase 1 O N/A no 0.915 0.518 0.460 3e-80
G1JUH1 607 (-)-camphene/tricyclene s N/A no 0.953 0.538 0.432 1e-76
Q2XSC6 602 (R)-limonene synthase OS= N/A no 0.950 0.541 0.431 3e-76
A4FVP2 565 Tricyclene synthase, chlo no no 0.950 0.576 0.438 4e-74
>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1 Back     alignment and function desciption
 Score =  582 bits (1499), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/382 (75%), Positives = 312/382 (81%), Gaps = 40/382 (10%)

Query: 1   MAASTTPIKPADQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQ 60
           MAAST+ IKP DQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYA+QLEK KEQVSAMLQ
Sbjct: 40  MAASTSSIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQ 99

Query: 61  QDDKVVDLDPLHQLELIDNLHRLG-------------------NTNKSLYATALKFRVLR 101
           QD+KVVDLDPLHQLELIDNLHRLG                   NTNKSLYA ALKFR+LR
Sbjct: 100 QDNKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNKSLYARALKFRILR 159

Query: 102 QY-------ETFSRFMDEKGRFKSSGHSDDGKGMLAL-------------IFRDATSFTT 141
           QY       ETFSRFMDEKG FK S HSD+ KGMLAL             IFRDA  FTT
Sbjct: 160 QYGYKTPVKETFSRFMDEKGSFKLSSHSDECKGMLALYEAAYLLVEEESSIFRDAIRFTT 219

Query: 142 AYLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLE 201
           AYLKEWV KHD +KND+E+LCTLV HALELPLHWRM RLEARWFIDVYE+GPDMNPILLE
Sbjct: 220 AYLKEWVAKHDIDKNDNEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLE 279

Query: 202 LAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYF 261
           LAKVD+NIVQAVHQE+LKY SRWWKKTGL GE LNF RDR+VENFFW+VG+ FEPQFGY 
Sbjct: 280 LAKVDYNIVQAVHQEDLKYVSRWWKKTGL-GEKLNFARDRVVENFFWTVGDIFEPQFGYC 338

Query: 262 RRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSI 321
           RRMS MVN L+T+IDDVYDVYGTL+ELE+FTDAVERWDAT  EQLP+YMKLCFHAL NS+
Sbjct: 339 RRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATTTEQLPYYMKLCFHALYNSV 398

Query: 322 NEMTFDVLRDQGVDILISYLKK 343
           NEM F  LRDQ V ++I YLKK
Sbjct: 399 NEMGFIALRDQEVGMIIPYLKK 420
Monoterpene synthase which catalyzes the conversion of geranyl diphosphate to gamma-terpinene and the minor products limonene, alpha-pinene, beta-pinene, alpha-terpinolene, alpha-thujene, alpha-terpinene, myrcene and sabinene.
Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 1EC: 1EC: 4
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|A7IZZ2|TPS2_CANSA (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|A7IZZ1|TPS1_CANSA (-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1 Back     alignment and function description
>sp|G1JUH1|TPS3_SOLLC (-)-camphene/tricyclene synthase, chloroplastic OS=Solanum lycopersicum GN=TPS3 PE=1 SV=1 Back     alignment and function description
>sp|Q2XSC6|LALIM_LAVAN (R)-limonene synthase OS=Lavandula angustifolia PE=1 SV=1 Back     alignment and function description
>sp|A4FVP2|TPS03_ARATH Tricyclene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query343
21435705 602 (-)-beta-pinene synthase [Citrus limon] 0.997 0.568 0.837 0.0
49659443 602 beta-pinene synthase [Citrus unshiu] 0.997 0.568 0.829 1e-180
152962686 602 beta-pinene synthase [Citrus jambhiri] 0.997 0.568 0.832 1e-179
322424199 602 pinene synthase [Citrus hystrix] 0.997 0.568 0.814 1e-177
49659441 600 gamma-terpinene synthase [Citrus unshiu] 0.997 0.57 0.759 1e-164
61161981 602 monoterpene synthase [Citrus unshiu] 0.997 0.568 0.764 1e-164
75245637 600 RecName: Full=Gamma-terpinene synthase, 0.997 0.57 0.759 1e-163
49659439 600 gamma-terpinene synthase [Citrus unshiu] 0.997 0.57 0.746 1e-160
61161985 617 (E)-beta-ocimene synthase [Citrus unshiu 0.932 0.518 0.560 1e-108
218117805 595 +limonene synthase [Toona sinensis] 0.950 0.547 0.538 1e-103
>gi|21435705|gb|AAM53945.1|AF514288_1 (-)-beta-pinene synthase [Citrus limon] Back     alignment and taxonomy information
 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/382 (83%), Positives = 330/382 (86%), Gaps = 40/382 (10%)

