Citrus Sinensis ID: 044606

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
Protein Sequence
FPILSHRKEKPPELTTFKLLFIIYVYVFFKKRKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQEEEEEREHRPHHQQLSFEIETESASSPSSSTSPSEEDDEEKSLFYGLRENPKRSIRLVDPEFSFGVVDASAAAAAAASASVVLQDRESETESSKNPTRRRSKRTRKLEQQHRQELDIIKKLKLNKSKNTIESSLWGHEPEPVSSISDTTTEEDQQQHHHDLIMFRQQDDDEYEDEEAEKSMDETDESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLVASTSARSASASTKLGENLIDLNLPAPIDDDDISQIELSAVSDAEFVNHIKR
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEccccccccccccccccccccccccccccccccHHHHHHccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHcccccEEcccccccccccHHHHHHccccccHHHHHHcccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccEEcccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHEEEEEEEEEEEcccccHHHHcccEEEEEcccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccHHccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEcccccccccHHHccccccccccccccccccccccccccccccccccccccccccEEEccccccEcccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
fpilshrkekppelttfKLLFIIYVYVFFKKRKSLFVMEKHKcrlcfknfsngralgghmrshmlnlpipqkiqeeeeerehrphhqqlsfeietesasspssstspseeddeekslfyglrenpkrsirlvdpefsfgvVDASAAAAAAASASVVLQdresetessknptrrrsKRTRKLEQQHRQELDIIKKLklnkskntiesslwghepepvssisdttteedqqQHHHDLIMfrqqdddeyedeeaeksmdetdeseefksfnnknrsrgkykceTCKKVFKSYqalgghrashkkikfytpvqeteldqenagasinlaspplsvkkvhecpvcfrvfssgqalgghkrthvTGLVAstsarsasastklgenlidlnlpapiddddisqielsavsdaefvnhikr
Flexible Loop (DISEMBL)
fpilshrkekppelttfkLLFIIYVYVFFKKRKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQEEEEEREHRPHHQQLSfeietesasspssstspseeddeEKSLfyglrenpkrsIRLVDPEFSFGVVDASAAAAAAASASvvlqdresetessknptrrrskrtrkleqqhrqeldiikklklnkskntiesslwghepepVSSISDTTTEEDQQQHHHDLIMFRQQDDDEYEDEEAeksmdetdeseefksfnnknrsrgkykceTCKKVFKSyqalgghrashKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFssgqalgghkRTHVTGLVASTSARSASASTKLGENLIDLNLPAPIDDDDISQIElsavsdaefvnhikr
Low Complexity Region (SEG)
FPILSHRKEKPPELTTFKLLFIIYVYVFFKKRKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIqeeeeerehrphhqqLSFeietesasspssstspseeddeeksLFYGLRENPKRSIRLVDPEFSFGVVDasaaaaaaasasVVLQDRESETESSKNPTRRRSKRTRKLEQQHRQELDiikklklnksknTIESSLWGHEPEPVSSISDTTTEEDQQQHHHDLIMFRQQdddeyedeeaeksmdeTDESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLVastsarsasastKLGENLIDLNLPAPIDDDDISQIELSAVSDAEFVNHIKR
Disordered region (IsUnstruct)
*************LTTFKLLFIIYVYVFFKKRKSLFVMEKHKCRLCFKNFSNGRALGGHM********************************************************************IRLVDPEFSFGVVDAS************************************************************************************************************************************YKCETCKKVFKSYQALGGHRASHKKIKFYTPV*******************PLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLV*****************LIDLNL****************************
Disordered Region (DISOPRED)
FPILSHRKEKPPELTTFKLLFII*****************HKCRLCFKNFSNGRALGGHMRSHMLN*********************************************************************************************************************************************************************************************************************ETCKKVFKSY**********************************************ECPVCFRVFSSGQALGGHKRT************************IDLNLPAPIDDDDISQIELSAVSDAEFVNH***
Disordered Region (DISEMBL)
FPILSHRKEKPPELTTFKLLFIIYVYVFFKKRKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQ*****************************************SLFYGLRENPKRSIRLVDPEFSFGVVDAS*****************************************RQELDIIKKLKLNKSKNTIESSLWGH********************HHDLIMFRQQD**************************NKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLVAS********STKLGENLIDLNLPAPIDDDDISQIELSAVSDAEFVNHIKR
Disordered Region (DISPRO)
F*ILSHRKEKPPELTTFKLLFIIYVYVFFKKRKSLFVMEKHKCRLCFKNFSNGRAL****************************************************************LRENPKRSIRLVDPEF****************************************************************************************EEDQQQHHHDLIMFRQQ********************************RGKYKCETCKKVFKSYQAL****************************************KVHECPVCFRVFSSGQAL****************************NLIDLNLPAPID*************DAEF******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
FPILSHRKEKPPELTTFKLLFIIYVYVFFKKRKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQEEEEEREHRPHHQQLSFEIETESASSPSSSTSPSEEDDEEKSLFYGLRENPKRSIRLVDPEFSFGVVDASAAAAAAASASVVLQDRESETESSKNPTRRRSKRTRKLEQQHRQELDIIKKLKLNKSKNTIESSLWGHEPEPVSSISDTTTEEDQQQHHHDLIMFRQQDDDEYEDEEAEKSMDETDESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLVASTSARSASASTKLGENLIDLNLPAPIDDDDISQIELSAVSDAEFVNHIKR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	413	2.2.26 [Sep-21-2011]
Q9M202	288	Zinc finger protein ZAT9	yes	no	0.665	0.954	0.396	9e-51
Q9SHD0	314	Zinc finger protein ZAT4	no	no	0.714	0.939	0.416	2e-43
Q39092	267	Zinc finger protein ZAT1	no	no	0.501	0.775	0.377	3e-27
Q681X4	286	Zinc finger protein ZAT5	no	no	0.302	0.437	0.35	3e-16
Q9SSW2	273	Zinc finger protein AZF2	no	no	0.193	0.293	0.506	2e-15
O65499	284	Zinc finger protein ZAT3	no	no	0.254	0.369	0.389	3e-14
Q9SIJ0	270	Zinc finger protein ZAT2	no	no	0.244	0.374	0.385	4e-14
Q9SSW0	193	Zinc finger protein AZF3	no	no	0.179	0.383	0.438	2e-13
Q9SSW1	245	Zinc finger protein AZF1	no	no	0.261	0.440	0.354	4e-13
O22533	238	Zinc finger protein ZAT6	no	no	0.256	0.445	0.382	4e-13

>sp|Q9M202|ZAT9_ARATH Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1

 Score =  201 bits (511), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 205/371 (55%), Gaps = 96/371 (25%)

Query: 38  MEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQEEEEEREHRPHHQQLSFEIETES 97
           ME +KCR+CFK+F NG+ALGGHMRSHM N            E E RP   QLS+E E++ 
Sbjct: 1   MESYKCRVCFKSFVNGKALGGHMRSHMSN----------SHEEEQRP--SQLSYETESDV 48

Query: 98  ASSPSSSTSPSEEDDEEKSLFYGLRENPKRSIRLVDPEFSFGVVDASAAAAAAASASVVL 157
           +SS                                DP+F+F             ++SV+L
Sbjct: 49  SSS--------------------------------DPKFAF-------------TSSVLL 63

Query: 158 QDRESETESSKNP---TRRRSKRTRKLEQQHRQELDIIKKLKLNKSKNTIESSLWGHEPE 214
           +D ESE+ESS+N    TR+RSKRTRKL+        + KK+K         +S  G++PE
Sbjct: 64  EDGESESESSRNVINLTRKRSKRTRKLDS------FVTKKVK---------TSQLGYKPE 108

Query: 215 -----PVSSISDTTTEEDQQQHHHDLIMFRQQDDDEYEDEEAEKSMDETDESEEFK-SFN 268
                P SS SDTTTEED       L+M  +   D+++  ++ K + E  E+EE    +N
Sbjct: 109 SDQEPPHSSASDTTTEEDLA---FCLMMLSR---DKWKKNKSNKEVVEEIETEEESEGYN 162

Query: 269 NKNR--SRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLAS 326
             NR  ++G+YKCETC KVFKSYQALGGHRASHKK +    V   + +Q +     N+  
Sbjct: 163 KINRATTKGRYKCETCGKVFKSYQALGGHRASHKKNR----VSNNKTEQRSETEYDNVV- 217

Query: 327 PPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLVASTSARSASASTKLGENLIDLNLP 386
             +  K++HECP+C RVF+SGQALGGHKR+H  G ++    R    +  + + +IDLNLP
Sbjct: 218 --VVAKRIHECPICLRVFASGQALGGHKRSHGVGNLSVNQQRRVHRNESVKQRMIDLNLP 275

Query: 387 APIDDDDISQI 397
           AP ++D++S +
Sbjct: 276 APTEEDEVSVV 286

Probable transcription factor that may be involved in stress responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHD0|ZAT4_ARATH Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1

 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 156/375 (41%), Positives = 201/375 (53%), Gaps = 80/375 (21%)

Query: 38  MEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQEEEEEREHRPHHQQLSFEIETES 97
           ME++KCR CFK+F NGRALGGHMRSHML L   + +               ++ E E E 
Sbjct: 1   MERYKCRFCFKSFINGRALGGHMRSHMLTLSAERCV---------------ITGEAEEEV 45

Query: 98  ASSPSSSTSPSEEDDEEKSLFYGLRENPKRSIRLVDP-EFSFGVVDASAAAAAAASASVV 156
              PS      ++ + + S   G  +N K + RL D  EF F   D              
Sbjct: 46  EERPSQLCDDDDDTESDASSSSGEFDNQKMN-RLDDELEFDFAEDD-------------- 90

Query: 157 LQDRESETESSK-NPTRRRSKRTRKLEQQHRQELDI-IKKLKLNKSKNTIESSLWGHEPE 214
             D ESETESS+ NPTRRRSKRTRKL        D   +KL  ++    +       EPE
Sbjct: 91  --DVESETESSRINPTRRRSKRTRKL-----GSFDFDFEKLTTSQPSELVA------EPE 137

Query: 215 PVSSISDTTTEEDQQQHHHDLIMFRQQDDDEYEDEEAEKSMDETD-ESEEFKSFNNKNRS 273
             SS SDTTTEED       LIM  +    + + ++     DETD +SE++KS    ++S
Sbjct: 138 HHSSASDTTTEEDLA---FCLIMLSRDKWKQQKKKKQRVEEDETDHDSEDYKS----SKS 190

Query: 274 RGKYKCETCKKVFKSYQALGGHRASHKKIK-FYTPVQETELDQENAGASINLASPPLSV- 331
           RG++KCETC KVFKSYQALGGHRASHKK K   T  ++ E +              L V 
Sbjct: 191 RGRFKCETCGKVFKSYQALGGHRASHKKNKACMTKTEQVETEY------------VLGVK 238

Query: 332 -KKVHECPVCFRVFSSGQALGGHKRTHVTGLVASTSARSASAS--------TKLGENLID 382
            KKVHECP+CFRVF+SGQALGGHKR+H + + A    R  S S          + + +ID
Sbjct: 239 EKKVHECPICFRVFTSGQALGGHKRSHGSNIGA---GRGLSVSQIVQIEEEVSVKQRMID 295

Query: 383 LNLPAPIDDDDISQI 397
           LNLPAP ++D+ S +
Sbjct: 296 LNLPAPNEEDETSLV 310

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39092|ZAT1_ARATH Zinc finger protein ZAT1 OS=Arabidopsis thaliana GN=ZAT1 PE=2 SV=1

 Score =  123 bits (309), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/265 (37%), Positives = 136/265 (51%), Gaps = 58/265 (21%)

Query: 147 AAAAASASVVLQDRESETESSKNPTRRRSKRTRK----LEQQHRQELDIIKKLKLNKSKN 202
           +++ A    VLQDRESETESSK P+R+RS+  R+    L  Q   E    +  +    K 
Sbjct: 41  SSSMADPGFVLQDRESETESSKKPSRKRSRLNRRSISSLRHQQSNEEGKSETARAADIKI 100

Query: 203 TI-ESSLWGHEPEPVSSISDT-TTEEDQQQHHHDLIMFRQQDDDEYEDEEAEKSMDETDE 260
            + E S    E EP+SS+SD  TTEED       L++                S D+ ++
Sbjct: 101 GVQELSESCTEQEPMSSVSDAATTEEDVAL---SLMLL---------------SRDKWEK 142

Query: 261 SEEFKSFNNKNRSRGKY-KCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAG 319
            EE        + R K+ +CETC+KVFKSYQALGGHRASHKK       +  E DQ   G
Sbjct: 143 EEEESDEERWKKKRNKWFECETCEKVFKSYQALGGHRASHKK-------KIAETDQ--LG 193

Query: 320 ASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHV---------TGLVASTSARSA 370
           +         S    HECP+C +VF+SGQALGGHKR+H          +G++ S      
Sbjct: 194 SDELKKKKKKSTSSHHECPICAKVFTSGQALGGHKRSHASANNEFTRRSGIIIS------ 247

Query: 371 SASTKLGENLIDLNLPAPIDDDDIS 395
                    LIDLNLPAP ++++++
Sbjct: 248 ---------LIDLNLPAPSEEEEMA 263

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q681X4|ZAT5_ARATH Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 35/160 (21%)

Query: 267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYT------PVQE--TELDQENA 318
            +++N S   Y+C+TC + F S+QALGGHRASHKK +  T      P+ +  +   +E  
Sbjct: 105 ISSENSSFYVYECKTCNRTFSSFQALGGHRASHKKPRTSTEEKTRLPLTQPKSSASEEGQ 164

Query: 319 GASINLASPPLS---------VKKVHECPVCFRVFSSGQALGGHKRTHVTGL-----VAS 364
            +   ++   L+           KVHEC +C   F+SGQALGGH R H T +     VA+
Sbjct: 165 NSHFKVSGSALASQASNIINKANKVHECSICGSEFTSGQALGGHMRRHRTAVTTISPVAA 224

Query: 365 TSARSASAS-----TKLGENL--------IDLNLPAPIDD 391
           T+  S +++       +G ++        +DLNLPAP DD
Sbjct: 225 TAEVSRNSTEEEIEINIGRSMEQQRKYLPLDLNLPAPEDD 264

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSW2|AZF2_ARATH Zinc finger protein AZF2 OS=Arabidopsis thaliana GN=AZF2 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 277 YKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLAS--PPLSVKKV 334
           YKC  C+K F SYQALGGH+ASH+ IK  T +  T  D      SI      P  +  K+
Sbjct: 106 YKCNVCEKAFPSYQALGGHKASHR-IKPPTVISTTADDSTAPTISIVAGEKHPIAASGKI 164

Query: 335 HECPVCFRVFSSGQALGGHKRTH 357
           HEC +C +VF +GQALGGHKR H
Sbjct: 165 HECSICHKVFPTGQALGGHKRCH 187

Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source.

Arabidopsis thaliana (taxid: 3702)

>sp|O65499|ZAT3_ARATH Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 13/118 (11%)

Query: 276 KYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASI--NLASPPLSVKK 333
           +++C  CKKVF S+QALGGHRASHK +K    +     D      S   +     L+   
Sbjct: 161 RFECGGCKKVFGSHQALGGHRASHKNVKGCFAITNVTDDPMTVSTSSGHDHQGKILTFSG 220

Query: 334 VHECPVCFRVFSSGQALGGHKRTHVTGLVASTSARSASASTKLGENLIDLNLPAPIDD 391
            H+C +CFRVFSSGQALGGH R H                  +    +DLN+P  I D
Sbjct: 221 HHKCNICFRVFSSGQALGGHMRCHW-----------EKEEEPMISGALDLNVPPTIQD 267

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIJ0|ZAT2_ARATH Zinc finger protein ZAT2 OS=Arabidopsis thaliana GN=ZAT2 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 62/127 (48%), Gaps = 26/127 (20%)

Query: 276 KYKCETCKKVFKSYQALGGHRASHKKIKFY----------TPVQETELDQENAGASINLA 325
           +++C+ CKKVF S+QALGGHRA+HK +K             P    E+  ++ G S+ L 
Sbjct: 147 RFECDGCKKVFGSHQALGGHRATHKDVKGCFANKNITEDPPPPPPQEIVDQDKGKSVKLV 206

Query: 326 SPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLVASTSARSASASTKLGENLIDLNL 385
           S        H C +C RVFSSGQALGGH R H          R            IDLN+
Sbjct: 207 S-----GMNHRCNICSRVFSSGQALGGHMRCHWEKDQEENQVRG-----------IDLNV 250

Query: 386 PAPIDDD 392
           PA    D
Sbjct: 251 PAATSSD 257

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSW0|AZF3_ARATH Zinc finger protein AZF3 OS=Arabidopsis thaliana GN=AZF3 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 49/89 (55%), Gaps = 15/89 (16%)

Query: 277 YKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHE 336
           YKC  C K F SYQALGGH+ASH+ +                G   N  S P +  K H 
Sbjct: 75  YKCGVCYKTFSSYQALGGHKASHRSL---------------YGGGENDKSTPSTAVKSHV 119

Query: 337 CPVCFRVFSSGQALGGHKRTHVTGLVAST 365
           C VC + F++GQALGGHKR H  G V+++
Sbjct: 120 CSVCGKSFATGQALGGHKRCHYDGGVSNS 148

Transcriptional repressor probably involved in abiotic stress responses. Binds DNA in a sequence-specific manner and can repress the transactivation activity of other transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSW1|AZF1_ARATH Zinc finger protein AZF1 OS=Arabidopsis thaliana GN=AZF1 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 63/144 (43%), Gaps = 36/144 (25%)

Query: 277 YKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQE------------NAGASINL 324
           YKC  C K F SYQALGGH+ SH+K    T    T  +QE                ++N 
Sbjct: 97  YKCTVCGKSFSSYQALGGHKTSHRKP---TNTSITSGNQELSNNSHSNSGSVVINVTVNT 153

Query: 325 ASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHV---------------TGLVASTSA-- 367
            +      K+H C +CF+ F+SGQALGGHKR H                  LVA +    
Sbjct: 154 GNGVSQSGKIHTCSICFKSFASGQALGGHKRCHYDGGNNGNGNGSSSNSVELVAGSDVSD 213

Query: 368 ----RSASASTKLGENLIDLNLPA 387
               R +  S   G    DLNLPA
Sbjct: 214 VDNERWSEESAIGGHRGFDLNLPA 237

Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner.

Arabidopsis thaliana (taxid: 3702)

>sp|O22533|ZAT6_ARATH Zinc finger protein ZAT6 OS=Arabidopsis thaliana GN=ZAT6 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 61/128 (47%), Gaps = 22/128 (17%)

Query: 277 YKCETCKKVFKSYQALGGHRASHKK-IKFYTPVQETELDQENAGASINLASPPLSVKKVH 335
           YKC  C K F SYQALGGH+ASH+K           EL   +A  +  ++       K H
Sbjct: 89  YKCSVCDKAFSSYQALGGHKASHRKSFSLTQSAGGDELSTSSAITTSGISGGGGGSVKSH 148

Query: 336 ECPVCFRVFSSGQALGGHKRTHVTGL--------------VASTSARSASASTKLGENLI 381
            C +C + F++GQALGGHKR H  G               V STS  S+      G    
Sbjct: 149 VCSICHKSFATGQALGGHKRCHYEGKNGGGVSSSVSNSEDVGSTSHVSS------GHRGF 202

Query: 382 DLNLPAPI 389
           DLN+P PI
Sbjct: 203 DLNIP-PI 209

Probable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis. Probably acts as a repressor of primary root growth and regulates Pi homeostasis through the control of root architecture.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
225453529	359	PREDICTED: zinc finger protein ZAT9-like	0.815	0.938	0.550	2e-94
224063685	332	predicted protein [Populus trichocarpa]	0.731	0.909	0.524	1e-92
356498260	389	PREDICTED: zinc finger protein ZAT9-like	0.835	0.886	0.487	9e-75
356496320	365	PREDICTED: zinc finger protein ZAT9-like	0.753	0.852	0.446	1e-74
358249138	388	uncharacterized protein LOC100780611 [Gl	0.806	0.858	0.441	1e-74
297734535	257	unnamed protein product [Vitis vinifera]	0.600	0.964	0.421	5e-67
224129930	289	predicted protein [Populus trichocarpa]	0.539	0.771	0.567	1e-61
224138600	315	predicted protein [Populus trichocarpa]	0.731	0.958	0.419	1e-57
449431964	317	PREDICTED: zinc finger protein ZAT9-like	0.615	0.801	0.504	8e-53
359495992	323	PREDICTED: zinc finger protein ZAT4-like	0.736	0.941	0.445	3e-51

>gi|225453529|ref|XP_002278670.1| PREDICTED: zinc finger protein ZAT9-like isoform 1 [Vitis vinifera]

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 219/398 (55%), Positives = 265/398 (66%), Gaps = 61/398 (15%)

Query: 38  MEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQEEEEEREHRPHHQQLSFEIETES 97
           MEKHKC+LCF++FSNGRALGGHMRSHMLNLPIP             P  +Q S   + E+
Sbjct: 1   MEKHKCKLCFRSFSNGRALGGHMRSHMLNLPIP-------------PKQEQPSQIGDDET 47

Query: 98  ASSPSSSTSPSEEDDEEKSLFYGLRENPKRSIRLVDPEFSFGVVDASAAAAAAASASVVL 157
            S+ SSS+S  E +D  K L Y LRENPK+SIRL DPEFSF V DA         ASVVL
Sbjct: 48  ESASSSSSSEEEGED--KGLGYELRENPKKSIRLADPEFSFAV-DA---------ASVVL 95

Query: 158 QDRESETESSKNPTRRRSKRTRKLEQQHRQELDIIKKLKLNKSKNTIESSLWGHEPEPVS 217
           QDRESETESSKNPTRRRSKR RKL           KK+KL+K   T ES  W  +PEPVS
Sbjct: 96  QDRESETESSKNPTRRRSKRNRKLGLADPPRFHEQKKIKLDKLSKT-ES--WA-DPEPVS 151

Query: 218 SISDTTTEEDQQQHHHDLIMFRQQDDDEYEDEE-----------------AEKSMDETDE 260
           SISD TTEED       +++ R +  +E E++E                  E+ +DETD+
Sbjct: 152 SISDATTEEDVA--FCLMMLSRDKWIEEQENQERRHDEEDEEEAEAEAEEEERFVDETDD 209

Query: 261 SEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGA 320
           S+E K F  K R+RGKYKCETC KVF+SYQALGGHRASHKKIK   P++E E + ENA  
Sbjct: 210 SDELKLF--KTRARGKYKCETCNKVFRSYQALGGHRASHKKIKACAPIKEVEFEPENA-- 265

Query: 321 SINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTG-----LVASTSARSASASTK 375
               ++P L+  K+HECPVCFR F+SGQALGGHKR+H++G        +       AS+K
Sbjct: 266 ----SNPCLADAKIHECPVCFRKFTSGQALGGHKRSHISGSAAAAAAPAPPPPPRKASSK 321

Query: 376 LGENLIDLNLPAPIDDDDISQIELSAVSDAEFVNHIKR 413
           +G+++IDLNLPAPI++DDISQIE SAVSDAEFVN I+R
Sbjct: 322 VGDSMIDLNLPAPIEEDDISQIEHSAVSDAEFVNPIRR 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063685|ref|XP_002301264.1| predicted protein [Populus trichocarpa] gi|222842990|gb|EEE80537.1| predicted protein [Populus trichocarpa]

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 213/406 (52%), Positives = 255/406 (62%), Gaps = 104/406 (25%)

Query: 38  MEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQEEEEEREHRPHHQQLSFEIETES 97
           MEKHKC+LCFK+FSNGRALGGHMRSHMLNLPIP K++++  + E                
Sbjct: 1   MEKHKCKLCFKSFSNGRALGGHMRSHMLNLPIPPKLEDQFPDIE---------------- 44

Query: 98  ASSPSSSTSPSEEDDEEKSLFYGLRENPKRSIRLVDPEFSFGVVDASAAAAAAASASVVL 157
                                             V+PEFSF  VDA          SVVL
Sbjct: 45  ----------------------------------VNPEFSFAAVDA---------GSVVL 61

Query: 158 QDRESETESSKNPTRRRSKRTRKLEQQH--------RQELD---IIKKL---KLNKSKNT 203
           QDRESETESSKNPTRRRSKRT+ L + H        RQE +   IIKKL   K+   K  
Sbjct: 62  QDRESETESSKNPTRRRSKRTKSLLEHHHQYHQQRPRQEQENNIIIKKLEFKKMGTIKAA 121

Query: 204 IESSLWGHEPEPVSSISDTTTEEDQQQHHHDLIMFRQQDDDEYEDEEAEKSMDE------ 257
            ESS WGHEPEPVSSIS TTTEED       L+M  +   D+++ +E E   +E      
Sbjct: 122 AESS-WGHEPEPVSSISGTTTEEDVA---FCLVMLSR---DKWKRKEQENQEEEQELEEE 174

Query: 258 -----TDESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETE 312
                TD+S+EFKS   K ++RGKYKCETC KVFKSYQALGGHRASHKK+K YTP  E +
Sbjct: 175 LAEAETDDSDEFKSC--KTKTRGKYKCETCNKVFKSYQALGGHRASHKKLKVYTPSNEPK 232

Query: 313 LDQ-ENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLVASTSARSAS 371
           L++ ENAGAS +L       KK HECP CFRVFSSGQALGGHKR+H+ G+ AS+S   A 
Sbjct: 233 LERTENAGASTSLPE-----KKTHECPYCFRVFSSGQALGGHKRSHLIGVAASSST-PAR 286

Query: 372 ASTKLGEN---LIDLNLPAPIDDDDISQI-ELSAVSDAEFVNHIKR 413
           +ST++G+N    IDLNLPAP+DDDDISQ+ +LSAVSDAEFVN+++R
Sbjct: 287 SSTRIGDNNWGFIDLNLPAPVDDDDISQVDQLSAVSDAEFVNYVRR 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498260|ref|XP_003517971.1| PREDICTED: zinc finger protein ZAT9-like [Glycine max]

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 201/412 (48%), Positives = 251/412 (60%), Gaps = 67/412 (16%)

Query: 38  MEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQEEEEEREHRPHHQQLSFEIETES 97
           M++HKC+LCF++F+NGRALGGHMRSHM+NLPI  K +E    R       QLSFE E+ S
Sbjct: 1   MDRHKCKLCFRSFANGRALGGHMRSHMMNLPI-SKPEELASSRT-----IQLSFEAESAS 54

Query: 98  ASSPSSSTSPSEEDDEEKSLFYGLRENPKRSIRLVDPEFSFGVVDASAAAAAAASASVVL 157
           +SS SSS    E+  +EK+L Y LRENPKRSIRLVDPEFSF        A AA + SV+L
Sbjct: 55  SSSSSSSDEEDED--DEKTLCYDLRENPKRSIRLVDPEFSF--------ATAADTGSVIL 104

Query: 158 QDRESETESSKN-PTRRRSKR---TRKLEQQHRQELDIIKKLKLN---KSKNTIESSLWG 210
            DRESE+ESSKN PTRR SKR          +      ++K  L    +S    ++  W 
Sbjct: 105 HDRESESESSKNNPTRRISKRPWNNNDNYYNNDTTNSSVRKKGLGFEHESTKKCKTESWV 164

Query: 211 HEPEPVSSISDTTTEEDQQQHHHDLIMF------RQQDDDE---YEDEEAE--------- 252
            + +P SS+SD TTEED       L+M       RQ+D D+   + + E +         
Sbjct: 165 -DHDPASSVSDATTEEDVA---FCLMMLSRDKWKRQRDQDQPCRFAERENQYEVEDQEEE 220

Query: 253 -----------KSMDETDESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKK 301
                      +   E  E  +  S   KNR RG+YKC+TC KVF+SYQALGGHRASHKK
Sbjct: 221 DDEEDEEDEDDEEAFEESEESQETSKQCKNRVRGRYKCDTCNKVFRSYQALGGHRASHKK 280

Query: 302 IKFYTPVQETEL--DQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVT 359
           IK     +E EL  +++ +G  + +       KK HECPVCFRVF+SGQALGGHKRTHVT
Sbjct: 281 IKVNGGGREQELEHNKKKSGTCVVVE------KKTHECPVCFRVFASGQALGGHKRTHVT 334

Query: 360 GLVASTSARSA---SASTKLGENLIDLNLPAPIDDDDISQIELSAVSDAEFV 408
           G  A+ +A +    S+S K G + IDLNLPAPID+DD SQIE SAVSDAEFV
Sbjct: 335 GSAATAAAIATTLPSSSAKFGNSFIDLNLPAPIDEDDASQIENSAVSDAEFV 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496320|ref|XP_003517016.1| PREDICTED: zinc finger protein ZAT9-like [Glycine max]

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 189/423 (44%), Positives = 241/423 (56%), Gaps = 112/423 (26%)

Query: 38  MEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQEEEEEREHRPHHQQLSFEIETES 97
           MEKHKC+LC ++F+NGRALGGHMRSHMLNLP+P K      + E  P   QLSFE ++  
Sbjct: 1   MEKHKCKLCLRSFANGRALGGHMRSHMLNLPVPPK------QSEFVP--IQLSFEADSSP 52

Query: 98  ASSPSSSTSPSEEDDEEKSLFYGLRENPKRSIRLVDPEFSFGVVDASAAAAAAASASVVL 157
           + S SS              FYGLRENPK+S R  DPEF+F         AAA + SV+L
Sbjct: 53  SQSSSS--------------FYGLRENPKKSFRFADPEFAF---------AAADTGSVIL 89

Query: 158 QDRESETESSKNPTRRRSKRTRKLEQQHRQ--------ELDIIKKLKLNKSKNTIESSLW 209
           QDRESETESS+NPTR RSKR  +L              E  I+K  K++K+         
Sbjct: 90  QDRESETESSRNPTRTRSKRAWQLGGDGGGGGGGSGESEKKIMKVCKISKTN-------- 141

Query: 210 GHEPEPVSSISDTTTEEDQQQHHHDLIMFRQQDDDEYEDEEAEKSMDETD---------- 259
               E  SS+SDTT EED       L+M  +   D++++E     + + D          
Sbjct: 142 ----ESASSVSDTTREEDVA---FCLMMLSR---DKWKEENINNLLYDHDQDDDEDEEDD 191

Query: 260 ------------ESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKF--- 304
                       ESEE     + N+ RG+YKCETC+KVF+SYQALGGHRASHKKIK    
Sbjct: 192 EEDENNEDDDGYESEEKSLKKSNNKVRGRYKCETCEKVFRSYQALGGHRASHKKIKLNNN 251

Query: 305 --YTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTG-- 360
                  E EL+ ++           +  KK+HECPVCFRVF+SGQALGGHKRTHV G  
Sbjct: 252 NNNNNNNEGELEVQHV----------VVEKKIHECPVCFRVFASGQALGGHKRTHVIGSS 301

Query: 361 ----------LVASTSARSASASTKLGENLIDLNLPAPI-----DDDDISQIELSAVSDA 405
                      VA+ S R+AS +T++G++LIDLNLPAP+     +++D+SQ + SAVSDA
Sbjct: 302 TAATTVSVRSSVATVSVRTAS-TTRVGDSLIDLNLPAPVDDDEEEEEDVSQFDDSAVSDA 360

Query: 406 EFV 408
           EFV
Sbjct: 361 EFV 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249138|ref|NP_001239999.1| uncharacterized protein LOC100780611 [Glycine max] gi|255641017|gb|ACU20788.1| unknown [Glycine max]

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 187/424 (44%), Positives = 241/424 (56%), Gaps = 91/424 (21%)

Query: 38  MEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQEEEEEREHRPHHQQLSFEIETES 97
           MEKHKC+LC ++F+NGRALGGHMRSHM+NLP+P K      + E  P   QLSFE E+  
Sbjct: 1   MEKHKCKLCLRSFANGRALGGHMRSHMMNLPVPPK------QSELVP--IQLSFEAESSP 52

Query: 98  ASSPSSSTSPSEEDDEEKSLFYGLRENPKRSIRLVDPEFSFGVVDASAAAAAAASASVVL 157
           + S SS              FYGLRENPK++ R  DPEFSF         AAA ++SV+L
Sbjct: 53  SQSSSS--------------FYGLRENPKKNFRFADPEFSF---------AAAETSSVIL 89

Query: 158 QDRESETESSKNPTRRRSKRTRKLEQQHRQELDIIKKLKLNKSKNTIESSLWGHEPEPVS 217
           QDRESETESS+NPTRRRSKR    +Q            +  K    +  ++  +  E  S
Sbjct: 90  QDRESETESSRNPTRRRSKRA--WQQLGGDSGGGGVSDESEKKMMKVFDAVNKNNNESAS 147

Query: 218 SISDTTTEE-----------DQQQHHHDLIMFRQQDDDEYE--------------DEEAE 252
           S+SDTTTEE           D+ + ++ L+      D++ E              DEE E
Sbjct: 148 SVSDTTTEEAVAFCLMMLSRDKWKENNKLLY-----DNKVEIAEYNDDYDDEEDEDEEEE 202

Query: 253 KSMDETDESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKF---YTPVQ 309
           +  +  +  EE KS    N+ RG+YKCETC+KVF+SYQALGGHRASHKKIK        +
Sbjct: 203 EDEEIYESEEELKSVKKSNKVRGRYKCETCEKVFRSYQALGGHRASHKKIKLNNCENKNK 262

Query: 310 ETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTG--------- 360
               + ++    + +    +  KK+HECPVCFRVF+SGQALGGHKRTHV G         
Sbjct: 263 NNNNNNDDEAEQLEVQHVVVVEKKIHECPVCFRVFASGQALGGHKRTHVIGSSTAAATTT 322

Query: 361 -----------LVASTSARSASASTKLGENLIDLNLPAPIDDD-----DISQIELSAVSD 404
                       VA+ S R+ S +  +G++LIDLNLPAP+DDD     ++SQ E SAVSD
Sbjct: 323 ATAITTVSVRNSVATVSVRTTSTARVVGDSLIDLNLPAPMDDDEEEEGNVSQFEDSAVSD 382

Query: 405 AEFV 408
           AEFV
Sbjct: 383 AEFV 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734535|emb|CBI16586.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 169/401 (42%), Positives = 209/401 (52%), Gaps = 153/401 (38%)

Query: 22  IIYVYVFFKKRKSLFV----MEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQEEE 77
           +I+VY+ + +     +    MEKHKC+LCF++FSNGRALGGHMRSHMLNLPIP K QE+ 
Sbjct: 1   MIFVYIAWWRNACHLLLLRKMEKHKCKLCFRSFSNGRALGGHMRSHMLNLPIPPK-QEQP 59

Query: 78  EEREHRPHHQQLSFEIETESASSPSSSTSPSEEDDEEKSLFYGLRENPKRSIRLVDPEFS 137
           +                                             NPK+SIRL DPEFS
Sbjct: 60  K---------------------------------------------NPKKSIRLADPEFS 74

Query: 138 FGVVDASAAAAAAASASVVLQDRESETESSKNPTRRRSKRTRKLEQQHRQELDIIKKLKL 197
           F V  AS                                              + KK+KL
Sbjct: 75  FAVDAAS----------------------------------------------VQKKIKL 88

Query: 198 NKSKNTIESSLWGHEPEPVSSISDTTTEEDQQQHHHDLIMFRQQDDDEYEDEEAEKSMDE 257
           +K   T ES  W  +PEPVSSISD TTEED        + F                   
Sbjct: 89  DKLSKT-ES--WA-DPEPVSSISDATTEED--------VAF------------------- 117

Query: 258 TDESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQEN 317
                          SRGKYKCETC KVF+SYQALGGHRASHKKIK   P++E E + EN
Sbjct: 118 ---------------SRGKYKCETCNKVFRSYQALGGHRASHKKIKACAPIKEVEFEPEN 162

Query: 318 AGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLVASTSARSAS-----A 372
           A      ++P L+  K+HECPVCFR F+SGQALGGHKR+H++G  A+ +A +       A
Sbjct: 163 A------SNPCLADAKIHECPVCFRKFTSGQALGGHKRSHISGSAAAAAAPAPPPPPRKA 216

Query: 373 STKLGENLIDLNLPAPIDDDDISQIELSAVSDAEFVNHIKR 413
           S+K+G+++IDLNLPAPI++DDISQIE SAVSDAEFVN I+R
Sbjct: 217 SSKVGDSMIDLNLPAPIEEDDISQIEHSAVSDAEFVNPIRR 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129930|ref|XP_002320706.1| predicted protein [Populus trichocarpa] gi|222861479|gb|EEE99021.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 152/268 (56%), Positives = 176/268 (65%), Gaps = 45/268 (16%)

Query: 148 AAAASASVVLQDRESETESSKNPTRRRSKRTRKLEQQH---------RQEL---DIIKKL 195
           AAA + SVVLQDRESETESSKNPTRRRSKRT +L + H         RQE    +I+KKL
Sbjct: 47  AAADAGSVVLQDRESETESSKNPTRRRSKRTERLLENHHHQYHQQRPRQEQENNNIVKKL 106

Query: 196 KLNKS---KNTIESSLWGHEPEPVSSISDTTTEEDQQQHHHDLIMFRQQDDDEYEDEEAE 252
           +L K    K   ESS  G EPEPVSSISDTTTEED       L+M  +   D ++ +E E
Sbjct: 107 ELKKMGTFKAAAESS-SGQEPEPVSSISDTTTEEDVA---FCLMMLSR---DRWKRKEQE 159

Query: 253 KSMDETDESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETE 312
              ++    EE             YKCETC KVFKSYQALGGHRASHKK+K YTP +E  
Sbjct: 160 NQEEDRGLEEE-------------YKCETCNKVFKSYQALGGHRASHKKLKVYTPSKEPN 206

Query: 313 LD-QENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLVASTSARSAS 371
           L+  ENAGAS +L       KK+H CP C RVFSSGQALGGHKR+HV G+ AS+S   A 
Sbjct: 207 LEPTENAGASTSLPE-----KKIHGCPFCLRVFSSGQALGGHKRSHVIGVAASSST-PAR 260

Query: 372 ASTKLGEN---LIDLNLPAPIDDDDISQ 396
           +STK G+N   LIDLNLPAP+DDDDISQ
Sbjct: 261 SSTKFGDNNLGLIDLNLPAPVDDDDISQ 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138600|ref|XP_002326643.1| predicted protein [Populus trichocarpa] gi|222833965|gb|EEE72442.1| predicted protein [Populus trichocarpa]

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 160/381 (41%), Positives = 212/381 (55%), Gaps = 79/381 (20%)

Query: 38  MEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQEEEEEREHRPHHQQLSFEIETES 97
           ME+HKC+LC + F NGRALGGHM++H+                  R     L  + E E 
Sbjct: 1   MERHKCKLCVRTFPNGRALGGHMKAHLAAT---------------RQQLGGLDLQEEQE- 44

Query: 98  ASSPSSSTSPSEEDDEEKSLFYGLRENPKRSIRLVDPEFSFGVVDASAAAAAAASASVVL 157
                      +E  EEKSL YGLRENPK+S RL DPEFSF V           + SVV+
Sbjct: 45  -------IIKIKEAVEEKSLAYGLRENPKKSCRLADPEFSFAV----------DTGSVVV 87

Query: 158 QDRESETESSKNPTRRRSKRTRK---LEQQHRQELDIIKKLKLNKSKNTIESSLWGH--- 211
           QDRESETES +NPTRRRSKR RK     +  +Q+ D+ K +             WG    
Sbjct: 88  QDRESETES-RNPTRRRSKRIRKSCGFGESQKQDFDVKKVVDFKNPS-------WGESSS 139

Query: 212 --EPEPVSSISDTTTEEDQQQHHHDLI--MFRQQDDDEYEDE---EAEKSMDETDESEEF 264
             EPEPVSS+SDT+ EED  +    L   ++ + D++E +++   + EKS+D  +E+EE 
Sbjct: 140 PAEPEPVSSVSDTSPEEDVARCLMMLSRDVWMRNDEEEVQEQGGKDGEKSVDMLEEAEEI 199

Query: 265 KSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINL 324
           K     N+ RGK++CE C K+F+S +AL GH+                +   NA  + N+
Sbjct: 200 KV----NKIRGKFRCEKCMKLFRSSRALSGHK---------------RICSLNATEARNI 240

Query: 325 ASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLVASTSARSASASTKLGENLIDLN 384
           A+   +  ++ ECP C RVF SGQALGGHKR+H+ G   ST+A  A  STKL  N+IDLN
Sbjct: 241 AAAGDANDRIFECPYCLRVFGSGQALGGHKRSHLIGSSTSTNA-VAEVSTKLENNMIDLN 299

Query: 385 LPAPIDDDDISQIELSAVSDA 405
           LPAP++DD     E S VSDA
Sbjct: 300 LPAPVEDD-----EFSVVSDA 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431964|ref|XP_004133770.1| PREDICTED: zinc finger protein ZAT9-like [Cucumis sativus] gi|449532473|ref|XP_004173205.1| PREDICTED: zinc finger protein ZAT9-like [Cucumis sativus]

 Score =  214 bits (544), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 191/309 (61%), Gaps = 55/309 (17%)

Query: 133 DPEFSFGVVDASAAAAAAASASVVLQDRESETESSKNPTRRRSKRT----RKLEQQHRQE 188
           DPEFSF  VDA         ASVVLQDRESETESSKNPTRRRSKRT    R+        
Sbjct: 36  DPEFSF-AVDA---------ASVVLQDRESETESSKNPTRRRSKRTRKPDRRHHHHLHHH 85

Query: 189 LDIIKKLKLNKSKNTIESSLWGHEPEPVSSISDTTTEEDQQQHHHDLIMFRQQDDDEYED 248
            ++ K+L+  K  N  ES  W  E EPVSSIS +TTEED       L+M  +   D++  
Sbjct: 86  YNVFKRLQ-EKKMNHPES--WT-EAEPVSSISGSTTEEDVA---FWLMMLSR---DKWTK 135

Query: 249 EEA------------------------EKSMDETDESEEFKSFNNKNRSRGKYKCETCKK 284
           ++                         E+SM+ETD+SE  K    KNR+RG YKCETC K
Sbjct: 136 QQGGYEEEEDEEDEDEDEDEEEEEEELEESMEETDDSEAVKF--PKNRNRGNYKCETCNK 193

Query: 285 VFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVF 344
           VF+SYQALGGHRASHKKIK        +L   +  A+   +S  ++ +K+HECPVCFRVF
Sbjct: 194 VFRSYQALGGHRASHKKIKVSLTYNNPQLGSHHENAATP-SSGSMAERKIHECPVCFRVF 252

Query: 345 SSGQALGGHKRTHVTGLVASTSARSASASTKLGENLIDLNLPAPIDDDDISQIELSAVSD 404
           SSGQALGGHKR+HVTG     S    +A  K  ++LIDLNLPAP ++DD+SQIELSAVSD
Sbjct: 253 SSGQALGGHKRSHVTGY----SNPPKAAQKKFPDSLIDLNLPAPFEEDDVSQIELSAVSD 308

Query: 405 AEFVNHIKR 413
           A+FVN I++
Sbjct: 309 ADFVNAIRQ 317

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495992|ref|XP_003635129.1| PREDICTED: zinc finger protein ZAT4-like [Vitis vinifera]

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 175/393 (44%), Positives = 217/393 (55%), Gaps = 89/393 (22%)

Query: 38  MEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQEEEEEREHRPHHQQLSFEIETES 97
           MEKHKC+LC + FS+GRALGGHMRSH+  LPIP K           P H   +  + + S
Sbjct: 1   MEKHKCKLCSRRFSSGRALGGHMRSHLATLPIPPKT----------PQHSDRTDPVSSSS 50

Query: 98  ASSPSSSTSPSEEDDEE---KSLFYGLRENPKRSIRLVDPEFSFGVVDASAAAAAAASAS 154
           +SS S      EE   E   K+L YGLRENPKRS RL DPEFSF V            A 
Sbjct: 51  SSSSSEEEEEGEEQRSEGEEKALAYGLRENPKRSFRLADPEFSFAV-----------DAG 99

Query: 155 VVLQDRESETESSKNPTRRRSKRTRKLEQQHRQELDIIKKLKLNKSKNTIESSLWGHEPE 214
            V+QDRESETES +NPTRRRSKR  KL   + Q LD+ KK KL KS+ T   +    E E
Sbjct: 100 SVVQDRESETES-RNPTRRRSKRAWKLGVPN-QGLDL-KKPKLGKSETTESPT----ELE 152

Query: 215 PVSSISDTTTEEDQQQHHHDLIMF------RQQDDDEYEDEEAEKSMDETDESEEFKSFN 268
           PVSS+S+T  EED       L+M       R  +D + +DEE E+S+DET          
Sbjct: 153 PVSSVSNTWPEEDIAMC---LVMLSRDTWTRSDEDQDIKDEE-ERSVDET---------- 198

Query: 269 NKNRSRGKYKCETCKKVFKSYQALGG----HRASHKKIKFYTPVQETELDQENAGASINL 324
                        CKKVF S++A       ++AS KKIK      E E + EN G   N+
Sbjct: 199 -------------CKKVFSSFEASPVEKVVNKASKKKIK---ACFEDESNPENGG---NV 239

Query: 325 ASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLVASTSARSASAST----KLGENL 380
                   K++ECP C RVF SGQALGGHKR+H+     +T+A +A+A++    K    +
Sbjct: 240 --------KIYECPFCSRVFRSGQALGGHKRSHLLNNSTTTTAAAAAAASANSEKFQNGV 291

Query: 381 IDLNLPAPIDDDDISQIELSAVSDAEFV-NHIK 412
           IDLNLPAP +D   SQ   SAVS AEF+ N IK
Sbjct: 292 IDLNLPAPPEDYAFSQ--HSAVSYAEFIANTIK 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
TAIR|locus:2055583	314	AT2G45120 "AT2G45120" [Arabido	0.515	0.678	0.439	1.3e-49
TAIR|locus:2103311	288	AT3G60580 "AT3G60580" [Arabido	0.520	0.746	0.373	1.4e-44
TAIR|locus:2205649	267	AT1G02030 "AT1G02030" [Arabido	0.506	0.782	0.383	1.1e-42
TAIR|locus:2197890	455	AT1G26610 "AT1G26610" [Arabido	0.142	0.129	0.559	4.7e-23
TAIR|locus:2161168	304	AT5G61470 "AT5G61470" [Arabido	0.210	0.286	0.414	3.2e-20
TAIR|locus:2091201	273	ZF2 "AT3G19580" [Arabidopsis t	0.200	0.304	0.5	5.8e-17
TAIR|locus:2122118	284	DAZ2 "AT4G35280" [Arabidopsis	0.198	0.288	0.476	2.6e-16
TAIR|locus:2059672	270	DAZ1 "AT2G17180" [Arabidopsis	0.186	0.285	0.456	1e-15
TAIR|locus:2083053	215	AT3G49930 "AT3G49930" [Arabido	0.256	0.493	0.393	1.6e-15
TAIR|locus:2156435	493	AT5G56200 "AT5G56200" [Arabido	0.208	0.174	0.447	1.8e-15

TAIR|locus:2055583 AT2G45120 "AT2G45120" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
 Identities = 108/246 (43%), Positives = 136/246 (55%)

Query:   159 DRESETESSK-NPTRRRSKRTRKLEQQHRQELDXXXXXXXXXXXXTIESSLWGHEPEPVS 217
             D ESETESS+ NPTRRRSKRTRKL      + D            T + S    EPE  S
Sbjct:    91 DVESETESSRINPTRRRSKRTRKLGSF---DFDFEKLT-------TSQPSELVAEPEHHS 140

Query:   218 SISDTTTEEDQQQHHHDLIMFRQQXXXXXXXXXXXXXXXXTD-ESEEFKSFNNKNRSRGK 276
             S SDTTTEED       LIM  +                 TD +SE++KS    ++SRG+
Sbjct:   141 SASDTTTEEDLA---FCLIMLSRDKWKQQKKKKQRVEEDETDHDSEDYKS----SKSRGR 193

Query:   277 YKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHE 336
             +KCETC KVFKSYQALGGHRASHKK K       T+ +Q      + +       KKVHE
Sbjct:   194 FKCETCGKVFKSYQALGGHRASHKKNKACM----TKTEQVETEYVLGVKE-----KKVHE 244

Query:   337 CPVCFRVFSSGQALGGHKRTHVTGL-----VXXXXXXXXXXXXKLGENLIDLNLPAPIDD 391
             CP+CFRVF+SGQALGGHKR+H + +     +             + + +IDLNLPAP ++
Sbjct:   245 CPICFRVFTSGQALGGHKRSHGSNIGAGRGLSVSQIVQIEEEVSVKQRMIDLNLPAPNEE 304

Query:   392 DDISQI 397
             D+ S +
Sbjct:   305 DETSLV 310

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2103311 AT3G60580 "AT3G60580" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 89/238 (37%), Positives = 126/238 (52%)

Query:   165 ESSKNPTRRRSKRTRKLEQQHRQELDXXXXXXXXXXXXTIESSLWGHEPE-----PVSSI 219
             ES    +R     TRK  ++ R+ LD             +++S  G++PE     P SS 
Sbjct:    67 ESESESSRNVINLTRKRSKRTRK-LDSFVTKK-------VKTSQLGYKPESDQEPPHSSA 118

Query:   220 SDTTTEEDQQQHHHDLIMFRQQXXXXXXXXXXXXXXXXTDESEEFKSFNNKNRSRGKYKC 279
             SDTTTEED       L+M  +                 T+E  E  +  N+  ++G+YKC
Sbjct:   119 SDTTTEEDLA---FCLMMLSRDKWKKNKSNKEVVEEIETEEESEGYNKINRATTKGRYKC 175

Query:   280 ETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPV 339
             ETC KVFKSYQALGGHRASHKK +    V   + +Q +     N+    +  K++HECP+
Sbjct:   176 ETCGKVFKSYQALGGHRASHKKNR----VSNNKTEQRSETEYDNVV---VVAKRIHECPI 228

Query:   340 CFRVFSSGQALGGHKRTHVTGLVXXXXXXXXXXXXKLGENLIDLNLPAPIDDDDISQI 397
             C RVF+SGQALGGHKR+H  G +             + + +IDLNLPAP ++D++S +
Sbjct:   229 CLRVFASGQALGGHKRSHGVGNLSVNQQRRVHRNESVKQRMIDLNLPAPTEEDEVSVV 286

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2205649 AT1G02030 "AT1G02030" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 94/245 (38%), Positives = 126/245 (51%)

Query:   156 VLQDRESETESSKNPTRRRSKRTRKL--EQQHRQELDXXXXXXXXXXXXTI---ESSLWG 210
             VLQDRESETESSK P+R+RS+  R+     +H+Q  +             I   E S   
Sbjct:    50 VLQDRESETESSKKPSRKRSRLNRRSISSLRHQQSNEEGKSETARAADIKIGVQELSESC 109

Query:   211 HEPEPVSSISDTTTEEDQQQHHHDLIMFRQQXXXXXXXXXXXXXXXXTDESEEFKSFNNK 270
              E EP+SS+SD  T E+      D+ +                    +DE E +K   NK
Sbjct:   110 TEQEPMSSVSDAATTEE------DVAL----SLMLLSRDKWEKEEEESDE-ERWKKKRNK 158

Query:   271 NRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLS 330
                   ++CETC+KVFKSYQALGGHRASHKK      + ET  DQ   G+         S
Sbjct:   159 -----WFECETCEKVFKSYQALGGHRASHKK-----KIAET--DQ--LGSDELKKKKKKS 204

Query:   331 VKKVHECPVCFRVFSSGQALGGHKRTHVTGLVXXXXXXXXXXXXKLGENLIDLNLPAPID 390
                 HECP+C +VF+SGQALGGHKR+H +                +  +LIDLNLPAP +
Sbjct:   205 TSSHHECPICAKVFTSGQALGGHKRSHASA------NNEFTRRSGIIISLIDLNLPAPSE 258

Query:   391 DDDIS 395
             +++++
Sbjct:   259 EEEMA 263

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2197890 AT1G26610 "AT1G26610" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 4.7e-23, Sum P(5) = 4.7e-23
 Identities = 33/59 (55%), Positives = 36/59 (61%)

Query:   333 KVHECPVCFRVFSSGQALGGHKRTHVTGLVXXXXXXXXXXXXKLGENLIDLNLPAPIDD 391
             K HECP+CFRVF SGQALGGHKR+H  G                   LIDLNLPAPID+
Sbjct:   397 KGHECPICFRVFKSGQALGGHKRSHFIGNQEHRTLVIQHQVAHEMHTLIDLNLPAPIDE 455

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2161168 AT5G61470 "AT5G61470" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
 Identities = 41/99 (41%), Positives = 60/99 (60%)

Query:   259 DESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENA 318
             DE+  +     + + + KY C+TC KV +SYQALGGHR SHK    Y  ++ +  D+   
Sbjct:   210 DENAYYGGKRKRGKKQSKYTCDTCGKVLRSYQALGGHRTSHK----YKRLKIS--DKNYF 263

Query:   319 GASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTH 357
             G        P+ V++ +EC +C R+F+SGQALGGHK+ H
Sbjct:   264 GED-----GPI-VRRQYECQICNRMFASGQALGGHKKIH 296

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2091201 ZF2 "AT3G19580" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.8e-17, P = 5.8e-17
 Identities = 43/86 (50%), Positives = 53/86 (61%)

Query:   277 YKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASP-PLSVK-KV 334
             YKC  C+K F SYQALGGH+ASH+ IK  T +  T  D      SI      P++   K+
Sbjct:   106 YKCNVCEKAFPSYQALGGHKASHR-IKPPTVISTTADDSTAPTISIVAGEKHPIAASGKI 164

Query:   335 HECPVCFRVFSSGQALGGHKRTHVTG 360
             HEC +C +VF +GQALGGHKR H  G
Sbjct:   165 HECSICHKVFPTGQALGGHKRCHYEG 190

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IEP;RCA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2122118 DAZ2 "AT4G35280" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
 Identities = 40/84 (47%), Positives = 50/84 (59%)

Query:   276 KYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASI--NLASPPLSVKK 333
             +++C  CKKVF S+QALGGHRASHK +K    +     D      S   +     L+   
Sbjct:   161 RFECGGCKKVFGSHQALGGHRASHKNVKGCFAITNVTDDPMTVSTSSGHDHQGKILTFSG 220

Query:   334 VHECPVCFRVFSSGQALGGHKRTH 357
              H+C +CFRVFSSGQALGGH R H
Sbjct:   221 HHKCNICFRVFSSGQALGGHMRCH 244

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2059672 DAZ1 "AT2G17180" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
 Identities = 42/92 (45%), Positives = 54/92 (58%)

Query:   276 KYKCETCKKVFKSYQALGGHRASHKKIK--FYT--------PVQETELDQENAGASINLA 325
             +++C+ CKKVF S+QALGGHRA+HK +K  F          P    E+  ++ G S+ L 
Sbjct:   147 RFECDGCKKVFGSHQALGGHRATHKDVKGCFANKNITEDPPPPPPQEIVDQDKGKSVKLV 206

Query:   326 SPPLSVKKVHECPVCFRVFSSGQALGGHKRTH 357
             S        H C +C RVFSSGQALGGH R H
Sbjct:   207 SG-----MNHRCNICSRVFSSGQALGGHMRCH 233

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

TAIR|locus:2083053 AT3G49930 "AT3G49930" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 52/132 (39%), Positives = 69/132 (52%)

Query:   277 YKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASI----NLASPPLSVK 332
             YKC  C K F SYQALGGH+ SH+K     PV    +D  N+  ++    N+++  +   
Sbjct:    94 YKCSVCGKSFPSYQALGGHKTSHRK-----PVS---VDVNNSNGTVTNNGNISNGLVGQS 145

Query:   333 -KVHECPVCFRVFSSGQALGGHKRTHVTGLVXXXXXXXXXXXXKLGENL--IDLNLPAP- 388
              K H C +CF+ F SGQALGGHKR H  G                G+N    DLNLPA  
Sbjct:   146 GKTHNCSICFKSFPSGQALGGHKRCHYDG----------GNGNSNGDNSHKFDLNLPADQ 195

Query:   389 IDDDDISQIELS 400
             + D+ I + +LS
Sbjct:   196 VSDETIGKSQLS 207

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

TAIR|locus:2156435 AT5G56200 "AT5G56200" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
 Identities = 47/105 (44%), Positives = 57/105 (54%)

Query:   273 SRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASI--------NL 324
             +R K+ C TC K F SYQALGGHRASH K+K    + E    + NA AS+         L
Sbjct:   338 AREKHVCVTCNKSFSSYQALGGHRASHNKVK----ILENHQARANAEASLLGTEAIITGL 393

Query:   325 ASPP---LSVKKVHE----CPVCFRVFSSGQALGGHKRTHVTGLV 362
             AS      S+   H     C +C + FS+GQALGGHKR H T  V
Sbjct:   394 ASAQGTNTSLSSSHNGDHVCNICHKSFSTGQALGGHKRCHWTAPV 438

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	413
pfam13912	27	pfam13912, zf-C2H2_6, C2H2-type zinc finger	1e-05
pfam13912	27	pfam13912, zf-C2H2_6, C2H2-type zinc finger	2e-05
pfam13912	27	pfam13912, zf-C2H2_6, C2H2-type zinc finger	0.002

>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 277 YKCETCKKVFKSYQALGGHRASHKK 301
           + C  C K F S QALGGH+ SH  
Sbjct: 2   HTCGVCGKTFSSLQALGGHKKSHCS 26

Length = 27

>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 334 VHECPVCFRVFSSGQALGGHKRTH 357
           VH C VC + FSS QALGGHK++H
Sbjct: 1   VHTCGVCGKTFSSLQALGGHKKSH 24

Length = 27

>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 41 HKCRLCFKNFSNGRALGGHMRSHM 64
          H C +C K FS+ +ALGGH +SH 
Sbjct: 2  HTCGVCGKTFSSLQALGGHKKSHC 25

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	413
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.89
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.89
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.76
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.73
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.48
KOG3576	267	consensus Ovo and related transcription factors [T	99.48
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.24
KOG3576	267	consensus Ovo and related transcription factors [T	99.2
KOG3608	467	consensus Zn finger proteins [General function pre	99.16
KOG3608	467	consensus Zn finger proteins [General function pre	99.14
PHA00733	128	hypothetical protein	98.92
PHA02768	55	hypothetical protein; Provisional	98.61
PHA00616	44	hypothetical protein	98.53
PHA02768	55	hypothetical protein; Provisional	98.46
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.38
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.37
PLN03086	567	PRLI-interacting factor K; Provisional	98.32
PLN03086	567	PRLI-interacting factor K; Provisional	98.22
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.19
KOG3993	500	consensus Transcription factor (contains Zn finger	98.06
PHA00616	44	hypothetical protein	98.04
PHA00732	79	hypothetical protein	98.02
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.98
KOG3993	500	consensus Transcription factor (contains Zn finger	97.98
PHA00733	128	hypothetical protein	97.86
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.77
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.72
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.7
smart00355	26	ZnF_C2H2 zinc finger.	97.65
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.61
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.37
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.29
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.23
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.21
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.19
PHA00732	79	hypothetical protein	96.83
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.73
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.72
smart00355	26	ZnF_C2H2 zinc finger.	96.44
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.25
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.8
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.5
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.48
PRK04860	160	hypothetical protein; Provisional	95.38
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.12
PRK04860	160	hypothetical protein; Provisional	95.06
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.05
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.13
KOG2893	341	consensus Zn finger protein [General function pred	92.23
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	91.75
COG5048	467	FOG: Zn-finger [General function prediction only]	91.09
COG5048	467	FOG: Zn-finger [General function prediction only]	90.68
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	90.0
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	89.9
KOG1146	1406	consensus Homeobox protein [General function predi	88.72
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	88.03
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	87.79
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	87.47
KOG2893	341	consensus Zn finger protein [General function pred	86.13
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	85.25
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	83.2
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	80.58

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.89  E-value=1.2e-23  Score=212.86  Aligned_cols=92  Identities=18%  Similarity=0.307  Sum_probs=81.5

Q ss_pred             CCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCC----CccccC---CcCcccC
Q 044606          273 SRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVK----KVHECP---VCFRVFS  345 (413)
Q Consensus       273 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~----kp~~C~---~C~k~F~  345 (413)
                      ...|..|-+|.|+....+.|+.|.|+|+||+||+|++|+.+|+  .+.+|+.|+.+|...    -+|.|+   +|.+.|.
T Consensus       602 ~TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFt--TkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kft  679 (958)
T KOG1074|consen  602 RTDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFT--TKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFT  679 (958)
T ss_pred             cCCccceeeeeecccchhhhhhhhhcccCcCccccccccchhc--cccchhhcccccccCccccccccCCchhhhccccc
Confidence            4467999999999999999999999999999999999999996  667888999888654    358999   9999999


Q ss_pred             CchhhcccccccccCCCCCCC
Q 044606          346 SGQALGGHKRTHVTGLVASTS  366 (413)
Q Consensus       346 ~~~~L~~H~r~H~~~~~~~~~  366 (413)
                      ..-.|..|+|+|.++..+...
T Consensus       680 n~V~lpQhIriH~~~~~s~g~  700 (958)
T KOG1074|consen  680 NAVTLPQHIRIHLGGQISNGG  700 (958)
T ss_pred             ccccccceEEeecCCCCCCCc
Confidence            999999999999977666543

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.89  E-value=3.6e-24  Score=193.44  Aligned_cols=90  Identities=21%  Similarity=0.283  Sum_probs=83.8

Q ss_pred             HHHHhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCc
Q 044606          263 EFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFR  342 (413)
Q Consensus       263 ~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k  342 (413)
                      .++-|++.|+  -+++|.+|||.|.+.+.|+.|+|+|||||||.|..|+++|  ....+|+.|+.+|.+.|+|+|..|+|
T Consensus       176 ALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAF--ADRSNLRAHmQTHS~~K~~qC~~C~K  251 (279)
T KOG2462|consen  176 ALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAF--ADRSNLRAHMQTHSDVKKHQCPRCGK  251 (279)
T ss_pred             HHhhHhhccC--CCcccccccccccchHHhhcccccccCCCCccCCcccchh--cchHHHHHHHHhhcCCccccCcchhh
Confidence            4566888886  7899999999999999999999999999999999999999  57789999999999999999999999


Q ss_pred             ccCCchhhcccccc
Q 044606          343 VFSSGQALGGHKRT  356 (413)
Q Consensus       343 ~F~~~~~L~~H~r~  356 (413)
                      +|+..+.|.+|...
T Consensus       252 sFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  252 SFALKSYLNKHSES  265 (279)
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999999764

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.76  E-value=1.8e-19  Score=163.08  Aligned_cols=109  Identities=19%  Similarity=0.221  Sum_probs=97.6

Q ss_pred             hhhhcccCcCcchHHHHHhhhhcC---CCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhh
Q 044606          249 EEAEKSMDETDESEEFKSFNNKNR---SRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLA  325 (413)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h  325 (413)
                      ..|.++...+....+|-.|++.|.   ..+-+.|.+|+|.|.+-..|+.|+|+|+  -+++|.+||+.|  .+..-|+.|
T Consensus       131 ~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaF--SRPWLLQGH  206 (279)
T KOG2462|consen  131 YKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAF--SRPWLLQGH  206 (279)
T ss_pred             eeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccc--cchHHhhcc
Confidence            345556677788888889988886   4788999999999999999999999998  689999999999  477789999


Q ss_pred             cCCCCCCCccccCCcCcccCCchhhcccccccccCC
Q 044606          326 SPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGL  361 (413)
Q Consensus       326 ~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~  361 (413)
                      +|+|||||||.|+.|+|+|+.+++|+.||+||.+--
T Consensus       207 iRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K  242 (279)
T KOG2462|consen  207 IRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVK  242 (279)
T ss_pred             cccccCCCCccCCcccchhcchHHHHHHHHhhcCCc
Confidence            999999999999999999999999999999998643

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.73  E-value=2.7e-18  Score=174.50  Aligned_cols=61  Identities=31%  Similarity=0.336  Sum_probs=55.5

Q ss_pred             cCCCCCCCCccchhhheeeeeeEEeeccccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCchhh
Q 044606            4 LSHRKEKPPELTTFKLLFIIYVYVFFKKRKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQKIQE   75 (413)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~~~~   75 (413)
                      +..++.||++.+.|.           ....+.....+|+|.||+|+|...++|+.|+|+||||+||.|+.|-
T Consensus       328 a~p~~~k~~~~~~~~-----------v~~~~~~~~~khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG  388 (958)
T KOG1074|consen  328 ASPGLLKEKNGSYFS-----------VEGPSEKPFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCG  388 (958)
T ss_pred             cCcccCCcccccccc-----------cccCCccccccchhhhhHhhcCchhhhhhhhhccCCCCCeeecccc
Confidence            567888999999888           9999999999999999999999999999999999999999975443

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.48  E-value=4.5e-15  Score=148.85  Aligned_cols=83  Identities=20%  Similarity=0.383  Sum_probs=78.3

Q ss_pred             cCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhh
Q 044606          271 NRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQAL  350 (413)
Q Consensus       271 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L  350 (413)
                      .+..+.|.|++|.|+|...+.|.+|.--|+|.+||+|.+|.++|+  .+-.|..|+|.|.|+|||.|..|+|+|+...+.
T Consensus       889 kte~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFK--HKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSY  966 (1007)
T KOG3623|consen  889 KTEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFK--HKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSY  966 (1007)
T ss_pred             cCccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhh--hhhhhhhhhhhccCCCcchhhhhhhhcccccch
Confidence            446688999999999999999999999999999999999999994  677899999999999999999999999999999


Q ss_pred             ccccc
Q 044606          351 GGHKR  355 (413)
Q Consensus       351 ~~H~r  355 (413)
                      ..||.
T Consensus       967 SQHMN  971 (1007)
T KOG3623|consen  967 SQHMN  971 (1007)
T ss_pred             Hhhhc
Confidence            99985

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.48  E-value=6.9e-15  Score=126.92  Aligned_cols=87  Identities=16%  Similarity=0.241  Sum_probs=77.6

Q ss_pred             cCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhh
Q 044606          271 NRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQAL  350 (413)
Q Consensus       271 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L  350 (413)
                      ..+...|.|.+|+|.|.....|.+|++-|...|.|-|..||+.|  .....|.+|+++|+|.+||+|..|+|+|+++-+|
T Consensus       112 ssd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgf--ndtfdlkrh~rthtgvrpykc~~c~kaftqrcsl  189 (267)
T KOG3576|consen  112 SSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGF--NDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSL  189 (267)
T ss_pred             CCCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcc--cchhhhhhhhccccCccccchhhhhHHHHhhccH
Confidence            34556799999999999999999999999999999999999999  4667799999999999999999999999999999


Q ss_pred             ccccccccc
Q 044606          351 GGHKRTHVT  359 (413)
Q Consensus       351 ~~H~r~H~~  359 (413)
                      ..|++.-+|
T Consensus       190 eshl~kvhg  198 (267)
T KOG3576|consen  190 ESHLKKVHG  198 (267)
T ss_pred             HHHHHHHcC
Confidence            999775544

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.24  E-value=2e-12  Score=130.11  Aligned_cols=105  Identities=16%  Similarity=0.217  Sum_probs=88.4

Q ss_pred             hhhcccCcCcchHHHHHhhhhc--CCCCccccCCccccccChhhhhhhhhhcCC-------------CcccCCCCCCccc
Q 044606          250 EAEKSMDETDESEEFKSFNNKN--RSRGKYKCETCKKVFKSYQALGGHRASHKK-------------IKFYTPVQETELD  314 (413)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~-------------~kp~~C~~C~~~f  314 (413)
                      .|..+...+.....++.|+...  ..+..|.|.+|..+|.+...|.+|+.+|..             .+-|+|..|+++|
T Consensus       212 tcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAF  291 (1007)
T KOG3623|consen  212 TCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAF  291 (1007)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhh
Confidence            3445556666777788887553  345569999999999999999999998864             3569999999999


Q ss_pred             ccccchhhhhhcCCCCCCCccccCCcCcccCCchhhcccccc
Q 044606          315 QENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRT  356 (413)
Q Consensus       315 ~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~  356 (413)
                      +  .+-.|..|+|+|.|+|||.|+-|+|+|+...++..||-.
T Consensus       292 K--fKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  292 K--FKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             h--hHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence            6  566899999999999999999999999999999999854

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.20  E-value=1.7e-12  Score=112.34  Aligned_cols=112  Identities=12%  Similarity=0.045  Sum_probs=94.4

Q ss_pred             hhhhhcccCcCcchHHHHHhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcC
Q 044606          248 DEEAEKSMDETDESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASP  327 (413)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~  327 (413)
                      ...|..+...+.-..-+..|++-|..-+.|.|..|||.|.....|++|+|+|+|.+||+|..|+++|++...  |..|.+
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcs--leshl~  194 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCS--LESHLK  194 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhcc--HHHHHH
Confidence            344666777888888899999999999999999999999999999999999999999999999999986554  444432


Q ss_pred             -CC----------CCCCccccCCcCcccCCchhhcccccccccCC
Q 044606          328 -PL----------SVKKVHECPVCFRVFSSGQALGGHKRTHVTGL  361 (413)
Q Consensus       328 -~h----------~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~  361 (413)
                       +|          ..+|.|.|..||.+-.....+..|++.|+...
T Consensus       195 kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S  239 (267)
T KOG3576|consen  195 KVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS  239 (267)
T ss_pred             HHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence             22          23678999999999999999999999998654

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.16  E-value=5.9e-12  Score=117.29  Aligned_cols=104  Identities=14%  Similarity=0.196  Sum_probs=81.9

Q ss_pred             cCcchHHHHHhhh-hcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCC-CCCC--
Q 044606          257 ETDESEEFKSFNN-KNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPP-LSVK--  332 (413)
Q Consensus       257 ~~~~~~~~~~~~~-~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~-h~g~--  332 (413)
                      +....+.+..|++ .|...|||+|+.|.+.|.+.+.|.+|..+|+ +-.|.|..-.+.|.....-.+.+|++- |.|.  
T Consensus       272 tc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np  350 (467)
T KOG3608|consen  272 TCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNP  350 (467)
T ss_pred             CCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCC
Confidence            3455667777765 4778999999999999999999999999999 678999984444444566667788764 4354  


Q ss_pred             CccccCCcCcccCCchhhcccccccccCC
Q 044606          333 KVHECPVCFRVFSSGQALGGHKRTHVTGL  361 (413)
Q Consensus       333 kp~~C~~C~k~F~~~~~L~~H~r~H~~~~  361 (413)
                      -+|.|..|.|.|++..+|.+|++..++-.
T Consensus       351 ~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~  379 (467)
T KOG3608|consen  351 ILYACHCCDRFFTSGKSLSAHLMKKHGFR  379 (467)
T ss_pred             CceeeecchhhhccchhHHHHHHHhhccc
Confidence            46999999999999999999977655433

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.14  E-value=1.8e-11  Score=114.16  Aligned_cols=111  Identities=17%  Similarity=0.140  Sum_probs=93.9

Q ss_pred             hhhhcccCcCcchHHHHHhhhhcCCCCccccCCccccccChhhhhhhhhh-cCCCcccCCCCCCcccccccchhhhhhcC
Q 044606          249 EEAEKSMDETDESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRAS-HKKIKFYTPVQETELDQENAGASINLASP  327 (413)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~kp~~C~~C~~~f~~~~~~~l~~h~~  327 (413)
                      .+|..+...+.....++.|+..|.  .-|+|+.|..+....+.|..|++. |+..|||+|+.|.+.|  .....|.+|..
T Consensus       238 fqC~~C~KrFaTeklL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c--~~esdL~kH~~  313 (467)
T KOG3608|consen  238 FQCAQCFKRFATEKLLKSHVVRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRC--VRESDLAKHVQ  313 (467)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHhh--hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhh--ccHHHHHHHHH
Confidence            344555556666777888888875  569999999999999999999986 9999999999999988  57778999999


Q ss_pred             CCCCCCccccCC--cCcccCCchhhcccccccccCCCCC
Q 044606          328 PLSVKKVHECPV--CFRVFSSGQALGGHKRTHVTGLVAS  364 (413)
Q Consensus       328 ~h~g~kp~~C~~--C~k~F~~~~~L~~H~r~H~~~~~~~  364 (413)
                      .|+ +-.|.|..  |..+|.+...|.+|++.|+.+..+.
T Consensus       314 ~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~  351 (467)
T KOG3608|consen  314 VHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPI  351 (467)
T ss_pred             hcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCC
Confidence            898 77899988  9999999999999999888555443

>PHA00733 hypothetical protein

Probab=98.92  E-value=4.5e-10  Score=93.65  Aligned_cols=95  Identities=16%  Similarity=0.142  Sum_probs=74.4

Q ss_pred             hHHHHHhhhhcCCCCccccCCccccccChhhhhhh--h---hhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCcc
Q 044606          261 SEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGH--R---ASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVH  335 (413)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H--~---~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~  335 (413)
                      .+++..+-......+++.|.+|.+.|.....|..|  +   ..+.+.+||.|..|++.|.  ....|..|++.|  +.+|
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fs--s~s~L~~H~r~h--~~~~  100 (128)
T PHA00733         25 LEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFS--SSVSLKQHIRYT--EHSK  100 (128)
T ss_pred             HHHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCC--CHHHHHHHHhcC--CcCc
Confidence            34455544444567889999999999888777665  2   1334588999999999994  666777888876  4689


Q ss_pred             ccCCcCcccCCchhhccccccccc
Q 044606          336 ECPVCFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       336 ~C~~C~k~F~~~~~L~~H~r~H~~  359 (413)
                      .|.+|++.|.....|..|++..++
T Consensus       101 ~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        101 VCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             cCCCCCCccCCHHHHHHHHHHhcC
Confidence            999999999999999999987765

>PHA02768 hypothetical protein; Provisional

Probab=98.61  E-value=2e-08  Score=69.47  Aligned_cols=37  Identities=14%  Similarity=0.357  Sum_probs=28.9

Q ss_pred             ccccCCccccccChhhhhhhhhhcCCCcccCCCCCCccc
Q 044606          276 KYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELD  314 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f  314 (413)
                      .|.|+.||+.|...++|..|+++|+  ++|+|..|++.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f   41 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRIS   41 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCccccee
Confidence            3899999999999999999999997  455555544444

>PHA00616 hypothetical protein

Probab=98.53  E-value=3.1e-08  Score=65.21  Aligned_cols=31  Identities=16%  Similarity=0.179  Sum_probs=29.6

Q ss_pred             ccccCcccccCCChhhhhhHHHhhcCCCCCC
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRSHMLNLPIP   70 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~   70 (413)
                      +|+|+.||+.|.+.+.|..|||.|+|++|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~   31 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLT   31 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccc
Confidence            6899999999999999999999999999984

>PHA02768 hypothetical protein; Provisional

Probab=98.46  E-value=5.5e-08  Score=67.33  Aligned_cols=45  Identities=11%  Similarity=-0.115  Sum_probs=38.9

Q ss_pred             ccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhcc
Q 044606          304 FYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGG  352 (413)
Q Consensus       304 p~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~  352 (413)
                      -|.|+.|++.|.  ...+|..|+++|+  ++|+|..|+|.|++.+.|..
T Consensus         5 ~y~C~~CGK~Fs--~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~~   49 (55)
T PHA02768          5 GYECPICGEIYI--KRKSMITHLRKHN--TNLKLSNCKRISLRTGEYIE   49 (55)
T ss_pred             ccCcchhCCeec--cHHHHHHHHHhcC--CcccCCcccceecccceeEE
Confidence            389999999994  6778899999998  79999999999998888753

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.38  E-value=1.3e-07  Score=54.19  Aligned_cols=23  Identities=48%  Similarity=0.811  Sum_probs=22.2

Q ss_pred             cccCcccccCCChhhhhhHHHhh
Q 044606           41 HKCRLCFKNFSNGRALGGHMRSH   63 (413)
Q Consensus        41 ~~C~iC~K~F~~~~~L~~HmR~H   63 (413)
                      |+|++|+|.|.+...|..||++|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.37  E-value=5.6e-08  Score=57.39  Aligned_cols=23  Identities=22%  Similarity=0.013  Sum_probs=11.5

Q ss_pred             hhhhhhhcCCCcccCCCCCCccc
Q 044606          292 LGGHRASHKKIKFYTPVQETELD  314 (413)
Q Consensus       292 L~~H~~~H~~~kp~~C~~C~~~f  314 (413)
                      |.+|+++|+|++||.|+.|++.|
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F   24 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSF   24 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEE
T ss_pred             HHHHhhhcCCCCCCCCCCCcCee
Confidence            55555555554444444444433

...

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.32  E-value=4.6e-07  Score=92.46  Aligned_cols=62  Identities=11%  Similarity=0.191  Sum_probs=28.2

Q ss_pred             ccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCccc
Q 044606          276 KYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVF  344 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F  344 (413)
                      .+.|..|++.|. ...|..|+++|+  ++|.|+ |+..+   ....|..|..+|...+++.|..|++.|
T Consensus       453 H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~---~R~~L~~H~~thCp~Kpi~C~fC~~~v  514 (567)
T PLN03086        453 HVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL---EKEQMVQHQASTCPLRLITCRFCGDMV  514 (567)
T ss_pred             CccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc---chhHHHhhhhccCCCCceeCCCCCCcc
Confidence            344555555443 344455544442  444554 44322   223444444444445555555555544

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.22  E-value=8.3e-07  Score=90.62  Aligned_cols=99  Identities=15%  Similarity=0.161  Sum_probs=77.6

Q ss_pred             hhcccCcCcchHHHHHhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccc--------cchhh
Q 044606          251 AEKSMDETDESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQEN--------AGASI  322 (413)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~--------~~~~l  322 (413)
                      |..+...+. ...++.|...+.  +++.|. ||+.| ....|..|+++|.+.+++.|.+|+..+...        ....|
T Consensus       456 C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~L  530 (567)
T PLN03086        456 CEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGM  530 (567)
T ss_pred             CCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhH
Confidence            444545553 567889998874  899999 99765 678999999999999999999999988411        13357


Q ss_pred             hhhcCCCCCCCccccCCcCcccCCchhhcccccc
Q 044606          323 NLASPPLSVKKVHECPVCFRVFSSGQALGGHKRT  356 (413)
Q Consensus       323 ~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~  356 (413)
                      ..|.... |.+++.|..||+.|..+ .|..|+..
T Consensus       531 t~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~  562 (567)
T PLN03086        531 SEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIA  562 (567)
T ss_pred             HHHHHhc-CCcceEccccCCeeeeh-hHHHHHHH
Confidence            8888875 89999999999998876 56666543

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.19  E-value=5.8e-07  Score=53.04  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=19.1

Q ss_pred             hhhhcCCCCCCCccccCCcCcccCC
Q 044606          322 INLASPPLSVKKVHECPVCFRVFSS  346 (413)
Q Consensus       322 l~~h~~~h~g~kp~~C~~C~k~F~~  346 (413)
                      |.+|+++|+|+|||.|++|++.|.+
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            5677777888888888888887763

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.06  E-value=1.5e-06  Score=83.52  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=32.9

Q ss_pred             EeeccccccccccccccCcccccCCChhhhhhHHHhhcC
Q 044606           27 VFFKKRKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        27 ~~~~~~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      ++-.|+=+.+.---|+|+-|+|+|.+...|.-|.|.|--
T Consensus       282 ~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKP  320 (500)
T KOG3993|consen  282 ALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKP  320 (500)
T ss_pred             HHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCC
Confidence            344566666677779999999999999999999999976

>PHA00616 hypothetical protein

Probab=98.04  E-value=1.4e-06  Score=57.37  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=31.9

Q ss_pred             ccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          276 KYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      ||+|..||+.|..++.|..|++.|+|++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            6899999999999999999999999999998864

>PHA00732 hypothetical protein

Probab=98.02  E-value=3.8e-06  Score=63.69  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=27.1

Q ss_pred             ccccCCccccccChhhhhhhhhh-cCCCcccCCCCCCccc
Q 044606          276 KYKCETCKKVFKSYQALGGHRAS-HKKIKFYTPVQETELD  314 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~kp~~C~~C~~~f  314 (413)
                      ||.|..|++.|.+...|..|++. |.+   +.|..|++.|
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF   37 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSY   37 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEe
Confidence            58899999999999999999874 653   3555555555

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.98  E-value=3.3e-06  Score=48.51  Aligned_cols=24  Identities=38%  Similarity=0.761  Sum_probs=20.7

Q ss_pred             cccCcccccCCChhhhhhHHHhhc
Q 044606           41 HKCRLCFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        41 ~~C~iC~K~F~~~~~L~~HmR~Ht   64 (413)
                      |.|++|++.|.+...|..||++|.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999999984

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=97.98  E-value=1.1e-06  Score=84.60  Aligned_cols=116  Identities=20%  Similarity=0.260  Sum_probs=73.9

Q ss_pred             hhhhhcccCcCcchHHHHHhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCC-CC-CCcccccccchhhhhh
Q 044606          248 DEEAEKSMDETDESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTP-VQ-ETELDQENAGASINLA  325 (413)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C-~~-C~~~f~~~~~~~l~~h  325 (413)
                      +.-|.-+...+++...|-.|.....-.--|+|..|+|+|+...||..|.|.|.-..--.- .. -.+.-. ......+.-
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~-~~rae~~ea  345 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAV-ETRAEVQEA  345 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhh-hhhhhhhhc
Confidence            344556667777777888887666556679999999999999999999999975321100 00 000000 000000011


Q ss_pred             cCC--CCCCCccccCCcCcccCCchhhcccccccccCCCCC
Q 044606          326 SPP--LSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLVAS  364 (413)
Q Consensus       326 ~~~--h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~~~~  364 (413)
                      .+.  ...+-.|.|.+|+|.|.+...|++|+-+|+......
T Consensus       346 ~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k  386 (500)
T KOG3993|consen  346 ERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAK  386 (500)
T ss_pred             cccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccch
Confidence            111  112347999999999999999999999998654443

>PHA00733 hypothetical protein

Probab=97.86  E-value=1.1e-05  Score=67.42  Aligned_cols=59  Identities=14%  Similarity=-0.004  Sum_probs=47.2

Q ss_pred             HHHhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcC
Q 044606          264 FKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASP  327 (413)
Q Consensus       264 ~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~  327 (413)
                      +..+... .+.++|.|..|++.|.+...|..|++.|  ..+|.|..|++.|.  ....|..|+.
T Consensus        62 l~~~~~~-~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~--~~~sL~~H~~  120 (128)
T PHA00733         62 LYKLLTS-KAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFR--NTDSTLDHVC  120 (128)
T ss_pred             HHhhccc-CCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccC--CHHHHHHHHH
Confidence            4444433 4588999999999999999999999987  45799999999995  5556666664

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.77  E-value=9.4e-06  Score=48.28  Aligned_cols=26  Identities=42%  Similarity=0.558  Sum_probs=24.3

Q ss_pred             ccccCcccccCCChhhhhhHHHhhcC
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      +|+|.+|++.|.+...|..|||.|..
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            58999999999999999999999964

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.72  E-value=2.2e-05  Score=72.97  Aligned_cols=71  Identities=23%  Similarity=0.367  Sum_probs=52.0

Q ss_pred             CCCccccCC--ccccccChhhhhhhhhh-cCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchh
Q 044606          273 SRGKYKCET--CKKVFKSYQALGGHRAS-HKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQA  349 (413)
Q Consensus       273 ~~~~~~C~~--C~k~F~~~~~L~~H~~~-H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~  349 (413)
                      ++|||+|++  |.|+|.....|+.|+.- |...+...-+.-.+            +.......|||.|++|+|+|.....
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~------------~~~F~~~~KPYrCevC~KRYKNlNG  413 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEK------------MNIFSAKDKPYRCEVCDKRYKNLNG  413 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccc------------cccccccCCceeccccchhhccCcc
Confidence            469999998  99999999999999764 54444332221111            1111334799999999999999999


Q ss_pred             hccccc
Q 044606          350 LGGHKR  355 (413)
Q Consensus       350 L~~H~r  355 (413)
                      |+.|..
T Consensus       414 LKYHr~  419 (423)
T COG5189         414 LKYHRK  419 (423)
T ss_pred             ceeccc
Confidence            999965

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.70  E-value=2.3e-05  Score=52.77  Aligned_cols=36  Identities=17%  Similarity=0.310  Sum_probs=26.4

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCC
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLP   68 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p   68 (413)
                      ....+.++.+||+|+..+.....|.+||.++++.+|
T Consensus        17 ~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   17 SKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             HhhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            345578999999999999999999999999988776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.65  E-value=3e-05  Score=45.12  Aligned_cols=25  Identities=40%  Similarity=0.622  Sum_probs=23.3

Q ss_pred             cccCcccccCCChhhhhhHHHhhcC
Q 044606           41 HKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        41 ~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      |+|..|++.|.....|..||+.|..
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~~   25 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHXX   25 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhcc
Confidence            6899999999999999999999864

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.61  E-value=8.9e-06  Score=46.40  Aligned_cols=23  Identities=43%  Similarity=0.817  Sum_probs=21.5

Q ss_pred             cccCCcCcccCCchhhccccccc
Q 044606          335 HECPVCFRVFSSGQALGGHKRTH  357 (413)
Q Consensus       335 ~~C~~C~k~F~~~~~L~~H~r~H  357 (413)
                      |.|++|++.|.+...|..|+++|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.37  E-value=6.5e-05  Score=43.70  Aligned_cols=24  Identities=38%  Similarity=0.721  Sum_probs=22.3

Q ss_pred             cccCcccccCCChhhhhhHHHhhc
Q 044606           41 HKCRLCFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        41 ~~C~iC~K~F~~~~~L~~HmR~Ht   64 (413)
                      |.|.+|.+.|.+...|+.||+.|.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~   24 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKK   24 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCC
Confidence            679999999999999999999873

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.29  E-value=6.5e-05  Score=44.59  Aligned_cols=26  Identities=46%  Similarity=0.696  Sum_probs=24.1

Q ss_pred             ccccCCcCcccCCchhhccccccccc
Q 044606          334 VHECPVCFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       334 p~~C~~C~k~F~~~~~L~~H~r~H~~  359 (413)
                      ||.|..|++.|.+...|..|++.|..
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            68999999999999999999999864

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.23  E-value=0.00011  Score=43.72  Aligned_cols=24  Identities=38%  Similarity=0.628  Sum_probs=21.8

Q ss_pred             ccccCcccccCCChhhhhhHHHhh
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRSH   63 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~H   63 (413)
                      +|-|.+|+|.|.+...|.+||+++
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccC
Confidence            588999999999999999999974

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.21  E-value=0.00017  Score=50.57  Aligned_cols=51  Identities=25%  Similarity=0.417  Sum_probs=33.9

Q ss_pred             ccccCCccccccChhhhhhhhhh-cCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhcccc
Q 044606          276 KYKCETCKKVFKSYQALGGHRAS-HKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHK  354 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~  354 (413)
                      .|.|++|++. .....|..|... |..+                             .+.+.|++|...+..  +|..|+
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~-----------------------------~~~v~CPiC~~~~~~--~l~~Hl   49 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRSE-----------------------------SKNVVCPICSSRVTD--NLIRHL   49 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcCC-----------------------------CCCccCCCchhhhhh--HHHHHH
Confidence            3788888884 456778888654 5432                             235677777776553  777787


Q ss_pred             cccc
Q 044606          355 RTHV  358 (413)
Q Consensus       355 r~H~  358 (413)
                      .+++
T Consensus        50 ~~~H   53 (54)
T PF05605_consen   50 NSQH   53 (54)
T ss_pred             HHhc
Confidence            7665

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.19  E-value=7.3e-05  Score=42.72  Aligned_cols=24  Identities=42%  Similarity=0.801  Sum_probs=20.3

Q ss_pred             cccCCcCcccCCchhhcccccccc
Q 044606          335 HECPVCFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       335 ~~C~~C~k~F~~~~~L~~H~r~H~  358 (413)
                      |.|++|++.|.+...|..|+++|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999999874

...