Query: 1   MAASTTPIKPADQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQ 60
           +AASTTPIKP DQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYA+QLEK KEQVSAMLQ
Sbjct: 40  VAASTTPIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQ 99

Query: 61  QDDKVVDLDPLHQLELIDNLHRLG-------------------NTNKSLYATALKFRVLR 101
           QD+KVVDLD LHQLELIDNLHRLG                   NTNKSLYATALKFR+LR
Sbjct: 100 QDNKVVDLDTLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNKSLYATALKFRILR 159

Query: 102 QY-------ETFSRFMDEKGRFKSSGHSDDGKGMLAL-------------IFRDATSFTT 141
           QY       ETFSRFMDEKG FKSS HSDD KGMLAL             IFRDA SFTT
Sbjct: 160 QYGYNTPVKETFSRFMDEKGSFKSSSHSDDCKGMLALYEAAYLLVEEESSIFRDAKSFTT 219

Query: 142 AYLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLE 201
           AYLKEWVI+HD+NK+DDEHLCTLVNHALELPLHWRM RLEARWFIDVYENGP MNPILLE
Sbjct: 220 AYLKEWVIEHDNNKHDDEHLCTLVNHALELPLHWRMPRLEARWFIDVYENGPHMNPILLE 279

Query: 202 LAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYF 261
           LAKVDFNIVQAVHQENLKYASRWWKKTGLG ENLNFVRDRIVENF W+VGEKFEPQFGYF
Sbjct: 280 LAKVDFNIVQAVHQENLKYASRWWKKTGLG-ENLNFVRDRIVENFMWTVGEKFEPQFGYF 338

Query: 262 RRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSI 321
           RRMSTMVNALITA+DDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSI
Sbjct: 339 RRMSTMVNALITAVDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSI 398

Query: 322 NEMTFDVLRDQGVDILISYLKK 343
           NEMTFD LRDQGVDI+ISYL K
Sbjct: 399 NEMTFDALRDQGVDIVISYLTK 420

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|49659443|dbj|BAD27260.1| beta-pinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|152962686|dbj|BAF73933.1| beta-pinene synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|322424199|gb|ADX01381.1| pinene synthase [Citrus hystrix] Back     alignment and taxonomy information
>gi|49659441|dbj|BAD27259.1| gamma-terpinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|61161981|dbj|BAD91045.1| monoterpene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|75245637|sp|Q8L5K4.1|GTPS_CITLI RecName: Full=Gamma-terpinene synthase, chloroplastic; Short=ClgammaTS; Flags: Precursor gi|21435701|gb|AAM53943.1|AF514286_1 gamma-terpinene synthase [Citrus limon] Back     alignment and taxonomy information
>gi|49659439|dbj|BAD27258.1| gamma-terpinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|61161985|dbj|BAD91046.1| (E)-beta-ocimene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|218117805|dbj|BAH03282.1| +limonene synthase [Toona sinensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query343
UNIPROTKB|Q8L5K4 600 Q8L5K4 "Gamma-terpinene syntha 0.696 0.398 0.770 5.3e-161
UNIPROTKB|B3TPQ7 592 B3TPQ7 "Alpha-terpineol syntha 0.758 0.439 0.538 2.8e-84
TAIR|locus:2129101 565 TPS03 "terpene synthase 03" [A 0.822 0.499 0.472 3.8e-75
UNIPROTKB|J7LH11 546 J7LH11 "(+)-epi-alpha-bisabolo 0.734 0.461 0.476 4.7e-72
UNIPROTKB|Q9SPN0 567 QH1 "R-linalool synthase QH1, 0.728 0.440 0.467 5.3e-69
UNIPROTKB|J7LQ09 542 J7LQ09 "Trans-alpha-bergamoten 0.728 0.461 0.444 2.9e-68
UNIPROTKB|Q9SPN1 583 QH5 "R-linalool synthase QH5, 0.737 0.433 0.464 4.7e-68
UNIPROTKB|Q672F7 595 EBOS "Tricyclene synthase EBOS 0.725 0.418 0.483 7.7e-68
TAIR|locus:2047510 591 TPS10 "terpene synthase 10" [A 0.728 0.423 0.431 5.4e-67
UNIPROTKB|Q50L36 595 ISPS "Isoprene synthase, chlor 0.728 0.420 0.467 6.8e-67
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
 Score = 1017 (363.1 bits), Expect = 5.3e-161, Sum P(3) = 5.3e-161
 Identities = 195/253 (77%), Positives = 213/253 (84%)