>PHA00732 hypothetical protein

Probab=96.83  E-value=0.0006  Score=51.71  Aligned_cols=26  Identities=35%  Similarity=0.409  Sum_probs=23.6

Q ss_pred             ccccCcccccCCChhhhhhHHHh-hcC
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRS-HML   65 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~-Htg   65 (413)
                      +|.|.+|++.|.....|++|||. |++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~   27 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL   27 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC
Confidence            58999999999999999999995 764

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.73  E-value=0.0004  Score=54.92  Aligned_cols=74  Identities=23%  Similarity=0.312  Sum_probs=22.5

Q ss_pred             ccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhccccccc
Q 044606          278 KCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTH  357 (413)
Q Consensus       278 ~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H  357 (413)
                      +|.+|+..|.....|..|+....+...-.....      .....+..+.+.. -...+.|.+|++.|.+...|..|++.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l------~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYL------VDPNRLLNYLRKK-VKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Ccccccccccccccccccccccccccccccccc------ccccccccccccc-cCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            599999999999999999976444221111000      0111111122111 123699999999999999999999975


Q ss_pred             c
Q 044606          358 V  358 (413)
Q Consensus       358 ~  358 (413)
                      .
T Consensus        74 ~   74 (100)
T PF12756_consen   74 H   74 (100)
T ss_dssp             T
T ss_pred             c
Confidence            4

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.72  E-value=0.00089  Score=38.89  Aligned_cols=21  Identities=29%  Similarity=0.570  Sum_probs=18.9

Q ss_pred             cccCcccccCCChhhhhhHHHh
Q 044606           41 HKCRLCFKNFSNGRALGGHMRS   62 (413)
Q Consensus        41 ~~C~iC~K~F~~~~~L~~HmR~   62 (413)
                      ..|++||++| +..+|..|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4799999999 99999999874

>smart00355 ZnF_C2H2 zinc finger

Probab=96.44  E-value=0.00083  Score=38.79  Aligned_cols=24  Identities=50%  Similarity=0.815  Sum_probs=22.0

Q ss_pred             cccCCcCcccCCchhhcccccccc
Q 044606          335 HECPVCFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       335 ~~C~~C~k~F~~~~~L~~H~r~H~  358 (413)
                      |.|..|++.|.....|..|+++|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999999775

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.25  E-value=0.0024  Score=36.56  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             cccCcccccCCChhhhhhHHHhhcC
Q 044606           41 HKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        41 ~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      |+|++|.-... ...|.+||+.|.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            78999999888 9999999999764

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.80  E-value=0.0053  Score=41.55  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=24.5

Q ss_pred             cCCCCccccCCccccccChhhhhhhhhhcCCCcc
Q 044606          271 NRSRGKYKCETCKKVFKSYQALGGHRASHKKIKF  304 (413)
Q Consensus       271 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp  304 (413)
                      +....|..|++|+..+.+..+|.+|+.++.+.||
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            4567899999999999999999999988877664

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.50  E-value=0.0032  Score=36.36  Aligned_cols=23  Identities=35%  Similarity=0.671  Sum_probs=21.2

Q ss_pred             cccCCcCcccCCchhhccccccc
Q 044606          335 HECPVCFRVFSSGQALGGHKRTH  357 (413)
Q Consensus       335 ~~C~~C~k~F~~~~~L~~H~r~H  357 (413)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            67999999999999999999875

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.48  E-value=0.0074  Score=35.65  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=21.3

Q ss_pred             cccCCcCcccCCchhhccccccc
Q 044606          335 HECPVCFRVFSSGQALGGHKRTH  357 (413)
Q Consensus       335 ~~C~~C~k~F~~~~~L~~H~r~H  357 (413)
                      |.|.+|++.|.+...|..|++++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCcccCCCCcCCHHHHHHHHccC
Confidence            78999999999999999999864

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK04860 hypothetical protein; Provisional

Probab=95.38  E-value=0.0077  Score=52.17  Aligned_cols=35  Identities=17%  Similarity=0.318  Sum_probs=17.8

Q ss_pred             ccccCCccccccChhhhhhhhhhcCCCcccCCCCCCccc
Q 044606          276 KYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELD  314 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f  314 (413)
                      +|.|. |++   ....+.+|.++|+++++|.|..|+..+
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l  153 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETL  153 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCcee
Confidence            35554 554   444455555555555555544444443

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.12  E-value=0.011  Score=46.45  Aligned_cols=25  Identities=40%  Similarity=0.715  Sum_probs=22.5

Q ss_pred             ccccCcccccCCChhhhhhHHHhhc
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~Ht   64 (413)
                      .+.|.+|++.|.+...|+.||+.|.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCcc
Confidence            6999999999999999999999864

>PRK04860 hypothetical protein; Provisional

Probab=95.06  E-value=0.0075  Score=52.23  Aligned_cols=40  Identities=13%  Similarity=0.048  Sum_probs=33.5

Q ss_pred             cccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCch
Q 044606          303 KFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQ  348 (413)
Q Consensus       303 kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~  348 (413)
                      -+|.|. |+.     ....+.+|.++|+|+++|.|..|++.|....
T Consensus       118 ~~Y~C~-C~~-----~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE-----HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC-----eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            369997 876     4456889999999999999999999987654

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.05  E-value=0.013  Score=36.73  Aligned_cols=25  Identities=20%  Similarity=0.586  Sum_probs=22.5

Q ss_pred             cccccCcccccCCChhhhhhHHHhh
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSH   63 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~H   63 (413)
                      .+|.|.+|++.|.....|..|++..
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChH
Confidence            4689999999999999999999863

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.13  E-value=0.0099  Score=33.97  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=18.7

Q ss_pred             cccCCcCcccCCchhhccccccccc
Q 044606          335 HECPVCFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       335 ~~C~~C~k~F~~~~~L~~H~r~H~~  359 (413)
                      |+|+.|..... ...|.+|+++|++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            68999998887 8899999998763

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=92.23  E-value=0.053  Score=48.92  Aligned_cols=47  Identities=28%  Similarity=0.518  Sum_probs=34.2

Q ss_pred             ccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhccc-ccc
Q 044606          278 KCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGH-KRT  356 (413)
Q Consensus       278 ~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H-~r~  356 (413)
                      -|.+|++-|.....|..|++                                  .|.|+|.+|.|..-+.-.|..| |++
T Consensus        12 wcwycnrefddekiliqhqk----------------------------------akhfkchichkkl~sgpglsihcmqv   57 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQK----------------------------------AKHFKCHICHKKLFSGPGLSIHCMQV   57 (341)
T ss_pred             eeeecccccchhhhhhhhhh----------------------------------hccceeeeehhhhccCCCceeehhhh
Confidence            47788888877777766642                                  4567888888887778788887 556


Q ss_pred             cc
Q 044606          357 HV  358 (413)
Q Consensus       357 H~  358 (413)
                      |.
T Consensus        58 hk   59 (341)
T KOG2893|consen   58 HK   59 (341)
T ss_pred             hh
Confidence            64

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=91.75  E-value=0.053  Score=31.42  Aligned_cols=21  Identities=33%  Similarity=0.746  Sum_probs=16.7

Q ss_pred             cccCCcCcccCCchhhcccccc
Q 044606          335 HECPVCFRVFSSGQALGGHKRT  356 (413)
Q Consensus       335 ~~C~~C~k~F~~~~~L~~H~r~  356 (413)
                      ..|+.||+.| ....|.+|+++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4799999999 66788888754

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=91.09  E-value=0.28  Score=48.91  Aligned_cols=71  Identities=14%  Similarity=0.038  Sum_probs=48.6

Q ss_pred             CccccCCccccccChhhhhhhhh--hcCCC--cccCCC--CCCcccccccchhhhhhcCCCCCCCccccCC--cCcccCC
Q 044606          275 GKYKCETCKKVFKSYQALGGHRA--SHKKI--KFYTPV--QETELDQENAGASINLASPPLSVKKVHECPV--CFRVFSS  346 (413)
Q Consensus       275 ~~~~C~~C~k~F~~~~~L~~H~~--~H~~~--kp~~C~--~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~--C~k~F~~  346 (413)
                      .++.|..|...|.....|..|.+  .|+++  +++.|.  .|++.|  .....+..|..+|++.+++.|..  |.+.+..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLF--SRNDALKRHILLHTSISPAKEKLLNSSSKFSP  365 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccc--cccccccCCcccccCCCccccccccCcccccc
Confidence            46888888888888888888888  78887  777777  566666  35555666666777666666654  4444433


Q ss_pred             c
Q 044606          347 G  347 (413)
Q Consensus       347 ~  347 (413)
                      .
T Consensus       366 ~  366 (467)
T COG5048         366 L  366 (467)
T ss_pred             c
Confidence            3

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=90.68  E-value=0.2  Score=50.04  Aligned_cols=61  Identities=16%  Similarity=0.211  Sum_probs=50.3

Q ss_pred             hhcccCcCcchHHHHHhhh--hcCCC--CccccC--CccccccChhhhhhhhhhcCCCcccCCCCCC
Q 044606          251 AEKSMDETDESEEFKSFNN--KNRSR--GKYKCE--TCKKVFKSYQALGGHRASHKKIKFYTPVQET  311 (413)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~C~--~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~  311 (413)
                      +..+...+.....+..|.+  .|.++  +++.|.  .|++.|.....+..|...|++.+++.|....
T Consensus       292 ~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (467)
T COG5048         292 SKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLN  358 (467)
T ss_pred             CccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccccccc
Confidence            3444555666677788888  79999  999999  7999999999999999999999988775533

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=90.00  E-value=0.29  Score=34.09  Aligned_cols=25  Identities=32%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             ccccCcccccCCChhhhhhHHHh-hcC
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRS-HML   65 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~-Htg   65 (413)
                      .|.||+|++.|. ...|..|+.. |..
T Consensus         2 ~f~CP~C~~~~~-~~~L~~H~~~~H~~   27 (54)
T PF05605_consen    2 SFTCPYCGKGFS-ESSLVEHCEDEHRS   27 (54)
T ss_pred             CcCCCCCCCccC-HHHHHHHHHhHCcC
Confidence            588999999655 5689999776 444

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.90  E-value=0.14  Score=34.02  Aligned_cols=28  Identities=29%  Similarity=0.452  Sum_probs=18.8

Q ss_pred             ccccccccCcccccCCCh----hhhhhHH-Hhh
Q 044606           36 FVMEKHKCRLCFKNFSNG----RALGGHM-RSH   63 (413)
Q Consensus        36 ~~~~~~~C~iC~K~F~~~----~~L~~Hm-R~H   63 (413)
                      .....-+|.+|++.|...    +.|..|+ +.|
T Consensus        12 ~~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   12 GDKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             GCSS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             CCcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            556778899999999885    8899999 444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=88.72  E-value=0.15  Score=56.64  Aligned_cols=78  Identities=19%  Similarity=0.178  Sum_probs=48.1

Q ss_pred             CCCccccCCccccccChhhhhhhhhh-cCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhc
Q 044606          273 SRGKYKCETCKKVFKSYQALGGHRAS-HKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALG  351 (413)
Q Consensus       273 ~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~  351 (413)
                      -.+.|+|+.|+-.|.....|..|+|+ |..-+.   .+|....   ....+-+....-.+-++|.|..|...|+.+.+|.
T Consensus       462 ~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~---~~c~~gq---~~~~~arg~~~~~~~~p~~C~~C~~stttng~Ls  535 (1406)
T KOG1146|consen  462 FFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS---AYCKAGQ---NHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLS  535 (1406)
T ss_pred             ccccccCCccchhhhhHHHhhhcccccccccch---hHhHhcc---ccccccccccccCCCCcccceeeeeeeecchHHH
Confidence            34678888888888888888888876 333222   1111110   0000001111123457999999999999999999


Q ss_pred             ccccc
Q 044606          352 GHKRT  356 (413)
Q Consensus       352 ~H~r~  356 (413)
                      .|+..
T Consensus       536 ihlqS  540 (1406)
T KOG1146|consen  536 IHLQS  540 (1406)
T ss_pred             HHHHH
Confidence            99873

>smart00614 ZnF_BED BED zinc finger

Probab=88.03  E-value=0.26  Score=33.73  Aligned_cols=26  Identities=35%  Similarity=0.704  Sum_probs=21.7

Q ss_pred             cccccCcccccCCCh-----hhhhhHHH-hhc
Q 044606           39 EKHKCRLCFKNFSNG-----RALGGHMR-SHM   64 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~-----~~L~~HmR-~Ht   64 (413)
                      ..=.|.+|++.++..     +.|.+||+ +|.
T Consensus        17 ~~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~   48 (50)
T smart00614       17 QRAKCKYCGKKLSRSSKGGTSNLRRHLRRKHP   48 (50)
T ss_pred             eEEEecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence            456799999999877     69999999 674

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>smart00451 ZnF_U1 U1-like zinc finger

Probab=87.79  E-value=0.32  Score=30.23  Aligned_cols=24  Identities=21%  Similarity=0.555  Sum_probs=20.8

Q ss_pred             CccccCCccccccChhhhhhhhhh
Q 044606          275 GKYKCETCKKVFKSYQALGGHRAS  298 (413)
Q Consensus       275 ~~~~C~~C~k~F~~~~~L~~H~~~  298 (413)
                      .+|.|.+|++.|.....+..|++.
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHCh
Confidence            358899999999999999999764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.47  E-value=0.58  Score=49.22  Aligned_cols=98  Identities=12%  Similarity=0.071  Sum_probs=49.2

Q ss_pred             cccCcCcchHHHHHhhhhcCCCCccccCCcc------ccccChhhhhhhhhhcCCCcccCCC--CCCc-ccc-c-ccchh
Q 044606          253 KSMDETDESEEFKSFNNKNRSRGKYKCETCK------KVFKSYQALGGHRASHKKIKFYTPV--QETE-LDQ-E-NAGAS  321 (413)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~------k~F~~~~~L~~H~~~H~~~kp~~C~--~C~~-~f~-~-~~~~~  321 (413)
                      -+...+.+..++..|.+.+.    |.|..|.      --|.....|..|-+.+.    |.|.  .|.. .|. + .....
T Consensus       187 ~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~~~f~~~~~~ei~  258 (669)
T KOG2231|consen  187 FCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRTKKFYVAFELEIE  258 (669)
T ss_pred             hhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC----ccccccccccceeeehhHHHHH
Confidence            33445556666666654433    7777774      44566667777766543    5665  4542 221 1 11223


Q ss_pred             hhhhcCCCCCCCccccC--CcCc----ccCCchhhcccccccc
Q 044606          322 INLASPPLSVKKVHECP--VCFR----VFSSGQALGGHKRTHV  358 (413)
Q Consensus       322 l~~h~~~h~g~kp~~C~--~C~k----~F~~~~~L~~H~r~H~  358 (413)
                      |+.|.+.+.-++-|.|.  .=|+    .|.....+..|.++-.
T Consensus       259 lk~~~~~~~~e~~~~~~~~r~Gr~s~~~r~~~~~~~~~~~~~~  301 (669)
T KOG2231|consen  259 LKAHNRFIQHEKCYICRPSRPGRPSSRYRGPYRRLESHFRVSD  301 (669)
T ss_pred             HHhhccccchheeccCCcccCCCCcccccCCcccccccccccc
Confidence            44444444446666664  2222    3333334455555443

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=86.13  E-value=0.22  Score=45.06  Aligned_cols=46  Identities=28%  Similarity=0.474  Sum_probs=38.5

Q ss_pred             eeeeeeEEeeccccccc---cccccccCcccccCCChhhhhhH-HHhhcC
Q 044606           20 LFIIYVYVFFKKRKSLF---VMEKHKCRLCFKNFSNGRALGGH-MRSHML   65 (413)
Q Consensus        20 ~~~~~~~~~~~~~~~~~---~~~~~~C~iC~K~F~~~~~L~~H-mR~Htg   65 (413)
                      -.|.|+++-|..-+..+   ..+-|+|.||.|+.-..--|.+| |.+|..
T Consensus        11 pwcwycnrefddekiliqhqkakhfkchichkkl~sgpglsihcmqvhke   60 (341)
T KOG2893|consen   11 PWCWYCNREFDDEKILIQHQKAKHFKCHICHKKLFSGPGLSIHCMQVHKE   60 (341)
T ss_pred             ceeeecccccchhhhhhhhhhhccceeeeehhhhccCCCceeehhhhhhh
Confidence            67999999998888777   34558999999999999999999 677754

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=85.25  E-value=0.58  Score=27.33  Aligned_cols=20  Identities=25%  Similarity=0.796  Sum_probs=16.7

Q ss_pred             ccCcccccCCChhhhhhHHHh
Q 044606           42 KCRLCFKNFSNGRALGGHMRS   62 (413)
Q Consensus        42 ~C~iC~K~F~~~~~L~~HmR~   62 (413)
                      .||||++.+ ....+..|+..
T Consensus         3 ~CPiC~~~v-~~~~in~HLD~   22 (26)
T smart00734        3 QCPVCFREV-PENLINSHLDS   22 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHHHH
Confidence            699999999 66788888763

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=83.20  E-value=0.79  Score=36.93  Aligned_cols=30  Identities=20%  Similarity=0.106  Sum_probs=22.2

Q ss_pred             cCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCc
Q 044606          305 YTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSG  347 (413)
Q Consensus       305 ~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~  347 (413)
                      ..|..||+.|...+             ..|-.|+.||..|.-.
T Consensus        10 R~Cp~CG~kFYDLn-------------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLN-------------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCC-------------CCCccCCCCCCccCcc
Confidence            46788887775332             4588899999988777

The function of members of this family is unknown.

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=80.58  E-value=0.67  Score=38.71  Aligned_cols=25  Identities=36%  Similarity=0.542  Sum_probs=16.4

Q ss_pred             cccCcccccCCChhhhhhHHHhhcCCCC
Q 044606           41 HKCRLCFKNFSNGRALGGHMRSHMLNLP   68 (413)
Q Consensus        41 ~~C~iC~K~F~~~~~L~~HmR~Htg~~p   68 (413)
                      -.|-+|||.|..   |++|+++|.|..|
T Consensus        73 i~clecGk~~k~---LkrHL~~~~gltp   97 (132)
T PF05443_consen   73 IICLECGKKFKT---LKRHLRTHHGLTP   97 (132)
T ss_dssp             EE-TBT--EESB---HHHHHHHTT-S-H
T ss_pred             eEEccCCcccch---HHHHHHHccCCCH
Confidence            449999999975   6999999999554

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	413
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	4e-07
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	2e-06
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	1e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 38/286 (13%), Positives = 80/286 (27%), Gaps = 84/286 (29%)

Query: 87  QQLSFEIETESASSPSSSTS-PSEEDDEEKSLFYGLRENP-KRSIRLV-----DPE---- 135
           Q+L ++I+    S    S++        +  L   L+  P +  + LV     + +    
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNA 261

Query: 136 FSFG---VV---DASAAAAAAASAS--VVLQDR-----ESETES--SKNPTRRRSKRTRK 180
           F+     ++           +A+ +  + L          E +S   K    R     R+
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 181 LEQQHRQELDII--------------KKLKLNKSKNTIESSLWGHEPEPVSSISDTTTEE 226
           +   + + L II              K +  +K    IESSL            +     
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL------------NVLEPA 369

Query: 227 DQQQHHHDLIMFRQQDD------------DEYEDEEAEKSMDETDESEEFKSFNNKNRSR 274
           + ++    L +F                  +    +    +++  +     S   K    
Sbjct: 370 EYRKMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHK----YSLVEKQPKE 423

Query: 275 GKYK-----CETCKKVFKSYQALGGHRASHKK-IKFYTPVQETELD 314
                     E   K+   Y         H+  +  Y   +  + D
Sbjct: 424 STISIPSIYLELKVKLENEYAL-------HRSIVDHYNIPKTFDSD 462

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 276 KYKCETCKKVFKSYQALGGHRASHKK 301
            Y C  CK+ F+S QALGGH   H++
Sbjct: 6   SYTCSFCKREFRSAQALGGHMNVHRR 31

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 333 KVHECPVCFRVFSSGQALGGHKRTH 357
           + + C  C R F S QALGGH   H
Sbjct: 5   RSYTCSFCKREFRSAQALGGHMNVH 29

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 40 KHKCRLCFKNFSNGRALGGHMRSH 63
           + C  C + F + +ALGGHM  H
Sbjct: 6  SYTCSFCKREFRSAQALGGHMNVH 29

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 37.8 bits (87), Expect = 9e-04
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 276 KYKCETCKKVFKSYQALGGHRAS--HKKIKFYTPVQETE-LDQENAGASINLASPPLSVK 332
           K++C+ C   + +   L  H     H +   +           +    S+         +
Sbjct: 19  KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78

Query: 333 KVHECPVCFRVFSSGQALGGH--KRTH 357
           KV +C  C   F S Q L  H  K  H
Sbjct: 79  KVLKCMYCGHSFESLQDLSVHMIKTKH 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	413
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.91
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.88
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.88
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.87
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.85
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.82
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.81
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.81
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.8
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.79
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.78
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.76
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.76
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.74
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.7
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.7
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.69
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.69
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.68
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.63
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.62
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.62
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.6
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.6
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.58
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.58
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.53
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.53
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.52
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.51
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.51
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.51
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.5
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.5
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.49
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.46
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.45
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.45
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.45
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.44
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.44
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.43
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.42
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.39
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.39
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.38
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.38
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.36
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.35
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.34
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.34
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.34
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.33
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.33
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.31
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.31
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.3
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.3
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.29
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.29
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.26
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.23
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.21
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.17
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.16
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.15
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.13
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.11
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.1
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.1
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.09
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.09
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.09
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.08
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.08
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.08
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.08
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.07
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.07
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.07
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.06
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.06
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.05
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.04
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.04
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.03
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.03
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.03
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.02
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.98
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.98
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.97
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.97
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.96
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.96
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.95
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.95
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.95
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.94
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.93
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.93
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.93
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.93
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.93
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.92
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.92
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.92
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.92
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.92
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.92
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.91
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.91
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	98.91
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.91
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.9
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.9
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.9
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.9
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.9
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.9
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.89
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.89
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.89
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.89
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.88
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.88
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.88
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.88
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.88
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.88
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.87
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.87
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.87
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.87
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.86
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.86
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.86
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.86
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.85
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.85
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.85
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.84
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.84
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.84
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.84
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.84
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.83
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.83
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.83
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.83
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.83
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.83
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.82
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.82
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.82
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.82
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.82
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.81
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.81
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.8
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.8
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.79
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.79
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.78
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.76
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.73
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.72
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.71
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.71
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.7
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.69
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.68
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.67
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.67
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.67
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.65
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.64
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.64
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.64
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.63
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.63
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.62
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.62
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.04
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.6
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.59
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.59
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.58
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.58
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.58
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.0
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.58
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.56
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.53
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.52
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.51
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.5
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.86
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.47
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.46
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.46
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.41
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.41
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.41
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.4
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.38
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.38
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.33
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.32
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.31
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.3
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.29
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.27
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.25
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.22
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.21
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.48
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.48
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.18
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.17
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.46
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.14
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.14
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.11
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.1
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.07
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.05
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.01
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.0
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.0
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.85
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.79
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.66
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.07
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.02
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	95.55
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	93.98
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.77
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	92.91
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	88.89
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	84.98
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	84.23
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	83.01
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	82.7
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	81.7
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.03

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.91  E-value=2.6e-25  Score=198.39  Aligned_cols=109  Identities=20%  Similarity=0.322  Sum_probs=96.8

Q ss_pred             hhcccCcCcchHHHHHhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCC
Q 044606          251 AEKSMDETDESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLS  330 (413)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~  330 (413)
                      |..+...+.....+..|++.|.++++|.|.+|++.|.+...|..|+++|+++++|.|..|++.|.  ....|..|+++|+
T Consensus        80 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~--~~~~L~~H~~~H~  157 (190)
T 2i13_A           80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFS--REDNLHTHQRTHT  157 (190)
T ss_dssp             CTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEES--CHHHHHHHHHHHH
T ss_pred             CcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccC--CHHHHHHHHHhcC
Confidence            33444566677889999999999999999999999999999999999999999999999999994  6778999999999


Q ss_pred             CCCccccCCcCcccCCchhhcccccccccCC
Q 044606          331 VKKVHECPVCFRVFSSGQALGGHKRTHVTGL  361 (413)
Q Consensus       331 g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~  361 (413)
                      ++++|.|++|++.|.+...|..|+++|+++.
T Consensus       158 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~k  188 (190)
T 2i13_A          158 GEKPYKCPECGKSFSRRDALNVHQRTHTGKK  188 (190)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHTTC----
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999998763

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.88  E-value=2.6e-24  Score=191.94  Aligned_cols=98  Identities=23%  Similarity=0.355  Sum_probs=90.6

Q ss_pred             HHHHHhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcC
Q 044606          262 EEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCF  341 (413)
Q Consensus       262 ~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~  341 (413)
                      ..+..|+..|.++++|.|.+|++.|.+...|..|+++|.++++|.|..|++.|.  ....|..|+++|+++++|.|++|+
T Consensus        63 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~--~~~~l~~H~~~h~~~~~~~C~~C~  140 (190)
T 2i13_A           63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFS--QLAHLRAHQRTHTGEKPYKCPECG  140 (190)
T ss_dssp             HHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEES--SHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             HHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccC--CHHHHHHHHHHhCCCCCeECCCCC
Confidence            356678888889999999999999999999999999999999999999999994  677899999999999999999999


Q ss_pred             cccCCchhhcccccccccCC
Q 044606          342 RVFSSGQALGGHKRTHVTGL  361 (413)
Q Consensus       342 k~F~~~~~L~~H~r~H~~~~  361 (413)
                      +.|.+...|..|+++|+++.
T Consensus       141 ~~f~~~~~L~~H~~~H~~~~  160 (190)
T 2i13_A          141 KSFSREDNLHTHQRTHTGEK  160 (190)
T ss_dssp             CEESCHHHHHHHHHHHHCCC
T ss_pred             cccCCHHHHHHHHHhcCCCC
Confidence            99999999999999998753

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=5.8e-23  Score=176.72  Aligned_cols=98  Identities=17%  Similarity=0.216  Sum_probs=89.8

Q ss_pred             chHHHHHhhhhcCCCCccccCC--ccccccChhhhhhhhhhcCCCcccCCCC--CCcccccccchhhhhhc-CCCCCCCc
Q 044606          260 ESEEFKSFNNKNRSRGKYKCET--CKKVFKSYQALGGHRASHKKIKFYTPVQ--ETELDQENAGASINLAS-PPLSVKKV  334 (413)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~kp~~C~~--C~~~f~~~~~~~l~~h~-~~h~g~kp  334 (413)
                      ....+..|++.|.++++|.|.+  |++.|.+...|..|+++|+++++|.|..  |++.|.  ....|..|+ ++|+++++
T Consensus        51 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~--~~~~L~~H~~~~H~~~~~  128 (155)
T 2gli_A           51 AQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFS--NASDRAKHQNRTHSNEKP  128 (155)
T ss_dssp             SHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEES--SSSTTHHHHHHTTCSCCC
T ss_pred             hHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccC--CHHHHHHHHHHhcCCCCC
Confidence            3456778888999999999986  9999999999999999999999999998  999994  667889998 89999999


Q ss_pred             cccCC--cCcccCCchhhccccccccc
Q 044606          335 HECPV--CFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       335 ~~C~~--C~k~F~~~~~L~~H~r~H~~  359 (413)
                      |.|++  |++.|.+...|..|+++|+|
T Consensus       129 ~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          129 YVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             EECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             eeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            99998  99999999999999999985

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.87  E-value=1.2e-22  Score=181.15  Aligned_cols=102  Identities=17%  Similarity=0.083  Sum_probs=89.3

Q ss_pred             ccCcCcchHHHHHhh-hhc-CCCCcccc--CCccccccChhhhhhhhhhcCCCcccCCCC--CCcccccccchhhhhhcC
Q 044606          254 SMDETDESEEFKSFN-NKN-RSRGKYKC--ETCKKVFKSYQALGGHRASHKKIKFYTPVQ--ETELDQENAGASINLASP  327 (413)
Q Consensus       254 ~~~~~~~~~~~~~~~-~~~-~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~--C~~~f~~~~~~~l~~h~~  327 (413)
                      +...+.....+..|+ ..| .+.++|.|  .+|++.|.+...|..|+++|++++||.|..  |++.|  .....|..|++
T Consensus        80 C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F--~~~~~L~~H~~  157 (190)
T 1tf6_A           80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF--SLPSRLKRHEK  157 (190)
T ss_dssp             CCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBC--SSHHHHHHHHT
T ss_pred             CCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchh--cCHHHHHHHHH
Confidence            445566778889998 677 57889999  889999999999999999999999999988  99998  46778999999


Q ss_pred             CCCCCCccccCC---cCcccCCchhhcccccccccC
Q 044606          328 PLSVKKVHECPV---CFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       328 ~h~g~kp~~C~~---C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      +|+|   |.|.+   |++.|.+...|..|+++|+++
T Consensus       158 ~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          158 VHAG---YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             SSCS---CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             HhCC---CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence            9998   99999   999999999999999999864

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.85  E-value=5.4e-22  Score=176.80  Aligned_cols=96  Identities=18%  Similarity=0.288  Sum_probs=88.5

Q ss_pred             HHHHHhhhhcCCCCccccC--CccccccChhhhhhhh-hhc-CCCcccCC--CCCCcccccccchhhhhhcCCCCCCCcc
Q 044606          262 EEFKSFNNKNRSRGKYKCE--TCKKVFKSYQALGGHR-ASH-KKIKFYTP--VQETELDQENAGASINLASPPLSVKKVH  335 (413)
Q Consensus       262 ~~~~~~~~~~~~~~~~~C~--~C~k~F~~~~~L~~H~-~~H-~~~kp~~C--~~C~~~f~~~~~~~l~~h~~~h~g~kp~  335 (413)
                      ..+..|++.|.++++|.|.  .|++.|.+...|..|+ +.| .++++|.|  ..|++.|.  ....|..|+++|++++||
T Consensus        58 ~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~--~~~~L~~H~~~H~~~~~~  135 (190)
T 1tf6_A           58 HHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFK--KHNQLKVHQFSHTQQLPY  135 (190)
T ss_dssp             HHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECS--SHHHHHHHHGGGSSSCSS
T ss_pred             HHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccC--CHHHHHHHHHHhCCCCCc
Confidence            4567788889999999999  8999999999999999 778 57899999  88999994  677899999999999999


Q ss_pred             ccCC--cCcccCCchhhccccccccc
Q 044606          336 ECPV--CFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       336 ~C~~--C~k~F~~~~~L~~H~r~H~~  359 (413)
                      .|++  |++.|.+...|..|+++|++
T Consensus       136 ~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          136 ECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             BCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             cCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            9988  99999999999999999998

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=5.5e-21  Score=157.74  Aligned_cols=83  Identities=18%  Similarity=0.275  Sum_probs=65.5

Q ss_pred             ccccCCccccccChhhhhhhhhh---cCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhcc
Q 044606          276 KYKCETCKKVFKSYQALGGHRAS---HKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGG  352 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~---H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~  352 (413)
                      +|.|.+|++.|.+...|..|++.   |.++++|.|..|++.|.  ....|..|+++|.+++||.|++|++.|.+...|..
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~--~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  112 (124)
T 2dlq_A           35 PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFR--RRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQS  112 (124)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEES--SHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHH
T ss_pred             CeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccC--CHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHH
Confidence            36677778888888888888774   56777788888877773  55667777777778899999999999999999999


Q ss_pred             cccc-cccC
Q 044606          353 HKRT-HVTG  360 (413)
Q Consensus       353 H~r~-H~~~  360 (413)
                      |++. |.++
T Consensus       113 H~~~~H~~~  121 (124)
T 2dlq_A          113 HMIKLHSGP  121 (124)
T ss_dssp             HHHHTSSCS
T ss_pred             HHHHHCCCC
Confidence            9985 5543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.81  E-value=3e-20  Score=159.85  Aligned_cols=84  Identities=18%  Similarity=0.203  Sum_probs=78.4

Q ss_pred             ccccCCccccccChhhhhhhhhhcCCCcccCCCC--CCcccccccchhhhhhcCCCCCCCccccCC--cCcccCCchhhc
Q 044606          276 KYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ--ETELDQENAGASINLASPPLSVKKVHECPV--CFRVFSSGQALG  351 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~--C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~--C~k~F~~~~~L~  351 (413)
                      .|.|.+|++.|.....|..|+++|+++++|.|..  |++.|  .....|..|+++|+++++|.|.+  |++.|.+...|.
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f--~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~  139 (155)
T 2rpc_A           62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIF--ARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRK  139 (155)
T ss_dssp             BTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEE--SCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHH
T ss_pred             ccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCcc--CCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHH
Confidence            4899999999999999999999999999999998  99998  46778999999999999999997  999999999999


Q ss_pred             ccccccccCC
Q 044606          352 GHKRTHVTGL  361 (413)
Q Consensus       352 ~H~r~H~~~~  361 (413)
                      .|+++|+++.
T Consensus       140 ~H~~~H~~~k  149 (155)
T 2rpc_A          140 KHMHVHTSDK  149 (155)
T ss_dssp             HSSTTTTSCC
T ss_pred             HHHHHhcCCC
Confidence            9999999764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.81  E-value=5.9e-21  Score=156.51  Aligned_cols=80  Identities=20%  Similarity=0.414  Sum_probs=70.3

Q ss_pred             ccccC--CccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCcccc--CCcCcccCCchhhc
Q 044606          276 KYKCE--TCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHEC--PVCFRVFSSGQALG  351 (413)
Q Consensus       276 ~~~C~--~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C--~~C~k~F~~~~~L~  351 (413)
                      +|.|.  .|++.|.....|..|+++|.++++|.|..|++.|.  ....|..|+++|+++++|.|  ++|++.|.+...|.
T Consensus        36 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~--~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~  113 (119)
T 2jp9_A           36 PYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFS--RSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV  113 (119)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEES--CHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHH
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhC--CHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHH
Confidence            36676  68899999999999999998889999999988884  66778888888888999999  89999999999999


Q ss_pred             cccccc
Q 044606          352 GHKRTH  357 (413)
Q Consensus       352 ~H~r~H  357 (413)
                      .|+++|
T Consensus       114 ~H~~~H  119 (119)
T 2jp9_A          114 RHHNMH  119 (119)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            999987

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.80  E-value=2.2e-21  Score=163.10  Aligned_cols=93  Identities=16%  Similarity=0.157  Sum_probs=87.2

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSS  346 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~  346 (413)
                      +..+|.|+++|.|.+|+++|.....|..|+++|++++||.|..|++.|.  ....|..|+++|+|++||.|++|++.|.+
T Consensus        13 ~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~~C~k~F~~   90 (133)
T 2lt7_A           13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFP--LAEYRTKHEIHHTGERRYQCLACGKSFIN   90 (133)
T ss_dssp             EEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEES--SHHHHHHHHHHHHTCCCEEESSSCCEESS
T ss_pred             ceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecc--cccchhhhccccCCCccccCCCCCCCcCC
Confidence            4566889999999999999999999999999999999999999999994  67789999999999999999999999999


Q ss_pred             chhhcccccccccCC
Q 044606          347 GQALGGHKRTHVTGL  361 (413)
Q Consensus       347 ~~~L~~H~r~H~~~~  361 (413)
                      ...|..|+++|+++.
T Consensus        91 ~~~L~~H~~~hh~~~  105 (133)
T 2lt7_A           91 YQFMSSHIKSVHSQD  105 (133)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHhHHhcCCC
Confidence            999999999998764

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.79  E-value=1.8e-20  Score=154.93  Aligned_cols=85  Identities=19%  Similarity=0.217  Sum_probs=74.6

Q ss_pred             CccccCCccccccChhhhhhhhhhcCCCcccCCCC--CCcccccccchhhhhhcCCCCCCCccccC--CcCcccCCchhh
Q 044606          275 GKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ--ETELDQENAGASINLASPPLSVKKVHECP--VCFRVFSSGQAL  350 (413)
Q Consensus       275 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~--C~~~f~~~~~~~l~~h~~~h~g~kp~~C~--~C~k~F~~~~~L  350 (413)
                      ++|.|.+|++.|.+...|..|+++|.++++|.|..  |++.|  .....|..|+++|.++++|.|+  .|++.|.+...|
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f--~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L  110 (124)
T 1ubd_C           33 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRF--SLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNL  110 (124)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEE--SCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTT
T ss_pred             CCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCcc--CCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHH
Confidence            35889999999999999999999999999999976  99988  4677888999999999999996  599999999999


Q ss_pred             cccccccccCC
Q 044606          351 GGHKRTHVTGL  361 (413)
Q Consensus       351 ~~H~r~H~~~~  361 (413)
                      ..|+++|+++.
T Consensus       111 ~~H~~~H~~~k  121 (124)
T 1ubd_C          111 KSHILTHAKAK  121 (124)
T ss_dssp             HHHHHHHC---
T ss_pred             HHHHHHHcccc
Confidence            99999998753

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.78  E-value=2.7e-20  Score=156.47  Aligned_cols=35  Identities=17%  Similarity=0.200  Sum_probs=31.6

Q ss_pred             ccccccccCcccccCCChhhhhhHHHhhcCCCCCC
Q 044606           36 FVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIP   70 (413)
Q Consensus        36 ~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~   70 (413)
                      .+.++|+|++|+|.|.+.+.|.+|||+|+|++||.
T Consensus        18 ~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   52 (133)
T 2lt7_A           18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYP   52 (133)
T ss_dssp             TTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEE
T ss_pred             CCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCee
Confidence            35678999999999999999999999999977773

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=3.1e-19  Score=145.64  Aligned_cols=100  Identities=17%  Similarity=0.166  Sum_probs=91.2

Q ss_pred             HHHHHhhhhcCCCCccccCCccccccChhhhhhhhhh--cCCCcccC-CCCCCcccccccchhhhhhcCCCCCCCccccC
Q 044606          262 EEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRAS--HKKIKFYT-PVQETELDQENAGASINLASPPLSVKKVHECP  338 (413)
Q Consensus       262 ~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~kp~~-C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~  338 (413)
                      ..++.|++.|.++++|.|.+|++.|.....|..|+++  |.+.+++. |..|++.|.+.....|..|+++|++++||.|.
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~   84 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCM   84 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCS
T ss_pred             hhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECC
Confidence            3466788999999999999999999999999999999  88888765 99999999767788899999999999999999


Q ss_pred             CcCcccCCchhhcccccccccCC
Q 044606          339 VCFRVFSSGQALGGHKRTHVTGL  361 (413)
Q Consensus       339 ~C~k~F~~~~~L~~H~r~H~~~~  361 (413)
                      +|++.|.+...|..|+++|+...
T Consensus        85 ~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           85 YCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             SSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             CCCCccCCHHHHHHHHHHhCCcc
Confidence            99999999999999999987654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=3.6e-19  Score=140.23  Aligned_cols=92  Identities=25%  Similarity=0.307  Sum_probs=85.5

Q ss_pred             cCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhh
Q 044606          271 NRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQAL  350 (413)
Q Consensus       271 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L  350 (413)
                      +.++++|.|.+|++.|.....|..|+++|.++++|.|..|++.|.  ....|..|+++|.++++|.|.+|++.|.+...|
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~--~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   80 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAA--DSSSLNKHLRIHSDERPFKCQICPYASRNSSQL   80 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEES--SHHHHHHHHHHSCCCCCEECSSSSCEESSHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccC--CHHHHHHHHHHhCCCCCccCCCCCCccCCHHHH
Confidence            467899999999999999999999999999999999999999994  677899999999999999999999999999999


Q ss_pred             cccccccccCCCCC
Q 044606          351 GGHKRTHVTGLVAS  364 (413)
Q Consensus       351 ~~H~r~H~~~~~~~  364 (413)
                      ..|+++|+++..+.
T Consensus        81 ~~H~~~h~~~~~p~   94 (96)
T 2dmd_A           81 TVHLRSHTGDSGPS   94 (96)
T ss_dssp             HHHHTTCCSCCCCC
T ss_pred             HHHHHHhcCCCCCC
Confidence            99999999876543

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.74  E-value=1.5e-18  Score=139.35  Aligned_cols=91  Identities=19%  Similarity=0.248  Sum_probs=84.3

Q ss_pred             cCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhh
Q 044606          271 NRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQAL  350 (413)
Q Consensus       271 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L  350 (413)
                      ...+++|.|.+|++.|.....|..|+++|.++++|.|..|++.|.  ....|..|+++|.++++|.|.+|++.|.+...|
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~--~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L   89 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFR--RQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTL   89 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCS--CHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhC--CHHHHHHHHHHhCCCCCeECCCcCCcccCHHHH
Confidence            346788999999999999999999999999999999999999994  677899999999999999999999999999999


Q ss_pred             cccccccccCCCC
Q 044606          351 GGHKRTHVTGLVA  363 (413)
Q Consensus       351 ~~H~r~H~~~~~~  363 (413)
                      ..|+++|+++...
T Consensus        90 ~~H~~~H~~~~~~  102 (106)
T 2ee8_A           90 AVHKTLHMQTSSP  102 (106)
T ss_dssp             HHHHHHTTSCCCC
T ss_pred             HHHHHHhCCCCCC
Confidence            9999999987543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.8e-18  Score=139.82  Aligned_cols=90  Identities=16%  Similarity=0.162  Sum_probs=84.1

Q ss_pred             hcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchh
Q 044606          270 KNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQA  349 (413)
Q Consensus       270 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~  349 (413)
                      .|+++++|.| .|++.|.....|..|+++|.++++|.|..|++.|.  ....|..|+++|.++++|.|.+|++.|.+...
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~--~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   80 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK--MKHHLVGHMKIHTGIKPYECNICAKRFMWRDS   80 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEES--SSHHHHHHHTTTCCCCCEECSSSCCEESCHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccC--CHHHHHHHHHHcCCCCCeeCCCCcchhcCHHH
Confidence            4788999999 99999999999999999999999999999999994  67789999999999999999999999999999


Q ss_pred             hcccccccccCCC
Q 044606          350 LGGHKRTHVTGLV  362 (413)
Q Consensus       350 L~~H~r~H~~~~~  362 (413)
                      |..|+++|+....
T Consensus        81 l~~H~~~~~~~~~   93 (110)
T 2csh_A           81 FHRHVTSCTKSYE   93 (110)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHcccccc
Confidence            9999999986543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.70  E-value=1.8e-18  Score=134.42  Aligned_cols=86  Identities=17%  Similarity=0.266  Sum_probs=79.0

Q ss_pred             CCCccccC--CccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhh
Q 044606          273 SRGKYKCE--TCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQAL  350 (413)
Q Consensus       273 ~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L  350 (413)
                      ++++|.|.  .|++.|.....|..|+++|.++++|.|..|++.|.  ....|..|+++|.++++|.|.+|++.|.+...|
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~--~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   78 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFS--RSDHLTTHIRTHTGEKPFACDICGRKFARSDER   78 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEES--CHHHHHHHHHHHHCCCCEECTTTCCEESSHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccC--CHHHHHHHHHHcCCCCCccCCCCCchhCCHHHH
Confidence            36799998  59999999999999999999999999999999994  677889999999999999999999999999999


Q ss_pred             cccccccccC
Q 044606          351 GGHKRTHVTG  360 (413)
Q Consensus       351 ~~H~r~H~~~  360 (413)
                      ..|+++|+++
T Consensus        79 ~~H~~~H~~~   88 (90)
T 1a1h_A           79 KRHTKIHLRQ   88 (90)
T ss_dssp             HHHHGGGGC-
T ss_pred             HHHHHHhccc
Confidence            9999999875

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.70  E-value=1.4e-18  Score=132.46  Aligned_cols=82  Identities=24%  Similarity=0.372  Sum_probs=77.4

Q ss_pred             ccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhccccc
Q 044606          276 KYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKR  355 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r  355 (413)
                      ||.|.+|++.|.....|..|+++|.++++|.|..|++.|.  ....|..|+++|.++++|.|.+|++.|.+...|..|++
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~--~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   78 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFH--QKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR   78 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEES--SHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhC--CHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHH
Confidence            5899999999999999999999999999999999999994  67789999999999999999999999999999999999


Q ss_pred             cccc
Q 044606          356 THVT  359 (413)
Q Consensus       356 ~H~~  359 (413)
                      +|+|
T Consensus        79 ~H~g   82 (82)
T 2kmk_A           79 KHTG   82 (82)
T ss_dssp             HHC-
T ss_pred             hhCC
Confidence            9975

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=6.7e-18  Score=132.59  Aligned_cols=88  Identities=23%  Similarity=0.279  Sum_probs=80.9

Q ss_pred             CCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCC--CccccCCcCcccCCchh
Q 044606          272 RSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVK--KVHECPVCFRVFSSGQA  349 (413)
Q Consensus       272 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~--kp~~C~~C~k~F~~~~~  349 (413)
                      +++++|.|.+|++.|.....|..|+++|.++++|.|..|++.|.  ....|..|++.|.++  ++|.|.+|++.|.+...
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~--~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~   80 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFK--RKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDH   80 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEES--CHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccC--CHHHHHHHHHHhcCCCCCceECCCccchhCCHHH
Confidence            57889999999999999999999999999999999999999994  677889999999887  99999999999999999


Q ss_pred             hccccc-ccccCC
Q 044606          350 LGGHKR-THVTGL  361 (413)
Q Consensus       350 L~~H~r-~H~~~~  361 (413)
                      |..|++ +|.+..
T Consensus        81 L~~H~~~~H~~~~   93 (95)
T 2yt9_A           81 LNGHIKQVHSGPS   93 (95)
T ss_dssp             HHHHHHHTSCCCS
T ss_pred             HHHHHHHhcCCCC
Confidence            999986 787644

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.69  E-value=7e-18  Score=121.00  Aligned_cols=59  Identities=24%  Similarity=0.523  Sum_probs=52.6

Q ss_pred             CCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhcc
Q 044606          273 SRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGG  352 (413)
Q Consensus       273 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~  352 (413)
                      ++|||.|.+||++|.....|..|+++|+|                              ++||.|.+||+.|.+.+.|..
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~------------------------------ekp~~C~~C~k~F~~~~~L~~   50 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLG------------------------------YRPRSCPECGKCFRDQSEVNR   50 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHT------------------------------CCCEECTTTCCEESSHHHHHH
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCC------------------------------CcCeECCCCCCCcCCHHHHHH
Confidence            37899999999999999999999999987                              668888899999999999999


Q ss_pred             cccccccCC
Q 044606          353 HKRTHVTGL  361 (413)
Q Consensus       353 H~r~H~~~~  361 (413)
                      |+++|+++.
T Consensus        51 H~~~Htgep   59 (60)
T 4gzn_C           51 HLKVHQNKP   59 (60)
T ss_dssp             HGGGGSCC-
T ss_pred             HhCccCCCC
Confidence            999999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=6.5e-18  Score=135.99  Aligned_cols=92  Identities=16%  Similarity=0.135  Sum_probs=82.4

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSS  346 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~  346 (413)
                      +++.|.++++|.|.+|++.|.....|..|+++|  .++|.|..|++.|.  ....|..|++ |+++++|.|.+|++.|.+
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~--~~~~l~~H~~-H~~~~~~~C~~C~~~f~~   81 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFF--SPELKQEHES-KCEYKKLTCLECMRTFKS   81 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBS--SHHHHHHHHH-HCSTGGGEEGGGTEECSS
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccC--CHHHHHHHHH-cCCCCCccCccccchhCC
Confidence            456688999999999999999999999999999  57999999999995  5667888885 999999999999999999


Q ss_pred             chhhccccc-ccccCCCC
Q 044606          347 GQALGGHKR-THVTGLVA  363 (413)
Q Consensus       347 ~~~L~~H~r-~H~~~~~~  363 (413)
                      ...|..|++ +|.++..-
T Consensus        82 ~~~L~~H~~~~H~~~~~~   99 (107)
T 1wjp_A           82 SFSIWRHQVEVHNQNNMA   99 (107)
T ss_dssp             HHHHHHHHHHTSCCCCCC
T ss_pred             HHHHHHHHHHHcCCCCCC
Confidence            999999997 88766543

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.63  E-value=5.9e-17  Score=128.30  Aligned_cols=86  Identities=23%  Similarity=0.284  Sum_probs=79.4

Q ss_pred             CCCCccccCC--ccccccChhhhhhhhhhcCCCcccCCC--CCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCc
Q 044606          272 RSRGKYKCET--CKKVFKSYQALGGHRASHKKIKFYTPV--QETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSG  347 (413)
Q Consensus       272 ~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~kp~~C~--~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~  347 (413)
                      ...++|.|.+  |++.|.....|..|+++|.++++|.|.  .|++.|  .....|..|+++|+++++|.|.+|++.|.+.
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f--~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   88 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF--ARSDELTRHYRKHTGAKPFQCGVCNRSFSRS   88 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEE--SSHHHHHHHHHHHTSCCSCBCSSSCCBCSSH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCcc--CCHHHHHHHHHHhCCCCCeECCCCcCccCCH
Confidence            3567899997  999999999999999999999999996  699988  4677889999999999999999999999999


Q ss_pred             hhhccccccccc
Q 044606          348 QALGGHKRTHVT  359 (413)
Q Consensus       348 ~~L~~H~r~H~~  359 (413)
                      ..|..|+++|++
T Consensus        89 ~~l~~H~~~H~~  100 (100)
T 2ebt_A           89 DHLALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCC
Confidence            999999999974

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.62  E-value=7.3e-17  Score=124.92  Aligned_cols=83  Identities=19%  Similarity=0.252  Sum_probs=77.6

Q ss_pred             CCccccCC--ccccccChhhhhhhhhhcCCCcccCCC--CCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchh
Q 044606          274 RGKYKCET--CKKVFKSYQALGGHRASHKKIKFYTPV--QETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQA  349 (413)
Q Consensus       274 ~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~kp~~C~--~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~  349 (413)
                      .++|.|.+  |++.|.....|..|+++|.++++|.|.  .|++.|.  ....|..|+++|+++++|.|++|++.|.+...
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~--~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   80 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFA--RSDELTRHYRKHTGHRPFQCQKCDRAFSRSDH   80 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEES--SHHHHHHHHHHHHCCCCEECSSSSCEESSHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccC--CHHHHHHHHHHcCCCCCccCCCCCcccCCHHH
Confidence            56899999  999999999999999999999999997  5999984  66788899999999999999999999999999


Q ss_pred             hcccccccc
Q 044606          350 LGGHKRTHV  358 (413)
Q Consensus       350 L~~H~r~H~  358 (413)
                      |..|+++|.
T Consensus        81 l~~H~~~H~   89 (89)
T 2wbs_A           81 LALHMKRHF   89 (89)
T ss_dssp             HHHHGGGGC
T ss_pred             HHHHHHhhC
Confidence            999999984

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.62  E-value=4.8e-16  Score=124.53  Aligned_cols=34  Identities=24%  Similarity=0.411  Sum_probs=26.7

Q ss_pred             ccccccccCcccccCCChhhhhhHHHhhcCCCCC
Q 044606           36 FVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPI   69 (413)
Q Consensus        36 ~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~   69 (413)
                      ...++|.|++|++.|.+...|..||++|++++||
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   46 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPY   46 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCc
Confidence            3456788888888888888888888888875544

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.60  E-value=3.8e-16  Score=128.48  Aligned_cols=88  Identities=20%  Similarity=0.231  Sum_probs=80.4

Q ss_pred             CCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcC---CCCCCCccccCCcCcccCCch
Q 044606          272 RSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASP---PLSVKKVHECPVCFRVFSSGQ  348 (413)
Q Consensus       272 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~---~h~g~kp~~C~~C~k~F~~~~  348 (413)
                      ++.++|.|.+|++.|.....|..|+++|.++++|.|..|++.|.  ....|..|+.   .|.++++|.|.+|++.|.+..
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~--~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~   80 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYF--RKENLLEHEARNCMNRSEQVFTCSVCQETFRRRM   80 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCS--SHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhc--CHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHH
Confidence            56789999999999999999999999999999999999999994  6667888876   578899999999999999999


Q ss_pred             hhcccccccccCC
Q 044606          349 ALGGHKRTHVTGL  361 (413)
Q Consensus       349 ~L~~H~r~H~~~~  361 (413)
                      .|..|+++|+++.
T Consensus        81 ~l~~H~~~h~~~~   93 (124)
T 2dlq_A           81 ELRLHMVSHTGEM   93 (124)
T ss_dssp             HHHHHHHHHSSSC
T ss_pred             HHHHHHHHcCCCC
Confidence            9999999998753

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.60  E-value=1.1e-16  Score=130.79  Aligned_cols=88  Identities=22%  Similarity=0.288  Sum_probs=81.9

Q ss_pred             CCCCccccCC--ccccccChhhhhhhhhhcCCCcccCCC--CCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCc
Q 044606          272 RSRGKYKCET--CKKVFKSYQALGGHRASHKKIKFYTPV--QETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSG  347 (413)
Q Consensus       272 ~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~kp~~C~--~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~  347 (413)
                      +++++|.|.+  |++.|.....|..|+++|.++++|.|.  .|++.|  .....|..|+++|.++++|.|.+|++.|.+.
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f--~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   79 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRF--SRSDQLKRHQRRHTGVKPFQCKTCQRKFSRS   79 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEE--SSHHHHHHHHHHHHCCCCEECTTTCCEESCH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCcc--CCHHHHHHHHHHcCCCCCccCCccCchhCCH
Confidence            4678999997  999999999999999999999999999  799998  4677899999999999999999999999999


Q ss_pred             hhhcccccccccCC
Q 044606          348 QALGGHKRTHVTGL  361 (413)
Q Consensus       348 ~~L~~H~r~H~~~~  361 (413)
                      ..|..|+++|+++.
T Consensus        80 ~~l~~H~~~h~~~~   93 (119)
T 2jp9_A           80 DHLKTHTRTHTGEK   93 (119)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999999998753

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.58  E-value=2e-15  Score=118.52  Aligned_cols=57  Identities=14%  Similarity=0.183  Sum_probs=40.6

Q ss_pred             ccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCc
Q 044606          276 KYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKV  334 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp  334 (413)
                      +|.|.+|++.|.....|..|+++|.++++|.|..|++.|.  ....|..|+++|+++++
T Consensus        36 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~--~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           36 PYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASR--NSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEES--SHHHHHHHHTTCCSCCC
T ss_pred             CEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccC--CHHHHHHHHHHhcCCCC
Confidence            3667777777777777777777777777777777777773  55567777777776654

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.58  E-value=9.4e-16  Score=131.38  Aligned_cols=109  Identities=19%  Similarity=0.164  Sum_probs=96.8

Q ss_pred             hhcccCcCcchHHHHHhhh---hcCCCCccccCCc-----cccccChhhhhhhhhhcCCCcccCCCC--CCcccccccch
Q 044606          251 AEKSMDETDESEEFKSFNN---KNRSRGKYKCETC-----KKVFKSYQALGGHRASHKKIKFYTPVQ--ETELDQENAGA  320 (413)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~C~~C-----~k~F~~~~~L~~H~~~H~~~kp~~C~~--C~~~f~~~~~~  320 (413)
                      +......+.....+..|++   .|.++++|.|.+|     ++.|.....|..|+++|+++++|.|.+  |++.|  ....
T Consensus         6 C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f--~~~~   83 (155)
T 2gli_A            6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSY--SRLE   83 (155)
T ss_dssp             BTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCC--SSHH
T ss_pred             cCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcc--cCHH
Confidence            4556677888899999998   7889999998753     499999999999999999999999985  99998  4677


Q ss_pred             hhhhhcCCCCCCCccccCC--cCcccCCchhhcccc-cccccCC
Q 044606          321 SINLASPPLSVKKVHECPV--CFRVFSSGQALGGHK-RTHVTGL  361 (413)
Q Consensus       321 ~l~~h~~~h~g~kp~~C~~--C~k~F~~~~~L~~H~-r~H~~~~  361 (413)
                      .|..|+++|+++++|.|++  |++.|.+...|..|+ ++|.++.
T Consensus        84 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  127 (155)
T 2gli_A           84 NLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK  127 (155)
T ss_dssp             HHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCC
T ss_pred             HHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            8999999999999999998  999999999999999 7897653

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.53  E-value=4.3e-15  Score=119.30  Aligned_cols=30  Identities=30%  Similarity=0.357  Sum_probs=24.4

Q ss_pred             cccccccccCcccccCCChhhhhhHHHhhc
Q 044606           35 LFVMEKHKCRLCFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        35 ~~~~~~~~C~iC~K~F~~~~~L~~HmR~Ht   64 (413)
                      ....++|+|++|++.|.+...|..||++|+
T Consensus        11 h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   40 (107)
T 1wjp_A           11 VENKEVYQCRLCNAKLSSLLEQGSHERLCR   40 (107)
T ss_dssp             CCCCCCCBCTTTCCBCSSHHHHHHHHHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHCC
Confidence            345677888888888888888888888884

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.53  E-value=2.2e-15  Score=124.09  Aligned_cols=85  Identities=19%  Similarity=0.262  Sum_probs=77.9

Q ss_pred             CCccccC--CccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCC--cCcccCCchh
Q 044606          274 RGKYKCE--TCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPV--CFRVFSSGQA  349 (413)
Q Consensus       274 ~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~--C~k~F~~~~~  349 (413)
                      +++|.|.  .|++.|.+...|..|+++| +.++|.|..|++.|.  ....|..|+++|.++++|.|.+  |++.|.+...
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~--~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~   79 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFV--ESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN   79 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEES--SHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhC--CHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHH
Confidence            5789999  8999999999999999999 899999999999994  6778999999999999999986  9999999999


Q ss_pred             hcccccccccCC
Q 044606          350 LGGHKRTHVTGL  361 (413)
Q Consensus       350 L~~H~r~H~~~~  361 (413)
                      |..|+++|+++.
T Consensus        80 l~~H~~~h~~~~   91 (124)
T 1ubd_C           80 LRTHVRIHTGDR   91 (124)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHhCCCC
Confidence            999999998754

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.52  E-value=3.8e-15  Score=115.37  Aligned_cols=32  Identities=28%  Similarity=0.476  Sum_probs=25.7

Q ss_pred             ccccccC--cccccCCChhhhhhHHHhhcCCCCC
Q 044606           38 MEKHKCR--LCFKNFSNGRALGGHMRSHMLNLPI   69 (413)
Q Consensus        38 ~~~~~C~--iC~K~F~~~~~L~~HmR~Htg~~p~   69 (413)
                      .++|.|+  .|++.|.+...|..||++|++++||
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~   35 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPF   35 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCE
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCc
Confidence            3578998  5999999999999999999884444

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.51  E-value=1.2e-16  Score=123.91  Aligned_cols=84  Identities=11%  Similarity=-0.005  Sum_probs=76.7

Q ss_pred             CCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhccc
Q 044606          274 RGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGH  353 (413)
Q Consensus       274 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H  353 (413)
                      +++|.|.+|++.|.....|..|+++|+++++|.|..|++.|.  ....|..|+++|.+ ++|.|..|++.|.+...|..|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~--~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H   77 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA--RSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENE   77 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES--SHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccC--CHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHH
Confidence            478999999999999999999999999999999999999994  66788889888774 899999999999999999999


Q ss_pred             ccccccC
Q 044606          354 KRTHVTG  360 (413)
Q Consensus       354 ~r~H~~~  360 (413)
                      ++.+++.
T Consensus        78 ~~~~h~~   84 (88)
T 1llm_C           78 VARLKKL   84 (88)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887653

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.51  E-value=9.1e-15  Score=104.68  Aligned_cols=28  Identities=25%  Similarity=0.524  Sum_probs=26.5

Q ss_pred             ccccccCcccccCCChhhhhhHHHhhcC
Q 044606           38 MEKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        38 ~~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      -++|+|.+|||.|.+.+.|.+|||+|+|
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~   29 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLG   29 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHT
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCC
Confidence            3789999999999999999999999999

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.51  E-value=3.9e-15  Score=113.07  Aligned_cols=30  Identities=27%  Similarity=0.556  Sum_probs=25.3

Q ss_pred             ccccCcccccCCChhhhhhHHHhhcCCCCC
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRSHMLNLPI   69 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~   69 (413)
                      +|+|++|++.|.+...|..||++|++++||
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   30 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPY   30 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCE
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCe
Confidence            578999999999999999999999885555

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=4.8e-15  Score=112.00  Aligned_cols=72  Identities=14%  Similarity=0.133  Sum_probs=66.9

Q ss_pred             CCCCccccCC--ccccccChhhhhhhhh-hcCCCcccCCCC--CCcccccccchhhhhhcCCCCCCCccccCCcCcccC
Q 044606          272 RSRGKYKCET--CKKVFKSYQALGGHRA-SHKKIKFYTPVQ--ETELDQENAGASINLASPPLSVKKVHECPVCFRVFS  345 (413)
Q Consensus       272 ~~~~~~~C~~--C~k~F~~~~~L~~H~~-~H~~~kp~~C~~--C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~  345 (413)
                      +++++|.|..  |++.|.....|..|++ +|+++++|.|..  |++.|.  ....|..|+++|++++||.|.+|++.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFN--FKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEES--SHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccC--CHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            5678999997  9999999999999999 799999999999  999994  6778999999999999999999999994

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=1e-14  Score=118.62  Aligned_cols=40  Identities=18%  Similarity=0.184  Sum_probs=31.8

Q ss_pred             ccccccccccccccCcccccCCChhhhhhHHHh--hcCCCCC
Q 044606           30 KKRKSLFVMEKHKCRLCFKNFSNGRALGGHMRS--HMLNLPI   69 (413)
Q Consensus        30 ~~~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~--Htg~~p~   69 (413)
                      .+.......++|+|.+|+|.|.+...|..||++  |++.+++
T Consensus         9 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~   50 (115)
T 2dmi_A            9 LYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNH   50 (115)
T ss_dssp             CCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCC
T ss_pred             hheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCC
Confidence            455556677899999999999999999999999  5554433

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.49  E-value=2.3e-15  Score=115.13  Aligned_cols=78  Identities=21%  Similarity=0.168  Sum_probs=73.0

Q ss_pred             cccc--CCccccccChhhhhhhhhhcCCCcccCCCC--CCcccccccchhhhhhcCCCCCCCccccCC---cCcccCCch
Q 044606          276 KYKC--ETCKKVFKSYQALGGHRASHKKIKFYTPVQ--ETELDQENAGASINLASPPLSVKKVHECPV---CFRVFSSGQ  348 (413)
Q Consensus       276 ~~~C--~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~--C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~---C~k~F~~~~  348 (413)
                      ||.|  ..|++.|.....|..|+++|+++++|.|..  |++.|.  ....|..|+++|++   |.|.+   |++.|.+..
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~--~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~   75 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS--LPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWT   75 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEES--SHHHHHHHHHHHHS---EECCSCSSCCCEESSHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccC--CHHHHHHHHHHhCC---CCCCCCCCCCCccCCHH
Confidence            6899  899999999999999999999999999988  999994  67788899999988   99999   999999999


Q ss_pred             hhcccccccc
Q 044606          349 ALGGHKRTHV  358 (413)
Q Consensus       349 ~L~~H~r~H~  358 (413)
                      .|..|+++|+
T Consensus        76 ~l~~H~~~hh   85 (85)
T 2j7j_A           76 LYLKHVAECH   85 (85)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhcC
Confidence            9999999885

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.46  E-value=4.1e-14  Score=110.73  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=26.2

Q ss_pred             cccccccCcccccCCChhhhhhHHHhhcCCCCC
Q 044606           37 VMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPI   69 (413)
Q Consensus        37 ~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~   69 (413)
                      ..++|+|++|++.|.+...|..||++|++++||
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   36 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPY   36 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSE
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCCCCCC
Confidence            456788999999999999999998888874433

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.45  E-value=2.3e-14  Score=122.73  Aligned_cols=87  Identities=21%  Similarity=0.221  Sum_probs=79.5

Q ss_pred             CCCccccCCccccccChhhhhhhhhh-cCCCcc--------cCCCCCCcccccccchhhhhhcCCCCCCCccccCC--cC
Q 044606          273 SRGKYKCETCKKVFKSYQALGGHRAS-HKKIKF--------YTPVQETELDQENAGASINLASPPLSVKKVHECPV--CF  341 (413)
Q Consensus       273 ~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~kp--------~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~--C~  341 (413)
                      ...+|.|.+|++.|.+...|..|+++ |.+.++        |.|..|++.|.  ....|..|+++|.++++|.|.+  |+
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~--~~~~l~~H~~~h~~~~~~~C~~~~C~   99 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK--AKYKLVNHIRVHTGEKPFPCPFPGCG   99 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCS--SHHHHHHHTHHHHCCCSEECSCTTTC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccC--CHHHHHHHHHhcCCCCcccCCcCCCC
Confidence            46789999999999999999999997 888765        89999999994  6778999999999999999998  99


Q ss_pred             cccCCchhhcccccccccCC
Q 044606          342 RVFSSGQALGGHKRTHVTGL  361 (413)
Q Consensus       342 k~F~~~~~L~~H~r~H~~~~  361 (413)
                      +.|.+...|..|+++|+++.
T Consensus       100 ~~f~~~~~L~~H~~~h~~~~  119 (155)
T 2rpc_A          100 KIFARSENLKIHKRTHTGEK  119 (155)
T ss_dssp             CEESCHHHHHHHHTTTCSSC
T ss_pred             CccCCHHHHHHHHHhhCCCC
Confidence            99999999999999998764

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=7.4e-15  Score=116.24  Aligned_cols=75  Identities=8%  Similarity=-0.031  Sum_probs=48.9

Q ss_pred             ccChhhhhhhhhhcCCCcccCCCCCCcccccc-cchhhhhhcCCCCC-CCccccCCcCcccCCchhhcccccccccCCC
Q 044606          286 FKSYQALGGHRASHKKIKFYTPVQETELDQEN-AGASINLASPPLSV-KKVHECPVCFRVFSSGQALGGHKRTHVTGLV  362 (413)
Q Consensus       286 F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~-~~~~l~~h~~~h~g-~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~~  362 (413)
                      +.....+..|+++|+++++|.|..|++.|  . ....|..|+++|.+ +++|.|.+|++.|.+...|..|+++|+++..
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f--~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVT--RKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCC--SSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCCh--hhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            33344444555555555555555555554  2 33344455555555 6788999999999999999999999997654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=2.8e-14  Score=109.42  Aligned_cols=79  Identities=13%  Similarity=0.037  Sum_probs=57.6

Q ss_pred             HHHhhhhcCCCCccccCCccccccChhhhhhhhhhcCCC----cccCCCCCCcccccccchhhhhhcCCCCCCCccccCC
Q 044606          264 FKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKI----KFYTPVQETELDQENAGASINLASPPLSVKKVHECPV  339 (413)
Q Consensus       264 ~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~----kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~  339 (413)
                      +..|++.|.++++|.|.+|++.|.....|..|+++|.+.    ++|.|..|++.|.  ....|..|+++|.+++++.|..
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~--~~~~L~~H~~~h~~~~~~~~~~   80 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFT--RRNTMARHADNCAGPDGVEGEN   80 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEES--CHHHHHHHHHHCCCCCSCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhC--CHHHHHHHHHHccCCCCcccCC
Confidence            346788888889999999999999999999998876654    5666666666663  4555666666666666666666


Q ss_pred             cCccc
Q 044606          340 CFRVF  344 (413)
Q Consensus       340 C~k~F  344 (413)
                      |+..|
T Consensus        81 ~~~~~   85 (86)
T 1x6h_A           81 SGPSS   85 (86)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            66654

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=4.4e-14  Score=106.34  Aligned_cols=66  Identities=21%  Similarity=0.244  Sum_probs=54.2

Q ss_pred             hcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCcccc
Q 044606          270 KNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHEC  337 (413)
Q Consensus       270 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C  337 (413)
                      .+.++++|.|.+|++.|.....|..|+++|+++++|.|..|++.|  .....|..|+++|++++||+|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f--~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF--IQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEE--SSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCcc--CCHHHHHHHHHHhCCCCCCCC
Confidence            356788999999999999999999999999988888888877777  356667777777777777776

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=2.8e-14  Score=105.98  Aligned_cols=65  Identities=28%  Similarity=0.488  Sum_probs=52.6

Q ss_pred             hhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCc
Q 044606          268 NNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSG  347 (413)
Q Consensus       268 ~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~  347 (413)
                      .+.|+++++|.|.+|++.|.....|..|+++|++                              ++||.|.+|++.|.+.
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~------------------------------~~~~~C~~C~~~f~~~   55 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTG------------------------------EKPYKCLECGKAFSQN   55 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGC------------------------------SCCEECSSSCCEESSH
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCC------------------------------CCCeECCCCCcccCCH
Confidence            3456677777777777777777777777777765                              6788999999999999


Q ss_pred             hhhcccccccccCCC
Q 044606          348 QALGGHKRTHVTGLV  362 (413)
Q Consensus       348 ~~L~~H~r~H~~~~~  362 (413)
                      ..|..|+++|+++..
T Consensus        56 ~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A           56 SGLINHQRIHTSGPS   70 (72)
T ss_dssp             HHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHhcCCCCC
Confidence            999999999987754

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=3.7e-14  Score=112.90  Aligned_cols=70  Identities=13%  Similarity=0.110  Sum_probs=62.2

Q ss_pred             hcCCCCccccCCccccccChhhhhhhhh-hc---CCCcccCCCCCCcccccccchhhhhh-cCCCCCCCccccCCcC
Q 044606          270 KNRSRGKYKCETCKKVFKSYQALGGHRA-SH---KKIKFYTPVQETELDQENAGASINLA-SPPLSVKKVHECPVCF  341 (413)
Q Consensus       270 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~-~H---~~~kp~~C~~C~~~f~~~~~~~l~~h-~~~h~g~kp~~C~~C~  341 (413)
                      ..++++||.|.+|++.|.....|..|++ +|   ++++||.|..|++.|.  ....|..| +++|+|++||.|.++.
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~--~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK--RYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEES--STHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccC--CHHHHHHHHHHhcCCCCCeeCCccc
Confidence            4578999999999999999999999998 59   6689999999999994  66778899 7899999999999854

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=1.9e-14  Score=108.34  Aligned_cols=68  Identities=16%  Similarity=0.142  Sum_probs=42.6

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcC-CCCCC-CccccCCcCcccCCchhhcccccccccCCCC
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASP-PLSVK-KVHECPVCFRVFSSGQALGGHKRTHVTGLVA  363 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~-~h~g~-kp~~C~~C~k~F~~~~~L~~H~r~H~~~~~~  363 (413)
                      +|+++|++++||.|..|++.|.  ....|..|++ .|.++ ++|.|++|++.|.+...|..|+++|++...+
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFT--QSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEES--CHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             ccccccCCCCCeECCCcCchhC--CHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            3444444444444444444442  2333444433 33333 7899999999999999999999998876544

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=1.4e-13  Score=101.54  Aligned_cols=62  Identities=21%  Similarity=0.259  Sum_probs=53.0

Q ss_pred             cCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhh
Q 044606          271 NRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQAL  350 (413)
Q Consensus       271 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L  350 (413)
                      |+++++|.|.+|++.|.....|..|+++|++                              +++|.|.+|++.|.+...|
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~------------------------------~~~~~C~~C~~~f~~~~~L   53 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCT------------------------------DRPFKCNYCSFDTKQPSNL   53 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCC------------------------------SCSEECSSSSCEESSHHHH
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCC------------------------------CCCEeCCCCCCccCCHHHH
Confidence            5677888888888888888888888888876                              5678888999999999999


Q ss_pred             cccccccccCCC
Q 044606          351 GGHKRTHVTGLV  362 (413)
Q Consensus       351 ~~H~r~H~~~~~  362 (413)
                      ..|+++|+++..
T Consensus        54 ~~H~~~h~~~~p   65 (70)
T 1x5w_A           54 SKHMKKFHGDMS   65 (70)
T ss_dssp             HHHHHHHHSSSC
T ss_pred             HHHHHHHhCCCC
Confidence            999999998654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=1.2e-13  Score=111.22  Aligned_cols=34  Identities=24%  Similarity=0.250  Sum_probs=26.8

Q ss_pred             cccccccccCcccccCCChhhhhhHHHhhcCCCCC
Q 044606           35 LFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPI   69 (413)
Q Consensus        35 ~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~   69 (413)
                      +...++|+| +|++.|.+...|..||++|++++||
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~   38 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPY   38 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSE
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCc
Confidence            345678889 8999999999999999888874444

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.38  E-value=1.5e-13  Score=105.55  Aligned_cols=61  Identities=25%  Similarity=0.321  Sum_probs=50.1

Q ss_pred             cCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhh
Q 044606          271 NRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQAL  350 (413)
Q Consensus       271 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L  350 (413)
                      +...++|.|.+|++.|.+...|..|+++|++                              ++||.|.+|+|.|.+...|
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~------------------------------~k~~~C~~C~k~F~~~~~L   72 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHA------------------------------AQVFPCKYCPATFYSSPGL   72 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSC------------------------------SSSEECTTSSCEESSHHHH
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccC------------------------------CCccCCCCCCCEeCCHHHH
Confidence            5567788999999999999999998888887                              5677888899999999999


Q ss_pred             cccc-cccccCC
Q 044606          351 GGHK-RTHVTGL  361 (413)
Q Consensus       351 ~~H~-r~H~~~~  361 (413)
                      .+|+ ++|.++.
T Consensus        73 ~~H~~~~H~~E~   84 (85)
T 2lv2_A           73 TRHINKCHPSEN   84 (85)
T ss_dssp             HHHHHTTCTTCC
T ss_pred             HHhCcccCcCCC
Confidence            9996 5676653

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=1.7e-13  Score=108.07  Aligned_cols=70  Identities=20%  Similarity=0.287  Sum_probs=52.2

Q ss_pred             hHHHHHhhhhcCCCCccccCCccccc-cChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCC
Q 044606          261 SEEFKSFNNKNRSRGKYKCETCKKVF-KSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPV  339 (413)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~C~~C~k~F-~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~  339 (413)
                      ...+..|.+.+.++++|.|.+|++.| ....+|..|+++| +                              ++||.|.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~------------------------------~k~~~C~~   67 (96)
T 2ctd_A           19 GSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-K------------------------------QEMFTCHH   67 (96)
T ss_dssp             TCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-C------------------------------CCCCCCSS
T ss_pred             chHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-C------------------------------CCCeECCC
Confidence            33445566666677777777777777 7777777777777 6                              56778888


Q ss_pred             cCcccCCchhhccc-ccccccCC
Q 044606          340 CFRVFSSGQALGGH-KRTHVTGL  361 (413)
Q Consensus       340 C~k~F~~~~~L~~H-~r~H~~~~  361 (413)
                      |+|.|.+...|..| +++|++..
T Consensus        68 Cgk~F~~~~~L~~H~~~~H~~~p   90 (96)
T 2ctd_A           68 CGKQLRSLAGMKYHVMANHNSLP   90 (96)
T ss_dssp             SCCCCSSHHHHHHHHHHHTCCCS
T ss_pred             CCCeeCCHHHHHHHhHHhcCCCC
Confidence            88888999999999 88887543

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.36  E-value=3.1e-13  Score=106.59  Aligned_cols=33  Identities=27%  Similarity=0.528  Sum_probs=26.4

Q ss_pred             cccccccCc--ccccCCChhhhhhHHHhhcCCCCC
Q 044606           37 VMEKHKCRL--CFKNFSNGRALGGHMRSHMLNLPI   69 (413)
Q Consensus        37 ~~~~~~C~i--C~K~F~~~~~L~~HmR~Htg~~p~   69 (413)
                      ..++|.|.+  |++.|.....|..||++|+++++|
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~   46 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPY   46 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCE
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCe
Confidence            456788887  888888888888888888886666

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.35  E-value=3.4e-13  Score=103.99  Aligned_cols=31  Identities=29%  Similarity=0.638  Sum_probs=25.2

Q ss_pred             cccccCc--ccccCCChhhhhhHHHhhcCCCCC
Q 044606           39 EKHKCRL--CFKNFSNGRALGGHMRSHMLNLPI   69 (413)
Q Consensus        39 ~~~~C~i--C~K~F~~~~~L~~HmR~Htg~~p~   69 (413)
                      ..|.|++  |++.|.+...|..||++|++++||
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~   36 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPY   36 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCSSCCE
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCc
Confidence            5688888  888888888888888888875554

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.34  E-value=2.5e-13  Score=101.32  Aligned_cols=60  Identities=28%  Similarity=0.534  Sum_probs=48.6

Q ss_pred             cCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhh
Q 044606          271 NRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQAL  350 (413)
Q Consensus       271 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L  350 (413)
                      +.++++|.|.+|++.|.....|..|+++|+++                              ++|.|.+|++.|.+...|
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~------------------------------~~~~C~~C~k~f~~~~~L   61 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGE------------------------------KPYRCNICGAQFNRPANL   61 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCC------------------------------CSEECTTTCCEESCHHHH
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCC------------------------------CCEECCCCCchhCCHHHH
Confidence            56788999999999999999999999999874                              466666777777777777


Q ss_pred             cccccccccC
Q 044606          351 GGHKRTHVTG  360 (413)
Q Consensus       351 ~~H~r~H~~~  360 (413)
                      ..|+++|+++
T Consensus        62 ~~H~~~H~~~   71 (74)
T 2lce_A           62 KTHTRIHSGE   71 (74)
T ss_dssp             HHHHHHHCCS
T ss_pred             HHHHHhcCCC
Confidence            7777777654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.34  E-value=1.8e-13  Score=96.46  Aligned_cols=57  Identities=25%  Similarity=0.379  Sum_probs=46.9

Q ss_pred             CCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhcc
Q 044606          273 SRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGG  352 (413)
Q Consensus       273 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~  352 (413)
                      ++++|.|.+|++.|.....|..|+++|++                              ++||.|++|++.|.+...|..
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~------------------------------~~~~~C~~C~~~f~~~~~l~~   50 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTG------------------------------EKPYKCEFCEYAAAQKTSLRY   50 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHC------------------------------CCCEECSSSSCEESSHHHHHH
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCC------------------------------CCCcCCCCCcchhCCHHHHHH
Confidence            35789999999999999999999988887                              567888899999999999999


Q ss_pred             ccccccc
Q 044606          353 HKRTHVT  359 (413)
Q Consensus       353 H~r~H~~  359 (413)
                      |+++|++
T Consensus        51 H~~~hh~   57 (57)
T 3uk3_C           51 HLERHHK   57 (57)
T ss_dssp             HHHHHC-
T ss_pred             HHHHhcC
Confidence            9999874

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=2.4e-13  Score=104.08  Aligned_cols=72  Identities=11%  Similarity=0.117  Sum_probs=62.6

Q ss_pred             hhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCC----CccccCCcCcccCCchhhcccccccccCCCCC
Q 044606          291 ALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVK----KVHECPVCFRVFSSGQALGGHKRTHVTGLVAS  364 (413)
Q Consensus       291 ~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~----kp~~C~~C~k~F~~~~~L~~H~r~H~~~~~~~  364 (413)
                      .|..|+++|+++++|.|..|++.|.  ....|..|++.|.+.    ++|.|.+|++.|.+...|..|+++|+++....
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~--~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~   77 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFR--QKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE   77 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEES--SHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCC
T ss_pred             CcccccceecCCCCCcCCCCCCccC--CHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcc
Confidence            5788999999999999999999994  667788888755544    89999999999999999999999999876543

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.33  E-value=3.4e-14  Score=117.97  Aligned_cols=83  Identities=14%  Similarity=0.076  Sum_probs=71.0

Q ss_pred             CCccccCCcccccc------ChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCc
Q 044606          274 RGKYKCETCKKVFK------SYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSG  347 (413)
Q Consensus       274 ~~~~~C~~C~k~F~------~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~  347 (413)
                      ++.+.|.+|++.|.      ....|..|+ .|++++||.|..|++.|.  ....|..|+++|  ++||.|.+|++.|.+.
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~--~~~~l~~H~~~H--~~~~~C~~C~k~f~~~  113 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFS--SSVSLKQHIRYT--EHTKVCPVCKKEFTST  113 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEES--SHHHHHHHHHHT--CCCCBCTTTCCBCSSH
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccC--CHhHHHHHHHHC--CCCCCCCCCCcccCCH
Confidence            35577888877665      566666776 699999999999999994  677888999988  8999999999999999


Q ss_pred             hhhcccccccccCC
Q 044606          348 QALGGHKRTHVTGL  361 (413)
Q Consensus       348 ~~L~~H~r~H~~~~  361 (413)
                      ..|..|+++|++..
T Consensus       114 ~~l~~H~~~h~~~~  127 (129)
T 2wbt_A          114 DSALDHVCKKHNIC  127 (129)
T ss_dssp             HHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHCCcc
Confidence            99999999999764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=4.6e-13  Score=100.84  Aligned_cols=64  Identities=17%  Similarity=0.369  Sum_probs=53.7

Q ss_pred             cCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhh
Q 044606          271 NRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQAL  350 (413)
Q Consensus       271 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L  350 (413)
                      |+++++|.|.+|++.|.....|..|+++|++..                           ++++|.|.+|++.|.+...|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~---------------------------~~~~~~C~~C~k~f~~~~~L   54 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETV---------------------------AALRFPCEFCGKRFEKPDSV   54 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHT---------------------------TTCCEECTTTCCEESSHHHH
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccC---------------------------CCcccCCCCCCchhCCHHHH
Confidence            678899999999999999999999999987521                           26789999999999999999


Q ss_pred             cccccccccCC
Q 044606          351 GGHKRTHVTGL  361 (413)
Q Consensus       351 ~~H~r~H~~~~  361 (413)
                      ..|++.++.+.
T Consensus        55 ~~H~~~~H~~~   65 (78)
T 2d9h_A           55 AAHRSKSHPAL   65 (78)
T ss_dssp             HHHHHHTSTTT
T ss_pred             HHHHHHhCCCC
Confidence            99996544433