Query:   104 ETFSRFMDEKGRFKSSGHSDDGKGMLAL-------------IFRDATSFTTAYLKEWVIK 150
             ETFSRFMDEKG FK S HSD+ KGMLAL             IFRDA  FTTAYLKEWV K
Sbjct:   169 ETFSRFMDEKGSFKLSSHSDECKGMLALYEAAYLLVEEESSIFRDAIRFTTAYLKEWVAK 228

Query:   151 HDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIV 210
             HD +KND+E+LCTLV HALELPLHWRM RLEARWFIDVYE+GPDMNPILLELAKVD+NIV
Sbjct:   229 HDIDKNDNEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIV 288

Query:   211 QAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNA 270
             QAVHQE+LKY SRWWKKTGLG E LNF RDR+VENFFW+VG+ FEPQFGY RRMS MVN 
Sbjct:   289 QAVHQEDLKYVSRWWKKTGLG-EKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNC 347

Query:   271 LITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLR 330
             L+T+IDDVYDVYGTL+ELE+FTDAVERWDAT  EQLP+YMKLCFHAL NS+NEM F  LR
Sbjct:   348 LLTSIDDVYDVYGTLDELELFTDAVERWDATTTEQLPYYMKLCFHALYNSVNEMGFIALR 407

Query:   331 DQGVDILISYLKK 343
             DQ V ++I YLKK
Sbjct:   408 DQEVGMIIPYLKK 420
GO:0000287 "magnesium ion binding" evidence=IDA
GO:0010333 "terpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
TAIR|locus:2129101 TPS03 "terpene synthase 03" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SPN0 QH1 "R-linalool synthase QH1, chloroplastic" [Artemisia annua (taxid:35608)] Back     alignment and assigned GO terms
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SPN1 QH5 "R-linalool synthase QH5, chloroplastic" [Artemisia annua (taxid:35608)] Back     alignment and assigned GO terms
UNIPROTKB|Q672F7 EBOS "Tricyclene synthase EBOS, chloroplastic" [Lotus japonicus (taxid:34305)] Back     alignment and assigned GO terms
TAIR|locus:2047510 TPS10 "terpene synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q50L36 ISPS "Isoprene synthase, chloroplastic" [Populus alba (taxid:43335)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-131
pfam03936 270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-55
cd00868 284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 6e-44
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 1e-30
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 7e-16
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 1e-12
cd00385 243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 6e-10
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  385 bits (990), Expect = e-131
 Identities = 162/371 (43%), Positives = 217/371 (58%), Gaps = 52/371 (14%)

Query: 17  RRSADYGPTIWSFDYIQSLDSKYKGES-YAKQLEKPKEQVSAMLQQDDKVVDLDPLHQLE 75
           R SA++ P++W  D+  SL S Y  E    +++E+ KE+V  ML  +D    +D   +L 
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKML--EDSEYPVDLFERLW 58

Query: 76  LIDNLHRLG-------------------------NTNKSLYATALKFRVLRQY------E 104
           LID L RLG                         +    LY TAL FR+LRQ+      +
Sbjct: 59  LIDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSD 118

Query: 105 TFSRFMDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTAYLKEWVIKHD 152
            F +F DE G+FK S  + D KGML+L            I  +A SFTT +L+E +   +
Sbjct: 119 VFKKFKDEDGKFKES-LTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKL---E 174

Query: 153 SNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIVQA 212
           SN   D  L   + +ALE+PLH  + RLEARW+I+ YE   D N  LLELAK+DFNI+QA
Sbjct: 175 SNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQA 234

Query: 213 VHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALI 272
           +HQE LK  SRWWK   L    L F RDR+VE +FW+ G  FEPQ+   R       ALI
Sbjct: 235 LHQEELKILSRWWKDLDLA-SKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALI 293

Query: 273 TAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQ 332
           T IDD YDVYGTLEELE+FT+AVERWD +A++QLP YMK+ F AL N++NE+  ++L++ 
Sbjct: 294 TVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEG 353

Query: 333 GVDILISYLKK 343
           G  ++  YLK+
Sbjct: 354 GSYVV-PYLKE 363

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 343
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PLN02592 800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936 270 Terpene_synth_C: Terpene synthase family, metal bi 99.88
cd00868 284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 99.8
cd00687 303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 98.15
cd00385 243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 96.64
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=1.5e-95  Score=751.93  Aligned_cols=319  Identities=50%  Similarity=0.822  Sum_probs=299.0

Q ss_pred             CCCCCCCCCCCCCCccccCCCccchh-HHHHHHhhHHHHHHHHhhcCCCcCCCCchhhHHHHHHHHHhCCCC--------
Q 044511           17 RRSADYGPTIWSFDYIQSLDSKYKGE-SYAKQLEKPKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGNTN--------   87 (343)
Q Consensus        17 r~~~~~~ps~W~~~fl~~~~~~~~~~-~~~~~~~~Lk~~Vk~~l~~~~~~~~~d~~~~L~lID~LqRLGI~~--------   87 (343)
                      |++++|+||+|||+++++.++++... .+.+++++||++||+|+....  ||.|++++|++||+||||||++        
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~--~~~~~~~~l~liD~lqrLGi~~hF~~EI~~   78 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSE--YPVDLFERLWLIDRLQRLGISYHFEDEIKE   78 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcc--cCCCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence            78999999999995555555544433 688999999999999998652  5689999999999999999931        


Q ss_pred             -----------------CchhhhhHHHhhhccc------ccccccccccccccCCCCCCChHHHHHH------------H
Q 044511           88 -----------------KSLYATALKFRVLRQY------ETFSRFMDEKGRFKSSGHSDDGKGMLAL------------I  132 (343)
Q Consensus        88 -----------------~dL~~~AL~FRLLR~h------DvF~~F~d~~G~F~~~~l~~dv~glLsL------------i  132 (343)
                                       .||++|||+|||||||      |||++|+|++|+|+++ +.+||+|||||            |
T Consensus        79 ~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~-~~~d~~g~l~Ly~As~l~~~gE~i  157 (542)
T cd00684          79 ILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKES-LTQDVKGMLSLYEASHLSFPGEDI  157 (542)
T ss_pred             HHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCch-hhhhhHHHHHHHHHhhcCCCCcHH
Confidence                             4999999999999999      9999999999999999 99999999999            9


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHhcchhhhhhhhhHHHHHHHHHhcCCCCCchHHHHHHHhhhHHHhh
Q 044511          133 FRDATSFTTAYLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIVQA  212 (343)
Q Consensus       133 LdeA~~Fs~~~L~~~~~~~~~~~~~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFn~~Qs  212 (343)
                      ||||++||++||++.++++   +.++++|+++|++||++|||+++||||||+||++|++++++|++||||||+|||+||+
T Consensus       158 LdeA~~ft~~~L~~~~~~~---~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~  234 (542)
T cd00684         158 LDEALSFTTKHLEEKLESN---WIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQA  234 (542)
T ss_pred             HHHHHHHHHHHHHHHhhcc---CCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhH
Confidence            9999999999999999864   2367899999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHhCCCCCCCCcccchhhHHHHHhhccccCCCcchhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Q 044511          213 VHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITAIDDVYDVYGTLEELEIFT  292 (343)
Q Consensus       213 ~hq~EL~~lsrWwke~~l~~~~L~faRdr~ve~Yfw~~~~~fEP~~s~~Ri~~tK~~~litviDD~yD~yGTleEl~~ft  292 (343)
                      +||+||++++|||+++||. ++|||+|+|++|||||++|++|||++|.+|+++||++++++++||+||+|||+|||+.||
T Consensus       235 ~hq~El~~~~rWwk~~gL~-~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft  313 (542)
T cd00684         235 LHQEELKILSRWWKDLDLA-SKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFT  313 (542)
T ss_pred             hHHHHHHHHhHHHHhcCCc-ccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHH
Confidence            9999999999999999998 888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCchhhccCChHHHHHHHHHHHHHHHHHHHHHHccCchhhhhhhhC
Q 044511          293 DAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDILISYLKK  343 (343)
Q Consensus       293 ~averWD~~~~~~Lpeymk~~f~al~~t~~ei~~~~~~~~g~~~~~~~lk~  343 (343)
                      +||+|||.+++++||+|||+||.+|+++++|+++++.+.+|.+ +++|+++
T Consensus       314 ~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~-~~~~~~~  363 (542)
T cd00684         314 EAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSY-VVPYLKE  363 (542)
T ss_pred             HHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHH
Confidence            9999999999999999999999999999999999999999988 8888763