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=2.6e-13  Score=98.67  Aligned_cols=62  Identities=24%  Similarity=0.578  Sum_probs=50.7

Q ss_pred             hhcCCCCccccCCccccccChhhhhhhhhh-cCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCc
Q 044606          269 NKNRSRGKYKCETCKKVFKSYQALGGHRAS-HKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSG  347 (413)
Q Consensus       269 ~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~  347 (413)
                      +.|+++++|.|.+|++.|.....|..|+++ |.                             +++++|.|++|++.|.+.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~-----------------------------~~~~~~~C~~C~k~f~~~   53 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK-----------------------------RNVKVYPCPFCFKEFTRK   53 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSS-----------------------------SSCCCEECTTTCCEESCH
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcC-----------------------------CCCcCeECCCCCCccCCH
Confidence            346677888888888888888888888876 52                             126789999999999999


Q ss_pred             hhhccccccccc
Q 044606          348 QALGGHKRTHVT  359 (413)
Q Consensus       348 ~~L~~H~r~H~~  359 (413)
                      ..|..|+++|++
T Consensus        54 ~~L~~H~~~~H~   65 (66)
T 2drp_A           54 DNMTAHVKIIHK   65 (66)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcC
Confidence            999999999875

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=3.1e-13  Score=106.81  Aligned_cols=75  Identities=16%  Similarity=0.167  Sum_probs=67.4

Q ss_pred             HHHHHhhhhcCCCCccccCCcccccc-ChhhhhhhhhhcCC-CcccCCCCCCcccccccchhhhhhcCCCCCCCccccC
Q 044606          262 EEFKSFNNKNRSRGKYKCETCKKVFK-SYQALGGHRASHKK-IKFYTPVQETELDQENAGASINLASPPLSVKKVHECP  338 (413)
Q Consensus       262 ~~~~~~~~~~~~~~~~~C~~C~k~F~-~~~~L~~H~~~H~~-~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~  338 (413)
                      ..+..|++.|.++++|.|.+|++.|. ....|..|+++|++ +++|.|.+|++.|  .....|..|+++|++++|+...
T Consensus        10 ~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F--~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           10 GPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQF--KSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             CSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCC--SCHHHHHHHHHHHSCSCSSCCC
T ss_pred             CcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCcc--CCHHHHHHHHHHHcCCCCCCCC
Confidence            34567889999999999999999999 99999999999999 9999999999999  4777899999999999986544

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.30  E-value=8.3e-13  Score=92.94  Aligned_cols=55  Identities=25%  Similarity=0.442  Sum_probs=47.4

Q ss_pred             ccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhccccc
Q 044606          276 KYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKR  355 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r  355 (413)
                      ||.|.+|++.|.....|..|+++|++                              +++|.|++|++.|.+...|..|++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~------------------------------~~~~~C~~C~~~f~~~~~l~~H~~   50 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTD------------------------------VRPYHCTYCNFSFKTKGNLTKHMK   50 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSS------------------------------CCCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCC------------------------------CCCccCCCCCchhcCHHHHHHHHH
Confidence            58899999999999999999888887                              567788888899999999999999


Q ss_pred             ccccC
Q 044606          356 THVTG  360 (413)
Q Consensus       356 ~H~~~  360 (413)
                      +|+++
T Consensus        51 ~h~~~   55 (57)
T 1bbo_A           51 SKAHS   55 (57)
T ss_dssp             SSSSC
T ss_pred             Hhccc
Confidence            88765

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=1.5e-12  Score=97.99  Aligned_cols=40  Identities=20%  Similarity=0.301  Sum_probs=37.2

Q ss_pred             CccccCC--ccccccChhhhhhhhhhcCCCcccCCCCCCccc
Q 044606          275 GKYKCET--CKKVFKSYQALGGHRASHKKIKFYTPVQETELD  314 (413)
Q Consensus       275 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f  314 (413)
                      ++|.|.+  |++.|.....|..|+++|++++||.|..|++.|
T Consensus        37 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A           37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             CCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            4578888  999999999999999999999999999999988

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=9.5e-13  Score=98.89  Aligned_cols=66  Identities=15%  Similarity=0.160  Sum_probs=59.8

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhcccccccccCC
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGL  361 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~  361 (413)
                      .+...+.++++|.|..|++.|.  ....|..|+++|+++++|.|.+|++.|.+...|..|+++|+++.
T Consensus         8 ~~~~~~~~~~~~~C~~C~~~f~--~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   73 (77)
T 2cot_A            8 RSEWQQRERRRYKCDECGKSFS--HSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG   73 (77)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCS--CHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCC
T ss_pred             CCcCcCCCCCCEECCCCCcccC--CHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            4556788899999999999994  67789999999999999999999999999999999999998764

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=1.4e-12  Score=92.93  Aligned_cols=57  Identities=30%  Similarity=0.577  Sum_probs=47.6

Q ss_pred             CccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhcccc
Q 044606          275 GKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHK  354 (413)
Q Consensus       275 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~  354 (413)
                      ++|.|.+|++.|.....|..|+++|++                              +++|.|++|++.|.+...|..|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~------------------------------~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTN------------------------------EKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTS------------------------------SCSEECTTTCCEESSHHHHHHHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCC------------------------------CCCccCCCCCCccCCHHHHHHHH
Confidence            478888888888888888888888876                              56788888999999999999996


Q ss_pred             -cccccCC
Q 044606          355 -RTHVTGL  361 (413)
Q Consensus       355 -r~H~~~~  361 (413)
                       ++|.++.
T Consensus        51 ~~~H~~~~   58 (60)
T 2adr_A           51 QKIHSGNL   58 (60)
T ss_dssp             TTTSCCSS
T ss_pred             HHHcCCcC
Confidence             6787654

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.26  E-value=6.5e-13  Score=99.01  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             CCCCCCccccCCcCcccCCchhhcccccccccCC
Q 044606          328 PLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGL  361 (413)
Q Consensus       328 ~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~  361 (413)
                      .+.++++|+|.+|++.|.+...|..|+++|+++.
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~   44 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEK   44 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCC
Confidence            4667899999999999999999999999998764

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=5.9e-13  Score=98.48  Aligned_cols=66  Identities=17%  Similarity=0.053  Sum_probs=31.4

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|++.|.++++|.|.+|++.|.....|..       +++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         8 ~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~--~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            8 KRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSC--QEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCS--CCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhc--CHHHHHHHHHhhcCCCCCCCCCC
Confidence            34444455555555555555555444443       44455555544442  33344444444544455554444

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.21  E-value=3.1e-12  Score=94.91  Aligned_cols=60  Identities=30%  Similarity=0.553  Sum_probs=50.2

Q ss_pred             hhcCCCCccccC--CccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCC
Q 044606          269 NKNRSRGKYKCE--TCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSS  346 (413)
Q Consensus       269 ~~~~~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~  346 (413)
                      ..+.++++|.|.  .|++.|.....|..|+++|.+                              +++|.|++|++.|.+
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~------------------------------~~~~~C~~C~~~f~~   61 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTG------------------------------QKPFQCRICMRNFSR   61 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHC------------------------------CCCEECTTTCCEESC
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCC------------------------------CCCeECCCCCchhCC
Confidence            446778888887  488888888888888888876                              567888889999999


Q ss_pred             chhhcccccccc
Q 044606          347 GQALGGHKRTHV  358 (413)
Q Consensus       347 ~~~L~~H~r~H~  358 (413)
                      ...|..|+++|+
T Consensus        62 ~~~l~~H~~~Ht   73 (73)
T 1f2i_G           62 SDHLTTHIRTHT   73 (73)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999884

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.17  E-value=7.6e-12  Score=95.24  Aligned_cols=30  Identities=33%  Similarity=0.428  Sum_probs=24.4

Q ss_pred             cccc--CcccccCCChhhhhhHHHhhcCCCCC
Q 044606           40 KHKC--RLCFKNFSNGRALGGHMRSHMLNLPI   69 (413)
Q Consensus        40 ~~~C--~iC~K~F~~~~~L~~HmR~Htg~~p~   69 (413)
                      +|+|  ++|++.|.....|..||++|++++||
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~   32 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPY   32 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCE
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCe
Confidence            5788  88888888888888888888885554

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.16  E-value=1.7e-11  Score=94.00  Aligned_cols=29  Identities=28%  Similarity=0.423  Sum_probs=26.8

Q ss_pred             cccccccCcccccCCChhhhhhHHHhhcC
Q 044606           37 VMEKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        37 ~~~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      ..+.|.|++|+|.|.+...|.+|||+|+|
T Consensus        25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~   53 (85)
T 2lv2_A           25 SAECHLCPVCGESFASKGAQERHLRLLHA   53 (85)
T ss_dssp             CCTTEECTTSCCEESSHHHHHHHHHTTSC
T ss_pred             CCCCEECCCCCCCcCcHHHHhhhhhhccC
Confidence            56789999999999999999999999998

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=3.6e-12  Score=94.16  Aligned_cols=65  Identities=12%  Similarity=0.061  Sum_probs=56.0

Q ss_pred             ChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhcccccccccCC
Q 044606          288 SYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGL  361 (413)
Q Consensus       288 ~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~  361 (413)
                      +...|..|+++|+++++|.|..|++.|....  .|..       +++|.|.+|++.|.+...|..|+++|+++.
T Consensus         2 ~~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~--~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~   66 (73)
T 2ctu_A            2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRS--TLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKK   66 (73)
T ss_dssp             CCCSCCCCCCCCCCCSEEECSSSCCEEECCC--CCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCC
T ss_pred             cchhHHHHHHHhCCCCCeeCCcccchhCCHH--HhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCC
Confidence            3567899999999999999999999996433  3322       789999999999999999999999998754

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.13  E-value=2.6e-11  Score=89.08  Aligned_cols=31  Identities=19%  Similarity=0.178  Sum_probs=27.4

Q ss_pred             ccccCCccccccChhhhhhhhhhcCCCcccC
Q 044606          276 KYKCETCKKVFKSYQALGGHRASHKKIKFYT  306 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~  306 (413)
                      +|.|.+|++.|.....|..|+++|++++|..
T Consensus        37 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A           37 PFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            4789999999999999999999999988754

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.11  E-value=1.1e-11  Score=98.46  Aligned_cols=63  Identities=14%  Similarity=-0.012  Sum_probs=55.6

Q ss_pred             hhcCCCcccCCCCCCcccccccchhhhhhcC-CC---CCCCccccCCcCcccCCchhhccc-ccccccCC
Q 044606          297 ASHKKIKFYTPVQETELDQENAGASINLASP-PL---SVKKVHECPVCFRVFSSGQALGGH-KRTHVTGL  361 (413)
Q Consensus       297 ~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~-~h---~g~kp~~C~~C~k~F~~~~~L~~H-~r~H~~~~  361 (413)
                      ..-+|++||.|..|++.|.  ....|..|++ +|   ++++||.|.+||+.|.+...|..| +++|+++.
T Consensus        11 ~~~~gekpy~C~~Cgk~F~--~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgek   78 (102)
T 2ghf_A           11 QNKKVEGGYECKYCTFQTP--DLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEE   78 (102)
T ss_dssp             TCCCCCSSEECSSCSCEES--CHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCC
T ss_pred             ccCCCCcCcCCCCCCCccC--CHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCC
Confidence            3457899999999999994  6778889987 58   678999999999999999999999 89999864

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=8.5e-11  Score=91.60  Aligned_cols=32  Identities=25%  Similarity=0.167  Sum_probs=26.5

Q ss_pred             cccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          277 YKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       277 ~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      |.|.+|++.|.....|..|+++|++++||.|.
T Consensus        63 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             TTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             cCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            78888888888888888888888888888775

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.10  E-value=1.1e-11  Score=89.23  Aligned_cols=58  Identities=5%  Similarity=-0.004  Sum_probs=42.1

Q ss_pred             hhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhcccc
Q 044606          292 LGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHK  354 (413)
Q Consensus       292 L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~  354 (413)
                      |..|+++|++++||.|..|++.|..  ...|.   ++|++++||.|.+||+.|....++..+.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~--~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~~~   59 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTD--LEANQ---LFDPMTGTFRCTFCHTEVEEDESAMPKK   59 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEH--HHHHH---HEETTTTEEBCSSSCCBCEECTTCSCCC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhcc--HHHhH---hhcCCCCCEECCCCCCccccCccccccc
Confidence            5567777777777777777777753  22332   5677788888889999998888776654

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=2.2e-11  Score=88.55  Aligned_cols=57  Identities=19%  Similarity=0.392  Sum_probs=46.4

Q ss_pred             CCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccC-CcCcccCCchhh
Q 044606          272 RSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECP-VCFRVFSSGQAL  350 (413)
Q Consensus       272 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~-~C~k~F~~~~~L  350 (413)
                      -+.++|.|.+|++.|. ...|..|+++ ++                              ++||.|+ +|++.|.....|
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~------------------------------~~p~~C~~~C~k~f~~~~~L   53 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CP------------------------------RLPVACPNQCGVGTVAREDL   53 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CS------------------------------SSEEECTTCCSCCEEETTTH
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cC------------------------------CcCccCCcccCcccccHHHH
Confidence            4678899999999999 8889999887 66                              5677777 888888888888


Q ss_pred             cccccccccC
Q 044606          351 GGHKRTHVTG  360 (413)
Q Consensus       351 ~~H~r~H~~~  360 (413)
                      ..|+++|...
T Consensus        54 ~~H~~~hc~~   63 (66)
T 2eod_A           54 PGHLKDSCNT   63 (66)
T ss_dssp             HHHHHTTSSS
T ss_pred             HHHHHhhccc
Confidence            8888887643

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.09  E-value=7.8e-11  Score=82.61  Aligned_cols=29  Identities=31%  Similarity=0.492  Sum_probs=25.1

Q ss_pred             CccccCCccccccChhhhhhhhhhcCCCc
Q 044606          275 GKYKCETCKKVFKSYQALGGHRASHKKIK  303 (413)
Q Consensus       275 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  303 (413)
                      ++|.|.+|++.|.....|..|+++|++++
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A           28 RPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            35788899999999999999999998865

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.09  E-value=2.6e-11  Score=90.95  Aligned_cols=69  Identities=12%  Similarity=0.123  Sum_probs=59.3

Q ss_pred             HHhhhhcCCCCccccCCccccccChhhhhhhhh-hcCCC-cccCCCCCCcccccccchhhhhhcCC-CCCCCcc
Q 044606          265 KSFNNKNRSRGKYKCETCKKVFKSYQALGGHRA-SHKKI-KFYTPVQETELDQENAGASINLASPP-LSVKKVH  335 (413)
Q Consensus       265 ~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~-kp~~C~~C~~~f~~~~~~~l~~h~~~-h~g~kp~  335 (413)
                      ..|++.|+++++|.|.+|++.|.....|..|++ .|.++ ++|.|..|++.|.  ....|..|++. |.++.|.
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~--~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA--RKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEES--SHHHHHHHHHHTSCCSCCC
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccC--CHHHHHHHHHHhCCCCCCC
Confidence            458889999999999999999999999999997 78875 8999999999994  67788888875 5555553

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.08  E-value=7.6e-11  Score=92.69  Aligned_cols=32  Identities=22%  Similarity=0.434  Sum_probs=26.7

Q ss_pred             CccccCCccccccChhhhhhh-hhhcCCCcccC
Q 044606          275 GKYKCETCKKVFKSYQALGGH-RASHKKIKFYT  306 (413)
Q Consensus       275 ~~~~C~~C~k~F~~~~~L~~H-~~~H~~~kp~~  306 (413)
                      ++|.|.+|++.|.....|..| +++|+++..|.
T Consensus        61 k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~~   93 (96)
T 2ctd_A           61 EMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGP   93 (96)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSCS
T ss_pred             CCeECCCCCCeeCCHHHHHHHhHHhcCCCCCCC
Confidence            347899999999999999999 99998755443

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6e-11  Score=79.46  Aligned_cols=44  Identities=30%  Similarity=0.481  Sum_probs=37.3

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            56678888889999999999988889989888888888888766

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5.4e-11  Score=79.74  Aligned_cols=44  Identities=25%  Similarity=0.351  Sum_probs=38.8

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            66778899999999999999999999999999999888888776

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5e-11  Score=79.87  Aligned_cols=44  Identities=23%  Similarity=0.353  Sum_probs=36.6

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|.++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56778888888888888888888888888888888888887765

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.08  E-value=5.7e-11  Score=79.56  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=37.6

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            56778888889999999999999999999888988888888766

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.07  E-value=5e-11  Score=79.93  Aligned_cols=45  Identities=27%  Similarity=0.341  Sum_probs=40.0

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367788899999999999999999999999999999888888776

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=4.1e-11  Score=80.33  Aligned_cols=45  Identities=22%  Similarity=0.286  Sum_probs=36.8

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366778888888888888888888888888888888888877765

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.7e-11  Score=79.61  Aligned_cols=44  Identities=20%  Similarity=0.346  Sum_probs=37.8

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66778888899999999999999999999999988888888765

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.07  E-value=6.3e-11  Score=79.30  Aligned_cols=45  Identities=27%  Similarity=0.365  Sum_probs=38.4

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366778888999999999999999999999999998888888766

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=5.5e-11  Score=79.65  Aligned_cols=44  Identities=27%  Similarity=0.358  Sum_probs=38.8

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66778889999999999999999999999999999888888776

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.4e-11  Score=79.63  Aligned_cols=44  Identities=23%  Similarity=0.320  Sum_probs=38.9

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            66778889999999999999999999999999999888888776

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=6e-11  Score=79.51  Aligned_cols=44  Identities=25%  Similarity=0.302  Sum_probs=36.7

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56678888888888888888888888888888888888887765

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=4.5e-11  Score=93.22  Aligned_cols=62  Identities=13%  Similarity=-0.009  Sum_probs=41.8

Q ss_pred             CCccccCCccccccChhhhhhhhhh-cCCCcc--------cCCCCCCcccccccchhhhhhcCCCCCCCcccc
Q 044606          274 RGKYKCETCKKVFKSYQALGGHRAS-HKKIKF--------YTPVQETELDQENAGASINLASPPLSVKKVHEC  337 (413)
Q Consensus       274 ~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~kp--------~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C  337 (413)
                      ...|.|.+|++.|.....|..|+++ |+++++        |.|..|++.|.  ....|..|+++|++++||.|
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C   93 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK--AKYKLVNHIRVHTGEKSGPS   93 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCS--SHHHHHHHHHHHHTCCCCSS
T ss_pred             cCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccC--CHHHHHHHHHhcCCCCCCCC
Confidence            3458899999999999999999998 999887        44444444442  33344444444444444444

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.1e-11  Score=79.81  Aligned_cols=44  Identities=27%  Similarity=0.437  Sum_probs=36.7

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            56778888888888888888888888888888888888887766

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.06  E-value=5.2e-11  Score=79.82  Aligned_cols=45  Identities=24%  Similarity=0.365  Sum_probs=39.8

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367778899999999999999999999999999999888888776

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.1e-11  Score=80.96  Aligned_cols=45  Identities=24%  Similarity=0.309  Sum_probs=40.5

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            467788999999999999999999999999999999888888776

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.7e-11  Score=79.98  Aligned_cols=45  Identities=27%  Similarity=0.355  Sum_probs=39.4

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467788899999999999999999999999999999888888765

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.6e-11  Score=79.61  Aligned_cols=45  Identities=27%  Similarity=0.408  Sum_probs=38.8

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            366778889999999999999999999999999999888888766

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.4e-11  Score=79.65  Aligned_cols=45  Identities=24%  Similarity=0.323  Sum_probs=39.4

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467788889999999999999999999999999999888888776

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.06  E-value=6.2e-11  Score=87.51  Aligned_cols=57  Identities=28%  Similarity=0.522  Sum_probs=48.4

Q ss_pred             cCCCCccccCC--ccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCC--cCcccCC
Q 044606          271 NRSRGKYKCET--CKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPV--CFRVFSS  346 (413)
Q Consensus       271 ~~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~--C~k~F~~  346 (413)
                      +...++|.|.+  |++.|.....|..|+++|++                              ++||.|.+  |++.|.+
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~------------------------------~~~~~C~~~~C~k~f~~   61 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTG------------------------------EKPFSCSWKGCERRFAR   61 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSS------------------------------SCSEECCCTTCCCEESS
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCC------------------------------CCCccCCCCCCCcccCC
Confidence            45678899988  99999999999999999987                              45677754  8999999


Q ss_pred             chhhccccccc
Q 044606          347 GQALGGHKRTH  357 (413)
Q Consensus       347 ~~~L~~H~r~H  357 (413)
                      ...|..|+++|
T Consensus        62 ~~~l~~H~~~H   72 (72)
T 2epa_A           62 SDELSRHRRTH   72 (72)
T ss_dssp             HHHHHHHTTTC
T ss_pred             HHHHHhHhhcC
Confidence            99999998887

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=4.9e-11  Score=79.89  Aligned_cols=45  Identities=24%  Similarity=0.352  Sum_probs=38.5

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366778888999999999999999999999999998888888765

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=6.7e-11  Score=79.18  Aligned_cols=44  Identities=27%  Similarity=0.486  Sum_probs=39.1

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66778899999999999999999999999999999888888776

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=5.6e-11  Score=78.81  Aligned_cols=44  Identities=23%  Similarity=0.329  Sum_probs=39.4

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45678899999999999999999999999999999988888776

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.2e-11  Score=79.74  Aligned_cols=45  Identities=24%  Similarity=0.273  Sum_probs=40.2

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367788899999999999999999999999999999888888876

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.7e-11  Score=79.56  Aligned_cols=45  Identities=22%  Similarity=0.343  Sum_probs=38.2

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            366778888899999999999999999999999988888888766

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=7.6e-11  Score=78.89  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=35.8

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56677888888888888888888888888888888877777765

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=5.4e-11  Score=79.68  Aligned_cols=45  Identities=24%  Similarity=0.371  Sum_probs=39.0

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            366778889999999999999999999999999999888888776

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=5.9e-11  Score=79.51  Aligned_cols=45  Identities=27%  Similarity=0.405  Sum_probs=39.5

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467788899999999999999999999999999999888888776

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=6.5e-11  Score=79.25  Aligned_cols=44  Identities=25%  Similarity=0.406  Sum_probs=35.3

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56677788888888888888888888888888888777777765

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=6.6e-11  Score=79.24  Aligned_cols=44  Identities=27%  Similarity=0.440  Sum_probs=36.3

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56677888888888888888888888888888888888877765

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=5.5e-11  Score=79.66  Aligned_cols=45  Identities=24%  Similarity=0.383  Sum_probs=40.0

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|.++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            367788899999999999999999999999999999888888776

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.05  E-value=6.9e-11  Score=79.15  Aligned_cols=44  Identities=27%  Similarity=0.459  Sum_probs=37.5

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            66778888889999999999999999999888888888888765

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.05  E-value=9e-11  Score=78.53  Aligned_cols=44  Identities=23%  Similarity=0.348  Sum_probs=38.3

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            66778888999999999999999999999999998888888766

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=6e-11  Score=79.45  Aligned_cols=45  Identities=29%  Similarity=0.414  Sum_probs=39.9

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            366778899999999999999999999999999999888888776

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=6.9e-11  Score=79.11  Aligned_cols=44  Identities=23%  Similarity=0.280  Sum_probs=36.3

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56678888888888888888888888888888888888877765

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.04  E-value=1.2e-10  Score=86.15  Aligned_cols=32  Identities=28%  Similarity=0.207  Sum_probs=27.0

Q ss_pred             ccccccccccCcccccCCChhhhhhHHHhhcC
Q 044606           34 SLFVMEKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        34 ~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      .+...++|+|++|+|.|.+...|.+||++|++
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   39 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTG   39 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcCC
Confidence            34456789999999999999999999999887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=6.4e-11  Score=79.31  Aligned_cols=45  Identities=27%  Similarity=0.437  Sum_probs=40.2

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|.++++|.|.+|++.|.+...|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            367788899999999999999999999999999999888888776

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=7.5e-11  Score=78.93  Aligned_cols=45  Identities=24%  Similarity=0.374  Sum_probs=39.7

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367778899999999999999999999999999999888888776

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.04  E-value=8.3e-11  Score=78.82  Aligned_cols=44  Identities=25%  Similarity=0.363  Sum_probs=38.7

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |.+.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56678889999999999999999999999999999888888776

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=8.9e-11  Score=78.61  Aligned_cols=45  Identities=27%  Similarity=0.352  Sum_probs=40.1

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            366778899999999999999999999999999999888888876

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=5.3e-11  Score=79.73  Aligned_cols=45  Identities=24%  Similarity=0.335  Sum_probs=40.1

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367788899999999999999999999999999999888888776

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=6.5e-11  Score=79.29  Aligned_cols=44  Identities=25%  Similarity=0.368  Sum_probs=37.1

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            56778888888888888888888888888888888888887766

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=5.4e-11  Score=79.68  Aligned_cols=45  Identities=24%  Similarity=0.411  Sum_probs=40.5

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      +|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            467788999999999999999999999999999999988888876

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.03  E-value=1.4e-10  Score=81.24  Aligned_cols=32  Identities=28%  Similarity=0.460  Sum_probs=25.4

Q ss_pred             ccccccCcccccCCChhhhhhHHHhhcCCCCC
Q 044606           38 MEKHKCRLCFKNFSNGRALGGHMRSHMLNLPI   69 (413)
Q Consensus        38 ~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~   69 (413)
                      .++|+|++|++.|.+...|..||++|++++||
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   33 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPY   33 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCE
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCc
Confidence            46899999999999999999999999984444

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=9e-11  Score=78.53  Aligned_cols=45  Identities=24%  Similarity=0.284  Sum_probs=39.3

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|.++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366778899999999999999999999999999999888888776

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=6.5e-11  Score=79.28  Aligned_cols=45  Identities=27%  Similarity=0.428  Sum_probs=40.2

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367788899999999999999999999999999999888888776

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=6.4e-11  Score=79.40  Aligned_cols=44  Identities=20%  Similarity=0.339  Sum_probs=39.6

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56778899999999999999999999999999999888888776

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=6.8e-11  Score=79.19  Aligned_cols=44  Identities=30%  Similarity=0.448  Sum_probs=39.0

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            66778899999999999999999999999999999888888776

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=9.1e-11  Score=78.55  Aligned_cols=45  Identities=24%  Similarity=0.365  Sum_probs=36.3

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            356678888888888888888888888888888888888877654

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=9.4e-11  Score=78.49  Aligned_cols=45  Identities=22%  Similarity=0.344  Sum_probs=40.3

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366788999999999999999999999999999999988888776

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.2e-10  Score=78.24  Aligned_cols=44  Identities=23%  Similarity=0.316  Sum_probs=36.7

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhh-hcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRA-SHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~kp~~C~~C  310 (413)
                      |++.|.++++|.|.+|++.|.....|..|++ +|++++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            5677888888888888888888888888888 8888888887765

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=8e-11  Score=78.88  Aligned_cols=44  Identities=25%  Similarity=0.368  Sum_probs=39.8

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      |++.|.++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            56778899999999999999999999999999999888888876

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.3e-10  Score=77.82  Aligned_cols=45  Identities=24%  Similarity=0.383  Sum_probs=40.2

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367788999999999999999999999999999999998888764

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.98  E-value=3.7e-10  Score=80.06  Aligned_cols=27  Identities=30%  Similarity=0.594  Sum_probs=23.3

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      ++|+|++|++.|.+...|..||++|++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTN   27 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCC
Confidence            368899999999999999999988887

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.98  E-value=2.7e-10  Score=77.05  Aligned_cols=43  Identities=30%  Similarity=0.543  Sum_probs=38.3

Q ss_pred             hcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCc
Q 044606          270 KNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETE  312 (413)
Q Consensus       270 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~  312 (413)
                      .+..+++|.|.+|++.|.....|..|+++|++++||.|.+|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            3677899999999999999999999999999988888888864

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2e-10  Score=76.86  Aligned_cols=45  Identities=9%  Similarity=-0.112  Sum_probs=36.4

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFT--QNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCS--SHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeC--CHHHHHHHhhhcCCCCCCCCCCC
Confidence            5788888888888888888884  56677888888888888888877

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.3e-10  Score=76.49  Aligned_cols=45  Identities=4%  Similarity=-0.229  Sum_probs=37.7

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFS--FNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCS--SHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhC--CHHHHHHHHHHcCCCCCCCCCCC
Confidence            5788888888888888888884  66778888888888888888887

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.97  E-value=3.5e-10  Score=78.65  Aligned_cols=45  Identities=20%  Similarity=0.220  Sum_probs=36.1

Q ss_pred             hcCCCCccccCCccccccChhhhhhhhh-hcCCCcccCCCCCCccc
Q 044606          270 KNRSRGKYKCETCKKVFKSYQALGGHRA-SHKKIKFYTPVQETELD  314 (413)
Q Consensus       270 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~kp~~C~~C~~~f  314 (413)
                      .|.++++|.|.+|++.|.....|..|++ +|++++||.|..|++.|
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F   51 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP   51 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Confidence            3667889999999999999999999986 88887766666666655

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=4.4e-10  Score=84.24  Aligned_cols=30  Identities=20%  Similarity=0.237  Sum_probs=27.7

Q ss_pred             ccccccccCcccccCCChhhhhhHHHhhcC
Q 044606           36 FVMEKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        36 ~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      ...++|+|.+|+|.|.+...|.+||++|++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   32 (78)
T 2d9h_A            3 SGSSGLQCEICGFTCRQKASLNWHQRKHAE   32 (78)
T ss_dssp             CSCCCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             CCCcCeECCCCCCeeCCHHHHHHHHHHhhc
Confidence            356789999999999999999999999998

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=1.8e-10  Score=77.07  Aligned_cols=45  Identities=9%  Similarity=-0.185  Sum_probs=38.1

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFT--LKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEES--SHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccC--CHHHHHHHHHHhCCCCCCCCCCC
Confidence            5888889988999999988884  66778888888888889988887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.96  E-value=2e-10  Score=76.90  Aligned_cols=45  Identities=11%  Similarity=-0.116  Sum_probs=35.9

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFS--QASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCS--SHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccC--CHHHHHHHHHHcCCCCCcCCCCC
Confidence            5778888888888888888873  56677788888888888888877

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.4e-10  Score=76.47  Aligned_cols=43  Identities=26%  Similarity=0.425  Sum_probs=37.4

Q ss_pred             hhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          268 NNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       268 ~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .+.|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4567888999999999999999999999999999888888776

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.6e-10  Score=76.23  Aligned_cols=45  Identities=9%  Similarity=-0.138  Sum_probs=38.0

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFS--QTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCS--SHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccC--CHHHHHHHHHhcCCCCCCCCCCC
Confidence            5888889989999998888884  66778888888888889988887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3e-10  Score=75.97  Aligned_cols=45  Identities=9%  Similarity=-0.108  Sum_probs=38.4

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFS--DHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBS--SHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeC--CHHHHHHHHHHhCCCCCCCCCCC
Confidence            4788899999999999998884  66778888889999999999887

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=2.3e-10  Score=76.62  Aligned_cols=44  Identities=32%  Similarity=0.447  Sum_probs=39.8

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      +|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            36778999999999999999999999999999999999998863

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.95  E-value=2e-10  Score=76.79  Aligned_cols=45  Identities=11%  Similarity=-0.071  Sum_probs=34.9

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFS--LKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEES--SHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhC--CHHHHHHHHHHhCCCCCCCCCCC
Confidence            5777888888888888888773  56677778888888888888776

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.4e-10  Score=76.48  Aligned_cols=45  Identities=9%  Similarity=-0.105  Sum_probs=37.8

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|+++|++++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFR--HNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEES--SHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhC--ChHHHHHHHhhcCCCCCCCCCCC
Confidence            5788888888899988888884  66778888888888888888887

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.3e-10  Score=76.55  Aligned_cols=45  Identities=9%  Similarity=-0.109  Sum_probs=37.2

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFR--RNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEES--SHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhC--CHHHHHHHHHHcCCCCCCCCCCC
Confidence            5788888888888888888884  66678888888888888888887

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.7e-10  Score=76.23  Aligned_cols=43  Identities=26%  Similarity=0.367  Sum_probs=36.8

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3667788888999999999999999999999999988888885

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.95  E-value=3.9e-10  Score=69.88  Aligned_cols=32  Identities=28%  Similarity=0.316  Sum_probs=30.2

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcCCCCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHMLNLPIP   70 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~   70 (413)
                      ++|+|++|+|.|...+.|..||++|+|++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            47999999999999999999999999999983

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.5e-10  Score=75.70  Aligned_cols=45  Identities=11%  Similarity=-0.115  Sum_probs=37.8

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFS--SKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCS--CHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhC--ChHHHHHHHHHhCCCCCCCCCCC
Confidence            4788888889999998888884  66778888888888889988887

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.3e-10  Score=75.81  Aligned_cols=44  Identities=25%  Similarity=0.403  Sum_probs=38.0

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            36677888999999999999999999999999999988888853

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.8e-10  Score=75.42  Aligned_cols=43  Identities=30%  Similarity=0.451  Sum_probs=36.5

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            5677888888999999999999999999988888888888753

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.4e-10  Score=76.48  Aligned_cols=45  Identities=7%  Similarity=-0.075  Sum_probs=34.7

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFT--RKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEES--CHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhC--CHHHHHHHHHHhCCCCCCCCCCC
Confidence            4777888888888888888773  56677778888888888888776

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.94  E-value=2e-10  Score=76.81  Aligned_cols=45  Identities=9%  Similarity=-0.087  Sum_probs=34.9

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFS--RNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEES--SHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhC--CHHHHHHHHHhcCCCCCCCCCCC
Confidence            5777888888888888888773  56677778888888888888776

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.2e-10  Score=76.61  Aligned_cols=44  Identities=25%  Similarity=0.444  Sum_probs=39.6

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            46778899999999999999999999999999999999998863

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=2.7e-10  Score=76.15  Aligned_cols=45  Identities=9%  Similarity=-0.217  Sum_probs=37.1

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|++++||.|..|++.|.  ....|..|+++|++++||+|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFC--YISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEES--SHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccC--CHHHHHHHHHHhCCCCCCCCCCC
Confidence            5788888888888888888884  56678888888888888888877

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2e-10  Score=76.84  Aligned_cols=45  Identities=9%  Similarity=-0.120  Sum_probs=35.4

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFT--KKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEES--SHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccC--CHHHHHHHHHHhCCCCCCCCCCC
Confidence            5778888888888888888873  56677778888888888888776

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.1e-10  Score=75.30  Aligned_cols=44  Identities=25%  Similarity=0.411  Sum_probs=37.9

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36677888999999999999999999999999999988888853

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.1e-10  Score=76.78  Aligned_cols=45  Identities=16%  Similarity=-0.093  Sum_probs=33.6

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|++++||.|..|++.|.  ....|..|+++|++++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFS--HRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEES--SHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccC--CHHHHHHHHHHhcCCCCCCCCCC
Confidence            4777778777777777777773  55667777777777777777776

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.93  E-value=3.6e-10  Score=73.91  Aligned_cols=42  Identities=19%  Similarity=0.301  Sum_probs=37.1

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            456788899999999999999999999999999999888873

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.93  E-value=3.8e-10  Score=75.11  Aligned_cols=42  Identities=19%  Similarity=0.231  Sum_probs=38.6

Q ss_pred             hcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCC
Q 044606          270 KNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQET  311 (413)
Q Consensus       270 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~  311 (413)
                      .|+++++|.|.+|++.|.....|..|+++|+++++|.|+.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            478899999999999999999999999999999988888875

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.1e-10  Score=75.31  Aligned_cols=43  Identities=30%  Similarity=0.481  Sum_probs=36.0

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            5667888888888888888888888888888888888888753

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.1e-10  Score=75.26  Aligned_cols=42  Identities=21%  Similarity=0.324  Sum_probs=36.3

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      |++.|.++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            667788888999999999999999999999999888888875

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.4e-10  Score=75.71  Aligned_cols=44  Identities=25%  Similarity=0.407  Sum_probs=38.9

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            36778889999999999999999999999999999999888863

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.5e-10  Score=75.20  Aligned_cols=43  Identities=23%  Similarity=0.415  Sum_probs=36.0

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|+.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            5667888888899889999988888888888888888888753

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.7e-10  Score=74.96  Aligned_cols=43  Identities=21%  Similarity=0.324  Sum_probs=38.0

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888999999999999999999999999999988888863

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.7e-10  Score=75.04  Aligned_cols=42  Identities=26%  Similarity=0.390  Sum_probs=36.0

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      |++.|.++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            566788888899999999999999999998888888888875

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.6e-10  Score=76.27  Aligned_cols=45  Identities=7%  Similarity=-0.149  Sum_probs=32.2

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYN--QRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEES--SSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccC--CHHHHHHHHHHcCCCCCCCCCCC
Confidence            4677777777777777777773  55566777777777777777766

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2e-10  Score=76.85  Aligned_cols=45  Identities=11%  Similarity=-0.104  Sum_probs=35.5

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFS--RAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCS--CHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccC--chHHHHHHHHhcCCCCCCCCCCC
Confidence            5778888888888888888873  56677778888888888888876

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.93  E-value=3.5e-10  Score=75.69  Aligned_cols=43  Identities=21%  Similarity=0.355  Sum_probs=39.0

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      |++.|.++++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778899999999999999999999999999999999998863

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.2e-10  Score=75.80  Aligned_cols=45  Identities=9%  Similarity=-0.130  Sum_probs=34.6

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFT--DRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEES--SHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhC--CHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777888888888888888773  56677778888888888888765

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.7e-10  Score=77.21  Aligned_cols=45  Identities=9%  Similarity=-0.127  Sum_probs=32.8

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFT--IRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEES--SHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhC--CHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777777777777777777773  55667777777777777777766

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.3e-10  Score=75.82  Aligned_cols=45  Identities=9%  Similarity=-0.113  Sum_probs=34.6

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|+++|++++||.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYN--RRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCS--SHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhC--CHHHHHHHHHhcCCCCCCCCCCC
Confidence            4777888888888888888773  56667778888888888888776

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.5e-10  Score=75.03  Aligned_cols=43  Identities=26%  Similarity=0.374  Sum_probs=37.6

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            6677888999999999999999999999999999988888863

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.1e-10  Score=75.33  Aligned_cols=43  Identities=23%  Similarity=0.468  Sum_probs=38.6

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      +|++.|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3677888999999999999999999999999999999998885

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.2e-10  Score=76.60  Aligned_cols=45  Identities=11%  Similarity=-0.178  Sum_probs=34.6

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFG--LSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEES--SHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhC--CHHHHHHHHHhcCCCCCCCCCCC
Confidence            5777888888888888887773  56667777778888888888776

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.9e-10  Score=76.08  Aligned_cols=43  Identities=23%  Similarity=0.417  Sum_probs=38.4

Q ss_pred             hhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          268 NNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       268 ~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      .+.|.++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4568889999999999999999999999999999888888776

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.7e-10  Score=73.31  Aligned_cols=41  Identities=20%  Similarity=0.293  Sum_probs=36.1

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTP  307 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C  307 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            56678889999999999999999999999999999888877

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.3e-10  Score=75.14  Aligned_cols=43  Identities=21%  Similarity=0.383  Sum_probs=38.0

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5677889999999999999999999999999999988888863

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.92  E-value=3.9e-10  Score=78.41  Aligned_cols=49  Identities=20%  Similarity=0.045  Sum_probs=44.1

Q ss_pred             hhcCCCcccCCCCCCcccccccchhhhhhcC-CCCCCCccccCCcCcccCCc
Q 044606          297 ASHKKIKFYTPVQETELDQENAGASINLASP-PLSVKKVHECPVCFRVFSSG  347 (413)
Q Consensus       297 ~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~-~h~g~kp~~C~~C~k~F~~~  347 (413)
                      ..|++++||.|..|++.|.  ....|..|++ +|++++||.|.+|++.|+++
T Consensus         5 ~~~~~~k~~~C~~C~k~f~--~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFS--RPDHLNGHIKQVHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCCCSSCCEECSSSCCEES--SHHHHHHHHHHTSCCCCCCCSSSSCCSSCCC
T ss_pred             CCCCCCCCeECCCCCcccC--CHHHHHHHHHHhcCCCCCccCCCCCCCCCCC
Confidence            4688999999999999994  6778999987 99999999999999999864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4e-10  Score=75.39  Aligned_cols=44  Identities=27%  Similarity=0.425  Sum_probs=39.3

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      +|++.|+++++|.|.+|++.|.....|..|+++|++++||.|..
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36677899999999999999999999999999999999998863

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=3.7e-10  Score=74.74  Aligned_cols=43  Identities=21%  Similarity=0.375  Sum_probs=38.2

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      +|++.|.++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            4677888999999999999999999999999999998888874

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.2e-10  Score=76.60  Aligned_cols=45  Identities=9%  Similarity=-0.136  Sum_probs=35.1

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFT--QNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECS--SHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhC--CHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777888888888888888773  56677778888888888888776

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.92  E-value=2e-10  Score=76.93  Aligned_cols=45  Identities=9%  Similarity=-0.150  Sum_probs=32.4

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFS--QTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCS--CHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhC--CHHHHHHHHHHcCCCCCCCCCCC
Confidence            4677777777777777777773  55667777777777777777766

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.92  E-value=3e-10  Score=75.92  Aligned_cols=45  Identities=11%  Similarity=-0.150  Sum_probs=34.7

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFR--WASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEES--SHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccC--ChHHHHHHHHHhCCCCCCCCCCC
Confidence            4777888888888888888773  56667777888888888888776

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4e-10  Score=75.31  Aligned_cols=43  Identities=28%  Similarity=0.482  Sum_probs=39.2

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            6678899999999999999999999999999999999998863

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.4e-10  Score=76.45  Aligned_cols=45  Identities=11%  Similarity=-0.147  Sum_probs=34.2

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFC--GRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCS--SHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhC--CHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777788888888888887773  55667777777888888888776

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=5e-10  Score=74.83  Aligned_cols=42  Identities=26%  Similarity=0.448  Sum_probs=35.6

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566788888888888888888888888888888888888875

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=5e-10  Score=73.17  Aligned_cols=41  Identities=20%  Similarity=0.312  Sum_probs=37.0

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTP  307 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C  307 (413)
                      |++.|.++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            45678899999999999999999999999999999998887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=3.4e-10  Score=75.72  Aligned_cols=45  Identities=9%  Similarity=-0.188  Sum_probs=34.2