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 6e-75
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 1e-70
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 2e-70
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 5e-66
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 4e-50
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 5e-50
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 6e-50
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 6e-50
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 7e-50
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 8e-50
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 4e-49
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-48
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 1e-48
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 3e-47
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 4e-39
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 3e-36
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 7e-34
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 4e-09
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure 
Iteration: 1

 Score =  277 bits (708), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 160/366 (43%), Positives = 215/366 (58%), Gaps = 52/366 (14%)
Query: 18  RSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQDDKVVDLDPLHQLELI 77
           R+  Y PT+W F  IQS DS+YK E +  +     +QV  MLQ++     +D + +LELI
Sbjct: 36  RTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEE-----VDSIRRLELI 90
Query: 78  DNLHRLGNT----------------------NKSLYATALKFRVLRQY------ETFSRF 109
           D+L RLG +                       + LY+TAL+FR+LRQY      E F  F
Sbjct: 91  DDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCF 150
Query: 110 MDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTAYLKEWVIKHDSNKND 157
            + KG        DD +G+L L              R A  F T +L++ V+      + 
Sbjct: 151 KNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLV-----DK 205
Query: 158 DEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIVQAVHQEN 217
           D +L + +  ALELP HWR+    AR FID Y+  PDMNP +LELAK+DFN+VQA  Q+ 
Sbjct: 206 DINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQE 265
Query: 218 LKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITAIDD 277
           LK ASRWW  TGL  E L FVRDRIVE ++W+ G     Q GY R M T +NAL+T IDD
Sbjct: 266 LKEASRWWNSTGLVHE-LPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDD 324
Query: 278 VYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDIL 337
           V+D+YGTLEEL++FT A++RWD  +++QLP YM++C+ AL N +NEM +D LRD+G D  
Sbjct: 325 VFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDS- 383
Query: 338 ISYLKK 343
             YL+K
Sbjct: 384 TPYLRK 389
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 8e-98
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 3e-93
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 6e-93
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 3e-91
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 7e-91
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 3e-90
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 3e-69
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 8e-67
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 2e-65
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-64
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 6e-09
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 4e-06
3kb9_A 382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
 Score =  299 bits (767), Expect = 8e-98
 Identities = 160/383 (41%), Positives = 213/383 (55%), Gaps = 52/383 (13%)

Query: 1   MAASTTPIKPADQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQ 60
                      D+    R+  Y PT+W F  IQS DS+YK E +  +     +QV  MLQ
Sbjct: 19  QQMGRDLYDDDDKDRWIRTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQ 78

Query: 61  QDDKVVDLDPLHQLELIDNLHRLG----------------------NTNKSLYATALKFR 98
           ++      D + +LELID+L RLG                         + LY+TAL+FR
Sbjct: 79  EEV-----DSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFR 133

Query: 99  VLRQY------ETFSRFMDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFT 140
           +LRQY      E F  F + KG        DD +G+L L              R A  F 
Sbjct: 134 LLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFA 193

Query: 141 TAYLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILL 200
           T +L++ V+        D +L + +  ALELP HWR+    AR FID Y+  PDMNP +L
Sbjct: 194 TKFLQKRVLVDK-----DINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVL 248