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFI--CRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEES--CHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhC--CHHHHHHHHHHhCCCCCCCCCCC
Confidence            4777788888888888887773  55667777777888888888776

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=98.91  E-value=9.5e-11  Score=90.18  Aligned_cols=56  Identities=13%  Similarity=0.125  Sum_probs=51.9

Q ss_pred             CcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhccccccccc
Q 044606          302 IKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       302 ~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~  359 (413)
                      ++||.|..|++.|.  ....|..|+++|++++||.|.+|++.|.+...|..|+++|++
T Consensus         1 ek~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C            1 MKPFQCRICMRNFS--RSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCCEECTTTCCEES--CHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CCCCcCCCCCCccC--CHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC
Confidence            58999999999994  677899999999999999999999999999999999999984

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.6e-10  Score=76.25  Aligned_cols=45  Identities=7%  Similarity=-0.135  Sum_probs=34.5

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFT--QNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEES--SHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccC--CHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777888888888888887773  56667777777888888888776

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3.5e-10  Score=75.65  Aligned_cols=45  Identities=7%  Similarity=-0.094  Sum_probs=37.1

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYN--SKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEES--CHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccC--CHHHHHHHHHhhCCCCCCCCCCC
Confidence            4788888888888888888884  66678888888888888888877

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=5.8e-10  Score=74.57  Aligned_cols=42  Identities=24%  Similarity=0.456  Sum_probs=37.2

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      |.+.|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566788899999999999999999999999999998888885

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=5.3e-10  Score=74.66  Aligned_cols=42  Identities=24%  Similarity=0.392  Sum_probs=36.5

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            667788888999999999999999999999999988888885

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4.2e-10  Score=74.39  Aligned_cols=43  Identities=23%  Similarity=0.348  Sum_probs=36.8

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3667788889999999999999999999999999988888874

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=5.6e-10  Score=73.03  Aligned_cols=41  Identities=22%  Similarity=0.340  Sum_probs=33.8

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTP  307 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C  307 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            45667788888888888888888888888888888888776

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=5.6e-10  Score=73.75  Aligned_cols=42  Identities=21%  Similarity=0.241  Sum_probs=34.9

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            566788888888888888888888888888888888888773

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=3.4e-10  Score=75.63  Aligned_cols=44  Identities=27%  Similarity=0.396  Sum_probs=39.6

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      .|++.|.++++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            36778899999999999999999999999999999999998864

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.90  E-value=2.7e-10  Score=76.25  Aligned_cols=45  Identities=11%  Similarity=-0.074  Sum_probs=33.9

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFS--RRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBS--STTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccC--CHHHHHHHHHHcCCCCCCCCCCC
Confidence            4777788888888888887774  55667777777777888888776

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=6.7e-10  Score=74.49  Aligned_cols=45  Identities=11%  Similarity=-0.136  Sum_probs=37.7

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcC-CCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASP-PLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~-~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|++ +|++++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~--~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFI--QNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBS--SHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhC--ChHHHHHHhHhhcCCCCCCCCCCC
Confidence            4788888888899988888884  6677888888 8888888888887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2e-10  Score=76.75  Aligned_cols=45  Identities=7%  Similarity=-0.233  Sum_probs=33.2

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFI--QSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEES--SHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhC--CHHHHHHHHHHhCCCCCCCCCCC
Confidence            4777777777777777777773  55667777777777777777776

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.2e-10  Score=76.67  Aligned_cols=45  Identities=7%  Similarity=-0.183  Sum_probs=31.5

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFS--RKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEES--SHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccC--cHHHHHHHHHHcCCCCCCCCCCC
Confidence            4677777777777777777773  55566677777777777777766

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.8e-10  Score=73.66  Aligned_cols=43  Identities=21%  Similarity=0.335  Sum_probs=38.4

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            3667889999999999999999999999999999999988874

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.7e-10  Score=76.14  Aligned_cols=45  Identities=7%  Similarity=-0.136  Sum_probs=32.6

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFT--WKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCS--SHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhC--CHHHHHHHHHhcCCCCCCCCCCC
Confidence            4777777777777777777773  55667777777777777777766

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=9.3e-10  Score=73.51  Aligned_cols=41  Identities=24%  Similarity=0.173  Sum_probs=36.2

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      .......++|+|++|+|.|...+.|.+||++|++++||.+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            4 GSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            34455678999999999999999999999999999999664

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=3e-10  Score=75.91  Aligned_cols=45  Identities=7%  Similarity=-0.210  Sum_probs=32.1

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFC--WKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEES--SSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccC--CHHHHHHHHHHhCCCCCCCCCCC
Confidence            4677777777777777777773  55566777777777777777766

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.2e-10  Score=76.62  Aligned_cols=45  Identities=9%  Similarity=-0.134  Sum_probs=32.0

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFT--QNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEES--SHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccC--CHHHHHHHHHHHCCCCCCCCCCC
Confidence            4677777777777777777773  55566777777777777777766

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.6e-10  Score=86.51  Aligned_cols=70  Identities=10%  Similarity=-0.002  Sum_probs=58.1

Q ss_pred             hhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhcccccccccCCCC
Q 044606          289 YQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLVA  363 (413)
Q Consensus       289 ~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~~~  363 (413)
                      +..|..|+++|.+++||.|..|+..|   ....|..|. .|.+++||.|+.|++.|. ...|..|+++|.++...
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~C~~~~---~~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~~~   71 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQHCDLEL---SILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREGSG   71 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSSSCCEE---CHHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBSSS
T ss_pred             chHHHhhCcccCCCcccCCcccChHh---hHHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCcCC
Confidence            34677888888888888888888888   366778888 788899999999999988 58999999999887543

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.89  E-value=3.8e-10  Score=75.49  Aligned_cols=45  Identities=9%  Similarity=-0.093  Sum_probs=34.5

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFS--GKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEES--SHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccC--CHHHHHHHHHHcCCCCCCCCCCC
Confidence            4677888888888888888773  55667777778888888888776

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.5e-10  Score=75.14  Aligned_cols=43  Identities=23%  Similarity=0.393  Sum_probs=39.1

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3677889999999999999999999999999999999999886

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.7e-10  Score=77.30  Aligned_cols=45  Identities=7%  Similarity=-0.221  Sum_probs=28.2

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFG--RHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEES--SHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccC--CHHHHHHHHHHHcCCCCCCCCCC
Confidence            4666666666666666666663  44556666666666666666665

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=6e-10  Score=74.52  Aligned_cols=42  Identities=21%  Similarity=0.415  Sum_probs=35.8

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCC-CcccCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKK-IKFYTPV  308 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~-~kp~~C~  308 (413)
                      |++.|.++++|.|.+|++.|.....|..|+++|++ ++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            56778888888888898888888888888888888 8888875

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=8e-10  Score=72.18  Aligned_cols=39  Identities=28%  Similarity=0.244  Sum_probs=34.7

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCC
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQ   71 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~   71 (413)
                      ......++|+|++|+|.|...+.|..||++|+|++||.+
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            4 GSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             cccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            345567899999999999999999999999999999953

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1e-09  Score=73.33  Aligned_cols=41  Identities=22%  Similarity=0.133  Sum_probs=36.1

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      .......++|+|.+|+|.|.+...|..|||+|++++||.+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            4 GSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455678999999999999999999999999999999654

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=2.2e-10  Score=76.60  Aligned_cols=45  Identities=9%  Similarity=-0.122  Sum_probs=30.8

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFT--QNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEES--SSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhC--CHHHHHHHHHhcCCCCCCCCCCC
Confidence            4667777777777777777763  45566667777777777777666

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5.8e-10  Score=74.56  Aligned_cols=43  Identities=28%  Similarity=0.451  Sum_probs=39.0

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            3677889999999999999999999999999999999999885

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.88  E-value=6.2e-10  Score=72.71  Aligned_cols=41  Identities=20%  Similarity=0.279  Sum_probs=37.1

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTP  307 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C  307 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            45678899999999999999999999999999999998887

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=8.2e-10  Score=72.22  Aligned_cols=38  Identities=24%  Similarity=0.283  Sum_probs=34.3

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCC
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIP   70 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~   70 (413)
                      ......++|+|++|+|.|.+.+.|..||++|++++||.
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2eos_A            4 GSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS   41 (42)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTT
T ss_pred             cccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCC
Confidence            34556789999999999999999999999999999995

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=2.6e-10  Score=75.48  Aligned_cols=44  Identities=5%  Similarity=-0.158  Sum_probs=29.8

Q ss_pred             hhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          295 HRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       295 H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      |+++|++++||.|..|++.|.  ....|..|+++|++++||.|.+|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFS--SKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEES--SHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccC--CHHHHHHHHHHhCCCCCCCCCCC
Confidence            566777777777777777663  45566666666777777777665

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.2e-09  Score=73.00  Aligned_cols=40  Identities=28%  Similarity=0.301  Sum_probs=35.7

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ..+...++|+|.+|+|.|.+...|.+||++|++++||.+.
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3455678999999999999999999999999999999654

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.2e-09  Score=72.99  Aligned_cols=41  Identities=27%  Similarity=0.248  Sum_probs=36.2

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      .......++|+|.+|+|.|.+...|..||++|++++||.+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            4 GSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            34455678999999999999999999999999999999654

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1.2e-09  Score=72.23  Aligned_cols=39  Identities=21%  Similarity=0.141  Sum_probs=34.8

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCC
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQ   71 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~   71 (413)
                      ......++|+|.+|+|.|...+.|..|||+|++++||.+
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            344567889999999999999999999999999999964

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1e-09  Score=73.30  Aligned_cols=40  Identities=25%  Similarity=0.217  Sum_probs=35.7

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ......++|+|++|+|.|.+...|..||++|++++||.+.
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            5 SSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             cCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            4455678999999999999999999999999999999664

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.88  E-value=4.1e-10  Score=93.03  Aligned_cols=68  Identities=13%  Similarity=-0.022  Sum_probs=59.0

Q ss_pred             chHHHHHhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCC
Q 044606          260 ESEEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVK  332 (413)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~  332 (413)
                      ....+..|+ .|.++++|.|.+|++.|.....|..|+++|  ++||.|..|++.|.  ....|..|+++|+|.
T Consensus        59 ~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~--~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           59 ESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFT--STDSALDHVCKKHNI  126 (129)
T ss_dssp             THHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCS--SHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccC--CHHHHHHHHHHHCCc
Confidence            445556666 578899999999999999999999999999  89999999999994  677889999888775

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1e-09  Score=72.45  Aligned_cols=39  Identities=26%  Similarity=0.161  Sum_probs=35.1

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCC
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQ   71 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~   71 (413)
                      ......++|+|++|+|.|.+...|..||++|+|++||.+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            5 SSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             CCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             cCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            445567899999999999999999999999999999964

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.9e-10  Score=76.92  Aligned_cols=45  Identities=7%  Similarity=-0.165  Sum_probs=29.1

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFT--DRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEES--SHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhC--CHHHHHHHHHhcCCCCCCCCCCC
Confidence            4666677666666666666663  45556666666666666666665

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.87  E-value=1e-09  Score=71.72  Aligned_cols=38  Identities=21%  Similarity=0.186  Sum_probs=34.2

Q ss_pred             ccccccccccCcccccCCChhhhhhHHHhhcCCCCCCC
Q 044606           34 SLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQ   71 (413)
Q Consensus        34 ~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~   71 (413)
                      .....++|+|++|+|.|.+.+.|..||++|+|++||.+
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            34457889999999999999999999999999999964

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=4.7e-10  Score=73.38  Aligned_cols=41  Identities=24%  Similarity=0.314  Sum_probs=37.4

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTP  307 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C  307 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            56678899999999999999999999999999999998887

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.3e-09  Score=72.65  Aligned_cols=41  Identities=24%  Similarity=0.176  Sum_probs=36.2

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      .......++|+|.+|+|.|.+...|..||++|++++||.+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            4 GSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455678999999999999999999999999999999654

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=2.7e-10  Score=76.19  Aligned_cols=45  Identities=9%  Similarity=-0.138  Sum_probs=32.5

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFH--RHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEES--SHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeC--ChHHHHHHHHHcCCCCCCCCCCC
Confidence            4677777777777777777773  55667777777777777777766

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.2e-09  Score=72.95  Aligned_cols=41  Identities=29%  Similarity=0.325  Sum_probs=36.2

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      .......++|+|++|+|.|.+...|.+||++|++++||.+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            34455678999999999999999999999999999999654

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=2.1e-10  Score=76.77  Aligned_cols=45  Identities=11%  Similarity=-0.098  Sum_probs=29.9

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      +|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFS--VYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEES--CHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhC--CHHHHHHHHHHcCCCCCCCCCCC
Confidence            4666777777777777776663  45556666666666777777665

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=9.2e-10  Score=73.48  Aligned_cols=41  Identities=24%  Similarity=0.242  Sum_probs=36.3

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      .......++|+|++|+|.|.+.+.|..||++|++++||.+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            4 GSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455678999999999999999999999999999999664

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=7.8e-10  Score=73.14  Aligned_cols=42  Identities=19%  Similarity=0.357  Sum_probs=37.3

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      |++.|.++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            667788999999999999999999999999999998888873

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1e-09  Score=73.25  Aligned_cols=41  Identities=24%  Similarity=0.202  Sum_probs=36.2

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      .......++|+|++|+|.|.+...|.+||++|+|++||.+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            4 GSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             cCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            34455678999999999999999999999999999999664

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.4e-09  Score=71.03  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=33.7

Q ss_pred             cccccccccCcccccCCChhhhhhHHHhhcCCCCCCC
Q 044606           35 LFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQ   71 (413)
Q Consensus        35 ~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~   71 (413)
                      ....++|+|++|+|.|.+.+.|.+||++|++++||.+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             SCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            4456889999999999999999999999999999964

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.87  E-value=1e-09  Score=73.35  Aligned_cols=41  Identities=27%  Similarity=0.255  Sum_probs=36.2

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ...+...++|+|++|+|.|.+...|..|||+|++++||.+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            4 GSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455678999999999999999999999999999999664

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=9.5e-10  Score=73.50  Aligned_cols=41  Identities=24%  Similarity=0.186  Sum_probs=36.1

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      .......++|+|++|+|.|.+.+.|..|||+|++++||.+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            4 GSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             ccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455678999999999999999999999999999999654

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1.1e-09  Score=73.24  Aligned_cols=40  Identities=28%  Similarity=0.216  Sum_probs=35.6

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ..+...++|+|.+|+|.|.+.+.|..|||+|++++||.+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            5 SSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             cccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            3455678899999999999999999999999999999654

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.3e-09  Score=72.75  Aligned_cols=41  Identities=24%  Similarity=0.277  Sum_probs=36.0

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      .......++|+|++|+|.|.+.+.|..||++|+|++||.+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            4 GSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             ccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            34455678999999999999999999999999999999654

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.1e-09  Score=73.06  Aligned_cols=41  Identities=24%  Similarity=0.196  Sum_probs=36.1

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ...+...++|+|++|+|.|.+.+.|..||++|++++||.+.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            4 GSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            34455678999999999999999999999999999999654

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=8.5e-10  Score=73.66  Aligned_cols=42  Identities=26%  Similarity=0.433  Sum_probs=36.8

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            567788889999999999999999999999999998888885

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=4.7e-10  Score=74.24  Aligned_cols=42  Identities=21%  Similarity=0.361  Sum_probs=38.3

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTP  307 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C  307 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            467788999999999999999999999999999999998887

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.86  E-value=1.2e-09  Score=71.38  Aligned_cols=39  Identities=26%  Similarity=0.187  Sum_probs=34.6

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCC
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQ   71 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~   71 (413)
                      ......++|+|++|+|.|...+.|..||++|++++||.+
T Consensus         4 ~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            4 GSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             SCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             ccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            344567889999999999999999999999999999953

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=8.6e-10  Score=72.98  Aligned_cols=42  Identities=19%  Similarity=0.284  Sum_probs=37.9

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      |++.|.++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            566788999999999999999999999999999999998884

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=4.3e-10  Score=75.18  Aligned_cols=45  Identities=9%  Similarity=-0.184  Sum_probs=33.3

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|+++|++++||.|.+|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFY--TNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEES--SHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCC--ChHHHHHHHHHhCCCCCCCCCCC
Confidence            4677777777777777777773  55667777777777777777776

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.5e-09  Score=72.56  Aligned_cols=40  Identities=23%  Similarity=0.179  Sum_probs=35.3

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ..+...++|+|++|+|.|.+...|.+|||+|++++||.+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            5 SSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3445678999999999999999999999999999999654

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=9.8e-10  Score=71.46  Aligned_cols=37  Identities=24%  Similarity=0.215  Sum_probs=33.6

Q ss_pred             cccccccccCcccccCCChhhhhhHHHhhcCCCCCCC
Q 044606           35 LFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQ   71 (413)
Q Consensus        35 ~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~   71 (413)
                      +...++|+|++|+|.|.+...|..||++|++++||.+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4457889999999999999999999999999999953

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.1e-10  Score=74.86  Aligned_cols=43  Identities=28%  Similarity=0.441  Sum_probs=38.8

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      .|++.|.++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3667789999999999999999999999999999999998886

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.3e-09  Score=72.75  Aligned_cols=39  Identities=28%  Similarity=0.320  Sum_probs=35.0

Q ss_pred             ccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           34 SLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        34 ~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      .....++|+|.+|+|.|.+...|.+|||+|++++||.+.
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            445678999999999999999999999999999999654

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.4e-09  Score=72.65  Aligned_cols=40  Identities=25%  Similarity=0.224  Sum_probs=35.8

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ......++|+|++|+|.|.+.+.|.+|||+|++++||.+.
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytm_A            5 SSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS   44 (46)
T ss_dssp             CCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCC
T ss_pred             cCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            3455678999999999999999999999999999999765

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1.1e-09  Score=72.20  Aligned_cols=40  Identities=23%  Similarity=0.179  Sum_probs=35.5

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCC
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQ   71 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~   71 (413)
                      .......++|+|++|+|.|.+...|..||++|+|++||.+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            4 GSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             SSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             ccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            3445567899999999999999999999999999999964

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.85  E-value=2.1e-10  Score=70.59  Aligned_cols=31  Identities=23%  Similarity=0.514  Sum_probs=29.6

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcCCCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHMLNLPI   69 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~   69 (413)
                      ++|+|++|+|.|...+.|.+|||+|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4799999999999999999999999999998

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=2.6e-10  Score=76.32  Aligned_cols=45  Identities=9%  Similarity=-0.125  Sum_probs=32.6

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|+++++|.|..|++.|.  ....|..|+++|++++||.|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFS--QKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEES--SHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccC--chHHHHHHHHHcCCCCCCCCCCC
Confidence            4677777777777777777773  55667777777777777777776

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.3e-09  Score=72.73  Aligned_cols=40  Identities=23%  Similarity=0.342  Sum_probs=35.7

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ..+...++|+|.+|+|.|.+...|.+||++|++++||.+.
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            5 SSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4455678999999999999999999999999999999654

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.4e-09  Score=72.03  Aligned_cols=39  Identities=23%  Similarity=0.055  Sum_probs=34.8

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCC
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQ   71 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~   71 (413)
                      ......++|+|.+|+|.|.+.+.|..||++|++++||.+
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            5 SSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             cccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            345567899999999999999999999999999999954

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.5e-09  Score=72.49  Aligned_cols=40  Identities=25%  Similarity=0.183  Sum_probs=35.7

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ......++|+|++|+|.|.....|..||++|++++||.+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            5 SSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3455678999999999999999999999999999999664

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.7e-09  Score=72.27  Aligned_cols=38  Identities=24%  Similarity=0.222  Sum_probs=34.4

Q ss_pred             cccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           35 LFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        35 ~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      +...++|+|.+|+|.|.+...|..|||+|++++||.+.
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            44568899999999999999999999999999999654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.84  E-value=4.9e-10  Score=86.48  Aligned_cols=43  Identities=19%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             hhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          268 NNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       268 ~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      ...|+++++|.|.+|++.|.....|..|+++|++++||+|..|
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~   59 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQ   59 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchh
Confidence            3457788889999999999999999999888888777776554

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.1e-09  Score=71.56  Aligned_cols=38  Identities=24%  Similarity=0.176  Sum_probs=34.2

Q ss_pred             ccccccccccCcccccCCChhhhhhHHHhhcCCCCCCC
Q 044606           34 SLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQ   71 (413)
Q Consensus        34 ~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~   71 (413)
                      .....++|+|++|+|.|.+...|.+|||+|+|++||.+
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             ccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            44567899999999999999999999999999999953

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.3e-09  Score=72.68  Aligned_cols=40  Identities=25%  Similarity=0.205  Sum_probs=35.7

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ......++|+|++|+|.|.....|..||++|++++||.+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            5 SSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            3455678999999999999999999999999999999664

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=9.3e-10  Score=73.19  Aligned_cols=41  Identities=20%  Similarity=0.344  Sum_probs=36.4

Q ss_pred             hhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          268 NNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       268 ~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      ...|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            45678899999999999999999999999999998888885

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.2e-09  Score=73.12  Aligned_cols=42  Identities=21%  Similarity=0.320  Sum_probs=38.0

Q ss_pred             hhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          268 NNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       268 ~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      .+.|.++++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            456889999999999999999999999999999999999863

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=1.9e-09  Score=70.93  Aligned_cols=38  Identities=18%  Similarity=0.123  Sum_probs=34.3

Q ss_pred             cccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           35 LFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        35 ~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      +...++|+|.+|+|.|.....|..||++|++++||.+.
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            34567899999999999999999999999999999654

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.5e-09  Score=71.79  Aligned_cols=40  Identities=18%  Similarity=0.243  Sum_probs=35.3

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCC
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQ   71 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~   71 (413)
                      .......++|+|++|+|.|.+.+.|..||++|+|++||.+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            4 GSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             ccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            3445567899999999999999999999999999999964

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.4e-09  Score=72.67  Aligned_cols=40  Identities=25%  Similarity=0.155  Sum_probs=35.6

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ......++|+|++|+|.|.....|..||++|++++||.+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            5 SSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            3455678999999999999999999999999999999654

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.4e-09  Score=72.60  Aligned_cols=41  Identities=24%  Similarity=0.229  Sum_probs=36.2

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      .......++|+|.+|+|.|.....|..||++|++++||.+.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            4 GSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             ccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            34455678999999999999999999999999999999764

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.6e-09  Score=72.37  Aligned_cols=40  Identities=28%  Similarity=0.317  Sum_probs=35.7

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ..+...++|+|++|+|.|.+...|..||++|++++||.+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            5 SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             SCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             cCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3455678999999999999999999999999999999654

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.2e-09  Score=73.54  Aligned_cols=44  Identities=23%  Similarity=0.379  Sum_probs=37.2

Q ss_pred             hhhhcCCCCccccC--CccccccChhhhhhhhhhcCCCcccCCCCC
Q 044606          267 FNNKNRSRGKYKCE--TCKKVFKSYQALGGHRASHKKIKFYTPVQE  310 (413)
Q Consensus       267 ~~~~~~~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C  310 (413)
                      +.+.|+++++|.|.  .|++.|.....|..|+++|++++||+|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34567888999998  899999999999999999998888888766

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.83  E-value=6e-10  Score=79.91  Aligned_cols=50  Identities=14%  Similarity=0.226  Sum_probs=45.1

Q ss_pred             HHhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccc
Q 044606          265 KSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQEN  317 (413)
Q Consensus       265 ~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~  317 (413)
                      ..|++.|+++++|.|.+|++.|.....|.   ++|++++||.|..|++.|...
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~   52 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEED   52 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEEC
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccC
Confidence            45788899999999999999999988887   899999999999999999633

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=1.6e-09  Score=71.31  Aligned_cols=41  Identities=17%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             hhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          269 NKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       269 ~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      +.|+++++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            35788999999999999999999999999999999998863

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=4.4e-10  Score=75.11  Aligned_cols=45  Identities=11%  Similarity=-0.212  Sum_probs=31.4

Q ss_pred             hhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|+++|++++||.|..|++.|.  ....|..|+++|++++||+|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFF--QYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEES--SHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhC--CHHHHHHHHHHhCCCCCCCCCCC
Confidence            4667777777777777777773  55566677777777777777766

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.3e-09  Score=72.51  Aligned_cols=39  Identities=26%  Similarity=0.241  Sum_probs=34.9

Q ss_pred             ccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           34 SLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        34 ~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      .+...++|+|++|+|.|.+...|.+|||+|++++||.+.
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            345678899999999999999999999999999999653

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.4e-09  Score=71.83  Aligned_cols=39  Identities=23%  Similarity=0.146  Sum_probs=35.0

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCC
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQ   71 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~   71 (413)
                      ......++|+|++|+|.|.+...|..||++|++++||.+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            5 SSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             CSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             cccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            345567899999999999999999999999999999964

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.4e-09  Score=72.65  Aligned_cols=41  Identities=22%  Similarity=0.215  Sum_probs=36.1

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ...+...++|+|++|+|.|.....|..||++|++++||.+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            4 GSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             cccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455678999999999999999999999999999999654

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.8e-09  Score=72.14  Aligned_cols=41  Identities=27%  Similarity=0.313  Sum_probs=36.1

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ...+...++|+|.+|+|.|.+...|..||++|++++||.+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            4 GSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455678999999999999999999999999999999664

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.6e-09  Score=72.26  Aligned_cols=40  Identities=25%  Similarity=0.235  Sum_probs=35.5

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ......++|+|.+|+|.|.+...|..||++|++++||.+.
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            5 SSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             cCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            3455678899999999999999999999999999999654

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.7e-09  Score=72.22  Aligned_cols=40  Identities=23%  Similarity=0.099  Sum_probs=35.6

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ..+...++|+|++|+|.|.....|.+|||+|++++||.+.
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em8_A            5 SSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS   44 (46)
T ss_dssp             CCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSC
T ss_pred             CCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCC
Confidence            3445678999999999999999999999999999999765

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.6e-09  Score=71.74  Aligned_cols=42  Identities=21%  Similarity=0.306  Sum_probs=37.4

Q ss_pred             HhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCC
Q 044606          266 SFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTP  307 (413)
Q Consensus       266 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C  307 (413)
                      .|++.|+++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            367788899999999999999999999999999999888876

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.82  E-value=2e-09  Score=77.76  Aligned_cols=28  Identities=14%  Similarity=0.360  Sum_probs=24.5

Q ss_pred             ccccccccCcccccCCChhhhhhHHHh-h
Q 044606           36 FVMEKHKCRLCFKNFSNGRALGGHMRS-H   63 (413)
Q Consensus        36 ~~~~~~~C~iC~K~F~~~~~L~~HmR~-H   63 (413)
                      ...++|+|++|+|.|.+...|..||++ |
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~H   34 (66)
T 2drp_A            6 EGEHTYRCKVCSRVYTHISNFCRHYVTSH   34 (66)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             CCCcceECCCCcchhCCHHHHHHHHHHHc
Confidence            456789999999999999999999998 5

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.9e-09  Score=70.00  Aligned_cols=39  Identities=21%  Similarity=0.353  Sum_probs=35.7

Q ss_pred             hhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCC
Q 044606          269 NKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTP  307 (413)
Q Consensus       269 ~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C  307 (413)
                      ..|+++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            357889999999999999999999999999999999887

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=7.9e-10  Score=73.86  Aligned_cols=42  Identities=19%  Similarity=0.297  Sum_probs=38.2

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      |++.|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            667788999999999999999999999999999999998885

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.8e-09  Score=72.06  Aligned_cols=41  Identities=24%  Similarity=0.193  Sum_probs=36.2

Q ss_pred             ccccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           32 RKSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        32 ~~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      .......++|+|++|+|.|.....|..||++|++++||.+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            4 GSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             ccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455678999999999999999999999999999999654

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.81  E-value=2.4e-09  Score=78.95  Aligned_cols=32  Identities=28%  Similarity=0.387  Sum_probs=27.0

Q ss_pred             ccccccccC--cccccCCChhhhhhHHHhhcCCC
Q 044606           36 FVMEKHKCR--LCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        36 ~~~~~~~C~--iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ...++|+|+  .|+|.|.....|..||++|++++
T Consensus        15 ~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~   48 (73)
T 1f2i_G           15 PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQK   48 (73)
T ss_dssp             CCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCC
T ss_pred             CCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCC
Confidence            356789997  49999999999999999998833

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2.1e-09  Score=70.98  Aligned_cols=39  Identities=23%  Similarity=0.214  Sum_probs=34.9

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCC
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQ   71 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~   71 (413)
                      ......++|+|++|+|.|.....|..||++|++++||.+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            5 SSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             cccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            345567899999999999999999999999999999964

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2.5e-09  Score=71.46  Aligned_cols=43  Identities=9%  Similarity=-0.125  Sum_probs=28.4

Q ss_pred             hhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCC
Q 044606          295 HRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPV  339 (413)
Q Consensus       295 H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~  339 (413)
                      |+++|++++||.|..|++.|.  ....|..|+++|++++||.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFR--VSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCS--SHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccC--cHHHHHHHHHhcCCCCCCCCCC
Confidence            566677777777777776663  4556666666677777776653

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.5e-09  Score=71.66  Aligned_cols=39  Identities=21%  Similarity=0.138  Sum_probs=34.9

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCC
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQ   71 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~   71 (413)
                      ..+...++|+|++|+|.|.+.+.|..||++|++++||.+
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            5 SSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             cCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            345567899999999999999999999999999999954

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.7e-09  Score=72.20  Aligned_cols=40  Identities=30%  Similarity=0.278  Sum_probs=35.6

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      ..+...++|+|.+|+|.|.....|..||++|++++||.+.
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3455678999999999999999999999999999999654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.79  E-value=1.8e-09  Score=69.34  Aligned_cols=34  Identities=29%  Similarity=0.549  Sum_probs=31.7

Q ss_pred             cccccccCcccccCCChhhhhhHHHhhcCCCCCC
Q 044606           37 VMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIP   70 (413)
Q Consensus        37 ~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~   70 (413)
                      ..++|+|.+|+|.|...+.|..||++|+|++||.
T Consensus         3 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            3 PPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            3578999999999999999999999999999994

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.1e-09  Score=71.74  Aligned_cols=39  Identities=26%  Similarity=0.233  Sum_probs=35.0

Q ss_pred             ccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           34 SLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        34 ~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      .+...++|+|++|+|.|.+...|..|||+|++++||.+.
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS   44 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344678899999999999999999999999999999765

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=2.1e-09  Score=71.77  Aligned_cols=40  Identities=30%  Similarity=0.284  Sum_probs=35.4

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcC-CCCCCCc
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHML-NLPIPQK   72 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg-~~p~~~~   72 (413)
                      ......++|+|++|+|.|.+...|..||++|++ ++||.+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             cccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            344567899999999999999999999999999 9999654

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.1e-09  Score=71.74  Aligned_cols=44  Identities=14%  Similarity=-0.069  Sum_probs=35.0

Q ss_pred             hhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          295 HRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       295 H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      ++++|+++++|.|..|++.|.  ....|..|+++|++++||.|.+|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFR--YGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEES--SHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccC--ChHHHHHHHHHhCCCCCCCCCCC
Confidence            467788888888888888883  66677888888888888888877

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.78  E-value=1.8e-09  Score=68.36  Aligned_cols=36  Identities=28%  Similarity=0.444  Sum_probs=33.2

Q ss_pred             hcCCCCCCCccccCCcCcccCCchhhcccccccccC
Q 044606          325 ASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       325 h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      |+++|++++||.|++|++.|.+...|..|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            677889999999999999999999999999999864

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=2.6e-09  Score=72.09  Aligned_cols=39  Identities=26%  Similarity=0.267  Sum_probs=35.4

Q ss_pred             ccccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           34 SLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        34 ~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      +....++|+|.+|+|.|.+...|.+|||+|++++||.+.
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSG   44 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCC
Confidence            445678899999999999999999999999999999765

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.73  E-value=5e-09  Score=69.55  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=34.4

Q ss_pred             cccccccccCcccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           35 LFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        35 ~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      +...++|+|.+|+|.|...+.|..|||+|++++||.+.
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~   42 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGP   42 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCc
Confidence            44567999999999999999999999999999999654

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=4.3e-09  Score=66.54  Aligned_cols=34  Identities=21%  Similarity=0.393  Sum_probs=30.8

Q ss_pred             cccccccccCcccccCCChhhhhhHHHhhcCCCC
Q 044606           35 LFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLP   68 (413)
Q Consensus        35 ~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p   68 (413)
                      +...++|+|.+|+|.|.....|..||++|++++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            3456789999999999999999999999999876

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.72  E-value=4.6e-09  Score=65.39  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=29.6

Q ss_pred             cccccccCcccccCCChhhhhhHHHhhcCCCC
Q 044606           37 VMEKHKCRLCFKNFSNGRALGGHMRSHMLNLP   68 (413)
Q Consensus        37 ~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p   68 (413)
                      ..++|+|.+|+|.|...+.|.+|||+|++++|
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            4 GSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            45789999999999999999999999999875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.72  E-value=5e-09  Score=65.36  Aligned_cols=32  Identities=22%  Similarity=0.495  Sum_probs=29.7

Q ss_pred             cccccccCcccccCCChhhhhhHHHhhcCCCC
Q 044606           37 VMEKHKCRLCFKNFSNGRALGGHMRSHMLNLP   68 (413)
Q Consensus        37 ~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p   68 (413)
                      ..++|+|.+|+|.|...+.|.+|||+|++++|
T Consensus         4 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            4 GKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            45789999999999999999999999999875

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.71  E-value=1.5e-09  Score=75.40  Aligned_cols=29  Identities=21%  Similarity=0.531  Sum_probs=15.4

Q ss_pred             CCccccCCcCcccCCchhhcccccccccC
Q 044606          332 KKVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       332 ~kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      ++||.|.+|++.|.+...|..|+++|+++
T Consensus        22 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   50 (54)
T 1yui_A           22 EQPATCPICYAVIRQSRNLRRHLELRHFA   50 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHTTT
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            44555555555555555555555555543

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.71  E-value=7.3e-09  Score=74.73  Aligned_cols=37  Identities=24%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             ccccccccCc--ccccCCChhhhhhHH-HhhcCCCCCCCc
Q 044606           36 FVMEKHKCRL--CFKNFSNGRALGGHM-RSHMLNLPIPQK   72 (413)
Q Consensus        36 ~~~~~~~C~i--C~K~F~~~~~L~~Hm-R~Htg~~p~~~~   72 (413)
                      ...++|+|++  |+|.|...+.|++|| |+|||++||.+.
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            3679999976  999999999999998 799999999654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=5.9e-09  Score=66.84  Aligned_cols=33  Identities=21%  Similarity=0.147  Sum_probs=29.3

Q ss_pred             ccccccccccCc--ccccCCChhhhhhHHHhhcCC
Q 044606           34 SLFVMEKHKCRL--CFKNFSNGRALGGHMRSHMLN   66 (413)
Q Consensus        34 ~~~~~~~~~C~i--C~K~F~~~~~L~~HmR~Htg~   66 (413)
                      +....++|+|++  |+|.|...+.|.+|||+|+|+
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            344568999987  999999999999999999995

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=7.2e-09  Score=75.00  Aligned_cols=31  Identities=19%  Similarity=0.250  Sum_probs=24.9

Q ss_pred             CCccccC-CccccccChhhhhhhhhhcCCCcc
Q 044606          274 RGKYKCE-TCKKVFKSYQALGGHRASHKKIKF  304 (413)
Q Consensus       274 ~~~~~C~-~C~k~F~~~~~L~~H~~~H~~~kp  304 (413)
                      ++||.|. +|++.|.....|..|+++|...++
T Consensus        34 ~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           34 RLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             SSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            4567888 899999888889999888876554

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.68  E-value=6.5e-09  Score=61.67  Aligned_cols=29  Identities=28%  Similarity=0.307  Sum_probs=27.0

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ++|.|++|+|.|...+.|..||++|+|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            47999999999999999999999999864

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.67  E-value=1e-08  Score=60.76  Aligned_cols=29  Identities=28%  Similarity=0.540  Sum_probs=26.9

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ++|+|++|++.|...+.|..||++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            47999999999999999999999999864

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=7.5e-09  Score=69.53  Aligned_cols=45  Identities=9%  Similarity=-0.195  Sum_probs=36.1

Q ss_pred             hhhhhcCCCcccCCC--CCCcccccccchhhhhhcCCCCCCCccccCCc
Q 044606          294 GHRASHKKIKFYTPV--QETELDQENAGASINLASPPLSVKKVHECPVC  340 (413)
Q Consensus       294 ~H~~~H~~~kp~~C~--~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C  340 (413)
                      .|.++|+++++|.|.  .|++.|.  ....|..|+++|++++||+|.+|
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~--~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFS--RSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEES--SHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCCCCccC--CHHHHHHHHHHhCCCCCCCCCCC
Confidence            366788888888887  7888884  56678888888888888888877

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.67  E-value=4.8e-09  Score=72.72  Aligned_cols=44  Identities=16%  Similarity=0.164  Sum_probs=30.0

Q ss_pred             HHHHHhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCccc
Q 044606          262 EEFKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFY  305 (413)
Q Consensus       262 ~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~  305 (413)
                      ..+..|++.|+++++|.|.+|++.|.....|..|+++|++++||
T Consensus        10 ~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A           10 PGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             SCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            34455666677777777777777777777777777777776665

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1.2e-08  Score=64.00  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=29.7

Q ss_pred             cccccccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           35 LFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        35 ~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ....++|+|++|+|.|.+...|..||++|++++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            345678999999999999999999999999964

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=9.1e-09  Score=64.61  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=29.7

Q ss_pred             cccccccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           35 LFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        35 ~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ....++|+|++|+|.|.+...|..|||+|++++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            345678999999999999999999999999864

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.65  E-value=1.1e-08  Score=65.53  Aligned_cols=37  Identities=35%  Similarity=0.619  Sum_probs=33.7

Q ss_pred             cCCCCccccCCccccccChhhhhhhhhhcCCCcccCC
Q 044606          271 NRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTP  307 (413)
Q Consensus       271 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C  307 (413)
                      |+++++|.|.+|++.|.....|..|+++|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4678999999999999999999999999999999875

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=1.1e-08  Score=64.16  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=29.6

Q ss_pred             cccccccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           35 LFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        35 ~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      +...++|+|++|+|.|.+...|.+|||+|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            345678999999999999999999999999864

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.64  E-value=1.1e-08  Score=59.65  Aligned_cols=27  Identities=37%  Similarity=0.586  Sum_probs=24.5

Q ss_pred             ccccCcccccCCChhhhhhHHHhhcCC
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRSHMLN   66 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~Htg~   66 (413)
                      +|+|.+|+|.|.+.+.|..|||+|+|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            589999999999999999999999984

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.64  E-value=1.1e-08  Score=65.02  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=31.0

Q ss_pred             cccccccCc--ccccCCChhhhhhHHHhhcCCCCCC
Q 044606           37 VMEKHKCRL--CFKNFSNGRALGGHMRSHMLNLPIP   70 (413)
Q Consensus        37 ~~~~~~C~i--C~K~F~~~~~L~~HmR~Htg~~p~~   70 (413)
                      ..++|+|.+  |+|.|...+.|.+|||+|++++||+
T Consensus         3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            357899995  9999999999999999999999983

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.64  E-value=1.9e-08  Score=73.90  Aligned_cols=35  Identities=26%  Similarity=0.432  Sum_probs=29.8

Q ss_pred             cccccccccCc--ccccCCChhhhhhHHHhhcCCCCC
Q 044606           35 LFVMEKHKCRL--CFKNFSNGRALGGHMRSHMLNLPI   69 (413)
Q Consensus        35 ~~~~~~~~C~i--C~K~F~~~~~L~~HmR~Htg~~p~   69 (413)
                      ....++|.|.+  |+|.|.....|..||++|++++||
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~   48 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPF   48 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSE
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCc
Confidence            34567899988  999999999999999999986666

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=9.6e-09  Score=64.50  Aligned_cols=33  Identities=21%  Similarity=0.183  Sum_probs=29.5

Q ss_pred             cccccccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           35 LFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        35 ~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ....++|+|.+|+|.|.+.+.|.+|||+|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            345678999999999999999999999999864

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.63  E-value=1.5e-08  Score=60.30  Aligned_cols=30  Identities=13%  Similarity=0.309  Sum_probs=27.6

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcCCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHMLNLP   68 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p   68 (413)
                      ++|+|++|+|.|.+.+.|..||++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            369999999999999999999999999764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.63  E-value=1.5e-08  Score=59.82  Aligned_cols=29  Identities=31%  Similarity=0.615  Sum_probs=27.0

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ++|+|++|++.|.+...|..||++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            47999999999999999999999999864

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.62  E-value=1.2e-08  Score=60.40  Aligned_cols=29  Identities=34%  Similarity=0.509  Sum_probs=27.0

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ++|+|.+|+|.|.....|..|||+|+|++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            47999999999999999999999999964

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.62  E-value=7e-09  Score=70.11  Aligned_cols=37  Identities=16%  Similarity=0.262  Sum_probs=29.9

Q ss_pred             CCCCCCccccCCcCcccCCchhhccccc-ccccCCCCC
Q 044606          328 PLSVKKVHECPVCFRVFSSGQALGGHKR-THVTGLVAS  364 (413)
Q Consensus       328 ~h~g~kp~~C~~C~k~F~~~~~L~~H~r-~H~~~~~~~  364 (413)
                      +|++++||.|.+|+|.|.+...|..|++ +|+++....
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~~   38 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGE   38 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-----
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCCC
Confidence            4788999999999999999999999999 999876553

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.04  E-value=4.4e-09  Score=62.54  Aligned_cols=29  Identities=28%  Similarity=0.520  Sum_probs=26.8

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ++|+|.+|+|.|...+.|..||++|+|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            47999999999999999999999999864

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1.5e-08  Score=63.60  Aligned_cols=33  Identities=24%  Similarity=0.257  Sum_probs=29.7

Q ss_pred             cccccccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           35 LFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        35 ~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ....++|+|++|+|.|.+.+.|..|||+|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            445688999999999999999999999999864

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=7.6e-09  Score=66.33  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             CCCCCCccccCC--cCcccCCchhhcccccccccC
Q 044606          328 PLSVKKVHECPV--CFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       328 ~h~g~kp~~C~~--C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      .++++|||+|++  |+|.|.+.+.|.+|+++|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            467899999986  999999999999999999875

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.60  E-value=1.9e-08  Score=60.79  Aligned_cols=29  Identities=28%  Similarity=0.471  Sum_probs=26.8

Q ss_pred             cccccC--cccccCCChhhhhhHHHhhcCCC
Q 044606           39 EKHKCR--LCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        39 ~~~~C~--iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ++|+|+  +|+|.|...+.|..|||+|+|++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            479998  99999999999999999999964