Query: 201 ELAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGY 260
           ELAK+DFN+VQA  Q+ LK ASRWW  TGL    L FVRDRIVE ++W+ G     Q GY
Sbjct: 249 ELAKLDFNMVQAQFQQELKEASRWWNSTGLV-HELPFVRDRIVECYYWTTGVVERRQHGY 307

Query: 261 FRRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNS 320
            R M T +NAL+T IDDV+D+YGTLEEL++FT A++RWD  +++QLP YM++C+ AL N 
Sbjct: 308 ERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNF 367

Query: 321 INEMTFDVLRDQGVDILISYLKK 343
           +NEM +D LRD+G D    YL+K
Sbjct: 368 VNEMAYDTLRDKGFDS-TPYLRK 389
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query343
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 100.0
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1di1_A 300 Aristolochene synthase; sesquiterpene cyclase, iso 99.85
3bny_A 320 Aristolochene synthase; sesquiterpene cyclase, iso 99.84
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 99.83
3kb9_A 382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 99.47
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.51
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=3.3e-107  Score=836.46  Aligned_cols=319  Identities=37%  Similarity=0.643  Sum_probs=294.5

Q ss_pred             CCccccCCCCCCCCCCCCCCccccCCCccchhHHHHHHhhHHHHHHHHhhcCCCcCCCCchhhHHHHHHHHHhCCCC---
Q 044511           11 ADQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGNTN---   87 (343)
Q Consensus        11 ~~~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~Vk~~l~~~~~~~~~d~~~~L~lID~LqRLGI~~---   87 (343)
                      +++++.||++|||||+|||+||++ ++++..+.+.+++++||++||+||.+..    .|++++|+|||+||||||++   
T Consensus        16 ~~~~~~R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~~~~----~~~~~~l~lID~lqrLGi~~hF~   90 (554)
T 3g4d_A           16 SNKDEMRPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIVAPM----ANSTQKLAFIDSVQRLGVSYHFT   90 (554)
T ss_dssp             ---------CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHHSCC----SSHHHHHHHHHHHHHTTCGGGCH
T ss_pred             ccCCCCCCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHHhcc----cCHHHHHHHHHHHHHcCchhhhH
Confidence            444468999999999999999998 6666677899999999999999997632    68999999999999999942   


Q ss_pred             ------------------CchhhhhHHHhhhccc------ccccccccccccccCCCCCCChHHHHHH------------
Q 044511           88 ------------------KSLYATALKFRVLRQY------ETFSRFMDEKGRFKSSGHSDDGKGMLAL------------  131 (343)
Q Consensus        88 ------------------~dL~~~AL~FRLLR~h------DvF~~F~d~~G~F~~~~l~~dv~glLsL------------  131 (343)
                                        .||++|||+|||||||      |||++|+|++|+|+++ +.+|++|||||            
T Consensus        91 ~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~-l~~d~~glL~LYeAs~l~~~gE~  169 (554)
T 3g4d_A           91 KEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSS-VTSDVRGLLELYQASYLRVHGED  169 (554)
T ss_dssp             HHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHH-HHHCHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccc-cccchHHHHHHHHHHhCCCCCcH
Confidence                              4899999999999999      9999999999999998 99999999999            