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.59  E-value=2.5e-08  Score=71.97  Aligned_cols=39  Identities=26%  Similarity=0.234  Sum_probs=35.4

Q ss_pred             cCCCCccccCC--ccccccChhhhhhhh-hhcCCCcccCCCC
Q 044606          271 NRSRGKYKCET--CKKVFKSYQALGGHR-ASHKKIKFYTPVQ  309 (413)
Q Consensus       271 ~~~~~~~~C~~--C~k~F~~~~~L~~H~-~~H~~~kp~~C~~  309 (413)
                      .+++|||+|.+  |+|.|...++|..|+ ++|+++|||.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            57899999976  999999999999997 6899999999854

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.59  E-value=1.3e-08  Score=59.90  Aligned_cols=27  Identities=30%  Similarity=0.464  Sum_probs=25.7

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      ++|+|++|+|.|.+.+.|..|||+|+|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            579999999999999999999999986

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.58  E-value=2.7e-08  Score=62.77  Aligned_cols=34  Identities=26%  Similarity=0.442  Sum_probs=30.2

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCC
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLN   66 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~   66 (413)
                      ......++|+|++|+|.|.....|.+||++|+|+
T Consensus         4 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             STTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            3455678999999999999999999999999984

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.58  E-value=1.8e-08  Score=60.05  Aligned_cols=29  Identities=21%  Similarity=0.433  Sum_probs=27.1

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ++|.|.+|+|.|.....|..||++|+|++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            57999999999999999999999999864

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.58  E-value=1.5e-08  Score=63.04  Aligned_cols=34  Identities=24%  Similarity=0.455  Sum_probs=30.9

Q ss_pred             CCCCCCccccCCcCcccCCchhhcccccccccCC
Q 044606          328 PLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGL  361 (413)
Q Consensus       328 ~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~  361 (413)
                      +|++++||.|.+|++.|.+...|..|+++|+++.
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            4778999999999999999999999999998753

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.00  E-value=6e-09  Score=62.29  Aligned_cols=29  Identities=28%  Similarity=0.445  Sum_probs=27.1

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ++|+|.+|+|.|.+.+.|..||++|+|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            57999999999999999999999999863

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=1e-08  Score=65.04  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=31.6

Q ss_pred             cCCCCCCCccccCCcCcccCCchhhccc-ccccccC
Q 044606          326 SPPLSVKKVHECPVCFRVFSSGQALGGH-KRTHVTG  360 (413)
Q Consensus       326 ~~~h~g~kp~~C~~C~k~F~~~~~L~~H-~r~H~~~  360 (413)
                      +++|++++||+|.+|++.|.+...|..| +++|++.
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            3578899999999999999999999999 9999864

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=2.2e-08  Score=63.19  Aligned_cols=32  Identities=22%  Similarity=0.201  Sum_probs=29.0

Q ss_pred             ccccccccCcccccCCCh-hhhhhHHHhhcCCC
Q 044606           36 FVMEKHKCRLCFKNFSNG-RALGGHMRSHMLNL   67 (413)
Q Consensus        36 ~~~~~~~C~iC~K~F~~~-~~L~~HmR~Htg~~   67 (413)
                      ...++|+|++|+|.|.+. +.|.+||++|++++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            5 SSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            456789999999999999 99999999999864

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.56  E-value=3.5e-09  Score=81.64  Aligned_cols=64  Identities=6%  Similarity=-0.141  Sum_probs=54.2

Q ss_pred             hhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhcccccccccCCC
Q 044606          293 GGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLV  362 (413)
Q Consensus       293 ~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~~  362 (413)
                      ..|.++|++++||.|..|++.|.  ....|..|+++|++++||+|..|    .....|..|+++|.+...
T Consensus        14 ~~~~~~H~~~kpy~C~~C~k~F~--~~~~L~~H~~~Ht~ekp~~C~~~----~~~~~~~~~~~~~~~~~~   77 (88)
T 1x6f_A           14 ILGNGPRLQNSTYQCKHCDSKLQ--STAELTSHLNIHNEEFQKRAKRQ----ERRKQLLSKQKYADGAFA   77 (88)
T ss_dssp             CCCCCSCCCCSCEECSSSCCEES--SHHHHHHHHHHHHHHHHHHCCCC----SCCCCCCCCCCCCCCSSS
T ss_pred             eccccccCCCCCCcCCCCCCEeC--CHHHHHHHHHHhCCCCCcccchh----hhHHHHHhhhcccccccc
Confidence            34567799999999999999994  67789999999999999999765    567889999999987653

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=2.3e-08  Score=62.73  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=30.9

Q ss_pred             CCCCCCCccccCCcCcccCCchhhcccccccccC
Q 044606          327 PPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       327 ~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      +.|++++||.|.+|++.|.+...|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            3578899999999999999999999999999864

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.53  E-value=4e-08  Score=59.75  Aligned_cols=29  Identities=28%  Similarity=0.360  Sum_probs=27.0

Q ss_pred             cccccC--cccccCCChhhhhhHHHhhcCCC
Q 044606           39 EKHKCR--LCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        39 ~~~~C~--iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ++|+|.  +|+|.|...+.|..|||+|+|++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            579999  89999999999999999999964

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.52  E-value=2.9e-08  Score=57.85  Aligned_cols=26  Identities=27%  Similarity=0.510  Sum_probs=24.8

Q ss_pred             cccccCcccccCCChhhhhhHHHhhc
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Ht   64 (413)
                      ++|+|++|||.|.+.+.|..|||+|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHcc
Confidence            57999999999999999999999996

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=1.9e-08  Score=63.53  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             CCCCCCCccccCCcCcccCCc-hhhcccccccccC
Q 044606          327 PPLSVKKVHECPVCFRVFSSG-QALGGHKRTHVTG  360 (413)
Q Consensus       327 ~~h~g~kp~~C~~C~k~F~~~-~~L~~H~r~H~~~  360 (413)
                      ++|++++||.|.+|++.|.+. ..|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            468889999999999999999 9999999999864

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.51  E-value=2.2e-08  Score=58.54  Aligned_cols=26  Identities=27%  Similarity=0.535  Sum_probs=24.7

Q ss_pred             cccccCcccccCCChhhhhhHHHhhc
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Ht   64 (413)
                      ++|+|++|+|.|...+.|.+|||+|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            57999999999999999999999996

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=3.7e-08  Score=62.09  Aligned_cols=36  Identities=19%  Similarity=0.380  Sum_probs=33.0

Q ss_pred             hhcCCCCccccCCccccccChhhhhhhhhhcCCCcc
Q 044606          269 NKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKF  304 (413)
Q Consensus       269 ~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp  304 (413)
                      +.|+++++|.|.+|++.|.....|..|+++|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            457889999999999999999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.50  E-value=4.8e-08  Score=60.17  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=30.2

Q ss_pred             CccccCCccccccChhhhhhhhhhcCCCcccC
Q 044606          275 GKYKCETCKKVFKSYQALGGHRASHKKIKFYT  306 (413)
Q Consensus       275 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~  306 (413)
                      +||.|.+|++.|.....|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            57999999999999999999999999999885

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=2.6e-08  Score=62.46  Aligned_cols=34  Identities=26%  Similarity=0.315  Sum_probs=31.0

Q ss_pred             CCCCCCCccccCCcCcccCCchhhcccccccccC
Q 044606          327 PPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       327 ~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      +.|++++||+|.+|++.|.+...|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            3578899999999999999999999999999864

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=2.6e-08  Score=62.32  Aligned_cols=33  Identities=27%  Similarity=0.304  Sum_probs=30.7

Q ss_pred             CCCCCCccccCCcCcccCCchhhcccccccccC
Q 044606          328 PLSVKKVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       328 ~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      +|++++||.|.+|++.|.+...|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            578899999999999999999999999999864

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.86  E-value=1.7e-08  Score=58.32  Aligned_cols=26  Identities=31%  Similarity=0.562  Sum_probs=24.5

Q ss_pred             cccccCcccccCCChhhhhhHHHhhc
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Ht   64 (413)
                      ++|+|++|||.|...+.|..|||+|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            47999999999999999999999995

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.47  E-value=5.5e-08  Score=57.99  Aligned_cols=29  Identities=31%  Similarity=0.486  Sum_probs=26.6

Q ss_pred             cccccCcccccCCChhhhhhH-HHhhcCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGH-MRSHMLNL   67 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~H-mR~Htg~~   67 (413)
                      ++|+|.+|+|.|.+.+.|..| +++|+|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            479999999999999999999 79999864

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.46  E-value=5.3e-08  Score=61.57  Aligned_cols=31  Identities=26%  Similarity=0.466  Sum_probs=28.2

Q ss_pred             cccccccCc--ccccCCChhhhhhHHHhhcCCC
Q 044606           37 VMEKHKCRL--CFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        37 ~~~~~~C~i--C~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ..++|+|.+  |+|.|...+.|..|||+|+|++
T Consensus         5 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            467899996  9999999999999999999964

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.46  E-value=7e-08  Score=59.82  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=31.5

Q ss_pred             cCCCCccccCCccccccChhhhhhhhhhcCCCcc
Q 044606          271 NRSRGKYKCETCKKVFKSYQALGGHRASHKKIKF  304 (413)
Q Consensus       271 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp  304 (413)
                      |+++++|.|.+|++.|.....|..|+++|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            6788999999999999999999999999998764

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=4e-08  Score=61.44  Aligned_cols=33  Identities=33%  Similarity=0.463  Sum_probs=30.6

Q ss_pred             CCCCCCccccCCcCcccCCchhhcccccccccC
Q 044606          328 PLSVKKVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       328 ~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      .|+++++|.|.+|++.|.+...|..|+++|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            577899999999999999999999999999875

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.41  E-value=7.2e-08  Score=65.01  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=27.5

Q ss_pred             cccccccCcccccCCChhhhhhHHH-hhcCCCCC
Q 044606           37 VMEKHKCRLCFKNFSNGRALGGHMR-SHMLNLPI   69 (413)
Q Consensus        37 ~~~~~~C~iC~K~F~~~~~L~~HmR-~Htg~~p~   69 (413)
                      ..++|+|.+|+|.|.+...|..||| +|+|+.+-
T Consensus         4 ~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            4 RDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             TTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            4678999999999999999999999 99996544

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=2.6e-08  Score=74.29  Aligned_cols=65  Identities=6%  Similarity=-0.075  Sum_probs=55.6

Q ss_pred             HHHhhhhcCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCC
Q 044606          264 FKSFNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKK  333 (413)
Q Consensus       264 ~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~k  333 (413)
                      +..|+..+.+.+++.|..|++.|. ...|..|+ .|.+++||.|..|++.|.   ...|..|+.+|.+++
T Consensus         5 L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~---~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL---VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE---TTGGGTHHHHBTTBS
T ss_pred             HHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc---HHHHHHHHHHccCCc
Confidence            456777889999999999999995 99999999 999999999999999874   366778887777653

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.41  E-value=1.4e-07  Score=68.20  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=30.4

Q ss_pred             cccccccccCcccccCCChhhhhhHHHhhcCCCC
Q 044606           35 LFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNLP   68 (413)
Q Consensus        35 ~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p   68 (413)
                      ....++|+|.+|+|.|.+.+.|.+|||+|+++..
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            4457899999999999999999999999999654

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.40  E-value=5.2e-08  Score=59.48  Aligned_cols=31  Identities=23%  Similarity=0.342  Sum_probs=28.8

Q ss_pred             CccccCCccccccChhhhhhhhhhcCCCccc
Q 044606          275 GKYKCETCKKVFKSYQALGGHRASHKKIKFY  305 (413)
Q Consensus       275 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~  305 (413)
                      +||.|.+|++.|.....|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            5799999999999999999999999998887

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.38  E-value=1.8e-07  Score=67.65  Aligned_cols=36  Identities=22%  Similarity=0.398  Sum_probs=32.2

Q ss_pred             CCCCCCccccCCcCcccCCchhhcccccccccCCCC
Q 044606          328 PLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLVA  363 (413)
Q Consensus       328 ~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~~~  363 (413)
                      .|.++|||+|.+|+|.|.+...|..|+++|+++...
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~   42 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQ   42 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCccc
Confidence            467799999999999999999999999999986543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=6.4e-08  Score=60.58  Aligned_cols=33  Identities=30%  Similarity=0.499  Sum_probs=30.2

Q ss_pred             CCCCCCccccCCcCcccCCchhhcccccccccC
Q 044606          328 PLSVKKVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       328 ~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      .|++++||.|.+|++.|.+...|..|+++|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            467799999999999999999999999999864

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.33  E-value=1.1e-07  Score=63.65  Aligned_cols=37  Identities=19%  Similarity=0.345  Sum_probs=31.3

Q ss_pred             cccccccccccccC--cccccCCChhhhhhHHHhhcCCC
Q 044606           31 KRKSLFVMEKHKCR--LCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        31 ~~~~~~~~~~~~C~--iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      +...+...++|+|.  .|+|.|...+.|.+|||+|+|++
T Consensus         9 ~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            33345567899996  79999999999999999999964

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.32  E-value=1.7e-07  Score=55.26  Aligned_cols=27  Identities=26%  Similarity=0.429  Sum_probs=25.3

Q ss_pred             cccccC--cccccCCChhhhhhHHHhhcC
Q 044606           39 EKHKCR--LCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        39 ~~~~C~--iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      ++|+|.  +|+|.|...+.|..|||+|+|
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            368999  999999999999999999986

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.31  E-value=1.9e-07  Score=59.14  Aligned_cols=35  Identities=17%  Similarity=0.371  Sum_probs=32.2

Q ss_pred             cCCCCccccC--CccccccChhhhhhhhhhcCCCccc
Q 044606          271 NRSRGKYKCE--TCKKVFKSYQALGGHRASHKKIKFY  305 (413)
Q Consensus       271 ~~~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~kp~  305 (413)
                      |+++++|.|.  .|++.|.....|..|+++|++++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4678999999  5999999999999999999999887

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.30  E-value=8e-08  Score=64.39  Aligned_cols=37  Identities=22%  Similarity=0.292  Sum_probs=32.2

Q ss_pred             hhcCCCCCCCccccC--CcCcccCCchhhcccccccccC
Q 044606          324 LASPPLSVKKVHECP--VCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       324 ~h~~~h~g~kp~~C~--~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      .|...|++++||.|.  .|++.|.+...|..|+++|+++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            345568889999995  7999999999999999999875

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.29  E-value=1.2e-07  Score=59.95  Aligned_cols=33  Identities=30%  Similarity=0.470  Sum_probs=29.9

Q ss_pred             CCCCCCccccCC--cCcccCCchhhcccccccccC
Q 044606          328 PLSVKKVHECPV--CFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       328 ~h~g~kp~~C~~--C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      .|++++||.|.+  |++.|.+.+.|..|+++|+++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            377899999995  999999999999999999875

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.27  E-value=1.9e-07  Score=54.70  Aligned_cols=28  Identities=29%  Similarity=0.491  Sum_probs=25.9

Q ss_pred             CCccccCCcCcccCCchhhccccccccc
Q 044606          332 KKVHECPVCFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       332 ~kp~~C~~C~k~F~~~~~L~~H~r~H~~  359 (413)
                      ++||.|.+|++.|.+...|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4799999999999999999999999974

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.25  E-value=1.5e-07  Score=54.81  Aligned_cols=27  Identities=26%  Similarity=0.429  Sum_probs=25.2

Q ss_pred             CCccccCCcCcccCCchhhcccccccc
Q 044606          332 KKVHECPVCFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       332 ~kp~~C~~C~k~F~~~~~L~~H~r~H~  358 (413)
                      ++||.|.+||+.|.+...|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            479999999999999999999999985

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.22  E-value=2e-07  Score=54.12  Aligned_cols=27  Identities=30%  Similarity=0.407  Sum_probs=25.2

Q ss_pred             CCccccCCcCcccCCchhhcccccccc
Q 044606          332 KKVHECPVCFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       332 ~kp~~C~~C~k~F~~~~~L~~H~r~H~  358 (413)
                      ++||.|.+||+.|.+...|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            479999999999999999999999985

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.21  E-value=3.2e-07  Score=54.01  Aligned_cols=28  Identities=25%  Similarity=0.358  Sum_probs=26.1

Q ss_pred             CccccCCcCcccCCchhhcccccccccC
Q 044606          333 KVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       333 kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      +||.|++|++.|.+...|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            5899999999999999999999999864

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=4.4e-07  Score=57.19  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=30.6

Q ss_pred             hhcCCCCccccCCccccccChhhhhhh-hhhcCCC
Q 044606          269 NKNRSRGKYKCETCKKVFKSYQALGGH-RASHKKI  302 (413)
Q Consensus       269 ~~~~~~~~~~C~~C~k~F~~~~~L~~H-~~~H~~~  302 (413)
                      +.|++++||.|.+|++.|.....|..| +++|+++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            357889999999999999999999999 8999874

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.48  E-value=2.2e-07  Score=54.89  Aligned_cols=28  Identities=29%  Similarity=0.546  Sum_probs=25.9

Q ss_pred             CccccCCcCcccCCchhhcccccccccC
Q 044606          333 KVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       333 kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      +||.|.+|++.|.+...|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            5899999999999999999999999864

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.48  E-value=2.2e-07  Score=55.19  Aligned_cols=29  Identities=34%  Similarity=0.436  Sum_probs=26.6

Q ss_pred             CCccccCCcCcccCCchhhcccccccccC
Q 044606          332 KKVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       332 ~kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      ++||.|.+|++.|.+...|..|+++|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            46899999999999999999999999864

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.18  E-value=4.4e-07  Score=52.48  Aligned_cols=27  Identities=33%  Similarity=0.612  Sum_probs=24.0

Q ss_pred             ccccCCcCcccCCchhhcccccccccC
Q 044606          334 VHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       334 p~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      ||.|.+|++.|.+...|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            689999999999999999999999863

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.17  E-value=6.5e-07  Score=56.39  Aligned_cols=32  Identities=22%  Similarity=0.386  Sum_probs=28.4

Q ss_pred             cCCCCccccCCccccccChhhhhhhhhhcCCCcccCCCC
Q 044606          271 NRSRGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQ  309 (413)
Q Consensus       271 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~  309 (413)
                      +.+++||.|.+|+|+|.+.++|..|+       ||.|..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------CeECcC
Confidence            46889999999999999999999998       787753

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.46  E-value=2.4e-07  Score=53.29  Aligned_cols=26  Identities=31%  Similarity=0.465  Sum_probs=24.4

Q ss_pred             CccccCCcCcccCCchhhcccccccc
Q 044606          333 KVHECPVCFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       333 kp~~C~~C~k~F~~~~~L~~H~r~H~  358 (413)
                      |||.|.+||+.|.+...|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999999984

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.14  E-value=6.6e-07  Score=54.13  Aligned_cols=29  Identities=24%  Similarity=0.449  Sum_probs=26.7

Q ss_pred             CCccccC--CcCcccCCchhhcccccccccC
Q 044606          332 KKVHECP--VCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       332 ~kp~~C~--~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      ++||.|.  .|++.|.+...|..|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            4799999  8999999999999999999865

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.14  E-value=4.1e-07  Score=57.33  Aligned_cols=27  Identities=30%  Similarity=0.343  Sum_probs=24.1

Q ss_pred             CCCCCccccCCcCcccCCchhhccccc
Q 044606          329 LSVKKVHECPVCFRVFSSGQALGGHKR  355 (413)
Q Consensus       329 h~g~kp~~C~~C~k~F~~~~~L~~H~r  355 (413)
                      +.|+|||+|++|||+|++.++|.+|+.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCC
Confidence            567999999999999999999999983

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.11  E-value=4.3e-07  Score=53.23  Aligned_cols=28  Identities=32%  Similarity=0.670  Sum_probs=26.1

Q ss_pred             CccccCCcCcccCCchhhcccccccccC
Q 044606          333 KVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       333 kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      +||.|.+|++.|.+...|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            5899999999999999999999999875

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.10  E-value=1.3e-06  Score=51.61  Aligned_cols=30  Identities=23%  Similarity=0.452  Sum_probs=27.4

Q ss_pred             CCccccCCccccccChhhhhhhhhhcCCCc
Q 044606          274 RGKYKCETCKKVFKSYQALGGHRASHKKIK  303 (413)
Q Consensus       274 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  303 (413)
                      +++|.|.+|++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            478999999999999999999999999864

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.07  E-value=1.6e-06  Score=50.80  Aligned_cols=29  Identities=31%  Similarity=0.606  Sum_probs=26.7

Q ss_pred             CccccCCccccccChhhhhhhhhhcCCCc
Q 044606          275 GKYKCETCKKVFKSYQALGGHRASHKKIK  303 (413)
Q Consensus       275 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  303 (413)
                      ++|.|.+|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            47999999999999999999999999864

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.05  E-value=1.3e-06  Score=51.78  Aligned_cols=28  Identities=29%  Similarity=0.541  Sum_probs=25.6

Q ss_pred             CccccCCcCcccCCchhhccc-ccccccC
Q 044606          333 KVHECPVCFRVFSSGQALGGH-KRTHVTG  360 (413)
Q Consensus       333 kp~~C~~C~k~F~~~~~L~~H-~r~H~~~  360 (413)
                      +||.|..|++.|.+...|..| +++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            589999999999999999999 8999864

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.01  E-value=2.7e-06  Score=50.94  Aligned_cols=29  Identities=28%  Similarity=0.532  Sum_probs=26.5

Q ss_pred             CccccC--CccccccChhhhhhhhhhcCCCc
Q 044606          275 GKYKCE--TCKKVFKSYQALGGHRASHKKIK  303 (413)
Q Consensus       275 ~~~~C~--~C~k~F~~~~~L~~H~~~H~~~k  303 (413)
                      +||.|.  .|++.|.....|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            579998  89999999999999999999864

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.00  E-value=1.5e-06  Score=50.88  Aligned_cols=29  Identities=34%  Similarity=0.544  Sum_probs=26.8

Q ss_pred             CccccCCccccccChhhhhhhhhhcCCCc
Q 044606          275 GKYKCETCKKVFKSYQALGGHRASHKKIK  303 (413)
Q Consensus       275 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  303 (413)
                      ++|.|.+|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            57999999999999999999999998864

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.00  E-value=2.5e-06  Score=50.27  Aligned_cols=30  Identities=17%  Similarity=0.289  Sum_probs=27.3

Q ss_pred             CccccCCccccccChhhhhhhhhhcCCCcc
Q 044606          275 GKYKCETCKKVFKSYQALGGHRASHKKIKF  304 (413)
Q Consensus       275 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp  304 (413)
                      ++|.|.+|++.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            479999999999999999999999998753

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.85  E-value=2.7e-06  Score=49.81  Aligned_cols=27  Identities=33%  Similarity=0.546  Sum_probs=25.0

Q ss_pred             CccccC--CcCcccCCchhhccccccccc
Q 044606          333 KVHECP--VCFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       333 kp~~C~--~C~k~F~~~~~L~~H~r~H~~  359 (413)
                      +||.|.  .|++.|.+...|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            589999  999999999999999999974

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.79  E-value=0.00018  Score=58.95  Aligned_cols=82  Identities=21%  Similarity=0.247  Sum_probs=54.2

Q ss_pred             CCccccCCccccccChhhhhhhh--hhcCCC-cccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhh
Q 044606          274 RGKYKCETCKKVFKSYQALGGHR--ASHKKI-KFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQAL  350 (413)
Q Consensus       274 ~~~~~C~~C~k~F~~~~~L~~H~--~~H~~~-kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L  350 (413)
                      .+++.|.+|...|.+...+..|.  +.|... +.|.+..+..............+...+.+.+.|.|.+|++.|.+...|
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~  109 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVA  109 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHH
Confidence            36799999999999999999998  567543 444332110000000000011133446677889999999999999999


Q ss_pred             ccccc
Q 044606          351 GGHKR  355 (413)
Q Consensus       351 ~~H~r  355 (413)
                      ..|..
T Consensus       110 ~~H~~  114 (127)
T 1zu1_A          110 ESHYI  114 (127)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            99975

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.66  E-value=0.00028  Score=56.95  Aligned_cols=32  Identities=31%  Similarity=0.525  Sum_probs=28.6

Q ss_pred             CCCCCCCccccCCcCcccCCchhhcccccccc
Q 044606          327 PPLSVKKVHECPVCFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       327 ~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~  358 (413)
                      ..|+|++||.|..|+|.|.+...|..|+++..
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            45888999999999999999999999998644

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.07  E-value=0.0017  Score=52.30  Aligned_cols=28  Identities=29%  Similarity=0.463  Sum_probs=26.0

Q ss_pred             cccccccCcccccCCChhhhhhHHHhhc
Q 044606           37 VMEKHKCRLCFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        37 ~~~~~~C~iC~K~F~~~~~L~~HmR~Ht   64 (413)
                      +..+|.|.+|+|.|.+...|..|+|+..
T Consensus        47 GekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           47 GGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             CCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            6789999999999999999999999854

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.02  E-value=0.0032  Score=40.93  Aligned_cols=28  Identities=29%  Similarity=0.377  Sum_probs=24.6

Q ss_pred             ccccccCcccccCCChhhhhhHHHhhcC
Q 044606           38 MEKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        38 ~~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      .-+|.|+-|++.|....+|+.||+-==+
T Consensus        10 ~~~~~CPrCn~~f~~~~sLr~HmkycCp   37 (49)
T 2e72_A           10 GGRKICPRCNAQFRVTEALRGHMCYCCP   37 (49)
T ss_dssp             SSCCCCTTTCCCCSSHHHHHHHHHHHCT
T ss_pred             CCceeCCcccccccchHHHHhhhhhcCc
Confidence            4689999999999999999999995444

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=95.55  E-value=0.0058  Score=43.35  Aligned_cols=58  Identities=19%  Similarity=0.239  Sum_probs=43.0

Q ss_pred             cccCC--ccccccChhhhhhhh-hhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccC--CcCcccCCchhhc
Q 044606          277 YKCET--CKKVFKSYQALGGHR-ASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECP--VCFRVFSSGQALG  351 (413)
Q Consensus       277 ~~C~~--C~k~F~~~~~L~~H~-~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~--~C~k~F~~~~~L~  351 (413)
                      +.|..  |++.|.+...|..|+ +.|.+.++-                        ....+|.|.  .|++.+.....|.
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~------------------------~~~~~~~C~W~~C~~~~~~~~~L~   57 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFK------------------------HPMEPLACNWEDCDFLGDDTASIV   57 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCC------------------------CSSCCEECCCSSCCCEESSHHHHH
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccC------------------------CCCCCCEeeCCCCcCCCCChHHHH
Confidence            45554  999999999999998 578875410                        012478886  6888888888999


Q ss_pred             ccccccc
Q 044606          352 GHKRTHV  358 (413)
Q Consensus       352 ~H~r~H~  358 (413)
                      .|+++.+
T Consensus        58 ~Hir~~H   64 (64)
T 1zw8_A           58 NHINAQH   64 (64)
T ss_dssp             HHHHHHC
T ss_pred             hhccccC
Confidence            9988653

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=93.98  E-value=0.016  Score=43.35  Aligned_cols=26  Identities=27%  Similarity=0.423  Sum_probs=22.6

Q ss_pred             cccCcccccCCChhhhhhHHHhhcCCCCC
Q 044606           41 HKCRLCFKNFSNGRALGGHMRSHMLNLPI   69 (413)
Q Consensus        41 ~~C~iC~K~F~~~~~L~~HmR~Htg~~p~   69 (413)
                      -.|-+|||.|.   .|.+|+++|+|..|.
T Consensus        22 iiClecGK~fK---~LkRHL~~~hgltpe   47 (87)
T 2jsp_A           22 IVCLECGGSFK---SLKRHLTTHHSMTPE   47 (87)
T ss_dssp             EECTBTCCEES---BHHHHHHHTTCSCHH
T ss_pred             eEecccchhhH---HHHHHHHHccCCCHH
Confidence            46999999999   699999999897665

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.77  E-value=0.013  Score=38.03  Aligned_cols=26  Identities=31%  Similarity=0.460  Sum_probs=23.2

Q ss_pred             CccccCCcCcccCCchhhcccccccc
Q 044606          333 KVHECPVCFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       333 kp~~C~~C~k~F~~~~~L~~H~r~H~  358 (413)
                      .+|.|+.|++.|.....|+.||+.--
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycC   36 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCC   36 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHC
T ss_pred             CceeCCcccccccchHHHHhhhhhcC
Confidence            58999999999999999999998543

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=92.91  E-value=0.035  Score=33.78  Aligned_cols=24  Identities=21%  Similarity=0.409  Sum_probs=21.8

Q ss_pred             ccccCcccccCCChhhhhhHHHhh
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRSH   63 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~H   63 (413)
                      -|.||+|-|.|.+...|..|-...
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~   28 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAV   28 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhc
Confidence            489999999999999999998763

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=88.89  E-value=0.17  Score=29.28  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=21.0

Q ss_pred             cccccCcccccCCChhhhhhHHH
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMR   61 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR   61 (413)
                      .+|+|++|.-..++..+|++|..
T Consensus         2 ~k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            2 SDFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CCEECTTSSCEESSHHHHHHHHH
T ss_pred             CcccCccccccCcChHHHHHHHH
Confidence            47999999999999999999964

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=84.98  E-value=0.44  Score=40.24  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=22.6

Q ss_pred             ccccCcccccCCChhhhhhHHHhhcC
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      =|+|..||| +-.-.+|..|||.|--
T Consensus       154 FYKCe~CgK-YvDId~~~~Hlk~Hg~  178 (226)
T 2czr_A          154 FYKCEECGK-YVDIENLEAHLREHGI  178 (226)
T ss_dssp             EEECTTTCC-EEEGGGHHHHHHTTTC
T ss_pred             EEehhhcCc-eecHHHHHHHHHHcCc
Confidence            389999999 8888999999999976

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=84.23  E-value=1.1  Score=31.28  Aligned_cols=45  Identities=9%  Similarity=0.189  Sum_probs=36.5

Q ss_pred             cCcCcchHHHHHhh-hhcCCCC------ccccC--CccccccChhhhhhhhhhc
Q 044606          255 MDETDESEEFKSFN-NKNRSRG------KYKCE--TCKKVFKSYQALGGHRASH  299 (413)
Q Consensus       255 ~~~~~~~~~~~~~~-~~~~~~~------~~~C~--~C~k~F~~~~~L~~H~~~H  299 (413)
                      ...+.....+..|+ ..|.+.+      +|.|.  .|++.+.....|..|+++.
T Consensus        10 ~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A           10 PESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            45677888899997 4677665      79998  6999999999999998864

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=83.01  E-value=1.1  Score=37.77  Aligned_cols=56  Identities=13%  Similarity=0.028  Sum_probs=27.1

Q ss_pred             cccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhcccccccccCCC
Q 044606          303 KFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGLV  362 (413)
Q Consensus       303 kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~~  362 (413)
                      ++..|+.|+..+   ....+..|....-..++-.|+.|+..|.. ..|..|+.++.|+..
T Consensus       109 ~~v~C~~C~~~~---~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~  164 (170)
T 3hcs_A          109 ALMDCPQCQRPF---QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALE  164 (170)
T ss_dssp             SEEECTTTCCEE---EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC---
T ss_pred             eeeECCCCChHH---HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhh
Confidence            344455554433   22233334332333455567777666543 456677777766554

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.70  E-value=0.55  Score=34.20  Aligned_cols=28  Identities=32%  Similarity=0.456  Sum_probs=23.1

Q ss_pred             ccccccCcccccCC-------ChhhhhhHHHhhcC
Q 044606           38 MEKHKCRLCFKNFS-------NGRALGGHMRSHML   65 (413)
Q Consensus        38 ~~~~~C~iC~K~F~-------~~~~L~~HmR~Htg   65 (413)
                      ..+=.|.+|+|.|.       .-+.|.+|++.++.
T Consensus        26 ~~~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~   60 (76)
T 2djr_A           26 NQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHR   60 (76)
T ss_dssp             CSCEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTH
T ss_pred             CCEEECCCCCCccCCCCCCCCchHHHHHHHHHHCH
Confidence            45678999999998       35789999988766

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=81.70  E-value=0.57  Score=31.32  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=20.5

Q ss_pred             ccccCcccccCCChhhhhhHHHh
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRS   62 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~   62 (413)
                      +-.|.+|+.+|....+|+-|+=+
T Consensus        13 ~~eC~lC~vkYs~r~slqDHIFs   35 (55)
T 2yrk_A           13 KPECTLCGVKYSARLSIRDHIFS   35 (55)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHHTS
T ss_pred             CccccccCcccccccchhhhhcc
Confidence            45899999999999999999854

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=81.03  E-value=0.7  Score=27.18  Aligned_cols=25  Identities=36%  Similarity=0.720  Sum_probs=21.7

Q ss_pred             ccccCcccccCCChhhhhhHHHhhc
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~Ht   64 (413)
                      +--|.+|.|.++.-..|-.|+|.-+
T Consensus         9 kqhcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A            9 KQHCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3459999999999999999999744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	413
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	6e-10
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	8e-10
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	9e-09

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 52.0 bits (125), Expect = 6e-10
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 333 KVHECPVCFRVFSSGQALGGHKRTH 357
           + + C  C R F S QALGGH   H
Sbjct: 4   RSYTCSFCKREFRSAQALGGHMNVH 28

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 51.6 bits (124), Expect = 8e-10
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 276 KYKCETCKKVFKSYQALGGHRASHKKIK 303
            Y C  CK+ F+S QALGGH   H++ +
Sbjct: 5   SYTCSFCKREFRSAQALGGHMNVHRRDR 32

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.6 bits (116), Expect = 9e-09
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 40 KHKCRLCFKNFSNGRALGGHMRSH 63
           + C  C + F + +ALGGHM  H
Sbjct: 5  SYTCSFCKREFRSAQALGGHMNVH 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	413
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.55
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.34
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.33
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.29
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.27
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.25
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.24
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.21
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.21
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.19
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.16
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.15
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.1
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.09
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.09
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.08
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.07
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.06
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.06
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	99.03
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.03
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.0
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.99
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.94
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.92
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.89
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.88
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.87
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.87
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.86
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.83
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.79
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.77
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.76
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.74
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.67
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.63
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.58
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.57
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.57
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.56
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.56
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.49
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.43
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.43
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.4
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.28
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.25
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.21
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.09
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.02
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.93
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.91
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.85
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.74
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.72
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.69
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.66
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.65
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.6
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.51
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.41
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.39
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.38
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.35
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.33
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.31
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.15
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.05
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.85
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.73
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.61
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.57
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.51
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.5
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.47
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.46
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.29
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.14
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.12
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.08
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.97
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.83
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.65
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.63
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.55
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.3
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.96
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.72
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.55
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.16
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.84
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	93.27
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	93.0
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.98
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	92.86
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.68
d1y0jb1	36	U-shaped transcription factor, different fingers {	92.42
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	91.74
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.57
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	91.35
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	91.24
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.02
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	89.87
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.87
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	87.92
d1y0jb1	36	U-shaped transcription factor, different fingers {	87.47
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	85.94
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	85.24
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	83.98
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	83.53
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	82.3
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	81.82
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	81.41

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.6e-16  Score=106.47  Aligned_cols=53  Identities=28%  Similarity=0.500  Sum_probs=47.1

Q ss_pred             CCccccCCccccccChhhhhhhhhhcCCCcccCCCCCCcccccccchhhhhhcCCCCCCCccccCCcCcccCCchhhccc
Q 044606          274 RGKYKCETCKKVFKSYQALGGHRASHKKIKFYTPVQETELDQENAGASINLASPPLSVKKVHECPVCFRVFSSGQALGGH  353 (413)
Q Consensus       274 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~C~~C~~~f~~~~~~~l~~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H  353 (413)
                      +|||+|. ||++|....+|..|+++|+|                              ++||.|.+||++|.+.+.|..|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~------------------------------ekpy~C~~C~k~F~~~~~L~~H   49 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLG------------------------------LRPYGCGVCGKKFKMKHHLVGH   49 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSC------------------------------CCSEECTTTSCEESSSHHHHHH
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhcccc------------------------------ccCCcCCCcCCEecCHHHHHHH
Confidence            5789994 99999999999999999988                              6678888899999999999999


Q ss_pred             cccc
Q 044606          354 KRTH  357 (413)
Q Consensus       354 ~r~H  357 (413)
                      +++|
T Consensus        50 ~r~H   53 (53)
T d2csha1          50 MKIH   53 (53)
T ss_dssp             HTTT
T ss_pred             HhcC
Confidence            9987

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.34  E-value=1.9e-13  Score=80.20  Aligned_cols=29  Identities=28%  Similarity=0.540  Sum_probs=27.7

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ++|+|++|+|.|...+.|++|||+||||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            58999999999999999999999999985

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.5e-13  Score=86.46  Aligned_cols=37  Identities=24%  Similarity=0.381  Sum_probs=34.9

Q ss_pred             hhcCCCCCCCccccCCcCcccCCchhhcccccccccC
Q 044606          324 LASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       324 ~h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      +|+++|+++|||+|++|||+|.+.++|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4788999999999999999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.8e-13  Score=77.90  Aligned_cols=29  Identities=28%  Similarity=0.516  Sum_probs=27.6

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ++|.|++|||.|.+.+.|.+|||+|||++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            58999999999999999999999999975

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.7e-13  Score=81.23  Aligned_cols=33  Identities=30%  Similarity=0.362  Sum_probs=31.5

Q ss_pred             CCCCCCccccCCcCcccCCchhhcccccccccC
Q 044606          328 PLSVKKVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       328 ~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      +|+|+|||+|.+|||+|.+.++|..|+|+|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            589999999999999999999999999999986

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-12  Score=82.41  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=32.2

Q ss_pred             ccccccCcccccCCChhhhhhHHH-hhcCCCCCCCc
Q 044606           38 MEKHKCRLCFKNFSNGRALGGHMR-SHMLNLPIPQK   72 (413)
Q Consensus        38 ~~~~~C~iC~K~F~~~~~L~~HmR-~Htg~~p~~~~   72 (413)
                      .++|+|.+|||.|+..+.|++||| +|+|++||.+.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            579999999999999999999997 79999999654

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.8e-12  Score=88.51  Aligned_cols=30  Identities=27%  Similarity=0.441  Sum_probs=24.2

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcCCCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHMLNLPI   69 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~   69 (413)
                      ++|+|. |||.|.....|..|+|+|+|++||
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy   31 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPY   31 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHHHHSCCCSE
T ss_pred             cCCCCC-CCCeECCHHHhHHHhhccccccCC
Confidence            578895 999999999999999999884433

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.5e-12  Score=75.28  Aligned_cols=27  Identities=37%  Similarity=0.826  Sum_probs=26.3

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      +||+|++|+|.|...+.|.+|||+|||
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            689999999999999999999999998

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.6e-12  Score=81.11  Aligned_cols=35  Identities=29%  Similarity=0.487  Sum_probs=32.8

Q ss_pred             hcCCCCCCCccccCCcCcccCCchhhccccccccc
Q 044606          325 ASPPLSVKKVHECPVCFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       325 h~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~  359 (413)
                      |.|+|+|+|||+|.+|+|+|+++++|..|+++|..
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            67889999999999999999999999999999964

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.7e-12  Score=80.47  Aligned_cols=35  Identities=20%  Similarity=0.191  Sum_probs=32.4

Q ss_pred             CCCCCCCccccCCcCcccCCchhhcccccccccCC
Q 044606          327 PPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTGL  361 (413)
Q Consensus       327 ~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~  361 (413)
                      |+|+|+|||+|.+|||+|.+.++|..|+++|+++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            57999999999999999999999999999998753

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.6e-12  Score=78.73  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=33.6

Q ss_pred             CCCccccCCccccccChhhhhhhhh-hcCCCcccCCCC
Q 044606          273 SRGKYKCETCKKVFKSYQALGGHRA-SHKKIKFYTPVQ  309 (413)
Q Consensus       273 ~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~kp~~C~~  309 (413)
                      -+|||+|.+|||.|....+|.+|++ +|+|+|||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4689999999999999999999975 799999999863

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=4e-12  Score=77.69  Aligned_cols=32  Identities=22%  Similarity=0.458  Sum_probs=30.4

Q ss_pred             CCCCCccccCCcCcccCCchhhcccccccccC
Q 044606          329 LSVKKVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       329 h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      |+|+|||+|.+|+|.|+++++|.+|+|+|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            78999999999999999999999999999864

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.5e-11  Score=72.15  Aligned_cols=28  Identities=39%  Similarity=0.693  Sum_probs=26.8

Q ss_pred             cccccCc--ccccCCChhhhhhHHHhhcCC
Q 044606           39 EKHKCRL--CFKNFSNGRALGGHMRSHMLN   66 (413)
Q Consensus        39 ~~~~C~i--C~K~F~~~~~L~~HmR~Htg~   66 (413)
                      +||+|++  |+|.|++.+.|++|||+||||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5899999  999999999999999999996

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.5e-11  Score=75.72  Aligned_cols=32  Identities=25%  Similarity=0.319  Sum_probs=30.0

Q ss_pred             cccCc--ccccCCChhhhhhHHHhhcCCCCCCCc
Q 044606           41 HKCRL--CFKNFSNGRALGGHMRSHMLNLPIPQK   72 (413)
Q Consensus        41 ~~C~i--C~K~F~~~~~L~~HmR~Htg~~p~~~~   72 (413)
                      |.|++  |+|+|...+.|++|||+|||++||.+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            78988  999999999999999999999999764

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.2e-11  Score=72.73  Aligned_cols=28  Identities=32%  Similarity=0.518  Sum_probs=26.7

Q ss_pred             cccccCc--ccccCCChhhhhhHHHhhcCC
Q 044606           39 EKHKCRL--CFKNFSNGRALGGHMRSHMLN   66 (413)
Q Consensus        39 ~~~~C~i--C~K~F~~~~~L~~HmR~Htg~   66 (413)
                      +||+|++  |+|+|++.+.|.+|||+||||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5899999  999999999999999999996

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.1e-11  Score=72.35  Aligned_cols=29  Identities=28%  Similarity=0.463  Sum_probs=26.7

Q ss_pred             cccccCc--ccccCCChhhhhhHHHhhcCCC
Q 044606           39 EKHKCRL--CFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        39 ~~~~C~i--C~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      +||+|++  |+|+|++.+.|++|||+||||+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            5899964  9999999999999999999975

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.2e-11  Score=76.37  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=30.2

Q ss_pred             CCCCCCCccccCCcCcccCCchhhcccccccccC
Q 044606          327 PPLSVKKVHECPVCFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       327 ~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      ++|+|+|||+|++|+|.|+++++|++|++.++++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            5799999999999999999999999998765543

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.5e-11  Score=76.11  Aligned_cols=36  Identities=33%  Similarity=0.628  Sum_probs=32.1

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKKI  302 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  302 (413)
                      |+..|++++||+|.+|||+|...++|..|+++|+||
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            677889999999999999999999999999999885

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=7.8e-12  Score=72.24  Aligned_cols=28  Identities=39%  Similarity=0.727  Sum_probs=26.9

Q ss_pred             CCccccCCcCcccCCchhhccccccccc
Q 044606          332 KKVHECPVCFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       332 ~kp~~C~~C~k~F~~~~~L~~H~r~H~~  359 (413)
                      ||||+|++|+|+|+++++|.+|+|+|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999986

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.1e-11  Score=63.89  Aligned_cols=26  Identities=46%  Similarity=0.713  Sum_probs=25.2

Q ss_pred             ccccCcccccCCChhhhhhHHHhhcC
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      +|+|.+|+|.|+.+..|+.|||.|||
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            68999999999999999999999997

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.2e-11  Score=72.02  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=31.3

Q ss_pred             hcCCCCccccCCccccccChhhhhhhhhhcCCC
Q 044606          270 KNRSRGKYKCETCKKVFKSYQALGGHRASHKKI  302 (413)
Q Consensus       270 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  302 (413)
                      +|++++||+|.+||++|...++|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            489999999999999999999999999999986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=6.7e-11  Score=72.14  Aligned_cols=31  Identities=19%  Similarity=0.433  Sum_probs=28.8

Q ss_pred             ccccccccCcccccCCChhhhhhHHHhhcCC
Q 044606           36 FVMEKHKCRLCFKNFSNGRALGGHMRSHMLN   66 (413)
Q Consensus        36 ~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~   66 (413)
                      .+.+||+|.+|+|.|.+.+.|++|||+|+.+
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            4678999999999999999999999999984

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.2e-11  Score=66.91  Aligned_cols=26  Identities=38%  Similarity=0.528  Sum_probs=25.1

Q ss_pred             cccccCcccccCCChhhhhhHHHhhc
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Ht   64 (413)
                      +||+|..|||.|.+.+.|.+|+|+||
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            58999999999999999999999997

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.94  E-value=1.6e-10  Score=67.41  Aligned_cols=29  Identities=31%  Similarity=0.606  Sum_probs=27.7

Q ss_pred             CccccCCccccccChhhhhhhhhhcCCCc
Q 044606          275 GKYKCETCKKVFKSYQALGGHRASHKKIK  303 (413)
Q Consensus       275 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  303 (413)
                      +||.|.+|++.|...+.|.+|+++|+|+|
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            68999999999999999999999999986

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=5.3e-11  Score=66.91  Aligned_cols=26  Identities=35%  Similarity=0.575  Sum_probs=25.0

Q ss_pred             CccccCCcCcccCCchhhcccccccc
Q 044606          333 KVHECPVCFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       333 kp~~C~~C~k~F~~~~~L~~H~r~H~  358 (413)
                      |||+|.+|||+|++.++|..|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999995

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=9.1e-11  Score=76.91  Aligned_cols=39  Identities=26%  Similarity=0.401  Sum_probs=34.2

Q ss_pred             hhhhhcCCCCCCCccccCC--cCcccCCchhhcccccccccC
Q 044606          321 SINLASPPLSVKKVHECPV--CFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       321 ~l~~h~~~h~g~kp~~C~~--C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      .+..|+. |+|+|||.|.+  |+|.|++.++|..|+++|+|+
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            4555664 88999999987  999999999999999999986

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.6e-10  Score=69.67  Aligned_cols=34  Identities=24%  Similarity=0.422  Sum_probs=31.8

Q ss_pred             hhcCCCCccccCCccccccChhhhhhhhhhcCCC
Q 044606          269 NKNRSRGKYKCETCKKVFKSYQALGGHRASHKKI  302 (413)
Q Consensus       269 ~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  302 (413)
                      ++|++++||+|.+||++|...++|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            4699999999999999999999999999999875

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=2.2e-10  Score=66.48  Aligned_cols=27  Identities=30%  Similarity=0.530  Sum_probs=25.9

Q ss_pred             cccccCc--ccccCCChhhhhhHHHhhcC
Q 044606           39 EKHKCRL--CFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        39 ~~~~C~i--C~K~F~~~~~L~~HmR~Htg   65 (413)
                      ++|+|++  |+|+|.+.+.|++|+|+|||
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5899999  99999999999999999998

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.3e-10  Score=65.94  Aligned_cols=29  Identities=31%  Similarity=0.584  Sum_probs=27.6

Q ss_pred             CccccCCccccccChhhhhhhhhhcCCCc
Q 044606          275 GKYKCETCKKVFKSYQALGGHRASHKKIK  303 (413)
Q Consensus       275 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k  303 (413)
                      |||.|.+|+|.|.+.++|.+|+++|+|+|
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            68999999999999999999999999975

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=4.6e-10  Score=69.70  Aligned_cols=35  Identities=20%  Similarity=0.411  Sum_probs=31.4

Q ss_pred             hhhhcCCCCccccCCccccccChhhhhhhhhhcCC
Q 044606          267 FNNKNRSRGKYKCETCKKVFKSYQALGGHRASHKK  301 (413)
Q Consensus       267 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~  301 (413)
                      |.+.|+++|||+|.+|+++|.++++|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            56789999999999999999999999999999975

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=4.4e-10  Score=73.58  Aligned_cols=34  Identities=18%  Similarity=0.440  Sum_probs=31.3

Q ss_pred             ccccccccccCc--ccccCCChhhhhhHHHhhcCCC
Q 044606           34 SLFVMEKHKCRL--CFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        34 ~~~~~~~~~C~i--C~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ....-++|+|.+  |+|+|...+.|.+|||+|||++
T Consensus        12 ~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            366789999998  9999999999999999999975

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=6.5e-10  Score=68.22  Aligned_cols=32  Identities=25%  Similarity=0.445  Sum_probs=30.3

Q ss_pred             cccCC--ccccccChhhhhhhhhhcCCCcccCCC
Q 044606          277 YKCET--CKKVFKSYQALGGHRASHKKIKFYTPV  308 (413)
Q Consensus       277 ~~C~~--C~k~F~~~~~L~~H~~~H~~~kp~~C~  308 (413)
                      |.|.+  |+++|.+..+|++|+++|+|+|||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            78987  999999999999999999999999986

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.2e-09  Score=62.56  Aligned_cols=26  Identities=27%  Similarity=0.590  Sum_probs=24.9

Q ss_pred             cccccCc--ccccCCChhhhhhHHHhhc
Q 044606           39 EKHKCRL--CFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        39 ~~~~C~i--C~K~F~~~~~L~~HmR~Ht   64 (413)
                      +||.|++  |||+|+..+.|++|+|+||
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5899999  9999999999999999997

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=5.6e-10  Score=65.37  Aligned_cols=28  Identities=32%  Similarity=0.600  Sum_probs=26.6

Q ss_pred             CccccCC--cCcccCCchhhcccccccccC
Q 044606          333 KVHECPV--CFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       333 kp~~C~~--C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      |||.|++  |+|+|++.++|++|+|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6999999  999999999999999999985

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.3e-10  Score=65.58  Aligned_cols=28  Identities=32%  Similarity=0.493  Sum_probs=26.5

Q ss_pred             CccccCC--cCcccCCchhhcccccccccC
Q 044606          333 KVHECPV--CFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       333 kp~~C~~--C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      |||.|++  |||+|++.++|++|+|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6999988  999999999999999999985

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=4.7e-09  Score=62.29  Aligned_cols=28  Identities=29%  Similarity=0.416  Sum_probs=26.4

Q ss_pred             cccccCc--ccccCCChhhhhhHHHhhcCC
Q 044606           39 EKHKCRL--CFKNFSNGRALGGHMRSHMLN   66 (413)
Q Consensus        39 ~~~~C~i--C~K~F~~~~~L~~HmR~Htg~   66 (413)
                      ++|.|++  |+|+|+..+.|.+|||+|+.+
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            6899999  999999999999999999974

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=5.4e-09  Score=64.19  Aligned_cols=33  Identities=18%  Similarity=0.410  Sum_probs=28.8

Q ss_pred             hhcCCCCccccCCccccccChhhhhhhhhh-cCC
Q 044606          269 NKNRSRGKYKCETCKKVFKSYQALGGHRAS-HKK  301 (413)
Q Consensus       269 ~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~  301 (413)
                      ++|++++||+|.+|++.|....+|+.|++. |++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            468999999999999999999999999754 543

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=7.1e-09  Score=61.49  Aligned_cols=29  Identities=24%  Similarity=0.464  Sum_probs=26.9

Q ss_pred             CCccccCC--cCcccCCchhhcccccccccC
Q 044606          332 KKVHECPV--CFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       332 ~kp~~C~~--C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      ||||.|.+  |+|.|++..+|.+|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999988  999999999999999999864

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=5.8e-09  Score=55.48  Aligned_cols=26  Identities=38%  Similarity=0.676  Sum_probs=24.6

Q ss_pred             ccccCCcCcccCCchhhccccccccc
Q 044606          334 VHECPVCFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       334 p~~C~~C~k~F~~~~~L~~H~r~H~~  359 (413)
                      |++|++|+|.|+++..|+.|+|.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            68999999999999999999999985

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.2e-08  Score=60.12  Aligned_cols=29  Identities=28%  Similarity=0.513  Sum_probs=26.7

Q ss_pred             CccccCC--ccccccChhhhhhhhhhcCCCc
Q 044606          275 GKYKCET--CKKVFKSYQALGGHRASHKKIK  303 (413)
Q Consensus       275 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~k  303 (413)
                      +||.|++  |+|.|...++|.+|+++|+|+|
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            6899974  9999999999999999999975

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.56  E-value=1.1e-08  Score=61.74  Aligned_cols=30  Identities=33%  Similarity=0.690  Sum_probs=27.6

Q ss_pred             ccccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           38 MEKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        38 ~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      .+.|+|.+|+|.|.+..+|..||+.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            468999999999999999999999998754

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=4e-09  Score=61.09  Aligned_cols=27  Identities=41%  Similarity=0.674  Sum_probs=25.5

Q ss_pred             CccccCC--cCcccCCchhhccccccccc
Q 044606          333 KVHECPV--CFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       333 kp~~C~~--C~k~F~~~~~L~~H~r~H~~  359 (413)
                      |||.|++  |+|+|++.++|.+|+|+|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899988  99999999999999999986

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=8.7e-09  Score=58.94  Aligned_cols=26  Identities=31%  Similarity=0.608  Sum_probs=24.5

Q ss_pred             CccccCC--cCcccCCchhhcccccccc
Q 044606          333 KVHECPV--CFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       333 kp~~C~~--C~k~F~~~~~L~~H~r~H~  358 (413)
                      |||.|+.  |||+|++.++|++|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899988  9999999999999999996

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=6.1e-08  Score=53.14  Aligned_cols=28  Identities=25%  Similarity=0.265  Sum_probs=26.4

Q ss_pred             ccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      +|.|+.||..-...+.|+.|+|+||+++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            5899999999999999999999999974

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.6e-08  Score=56.31  Aligned_cols=31  Identities=29%  Similarity=0.417  Sum_probs=29.4

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcCCCCC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHMLNLPI   69 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg~~p~   69 (413)
                      +.+.|.+|||.|..-..|.+|..+|+||+||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            4578999999999999999999999999998

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=7.9e-08  Score=51.34  Aligned_cols=26  Identities=31%  Similarity=0.445  Sum_probs=24.9

Q ss_pred             ccCcccccCCChhhhhhHHHhhcCCC
Q 044606           42 KCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        42 ~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      +|++|.|.|.....|+.|-|.||||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999975

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=7.4e-08  Score=52.92  Aligned_cols=27  Identities=26%  Similarity=0.576  Sum_probs=25.6

Q ss_pred             CCccccCCcCcccCCchhhcccccccc
Q 044606          332 KKVHECPVCFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       332 ~kp~~C~~C~k~F~~~~~L~~H~r~H~  358 (413)
                      +|||.|.+||+.|++....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999995

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=2e-07  Score=51.01  Aligned_cols=29  Identities=28%  Similarity=0.428  Sum_probs=27.1

Q ss_pred             ccccccCcccccCCChhhhhhHHHhhcCC
Q 044606           38 MEKHKCRLCFKNFSNGRALGGHMRSHMLN   66 (413)
Q Consensus        38 ~~~~~C~iC~K~F~~~~~L~~HmR~Htg~   66 (413)
                      .+.|+|.+|...|.....|..||-+|||+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            36799999999999999999999999995

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=2.4e-07  Score=50.82  Aligned_cols=26  Identities=19%  Similarity=0.554  Sum_probs=24.9

Q ss_pred             cccccCcccccCCChhhhhhHHHhhc
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Ht   64 (413)
                      +||.|.||||+|......++|+++|.
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCcccchhhhhhhcchhhhhhhhhcc
Confidence            68999999999999999999999996

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2.9e-07  Score=51.26  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=26.1

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      ++|.|+||+.+|..+..+.-|.|+|.|
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            689999999999999999999999998

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7.2e-07  Score=50.84  Aligned_cols=33  Identities=36%  Similarity=0.662  Sum_probs=29.9

Q ss_pred             CCccccCCccccccChhhhhhhhhhcCCCcccC
Q 044606          274 RGKYKCETCKKVFKSYQALGGHRASHKKIKFYT  306 (413)
Q Consensus       274 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~kp~~  306 (413)
                      ++...|..|||.|.....|.+|..+|+++|||.
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            456789999999999999999999999999983

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=8.4e-07  Score=48.25  Aligned_cols=27  Identities=33%  Similarity=0.508  Sum_probs=26.1

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      ++|+|.+|...-.+.+.|..|+|+|||
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            689999999999999999999999998

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.8e-06  Score=48.07  Aligned_cols=27  Identities=22%  Similarity=0.517  Sum_probs=25.0

Q ss_pred             cccccCc--ccccCCChhhhhhHHHhhcC
Q 044606           39 EKHKCRL--CFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        39 ~~~~C~i--C~K~F~~~~~L~~HmR~Htg   65 (413)
                      ++|.|.+  |+|+++..++|..||++|+|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5799999  99999999999999999876

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=6.5e-07  Score=49.83  Aligned_cols=30  Identities=30%  Similarity=0.503  Sum_probs=27.7

Q ss_pred             CCccccCCcCcccCCchhhcccccccccCC
Q 044606          332 KKVHECPVCFRVFSSGQALGGHKRTHVTGL  361 (413)
Q Consensus       332 ~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~  361 (413)
                      +|||.|++|+..|.++.-+..|.|.|.|..
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~v   30 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSV   30 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCcc
Confidence            589999999999999999999999998754

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.1e-06  Score=46.42  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=25.4

Q ss_pred             ccccCcccccCCChhhhhhHHHhhcCC
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRSHMLN   66 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~Htg~   66 (413)
                      -|.|..|||.|...+-|++|...||||
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            478999999999999999999999995

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=3.7e-06  Score=45.41  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=25.1

Q ss_pred             ccccCCccccccChhhhhhhhhhcCCC
Q 044606          276 KYKCETCKKVFKSYQALGGHRASHKKI  302 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~H~~~  302 (413)
                      .+.|..|||.|...+.|++|+.+|+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            478999999999999999999999985

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.74  E-value=7.5e-06  Score=42.85  Aligned_cols=24  Identities=42%  Similarity=0.714  Sum_probs=23.1

Q ss_pred             cccCcccccCCChhhhhhHHHhhc
Q 044606           41 HKCRLCFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        41 ~~C~iC~K~F~~~~~L~~HmR~Ht   64 (413)
                      |+|.+|.+.|-.+++|.+|.|.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            799999999999999999999995

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.72  E-value=4.3e-06  Score=50.17  Aligned_cols=30  Identities=40%  Similarity=0.669  Sum_probs=27.1

Q ss_pred             CCccccCCcCcccCCchhhcccccccccCC
Q 044606          332 KKVHECPVCFRVFSSGQALGGHKRTHVTGL  361 (413)
Q Consensus       332 ~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~  361 (413)
                      .+.|+|.+|+|.|.+.++|..||+.|..+.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            467999999999999999999999997654

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.69  E-value=5.5e-06  Score=43.38  Aligned_cols=24  Identities=38%  Similarity=0.689  Sum_probs=22.9

Q ss_pred             cccCCcCcccCCchhhcccccccc
Q 044606          335 HECPVCFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       335 ~~C~~C~k~F~~~~~L~~H~r~H~  358 (413)
                      |+|..|.++|..++.|.+|+|.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999995

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=9.5e-06  Score=43.66  Aligned_cols=28  Identities=25%  Similarity=0.460  Sum_probs=26.0

Q ss_pred             ccccccCcccccCCChhhhhhHHHhhcC
Q 044606           38 MEKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        38 ~~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      +++|+|..|...-...++|..|+|+|..
T Consensus         1 vkp~kck~cdyaaadsssl~kh~rihs~   28 (28)
T d2dmda1           1 VKPYKCKTCDYAAADSSSLNKHLRIHSD   28 (28)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHSCC
T ss_pred             CCCcccccccchhcchhhHhhhhhcccC
Confidence            5799999999999999999999999963

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.1e-05  Score=43.71  Aligned_cols=29  Identities=24%  Similarity=0.389  Sum_probs=25.4

Q ss_pred             CCccccCCccccccChhhhhhhhhhcCCC
Q 044606          274 RGKYKCETCKKVFKSYQALGGHRASHKKI  302 (413)
Q Consensus       274 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  302 (413)
                      ++||+|..|...-...+.|..|+|.|+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            47899999999989999999999999873

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=5.6e-06  Score=44.59  Aligned_cols=26  Identities=27%  Similarity=0.436  Sum_probs=24.7

Q ss_pred             CccccCCcCcccCCchhhcccccccc
Q 044606          333 KVHECPVCFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       333 kp~~C~~C~k~F~~~~~L~~H~r~H~  358 (413)
                      |||+|..|...-...++|++|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999995

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=8.6e-06  Score=45.26  Aligned_cols=27  Identities=22%  Similarity=0.410  Sum_probs=24.3

Q ss_pred             CccccCC--cCcccCCchhhccccccccc
Q 044606          333 KVHECPV--CFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       333 kp~~C~~--C~k~F~~~~~L~~H~r~H~~  359 (413)
                      |||.|.+  |+|++...++|++|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6889987  99999999999999998765

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=3.3e-05  Score=41.04  Aligned_cols=26  Identities=38%  Similarity=0.517  Sum_probs=24.5

Q ss_pred             ccCCccccccChhhhhhhhhhcCCCc
Q 044606          278 KCETCKKVFKSYQALGGHRASHKKIK  303 (413)
Q Consensus       278 ~C~~C~k~F~~~~~L~~H~~~H~~~k  303 (413)
                      +|+.|.|+|.++..|+.|-|.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999975

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=2.6e-05  Score=46.92  Aligned_cols=26  Identities=23%  Similarity=0.477  Sum_probs=23.2

Q ss_pred             cccccccCcccccCCChhhhhhHHHh
Q 044606           37 VMEKHKCRLCFKNFSNGRALGGHMRS   62 (413)
Q Consensus        37 ~~~~~~C~iC~K~F~~~~~L~~HmR~   62 (413)
                      +.+||.|.+|+|+|.|..+..+|.-.
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhhh
Confidence            46899999999999999999999744

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=4.7e-05  Score=41.49  Aligned_cols=28  Identities=32%  Similarity=0.552  Sum_probs=25.7

Q ss_pred             ccccCCccccccChhhhhhhhhhcCCCc
Q 044606          276 KYKCETCKKVFKSYQALGGHRASHKKIK  303 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k  303 (413)
                      .|.|.+||......+.|+.|+|+|++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            3899999999999999999999999874

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=2.4e-05  Score=47.07  Aligned_cols=26  Identities=23%  Similarity=0.379  Sum_probs=23.7

Q ss_pred             CCCCccccCCcCcccCCchhhccccc
Q 044606          330 SVKKVHECPVCFRVFSSGQALGGHKR  355 (413)
Q Consensus       330 ~g~kp~~C~~C~k~F~~~~~L~~H~r  355 (413)
                      +|-|||.|.+|+|.|.+..++.+|.-
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46899999999999999999999964

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=3.7e-05  Score=43.03  Aligned_cols=28  Identities=32%  Similarity=0.507  Sum_probs=25.5

Q ss_pred             cccccCc--ccccCCChhhhhhHH-HhhcCC
Q 044606           39 EKHKCRL--CFKNFSNGRALGGHM-RSHMLN   66 (413)
Q Consensus        39 ~~~~C~i--C~K~F~~~~~L~~Hm-R~Htg~   66 (413)
                      +||.|.+  |.|.|+|.+.-..|. |+|..+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            5899999  999999999999997 999763

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.31  E-value=4.6e-05  Score=41.40  Aligned_cols=26  Identities=31%  Similarity=0.405  Sum_probs=23.9

Q ss_pred             cccccCc--ccccCCChhhhhhHHHhhc
Q 044606           39 EKHKCRL--CFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        39 ~~~~C~i--C~K~F~~~~~L~~HmR~Ht   64 (413)
                      ++|+|+.  |+|+|+..+.|++|-++|.
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvha   29 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVHA   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhccC
Confidence            6899986  9999999999999999984

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=5e-05  Score=42.49  Aligned_cols=27  Identities=33%  Similarity=0.564  Sum_probs=24.1

Q ss_pred             CccccCC--cCcccCCchhhcccc-ccccc
Q 044606          333 KVHECPV--CFRVFSSGQALGGHK-RTHVT  359 (413)
Q Consensus       333 kp~~C~~--C~k~F~~~~~L~~H~-r~H~~  359 (413)
                      |||.|.+  |.|.|+..+.-.+|+ |+|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            6899987  999999999999997 88864

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.05  E-value=4.7e-05  Score=41.36  Aligned_cols=25  Identities=36%  Similarity=0.603  Sum_probs=22.7

Q ss_pred             CccccCC--cCcccCCchhhccccccc
Q 044606          333 KVHECPV--CFRVFSSGQALGGHKRTH  357 (413)
Q Consensus       333 kp~~C~~--C~k~F~~~~~L~~H~r~H  357 (413)
                      .||+|+.  |+|.|+..+-|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4888876  999999999999999987

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.85  E-value=0.00017  Score=40.33  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=22.5

Q ss_pred             ccccCCcCcccCCchhhccccc-cccc
Q 044606          334 VHECPVCFRVFSSGQALGGHKR-THVT  359 (413)
Q Consensus       334 p~~C~~C~k~F~~~~~L~~H~r-~H~~  359 (413)
                      ||.|.+|++.|+++.-|.+|+. .|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            7999999999999999999965 5544

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00032  Score=40.63  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=20.5

Q ss_pred             cCcccccCCChhhhhhHHHhhcCC
Q 044606           43 CRLCFKNFSNGRALGGHMRSHMLN   66 (413)
Q Consensus        43 C~iC~K~F~~~~~L~~HmR~Htg~   66 (413)
                      |+-=+|-|.....|..|||+||||
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            444567799999999999999996

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.00054  Score=37.14  Aligned_cols=29  Identities=24%  Similarity=0.495  Sum_probs=26.4

Q ss_pred             CCccccCCccccccChhhhhhhhhhcCCC
Q 044606          274 RGKYKCETCKKVFKSYQALGGHRASHKKI  302 (413)
Q Consensus       274 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  302 (413)
                      +..|.|..|..+|...-.|..||.+|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            35699999999999999999999999985

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.57  E-value=0.00034  Score=38.10  Aligned_cols=28  Identities=29%  Similarity=0.572  Sum_probs=25.2

Q ss_pred             CccccCC--ccccccChhhhhhhhhhcCCC
Q 044606          275 GKYKCET--CKKVFKSYQALGGHRASHKKI  302 (413)
Q Consensus       275 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  302 (413)
                      +||.|..  |.|.|.+...|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5788886  999999999999999999985

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00058  Score=42.41  Aligned_cols=27  Identities=30%  Similarity=0.460  Sum_probs=24.3

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      .-|.|.+|+|.|+....|++|---|--
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcCc
Confidence            347899999999999999999999865

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.50  E-value=0.00022  Score=38.82  Aligned_cols=28  Identities=32%  Similarity=0.428  Sum_probs=24.6

Q ss_pred             CccccCC--cCcccCCchhhcccccccccC
Q 044606          333 KVHECPV--CFRVFSSGQALGGHKRTHVTG  360 (413)
Q Consensus       333 kp~~C~~--C~k~F~~~~~L~~H~r~H~~~  360 (413)
                      |||.|..  |.|.|.+...|.+|.-+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5788865  999999999999999999875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00025  Score=38.55  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=22.1

Q ss_pred             ccccCCcCcccCCchhhccccccc
Q 044606          334 VHECPVCFRVFSSGQALGGHKRTH  357 (413)
Q Consensus       334 p~~C~~C~k~F~~~~~L~~H~r~H  357 (413)
                      ||.|..|.-.|.++.+|.+||+.-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            789999999999999999999864

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00085  Score=36.60  Aligned_cols=27  Identities=26%  Similarity=0.471  Sum_probs=23.2

Q ss_pred             CccccCCccccccChhhhhhhhhh-cCC
Q 044606          275 GKYKCETCKKVFKSYQALGGHRAS-HKK  301 (413)
Q Consensus       275 ~~~~C~~C~k~F~~~~~L~~H~~~-H~~  301 (413)
                      +||.|..|.......++|+.|+++ |..
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            589999999999999999999887 443

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.29  E-value=0.00086  Score=37.38  Aligned_cols=26  Identities=27%  Similarity=0.547  Sum_probs=22.4

Q ss_pred             ccccCCccccccChhhhhhhh-hhcCC
Q 044606          276 KYKCETCKKVFKSYQALGGHR-ASHKK  301 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~-~~H~~  301 (413)
                      ||.|.+|++.|....-|.+|+ +.|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            689999999999999999995 45765

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.00046  Score=37.66  Aligned_cols=27  Identities=22%  Similarity=0.315  Sum_probs=23.8

Q ss_pred             CccccCCcCcccCCchhhccccccccc
Q 044606          333 KVHECPVCFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       333 kp~~C~~C~k~F~~~~~L~~H~r~H~~  359 (413)
                      |||.|..|...-...++|+.|+++.++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            689999999999999999999987654

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0013  Score=35.65  Aligned_cols=25  Identities=32%  Similarity=0.557  Sum_probs=22.3

Q ss_pred             ccccCCccccccChhhhhhhhhhcC
Q 044606          276 KYKCETCKKVFKSYQALGGHRASHK  300 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~H~  300 (413)
                      ||.|..|.-.|.++.+|..||++-.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKa   25 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKA   25 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CcccceeeeeEeeccchhHhhhhhh
Confidence            6899999999999999999997643

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0012  Score=35.36  Aligned_cols=24  Identities=29%  Similarity=0.542  Sum_probs=22.4

Q ss_pred             cccccCcccccCCChhhhhhHHHh
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRS   62 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~   62 (413)
                      .+|+||.|+-....++.|..|||-
T Consensus         1 ak~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           1 AKFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCccCCcchhheeehhhhhHHhhh
Confidence            479999999999999999999985

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.08  E-value=0.0011  Score=34.43  Aligned_cols=23  Identities=30%  Similarity=0.573  Sum_probs=21.3

Q ss_pred             ccccCcccccCCChhhhhhHHHh
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRS   62 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~   62 (413)
                      +|+|.-|...|..+..|+.||-.
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            79999999999999999999953

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.97  E-value=0.0014  Score=34.15  Aligned_cols=22  Identities=27%  Similarity=0.760  Sum_probs=20.7

Q ss_pred             cccCcccccCCChhhhhhHHHh
Q 044606           41 HKCRLCFKNFSNGRALGGHMRS   62 (413)
Q Consensus        41 ~~C~iC~K~F~~~~~L~~HmR~   62 (413)
                      |.|++|.|.|+.+..+..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999999886

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.00073  Score=36.80  Aligned_cols=27  Identities=15%  Similarity=0.224  Sum_probs=23.2

Q ss_pred             CccccCCcCcccCCchhhccccccccc
Q 044606          333 KVHECPVCFRVFSSGQALGGHKRTHVT  359 (413)
Q Consensus       333 kp~~C~~C~k~F~~~~~L~~H~r~H~~  359 (413)
                      +||+|..|.---.+.++|.+|++.-++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            589999999888999999999876554

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.65  E-value=0.0027  Score=35.02  Aligned_cols=29  Identities=21%  Similarity=0.416  Sum_probs=25.8

Q ss_pred             ccccccC--cccccCCChhhhhhHHHhhcCC
Q 044606           38 MEKHKCR--LCFKNFSNGRALGGHMRSHMLN   66 (413)
Q Consensus        38 ~~~~~C~--iC~K~F~~~~~L~~HmR~Htg~   66 (413)
                      |++|-|.  -|+-.|...+-|+.|+=.||||
T Consensus         1 ~k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           1 MKRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CCceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            5678885  4999999999999999999995

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0011  Score=39.08  Aligned_cols=28  Identities=29%  Similarity=0.407  Sum_probs=24.6

Q ss_pred             CCCccccC--CcCcccCCchhhcccccccc
Q 044606          331 VKKVHECP--VCFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       331 g~kp~~C~--~C~k~F~~~~~L~~H~r~H~  358 (413)
                      .+|||.|.  -|+.+|.+...|..|.+.|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            37899995  49999999999999998885

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.55  E-value=0.0013  Score=34.12  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             ccccCCcCcccCCchhhccccc
Q 044606          334 VHECPVCFRVFSSGQALGGHKR  355 (413)
Q Consensus       334 p~~C~~C~k~F~~~~~L~~H~r  355 (413)
                      ||+|..|...|.++..|..||.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999974

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0042  Score=33.25  Aligned_cols=26  Identities=35%  Similarity=0.401  Sum_probs=23.6

Q ss_pred             ccccCcccccCCChhhhhhHHHhhcC
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      +-+|+-|..+-+++.+|+.|-|+|-.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            56899999999999999999999953

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.96  E-value=0.0033  Score=33.45  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=19.3

Q ss_pred             ccccCCcCcccCCchhhccccc
Q 044606          334 VHECPVCFRVFSSGQALGGHKR  355 (413)
Q Consensus       334 p~~C~~C~k~F~~~~~L~~H~r  355 (413)
                      ||+|..|||.|-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            7899999999999999988853

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0037  Score=33.48  Aligned_cols=25  Identities=36%  Similarity=0.484  Sum_probs=23.0

Q ss_pred             ccccCCcCcccCCchhhcccccccc
Q 044606          334 VHECPVCFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       334 p~~C~~C~k~F~~~~~L~~H~r~H~  358 (413)
                      |-+|+.|..+.+++..|+.|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5689999999999999999999995

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.0086  Score=32.46  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=24.0

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      ++|+|.+|.-.-.+.+.|..||+.-+|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            589999999999999999999987544

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.16  E-value=0.0039  Score=32.46  Aligned_cols=22  Identities=27%  Similarity=0.791  Sum_probs=20.4

Q ss_pred             cccCCcCcccCCchhhcccccc
Q 044606          335 HECPVCFRVFSSGQALGGHKRT  356 (413)
Q Consensus       335 ~~C~~C~k~F~~~~~L~~H~r~  356 (413)
                      |.|+.|-|.|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999999875

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.84  E-value=0.014  Score=30.91  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=19.0

Q ss_pred             ccccCCccccccChhhhhhhhh
Q 044606          276 KYKCETCKKVFKSYQALGGHRA  297 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~  297 (413)
                      ||+|..|||.+-.+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6889999999999999988854

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.013  Score=39.92  Aligned_cols=26  Identities=31%  Similarity=0.529  Sum_probs=24.2

Q ss_pred             cccccccCcccccCCChhhhhhHHHh
Q 044606           37 VMEKHKCRLCFKNFSNGRALGGHMRS   62 (413)
Q Consensus        37 ~~~~~~C~iC~K~F~~~~~L~~HmR~   62 (413)
                      ++-+|-|-+|.|.|.+...|+.|+++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            56779999999999999999999987

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.022  Score=33.42  Aligned_cols=28  Identities=21%  Similarity=0.539  Sum_probs=23.2

Q ss_pred             CCCccccCC--ccccccChhhhhhhhhhcC
Q 044606          273 SRGKYKCET--CKKVFKSYQALGGHRASHK  300 (413)
Q Consensus       273 ~~~~~~C~~--C~k~F~~~~~L~~H~~~H~  300 (413)
                      .+|||.|..  |+..|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            468999965  9999999999999987774

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.021  Score=32.33  Aligned_cols=26  Identities=19%  Similarity=0.517  Sum_probs=23.3

Q ss_pred             ccccCCccccccChhhhhhhhhhcCC
Q 044606          276 KYKCETCKKVFKSYQALGGHRASHKK  301 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~H~~  301 (413)
                      .|.|..|||+|.....+.+|.-..+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            48999999999999999999877666

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.021  Score=30.58  Aligned_cols=20  Identities=30%  Similarity=0.527  Sum_probs=18.4

Q ss_pred             cccccCCChhhhhhHHHhhc
Q 044606           45 LCFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        45 iC~K~F~~~~~L~~HmR~Ht   64 (413)
                      =|.|.|...+++..|+-+|-
T Consensus         8 gC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGGS
T ss_pred             cHHHHhhchHHHHHHhhccC
Confidence            49999999999999999984

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.0094  Score=36.84  Aligned_cols=26  Identities=27%  Similarity=0.572  Sum_probs=23.4

Q ss_pred             CccccCCcCcccCCchhhcccccccc
Q 044606          333 KVHECPVCFRVFSSGQALGGHKRTHV  358 (413)
Q Consensus       333 kp~~C~~C~k~F~~~~~L~~H~r~H~  358 (413)
                      -.|.|..|||.|.....|+.|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            36899999999999999999998884

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.42  E-value=0.037  Score=31.00  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.5

Q ss_pred             cccccccCcccccCCChhhhhhHH
Q 044606           37 VMEKHKCRLCFKNFSNGRALGGHM   60 (413)
Q Consensus        37 ~~~~~~C~iC~K~F~~~~~L~~Hm   60 (413)
                      .-.+|.|+-||-+|+..++|..|.
T Consensus         5 kparf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCBCTTTCCBCSCHHHHHHHT
T ss_pred             cccceeccccceeecChhHHHhhh
Confidence            356899999999999999999985

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.028  Score=32.20  Aligned_cols=26  Identities=27%  Similarity=0.418  Sum_probs=21.0

Q ss_pred             cccCC--c---cccccChhhhhhhhhhcCCC
Q 044606          277 YKCET--C---KKVFKSYQALGGHRASHKKI  302 (413)
Q Consensus       277 ~~C~~--C---~k~F~~~~~L~~H~~~H~~~  302 (413)
                      |.|..  |   ++.|.....|..|+|+||||
T Consensus         3 y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           3 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             eEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            55543  5   46799999999999999985

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.57  E-value=0.025  Score=29.80  Aligned_cols=24  Identities=42%  Similarity=0.711  Sum_probs=21.0

Q ss_pred             cccCC--ccccccChhhhhhhhhhcC
Q 044606          277 YKCET--CKKVFKSYQALGGHRASHK  300 (413)
Q Consensus       277 ~~C~~--C~k~F~~~~~L~~H~~~H~  300 (413)
                      |.|..  |+|.|.....|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            67765  9999999999999998886

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.045  Score=30.96  Aligned_cols=27  Identities=19%  Similarity=0.341  Sum_probs=24.3

Q ss_pred             cccccCcccccCCChhhhhhHHHhhcC
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      ..|.|.-|||.|+.+..+.+|--.-+|
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCC
Confidence            358899999999999999999888887

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.24  E-value=0.065  Score=32.86  Aligned_cols=35  Identities=14%  Similarity=0.328  Sum_probs=28.2

Q ss_pred             cccccccccccCcccccCCChhhhhhHHHhhcCCC
Q 044606           33 KSLFVMEKHKCRLCFKNFSNGRALGGHMRSHMLNL   67 (413)
Q Consensus        33 ~~~~~~~~~~C~iC~K~F~~~~~L~~HmR~Htg~~   67 (413)
                      ....+-++-+|+||+-...+...|.+|+-.-+-.+
T Consensus        17 srs~s~qpatcpic~avirqsrnlrrhlel~hf~k   51 (54)
T d1yuja_          17 SRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             TTTTTSCCEECTTTCCEESSHHHHHHHHHHHTSCS
T ss_pred             ccccccCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            34456789999999999999999999997644433

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.02  E-value=0.067  Score=28.14  Aligned_cols=24  Identities=33%  Similarity=0.418  Sum_probs=20.7

Q ss_pred             cccC--cccccCCChhhhhhHHHhhc
Q 044606           41 HKCR--LCFKNFSNGRALGGHMRSHM   64 (413)
Q Consensus        41 ~~C~--iC~K~F~~~~~L~~HmR~Ht   64 (413)
                      |.|.  -|+|.|..-..|+.|.-+||
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            4454  49999999999999999997

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.87  E-value=0.031  Score=29.70  Aligned_cols=24  Identities=33%  Similarity=0.609  Sum_probs=21.3

Q ss_pred             ccccCCcCcccCCchhhccccccc
Q 044606          334 VHECPVCFRVFSSGQALGGHKRTH  357 (413)
Q Consensus       334 p~~C~~C~k~F~~~~~L~~H~r~H  357 (413)
                      .|.|+.|+-...+++.|..|++.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            489999999999999999998753

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.87  E-value=0.055  Score=29.65  Aligned_cols=28  Identities=21%  Similarity=0.468  Sum_probs=24.8

Q ss_pred             CccccCC--ccccccChhhhhhhhhhcCCC
Q 044606          275 GKYKCET--CKKVFKSYQALGGHRASHKKI  302 (413)
Q Consensus       275 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  302 (413)
                      +.|.|..  |+..|.....|..|+-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            5688886  999999999999999999985

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.064  Score=28.60  Aligned_cols=18  Identities=33%  Similarity=0.696  Sum_probs=17.0

Q ss_pred             cCcccCCchhhccccccc
Q 044606          340 CFRVFSSGQALGGHKRTH  357 (413)
Q Consensus       340 C~k~F~~~~~L~~H~r~H  357 (413)
                      |+|-|...+++++|+-+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            999999999999999887

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.47  E-value=0.082  Score=29.56  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=20.7

Q ss_pred             CccccCCcCcccCCchhhcccccc
Q 044606          333 KVHECPVCFRVFSSGQALGGHKRT  356 (413)
Q Consensus       333 kp~~C~~C~k~F~~~~~L~~H~r~  356 (413)
                      ..|.|.-||-.|++.+.|..|+..
T Consensus         7 arf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             cceeccccceeecChhHHHhhhhe
Confidence            358899999999999999999863

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.94  E-value=0.35  Score=25.89  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=20.1

Q ss_pred             ccccCcccccCCChhhhhhHHHh
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRS   62 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~   62 (413)
                      .|+|..|||.......++-|+--
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEee
Confidence            48999999999999999888654

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.24  E-value=0.16  Score=27.17  Aligned_cols=19  Identities=32%  Similarity=0.363  Sum_probs=16.6

Q ss_pred             CcccccCCChhhhhhHHHh
Q 044606           44 RLCFKNFSNGRALGGHMRS   62 (413)
Q Consensus        44 ~iC~K~F~~~~~L~~HmR~   62 (413)
                      +=|||.|+++..|.-|.+-
T Consensus         6 ~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHHH
Confidence            3499999999999999874

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.98  E-value=0.32  Score=26.07  Aligned_cols=23  Identities=22%  Similarity=0.534  Sum_probs=20.2

Q ss_pred             ccccCCccccccChhhhhhhhhh
Q 044606          276 KYKCETCKKVFKSYQALGGHRAS  298 (413)
Q Consensus       276 ~~~C~~C~k~F~~~~~L~~H~~~  298 (413)
                      .|.|..|||...+...++.|...
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEee
Confidence            38899999999999999999654

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=83.53  E-value=0.16  Score=40.35  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=22.5

Q ss_pred             ccccCcccccCCChhhhhhHHHhhcC
Q 044606           40 KHKCRLCFKNFSNGRALGGHMRSHML   65 (413)
Q Consensus        40 ~~~C~iC~K~F~~~~~L~~HmR~Htg   65 (413)
                      =|+|..||| +-.-.+|..|||.|--
T Consensus       146 FYKCe~CgK-YvDie~~~~H~k~HG~  170 (218)
T d2czra1         146 FYKCEECGK-YVDIENLEAHLREHGI  170 (218)
T ss_dssp             EEECTTTCC-EEEGGGHHHHHHTTTC
T ss_pred             EeehhhcCc-eecHHHHHHHHHHcCc
Confidence            389999999 7888999999999975

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.30  E-value=0.12  Score=34.89  Aligned_cols=24  Identities=33%  Similarity=0.635  Sum_probs=21.7

Q ss_pred             CccccCCcCcccCCchhhcccccc
Q 044606          333 KVHECPVCFRVFSSGQALGGHKRT  356 (413)
Q Consensus       333 kp~~C~~C~k~F~~~~~L~~H~r~  356 (413)
                      -.|-|..|+|.|.+...|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            358999999999999999999875

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.82  E-value=0.34  Score=28.48  Aligned_cols=11  Identities=36%  Similarity=0.754  Sum_probs=6.6

Q ss_pred             CCccccCCcCc
Q 044606          332 KKVHECPVCFR  342 (413)
Q Consensus       332 ~kp~~C~~C~k  342 (413)
                      +.|-.|++||.
T Consensus        18 ~~P~~CPvCg~   28 (37)
T d1nnqa2          18 EAPEYCPVCGA   28 (37)
T ss_dssp             CCCSBCTTTCC
T ss_pred             CCCCcCCCCCC
Confidence            45666666653

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.41  E-value=0.31  Score=29.94  Aligned_cols=23  Identities=26%  Similarity=0.522  Sum_probs=20.6

Q ss_pred             cccccCcccccCCChhhhhhHHH
Q 044606           39 EKHKCRLCFKNFSNGRALGGHMR   61 (413)
Q Consensus        39 ~~~~C~iC~K~F~~~~~L~~HmR   61 (413)
                      .+..|++|+.+++...+++-|+=
T Consensus         5 p~~eC~lC~vKYs~~~SvrdHiF   27 (48)
T d2yrka1           5 TKPECTLCGVKYSARLSIRDHIF   27 (48)
T ss_dssp             CCSCCTTTTCCCCSSSCHHHHHT
T ss_pred             CcccCcccceeeeeecchHhhhh
Confidence            46889999999999999999973