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCchhHHHHHHhcchhhhhhhhhHHHHHHHHHhcCCCCCchHHHHHHHhhhHHHh
Q 044511          132 IFRDATSFTTAYLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIVQ  211 (343)
Q Consensus       132 iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFn~~Q  211 (343)
                      |||||+.||++||++.++.      ++++|+++|+|||++|||+++||+|||+||++|++++++|++||||||+|||+||
T Consensus       170 iLdeA~~fs~~~L~~~~~~------~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q  243 (554)
T 3g4d_A          170 ILDEAISFTTHHLSLAVAS------LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQ  243 (554)
T ss_dssp             HHHHHHHHHHHHHHHHSTT------CCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc------cCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHH
Confidence            9999999999999998865      6788999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHhHHHHHHHHHHHhCCCCCCCCcccchhhHHHHHhhccccCCCcchhhHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Q 044511          212 AVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITAIDDVYDVYGTLEELEIF  291 (343)
Q Consensus       212 s~hq~EL~~lsrWwke~~l~~~~L~faRdr~ve~Yfw~~~~~fEP~~s~~Ri~~tK~~~litviDD~yD~yGTleEl~~f  291 (343)
                      ++||+||++++||||++||+ ++|||||||+||||||++|++||||||.+|+++||+++|+|++||+||+|||+|||++|
T Consensus       244 ~~hq~El~~l~rWwk~~~l~-~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~f  322 (554)
T 3g4d_A          244 FLHRKELSEICRWWKDLDFQ-RKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPY  322 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHCHH-HHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHcCCc-ccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence            99999999999999999997 79999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCchhhccCChHHHHHHHHHHHHHHHHHHHHHHccCchhhhhhhhC
Q 044511          292 TDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDILISYLKK  343 (343)
Q Consensus       292 t~averWD~~~~~~Lpeymk~~f~al~~t~~ei~~~~~~~~g~~~~~~~lk~  343 (343)
                      |+||+|||++++++||+|||+||.+|+|++|||++++.++||++ +++|+++
T Consensus       323 t~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~-~~~ylk~  373 (554)
T 3g4d_A          323 TNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQY-RVEYAKN  373 (554)
T ss_dssp             HHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTH-HHHHHHH
T ss_pred             HHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hHHHHHH
Confidence            99999999999999999999999999999999999999888888 9999874
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 343
d1n1ba2 328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-62
d5easa2 328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 6e-60
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 2e-48
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 3e-40
d1ps1a_ 311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 4e-13
d1di1a_ 300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 8e-08
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  200 bits (509), Expect = 1e-62
 Identities = 74/149 (49%), Positives = 106/149 (71%), Gaps = 2/149 (1%)

Query: 195 MNPILLELAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKF 254
           MNP++ ELAK++FNI+QA HQ+ LK  SRWW +     E L FVRDR+VE+FFW+VG   
Sbjct: 1   MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFP-EKLPFVRDRLVESFFWAVGMFE 59

Query: 255 EPQFGYFRRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCF 314
             Q GY R+M+  +  L T IDD+YDVYGTL+ELE+FTD  +RWD  ++ +LP+YM+LC+
Sbjct: 60  PHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCY 119

Query: 315 HALRNSINEMTFDVLRDQGVDILISYLKK 343
             + N I++  +D+L++ G    + YL+K
Sbjct: 120 WGVHNYISDAAYDILKEHGFFC-LQYLRK 147
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query343
d5easa2 328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2 328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_ 311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 98.81
d1di1a_ 300 Aristolochene synthase {Fungus (Penicillium roquef 97.14
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.7e-56  Score=432.85  Aligned_cols=147  Identities=36%  Similarity=0.752  Sum_probs=144.0

Q ss_pred             CchHHHHHHHhhhHHHhhhhHhHHHHHHHHHHHhCCCCCCCCcccchhhHHHHHhhccccCCCcchhhHHHHHHHHHHHH
Q 044511          195 MNPILLELAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITA  274 (343)
Q Consensus       195 ~n~~lLelAKlDFn~~Qs~hq~EL~~lsrWwke~~l~~~~L~faRdr~ve~Yfw~~~~~fEP~~s~~Ri~~tK~~~litv  274 (343)
                      .|++||||||+|||+||++||+||+.|+|||+++|++ ++|||||||+||||||++|++||||||.+|++|||+++|+|+
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~-~~l~~aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK~~~l~ti   79 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFV-TTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISI   79 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHCTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCc-ccCCchHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHh
Confidence            4899999999999999999999999999999999997 799999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCHHHHHHHHHHHhhcCchhhccCChHHHHHHHHHHHHHHHHHHHHHHccCchhhhhhhhC
Q 044511          275 IDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDILISYLKK  343 (343)
Q Consensus       275 iDD~yD~yGTleEl~~ft~averWD~~~~~~Lpeymk~~f~al~~t~~ei~~~~~~~~g~~~~~~~lk~  343 (343)
                      +||+||+|||+|||++||+||+|||.+++++||+|||+||.+|++++|||+.++.++||++ +++|+++
T Consensus        80 ~DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~-~~~~l~~  147 (328)
T d5easa2          80 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH-IVCHAIE  147 (328)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGG-GHHHHHH
T ss_pred             hhhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCee-eHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 9999874
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure