Citrus Sinensis ID: 044630
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 343 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RX77 | 620 | Nitrate transporter 1.7 O | yes | no | 0.982 | 0.543 | 0.481 | 6e-84 | |
| Q9LFX9 | 576 | Nitrate transporter 1.6 O | no | no | 0.982 | 0.585 | 0.482 | 1e-83 | |
| Q9CAR9 | 555 | Putative peptide/nitrate | no | no | 0.967 | 0.598 | 0.478 | 5e-69 | |
| Q9M9V7 | 587 | Probable peptide/nitrate | no | no | 0.976 | 0.570 | 0.409 | 6e-67 | |
| Q9LV10 | 616 | Probable peptide/nitrate | no | no | 0.965 | 0.537 | 0.423 | 5e-64 | |
| Q3E8X3 | 559 | Probable peptide/nitrate | no | no | 0.967 | 0.593 | 0.386 | 7e-64 | |
| Q944G5 | 636 | Probable peptide/nitrate | no | no | 0.935 | 0.504 | 0.391 | 1e-58 | |
| Q9M817 | 607 | Probable peptide transpor | no | no | 0.979 | 0.553 | 0.345 | 5e-55 | |
| Q8LPL2 | 591 | Probable peptide/nitrate | no | no | 0.973 | 0.565 | 0.350 | 1e-53 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.970 | 0.584 | 0.350 | 2e-53 |
| >sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 311 bits (796), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 168/349 (48%), Positives = 232/349 (66%), Gaps = 12/349 (3%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NET ERLGS G++A F VYL +++ Q A W+G + ++ A+++D Y+G+F
Sbjct: 64 NETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTNLTPLVGAYISDTYVGRF 123
Query: 61 VTIVLG---FLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI LLG++ +TLTA PQL P C +++ + C GPN+ Q+ L + + +L+
Sbjct: 124 KTIAFASFATLLGLITITLTASFPQLHPASCNSQDPL--SCGGPNKLQIGVLLLGLCFLS 181
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VS 176
VG +GGIRPCSIPF VDQFD RT++G K + SFFNWYY TFT+VL+IT T+V Y+Q VS
Sbjct: 182 VG-SGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQVS 240
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W GF+IPT + +V+ FAGM+ YV V EGS+FS I QV V A KKR+ +L + DG
Sbjct: 241 WIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLPAEDDG 300
Query: 237 --IFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEV 294
+Y P +K ++ SKL S+QFR L+KAA++ D + +G + RLCS+Q+VEEV
Sbjct: 301 TVTYYDPAIKSSVLSKLH-RSNQFRCLDKAAVVIEGD-LTPEGPPADKWRLCSVQEVEEV 358
Query: 295 NWLMIIVPIWASAIISFLPMQI-GTFVVGQAMRMDRHLGPKFEIPIPSI 342
L+ IVPIW++ IIS M GTF V QA++MDR+LGPKFEIP S+
Sbjct: 359 KCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIPAGSL 407
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Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 310 bits (793), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 168/348 (48%), Positives = 228/348 (65%), Gaps = 11/348 (3%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NET E+LGS G+ A F +YL N +++ + W G+ +F ++ A ++DAYIG+F
Sbjct: 27 NETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNFAPLLGALISDAYIGRF 86
Query: 61 VTIVLGFL---LGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI L LG++ VTLTA +PQL +C PN+ QL L + + +L+
Sbjct: 87 KTIAYASLFSILGLMTVTLTACLPQLH--PPPCNNPHPDECDDPNKLQLGILFLGLGFLS 144
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQTVSW 177
+G +GGIRPCSIPF VDQFD RT++G K + SFFNWYY T T+VL+ + T+V Y+QTVSW
Sbjct: 145 IG-SGGIRPCSIPFGVDQFDQRTEQGLKGVASFFNWYYLTLTMVLIFSHTVVVYLQTVSW 203
Query: 178 AWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDGI 237
GF+IPT + C +VL F GMR YV V EGS+FS I +V V A KKR ++ V DG
Sbjct: 204 VIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIARVIVAARKKRDLKISLVDDGT 263
Query: 238 --FYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVN 295
+Y PP+K + SKLPLT QF+FL+KAA+I + D + +G+ N RLCSIQ+VEEV
Sbjct: 264 EEYYEPPVKPGVLSKLPLT-DQFKFLDKAAVILDGD-LTSEGVPANKWRLCSIQEVEEVK 321
Query: 296 WLMIIVPIWASAIISFLPMQI-GTFVVGQAMRMDRHLGPKFEIPIPSI 342
L+ +VP+W++ IIS + M TF+V QA +MDRH+GP FEIP SI
Sbjct: 322 CLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRHMGPHFEIPAASI 369
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Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAR9|PTR20_ARATH Putative peptide/nitrate transporter At1g69860 OS=Arabidopsis thaliana GN=At1g69860 PE=5 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (667), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 167/349 (47%), Positives = 227/349 (65%), Gaps = 17/349 (4%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NET ERL +FG+MA F VY++ EY++ Q W+ + +F +I AF++D+Y GKF
Sbjct: 31 NETLERLATFGLMANFMVYMVREYHMDQVQAVTLINTWSALTNFAPIIGAFISDSYTGKF 90
Query: 61 VTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TIV G LLGML++T T++VP LRPP CT ++I GQCI + +QL L +F L+
Sbjct: 91 NTIVFGSIAELLGMLVLTFTSLVPNLRPPPCT-ADQITGQCIPYSYSQLYVLLSGLFLLS 149
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-TVS 176
VG GGIR CS+PF++DQFD T++GR+ SFF+WYYTT T+V L++ T+V YVQ +S
Sbjct: 150 VG-TGGIRSCSVPFSLDQFDDSTEEGREGSRSFFSWYYTTHTIVQLVSMTLVLYVQNNIS 208
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W GF IPTV F L+LLF G R YV V EGS+FS + +V V AYKKR+ + S G
Sbjct: 209 WGIGFAIPTVLNFFALLLLFVGTRYYVFVKPEGSVFSGVFKVLVAAYKKRKARFTS---G 265
Query: 237 IFYVPPLKKT-LGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVN 295
I Y PL +T L S + + QFRFLNKA I+ NNDE + R C+++Q+E++
Sbjct: 266 IDYHQPLLETDLQSNKLVLTDQFRFLNKAVIVMNNDEAGNE-----EWRTCTVRQIEDIK 320
Query: 296 WLMIIVPIWASAIISFLPM-QIGTFVVGQAMRMDRHL-GPKFEIPIPSI 342
++ I+PI+AS+II FL M Q TF V QA++MD G + IP SI
Sbjct: 321 SIISIIPIFASSIIGFLAMNQQQTFTVSQALKMDLQFPGTSYLIPPASI 369
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (649), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 142/347 (40%), Positives = 210/347 (60%), Gaps = 12/347 (3%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NETFE+LG G + +YL +N+ A + G ++F T++ AFL D+Y G++
Sbjct: 32 NETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAAFLCDSYFGRY 91
Query: 61 VTIVLGFL---LGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
T+ + LG + + LTA++ L P C E I C GP+ Q+ FL AM L
Sbjct: 92 KTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKE--IGSVCNGPSIGQIMFLAGAMVLLV 149
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VS 176
+G AGGIRPC++PF DQFD +T +G++ I SFFNWY+ TFT +++ T++ YVQ+ VS
Sbjct: 150 IG-AGGIRPCNLPFGADQFDPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLIVYVQSNVS 208
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W+ G IP + + G ++ FAG ++YV V A GS SI +V VVA KKRR L+ VG
Sbjct: 209 WSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRR--LKPVGPN 266
Query: 237 IFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVNW 296
Y SKL T QFRFL+K+AI +D++ +DG ++ +LCS+QQVEEV
Sbjct: 267 ELYNYIASDFKNSKLGHT-EQFRFLDKSAIQTQDDKLNKDGSPVDAWKLCSMQQVEEVKC 325
Query: 297 LMIIVPIWASAIISFLP-MQIGTFVVGQAMRMDRHLGP-KFEIPIPS 341
++ ++P+W SA + +L +Q T+ + Q+++ DR LGP F+IP S
Sbjct: 326 VIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGS 372
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 147/347 (42%), Positives = 212/347 (61%), Gaps = 16/347 (4%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NETFE+LG G ++ VYL +N+ A A++G +F T + AFL D Y G++
Sbjct: 56 NETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAAFLCDTYFGRY 115
Query: 61 VTI---VLGFLLGMLMVTLTAIVPQLRPPHC-TNEERIHGQCIGPNRNQLAFLHVAMFWL 116
T+ V+ LG ++ LTA VPQL P C T + I C GP+ Q+AFL + + +L
Sbjct: 116 KTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSI---CNGPSGGQIAFLLMGLGFL 172
Query: 117 AVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-V 175
VG AGGIRPC++ F DQF+ +++ G++ I+SFFNWY+ TFT +++ T+V YVQ+ V
Sbjct: 173 VVG-AGGIRPCNLAFGADQFNPKSESGKRGIDSFFNWYFFTFTFAQILSLTLVVYVQSNV 231
Query: 176 SWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKR--RHQLQSV 233
SW G TIP V +F ++ FAG ++YV + A GS + I QV VA KKR + Q
Sbjct: 232 SWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGLKPAKQPW 291
Query: 234 GDGIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEE 293
+ Y PP K SKL T QFRFL+KAAI+ D+++ DG +P +LC++QQVEE
Sbjct: 292 LNLYNYYPP--KYANSKLKYT-DQFRFLDKAAILTPEDKLQPDGKPADPWKLCTMQQVEE 348
Query: 294 VNWLMIIVPIWASAIISFLPM-QIGTFVVGQAMRMDRHLGP-KFEIP 338
V ++ ++PIW ++ I +L + Q T+ V QA++ DR LG F IP
Sbjct: 349 VKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLGSGGFVIP 395
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E8X3|PTR52_ARATH Probable peptide/nitrate transporter At5g28470 OS=Arabidopsis thaliana GN=At5g28470 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 244 bits (623), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 133/344 (38%), Positives = 200/344 (58%), Gaps = 12/344 (3%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NE+FE+L S ++ +VYL+ +YN+ ++ W G + LT+ AF++DAY+G+F
Sbjct: 30 NESFEKLASMSLIGNLSVYLMTKYNLGGVFLVNVINIWFGSCNILTLAGAFVSDAYLGRF 89
Query: 61 VTIVLGFL---LGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
T++LG + +GM + LTA +P LRP C + Q P + QL L + LA
Sbjct: 90 WTLLLGSIASFIGMGIFALTAALPSLRPDACIDPSNCSNQ---PAKWQLGVLFSGLGLLA 146
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VS 176
+G AGG+RPC+I F DQFD+ T KG+ + +FFNW+Y +FT+ L+I T V Y+QT +S
Sbjct: 147 IG-AGGVRPCNIAFGADQFDTSTKKGKAHLETFFNWWYFSFTVALVIALTGVVYIQTNIS 205
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W GF IPT CL + G Y+ AEGS+F+ IV+V A KKR+ + S D
Sbjct: 206 WVIGFVIPTACLALSITTFVIGQHTYICAKAEGSVFADIVKVVTAACKKRKVKPGS--DI 263
Query: 237 IFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVNW 296
FY+ P + L + RF +KA+I+ N +E+ +DG RLCS+QQV+ +
Sbjct: 264 TFYIGPSNDGSPTTLVRDKHRLRFFDKASIVTNPNELNEDGNAKYKWRLCSVQQVKNLKC 323
Query: 297 LMIIVPIWASAIISF-LPMQIGTFVVGQAMRMDRHLGP-KFEIP 338
+ I+P+W + I F L Q + + QAM+MD+ GP F++P
Sbjct: 324 VTAILPVWVTGIACFILTDQQNIYGILQAMQMDKTFGPHNFQVP 367
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/355 (39%), Positives = 204/355 (57%), Gaps = 34/355 (9%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NETFE+LG G ++ VYL + +N+ A A++G +F T I AFL D Y G++
Sbjct: 74 NETFEKLGIIGTLSNLLVYLTSVFNLKSYTAATIINAFSGTINFGTFIAAFLCDTYFGRY 133
Query: 61 VTI---VLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
T+ V+ LG ++ LTA +P L P C N+ C GP+ Q+ FL + + +L
Sbjct: 134 KTLSVAVIACFLGSFVILLTAAIPSLHPVACGNKI----SCEGPSVGQILFLLMGLGFLV 189
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VS 176
VG AGGIRPC++ F DQF+ +++ G+K INSFFNWY+ TFT +I+ T V Y+Q+ VS
Sbjct: 190 VG-AGGIRPCNLAFGADQFNPKSESGKKGINSFFNWYFFTFTFAQIISLTAVVYIQSNVS 248
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W G IP +F V+ FAG R+YV V A GS + I +V A KKR
Sbjct: 249 WTIGLIIPVALMFLACVIFFAGDRLYVKVKASGSPLAGIARVIAAAIKKRG--------- 299
Query: 237 IFYVPPLKK---TLGSKLPLT--------SSQFRFLNKAAIIDNNDEIKQDGICMNPRRL 285
+ P+K+ L + +P + QFRFL+KAAI+ +++ DG +P +L
Sbjct: 300 ---LKPVKQPWVNLYNHIPSNYANTTLKYTDQFRFLDKAAIMTPEEKLNSDGTASDPWKL 356
Query: 286 CSIQQVEEVNWLMIIVPIWASAIISFLPMQIG-TFVVGQAMRMDRHLGP-KFEIP 338
C++QQVEEV ++ ++PIW ++ I +L + I T+ V QA++ DR LG F IP
Sbjct: 357 CTLQQVEEVKCIVRVIPIWFASTIYYLAITIQMTYPVFQALQSDRRLGSGGFRIP 411
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (547), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 194/350 (55%), Gaps = 14/350 (4%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NE FE++ S+G++ +YL+ +Y A W+ ++F ++ AFL+D+Y+G+F
Sbjct: 34 NEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRF 93
Query: 61 VTIVLGFL---LGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
+TI + L LGM+++ LTA++PQ++P C + C +QLA L+ A ++
Sbjct: 94 LTISIASLSSFLGMVLLWLTAMLPQVKPSPC-DPTAAGSHCGSSTASQLALLYSAFALIS 152
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTD-KGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-V 175
+ G+GGIRPCS+ F DQ D++ + K + + SFF WYY + + +LI T + Y+Q +
Sbjct: 153 I-GSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHL 211
Query: 176 SWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGD 235
W GF +P V + +L +YV SLF+ + Q V AYKKR+ L D
Sbjct: 212 GWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKKRKLSLPDHHD 271
Query: 236 GIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDN-NDEIKQDGICMNPRRLCSIQQVEEV 294
+K S++ S + RFLNKA +I N +EI DG +NP RLC+ +VEE+
Sbjct: 272 SFDCYYHMKD---SEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEEL 328
Query: 295 NWLMIIVPIWASAIISFLPMQIGTFVVGQAMRMDRHL---GPKFEIPIPS 341
L+ ++PIW++ I+ + +F + QA MDR L G F++P S
Sbjct: 329 KALIKVIPIWSTGIMMSINTSQSSFQLLQATSMDRRLSRHGSSFQVPAGS 378
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 210 bits (535), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 122/348 (35%), Positives = 195/348 (56%), Gaps = 14/348 (4%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NE FE++ S+G++ +YL+++Y + W +F+ ++ AFL+D+Y+G+F
Sbjct: 36 NEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAATNFMPLVGAFLSDSYLGRF 95
Query: 61 VTIV---LGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
+TIV L LLGM+++ LTA++PQ++P C + C +QLA L+ A ++
Sbjct: 96 LTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGTN--CSSATSSQLALLYTAFALIS 153
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTD-KGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-V 175
+ G+GGIRPCS+ F DQ D++ + K + + SFF WYY + ++ +LI T++ Y+Q +
Sbjct: 154 I-GSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSSVAVLIAFTVIVYIQDHL 212
Query: 176 SWAWGFTIPTVC-LFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVG 234
W GF IP + L G + +FA +YV SLF+ + QV AY KR L
Sbjct: 213 GWKIGFGIPAILMLLAGFLFVFAS-PLYVKRDVSKSLFTGLAQVVAAAYVKRNLTLPDHH 271
Query: 235 DGIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDE-IKQDGICMNPRRLCSIQQVEE 293
D LK S+L S + RFLNKA I N DE + DG+ +N RLC+ QVE+
Sbjct: 272 DSRDCYYRLKD---SELKAPSDKLRFLNKACAISNRDEDLGSDGLALNQWRLCTTDQVEK 328
Query: 294 VNWLMIIVPIWASAIISFLPMQIGTFVVGQAMRMDRHLGPKFEIPIPS 341
+ L+ ++P+W++ I+ + + +F + QA MDR L IP+
Sbjct: 329 LKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRRLSSNSTFQIPA 376
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/348 (35%), Positives = 191/348 (54%), Gaps = 15/348 (4%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NE ERL +G+ YL + N A A W+G +I AF+ADAY+G++
Sbjct: 37 NECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRY 96
Query: 61 VTI---VLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI V ++ GM ++TL+A VP L+P +C N + H PN +Q A VA++ +A
Sbjct: 97 WTIATFVFIYVSGMTLLTLSASVPGLKPGNC-NADTCH-----PNSSQTAVFFVALYMIA 150
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-TVS 176
+G GGI+PC F DQFD + + + +SFFNW+Y + + LI +T++ ++Q V
Sbjct: 151 LG-TGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVG 209
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W WGF +PTV + + F G R Y L GS + I QV V A++K ++
Sbjct: 210 WGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL 269
Query: 237 IFYVPPLKKTL-GSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVN 295
+F + + GS+ + + +F +KAA+ +D IK + NP RLCS+ QVEE+
Sbjct: 270 LFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEV--NPWRLCSVTQVEELK 327
Query: 296 WLMIIVPIWASAII-SFLPMQIGTFVVGQAMRMDRHLGPKFEIPIPSI 342
++ ++P+WA+ I+ + + Q+ T V Q MD+H+G FEIP S+
Sbjct: 328 SIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASL 375
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 343 | ||||||
| 356498154 | 620 | PREDICTED: nitrate transporter 1.7-like | 0.988 | 0.546 | 0.54 | 1e-94 | |
| 356501934 | 629 | PREDICTED: nitrate transporter 1.7-like | 0.988 | 0.538 | 0.531 | 5e-94 | |
| 255558256 | 621 | nitrate transporter, putative [Ricinus c | 0.988 | 0.545 | 0.536 | 6e-94 | |
| 225424885 | 619 | PREDICTED: nitrate transporter 1.7 [Viti | 0.988 | 0.547 | 0.511 | 4e-93 | |
| 357486541 | 608 | Peptide transporter PTR1 [Medicago trunc | 0.988 | 0.557 | 0.505 | 1e-91 | |
| 224102695 | 552 | predicted protein [Populus trichocarpa] | 0.991 | 0.615 | 0.530 | 1e-90 | |
| 356567570 | 622 | PREDICTED: nitrate transporter 1.7-like | 0.988 | 0.545 | 0.515 | 3e-88 | |
| 449434837 | 598 | PREDICTED: nitrate transporter 1.7-like | 0.973 | 0.558 | 0.495 | 3e-83 | |
| 449478464 | 598 | PREDICTED: LOW QUALITY PROTEIN: nitrate | 0.973 | 0.558 | 0.495 | 3e-83 | |
| 297790444 | 619 | proton-dependent oligopeptide transport | 0.982 | 0.544 | 0.475 | 2e-82 |
| >gi|356498154|ref|XP_003517918.1| PREDICTED: nitrate transporter 1.7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 242/350 (69%), Gaps = 11/350 (3%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NETFERL +FG+ A F VYL E+++ Q Y + W+G+ +F +I AF++DAY+G+F
Sbjct: 67 NETFERLAAFGLFANFMVYLTREFHLDQVYASNILNIWSGITNFFPLIGAFISDAYVGRF 126
Query: 61 VTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI LLGM++VTLTA +P+L PP CT +++ QC+ + L L + L+
Sbjct: 127 WTIAFASFSSLLGMVVVTLTAWLPELHPPPCTPQQQALNQCVKASTPHLGALLTGLCLLS 186
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-TVS 176
VG AG IRPCSIPF VDQFD TD+G+K INSFFNWYYTTFT+VLLIT T+V Y+Q +VS
Sbjct: 187 VGSAG-IRPCSIPFGVDQFDPSTDEGKKGINSFFNWYYTTFTVVLLITQTVVVYIQDSVS 245
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQL--QSVG 234
W GF IPTVC+FC +++ F G RIYV V EGS+F+SI QV V AY+KR+ +L +
Sbjct: 246 WKIGFAIPTVCMFCSIIMFFVGTRIYVHVKPEGSIFTSIAQVLVAAYRKRKVELPREKHV 305
Query: 235 DGIFYVPPLKKT-LGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEE 293
DG+FY PPL T + SKLPLT +QFR LNKAA+I E+ D N +L SIQQVEE
Sbjct: 306 DGVFYDPPLIGTNVLSKLPLT-NQFRGLNKAAVI-MEGELNPDRSRANKWKLVSIQQVEE 363
Query: 294 VNWLMIIVPIWASAIISFLPM-QIGTFVVGQAMRMDRHLGPKFEIPIPSI 342
V L I PIWA+ I+ F M Q GTF V QA++MDRHLGPKF+IP S+
Sbjct: 364 VKCLARIFPIWAAGILGFTSMAQQGTFTVSQALKMDRHLGPKFQIPAGSL 413
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501934|ref|XP_003519778.1| PREDICTED: nitrate transporter 1.7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 186/350 (53%), Positives = 241/350 (68%), Gaps = 11/350 (3%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NETFERL +FG+ A F VYL E+++ Q Y + W+G+ +F +I AF++DAY+G+F
Sbjct: 65 NETFERLAAFGLFANFMVYLTREFHLDQVYASNILNIWSGITNFFPLIGAFISDAYVGRF 124
Query: 61 VTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI LLGM+MVTLTA +P+L PP CT +++ QC+ + L + L+
Sbjct: 125 RTIAFASFSSLLGMVMVTLTAWLPELHPPPCTPQQQALNQCVKASTPHQGALLTGLCLLS 184
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-TVS 176
+G AG IRPCSIPF VDQFD TD+G+K INSFFNWYYTTFT+VLLIT T+V Y+Q +VS
Sbjct: 185 IGSAG-IRPCSIPFGVDQFDPTTDEGKKGINSFFNWYYTTFTVVLLITQTVVVYIQDSVS 243
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVG-- 234
W GF IPTVC+FC +++ F G RIYV V EGS+F+SI QV V AY+KR+ +L S
Sbjct: 244 WKIGFAIPTVCMFCSIIMFFVGTRIYVHVKPEGSIFTSIAQVLVAAYRKRKVELPSEKHV 303
Query: 235 DGIFYVPPLKKT-LGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEE 293
DG+FY PPL T + SKLPLT +QFR LNKAA+I ++ DG N ++ SIQQVE+
Sbjct: 304 DGVFYDPPLTGTQVFSKLPLT-NQFRCLNKAAVIMEGEQ-NPDGSRANKWKVVSIQQVED 361
Query: 294 VNWLMIIVPIWASAIISFLPM-QIGTFVVGQAMRMDRHLGPKFEIPIPSI 342
V L I PIWA+ I+ F M Q GTF V QA++MDRHLG KF+IP S+
Sbjct: 362 VKCLARIFPIWAAGILGFTSMAQQGTFTVSQALKMDRHLGAKFQIPAGSL 411
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558256|ref|XP_002520155.1| nitrate transporter, putative [Ricinus communis] gi|223540647|gb|EEF42210.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 189/352 (53%), Positives = 242/352 (68%), Gaps = 13/352 (3%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NETFERL +FG++A F VYL+ E+++ Q A W+G+ +F ++ AF++DAY+G+F
Sbjct: 66 NETFERLATFGLLANFMVYLMKEFHMEQVTAANIINIWSGLTNFAPLLGAFISDAYVGRF 125
Query: 61 VTIVLG---FLLGMLMVTLTAIVPQLRPPHCTNEERIH--GQCIGPNRNQLAFLHVAMFW 115
TI LGM+ VTLTA +P L P C + + C QLA L + + +
Sbjct: 126 RTIAFASCAAFLGMVTVTLTAWLPNLHPQKCHQQSQQQYADNCESATPLQLAVLLMGLGF 185
Query: 116 LAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-T 174
L++G GGIRPCSIPF VDQFD T++G K INSF+NWYYTTFTLV+LIT T+V Y+Q +
Sbjct: 186 LSIG-TGGIRPCSIPFGVDQFDPTTEEGMKGINSFYNWYYTTFTLVILITLTVVVYIQDS 244
Query: 175 VSWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVG 234
+SW GF+IPTV + C ++L F G +IY+ V EGS+FS + QVFV AYKKRR +L G
Sbjct: 245 ISWVIGFSIPTVLMLCSILLFFIGTKIYIHVKPEGSIFSGLAQVFVAAYKKRRLKLPDHG 304
Query: 235 ---DGIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQV 291
DGIFY P +K+ + SKLPLT +QFRFLNKAA+I+ ND I DG C N RLCSIQQ+
Sbjct: 305 EVVDGIFYDPTVKEAVLSKLPLT-NQFRFLNKAAMIEKND-INPDGSCANEWRLCSIQQI 362
Query: 292 EEVNWLMIIVPIWASAIISFLP-MQIGTFVVGQAMRMDRHLGPKFEIPIPSI 342
EEV L I PIWAS I+SF +Q GTF V QAM+MDRHLG KF+IP SI
Sbjct: 363 EEVKCLFKIGPIWASGIVSFTAILQQGTFTVSQAMKMDRHLGHKFQIPAGSI 414
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424885|ref|XP_002269340.1| PREDICTED: nitrate transporter 1.7 [Vitis vinifera] gi|296086440|emb|CBI32029.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 179/350 (51%), Positives = 243/350 (69%), Gaps = 11/350 (3%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NETFERL +FG++A F VYLLNE+++ Q Y W+G +F ++ AF++DA +G+F
Sbjct: 65 NETFERLATFGLLANFMVYLLNEFHLDQVYATNVLNIWSGTTNFAPLVGAFISDACVGRF 124
Query: 61 VTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI LLGM+ +TLT+ +PQL PP CT +++ + QC GP Q+ L + + +L
Sbjct: 125 RTIAFASFASLLGMVTLTLTSWIPQLHPPSCTEDQQQNDQCTGPTSAQMGILFLGLGFLT 184
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-TVS 176
+G GGIRPCSIPF VDQFD T++GR+ INSF+NWYYT+FTLVL+I T+V Y+Q +VS
Sbjct: 185 IG-TGGIRPCSIPFGVDQFDPTTEQGRRGINSFYNWYYTSFTLVLMIALTLVVYIQDSVS 243
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVG-- 234
W GF IPT+ + ++L F G R+YV V EGS+FS I +VFV AYKKRR ++ G
Sbjct: 244 WVLGFGIPTLLMVGSIILFFLGTRVYVYVKPEGSIFSGIARVFVAAYKKRRVKIPVEGEK 303
Query: 235 DGIFYVPPLKK-TLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEE 293
+G +Y PPL K ++ +KLP T +FR+LNKAA+I ++ +G N RLCSIQQVEE
Sbjct: 304 EGAYYDPPLTKGSIVAKLPFT-KRFRWLNKAAVILEGEK-DANGCPSNQWRLCSIQQVEE 361
Query: 294 VNWLMIIVPIWASAIISFLPM-QIGTFVVGQAMRMDRHLGPKFEIPIPSI 342
V L+ I+P+WAS II F + Q GTF V QA++MDRHLGPKF+IP S+
Sbjct: 362 VKCLLKIIPVWASGIICFTAISQQGTFTVSQALKMDRHLGPKFQIPAGSL 411
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357486541|ref|XP_003613558.1| Peptide transporter PTR1 [Medicago truncatula] gi|355514893|gb|AES96516.1| Peptide transporter PTR1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 177/350 (50%), Positives = 244/350 (69%), Gaps = 11/350 (3%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NE+FERL +FG++A F VYL E+++ Q + + W G+++F ++ AF++D Y G+F
Sbjct: 44 NESFERLAAFGLLANFMVYLTREFHLEQVHASNILNIWGGISNFAPLLGAFISDTYTGRF 103
Query: 61 VTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI LLGM VTLTA +P+L+PP CT +++ QC+ N +Q+ FL + + +L+
Sbjct: 104 KTIAFASFFSLLGMTAVTLTAWLPKLQPPSCTPQQQALNQCVTANSSQVGFLFMGLIFLS 163
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-TVS 176
+G +G IRPCSIPF VDQFD T++G+K INSFFNWYYT+FT+VLL T T++ Y+Q +VS
Sbjct: 164 IGSSG-IRPCSIPFGVDQFDPTTEEGKKGINSFFNWYYTSFTVVLLFTQTVIVYIQDSVS 222
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVG-- 234
W +GF IPT+C+ ++L F G +IYV V EGS+FSSI QV V ++KKR+ +L +
Sbjct: 223 WKFGFAIPTLCMLFSIILFFIGTKIYVHVKPEGSIFSSIAQVLVASFKKRKVKLPNEKHV 282
Query: 235 DGIFYVPPL-KKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEE 293
DGIFY PPL K + SKLP T +QFR L+KAA++ D + DG +N L SIQQVEE
Sbjct: 283 DGIFYDPPLIGKAILSKLPPT-NQFRVLDKAALVMEGD-LNPDGTIVNQWNLVSIQQVEE 340
Query: 294 VNWLMIIVPIWASAIISFLPM-QIGTFVVGQAMRMDRHLGPKFEIPIPSI 342
V L +PIWA+ I+ F M Q GTF+V QAM+MDRHLGPKF+IP S+
Sbjct: 341 VKCLARTLPIWAAGILGFTAMAQQGTFIVSQAMKMDRHLGPKFQIPAGSL 390
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102695|ref|XP_002312780.1| predicted protein [Populus trichocarpa] gi|222852600|gb|EEE90147.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 189/356 (53%), Positives = 240/356 (67%), Gaps = 16/356 (4%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NETFERL +FG++A F VYL+ +++ Q A W+GV +F ++ AF++DAY+G+F
Sbjct: 7 NETFERLATFGLLANFMVYLMRVFHLEQVTAANVINIWSGVTNFAPLVGAFISDAYVGRF 66
Query: 61 VTIVLG---FLLGMLMVTLTAIVPQLRPPHCTNE--ERIHGQCIGPNRNQLAFLHVAMFW 115
TI LGM+ VT TA VP L P C E ++ +G C P QL L + + +
Sbjct: 67 KTIAFASCAAFLGMVTVTSTAWVPYLHPQKCEPEGKQQSYGNCESPTSMQLGVLLLGLGF 126
Query: 116 LAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-T 174
L++G GGIRPCSIPF VDQFD T++G K I+S++NWYYTTFT+V+LIT T V YVQ +
Sbjct: 127 LSIG-TGGIRPCSIPFGVDQFDPTTEEGIKGISSYYNWYYTTFTVVMLITLTAVVYVQDS 185
Query: 175 VSWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVG 234
VSW GF IPTV + C ++L F G RIYV V EGS+FS I QVFV AYKKRR +L
Sbjct: 186 VSWVLGFGIPTVLMLCSIILFFIGTRIYVHVKPEGSVFSGIAQVFVSAYKKRRLKLPDNC 245
Query: 235 -----DGIFYVPPLKK--TLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCS 287
DGIFY PP+K T+ SKLPLT +Q RFLNKAA+I+ ++K DG C RLCS
Sbjct: 246 DGEQVDGIFYDPPIKDQLTILSKLPLT-NQIRFLNKAAMIEKETDLKPDGSCAKQWRLCS 304
Query: 288 IQQVEEVNWLMIIVPIWASAIISFLPM-QIGTFVVGQAMRMDRHLGPKFEIPIPSI 342
+QQVEEV L+ I PIWAS+I+S M Q GTF V QA++MDRHLG KF+IP SI
Sbjct: 305 VQQVEEVKCLIKIGPIWASSIVSLTSMVQQGTFTVSQALKMDRHLGEKFQIPASSI 360
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567570|ref|XP_003551991.1| PREDICTED: nitrate transporter 1.7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 181/351 (51%), Positives = 242/351 (68%), Gaps = 12/351 (3%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NETFERL FG+ A F VYL E+++ Q Y + W G+++F ++ AF++DAY+G+F
Sbjct: 69 NETFERLAVFGLFANFMVYLTREFHLDQVYASNIISLWFGISNFTPLLGAFISDAYVGRF 128
Query: 61 VTIVL---GFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI G L G+++V+LT+ +P+L PP CT ++ QC+ + +Q+ L + + +L
Sbjct: 129 RTIAFASFGTLSGLIVVSLTSWLPELHPPSCTPQQLASRQCVRASSSQIGVLLMGLCFLT 188
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-TVS 176
+G AG +RPCSIPF VDQFD TD+GRK INS+FNWYYTTFT+VLL+T T+V Y+Q +VS
Sbjct: 189 IGSAG-VRPCSIPFGVDQFDPTTDEGRKGINSYFNWYYTTFTMVLLVTQTVVVYIQDSVS 247
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQL---QSV 233
W GF IPTVC+ C +++ F G R+YV V EGS+FS I QV V AYKKR+ L +
Sbjct: 248 WRIGFGIPTVCMLCSIIMFFVGTRVYVHVKPEGSIFSGIAQVLVTAYKKRKLNLPMSEEK 307
Query: 234 GDGIFYVPPL-KKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVE 292
DG+FY PPL T+ SKLPLT +FR LNKAA+I E+ DG +N RL SIQQVE
Sbjct: 308 PDGVFYDPPLIGITVVSKLPLT-KEFRALNKAALI-MEGELNPDGTRVNQWRLVSIQQVE 365
Query: 293 EVNWLMIIVPIWASAIISFLPM-QIGTFVVGQAMRMDRHLGPKFEIPIPSI 342
EV L I+PIWA+ I+S + M Q GTF V QAM+M+RHLG KF+IP S+
Sbjct: 366 EVKCLARIIPIWAAGILSLISMTQQGTFTVSQAMKMNRHLGAKFQIPAGSV 416
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434837|ref|XP_004135202.1| PREDICTED: nitrate transporter 1.7-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 173/349 (49%), Positives = 228/349 (65%), Gaps = 15/349 (4%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NETFERL + G++A F VYL Y++ Q + G W GV FL ++ AFL+DAYIG++
Sbjct: 51 NETFERLAAMGLLANFMVYLKKMYHMDQVSATSLMGLWTGVTSFLPLLGAFLSDAYIGRY 110
Query: 61 VTIVLGFL---LGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI + + LGM +TLTA +PQL PP C + C+ P +QL FL +++ ++
Sbjct: 111 WTIAIASIFSFLGMASMTLTAWLPQLHPPGCGGSVK----CLTPTASQLGFLIMSLCLVS 166
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-TVS 176
+G +GGIRPCSIPF VDQFD T+KGRK I SF+NWYY TF +VL+IT TIV Y+Q +VS
Sbjct: 167 IG-SGGIRPCSIPFGVDQFDPTTEKGRKGIASFYNWYYATFMVVLVITLTIVVYIQDSVS 225
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W G+ IPTV +FC ++L F G +YV + EGS+F+ + QV V AYKKR +L G
Sbjct: 226 WVLGYGIPTVLMFCSIILFFMGTHVYVFIKPEGSIFTGLAQVAVAAYKKRHLKLPDDRKG 285
Query: 237 IFYVPPLK--KTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEV 294
FY PPL + SKLPLT +QF FLNKAAI ND I DG +N L SIQQVEE+
Sbjct: 286 -FYDPPLDPASVVLSKLPLT-NQFSFLNKAAIKTEND-INPDGRRVNKWNLSSIQQVEEL 342
Query: 295 NWLMIIVPIWASAIISFLP-MQIGTFVVGQAMRMDRHLGPKFEIPIPSI 342
L + PIW + I+S P +Q TF + QA++M+RH+G F+IP SI
Sbjct: 343 KCLFRVFPIWVTGILSLTPIIQQSTFSISQALKMNRHMGSNFQIPPASI 391
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449478464|ref|XP_004155325.1| PREDICTED: LOW QUALITY PROTEIN: nitrate transporter 1.7-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 173/349 (49%), Positives = 228/349 (65%), Gaps = 15/349 (4%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NETFERL + G++A F VYL Y++ Q + G W GV FL ++ AFL+DAYIG++
Sbjct: 51 NETFERLAAMGLLANFMVYLKKMYHMDQVSATSLMGLWTGVTSFLPLLGAFLSDAYIGRY 110
Query: 61 VTIVLGFL---LGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI + + LGM +TLTA +PQL PP C + C+ P +QL FL +++ ++
Sbjct: 111 WTIAIASIFSFLGMASMTLTAWLPQLHPPGCGGSVK----CLTPTASQLGFLIMSLCLVS 166
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-TVS 176
+G +GGIRPCSIPF VDQFD T+KGRK I SF+NWYY TF +VL+IT TIV Y+Q +VS
Sbjct: 167 IG-SGGIRPCSIPFGVDQFDPTTEKGRKGIASFYNWYYATFMVVLVITLTIVVYIQDSVS 225
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W G+ IPTV +FC ++L F G +YV + EGS+F+ + QV V AYKKR +L G
Sbjct: 226 WVLGYGIPTVLMFCSIILFFMGTHVYVFIKPEGSIFTGLAQVAVAAYKKRHLKLPDDRKG 285
Query: 237 IFYVPPLK--KTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEV 294
FY PPL + SKLPLT +QF FLNKAAI ND I DG +N L SIQQVEE+
Sbjct: 286 -FYDPPLDPASVVLSKLPLT-NQFSFLNKAAIKTEND-INPDGRRVNKWNLSSIQQVEEL 342
Query: 295 NWLMIIVPIWASAIISFLP-MQIGTFVVGQAMRMDRHLGPKFEIPIPSI 342
L + PIW + I+S P +Q TF + QA++M+RH+G F+IP SI
Sbjct: 343 KCLFRVFPIWVTGILSLTPIIQQSTFSISQALKMNRHMGSNFQIPPASI 391
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790444|ref|XP_002863113.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297308935|gb|EFH39372.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/349 (47%), Positives = 231/349 (66%), Gaps = 12/349 (3%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NET ERLGS G++A F VYL +++ Q A W+G + ++ A+++D Y+G+F
Sbjct: 63 NETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTNLTPLVGAYISDTYVGRF 122
Query: 61 VTIVLG---FLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI LLG++ +TLTA +PQL P C +++ + C GPN+ Q L + + +L+
Sbjct: 123 KTIAFASFATLLGLITITLTASLPQLHPASCNSQDPL--SCGGPNKLQFGVLLLGLCFLS 180
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VS 176
VG +GGIRPCSIPF VDQFD RT+ G K + SFFNWYY TFT+VL+IT T++ Y+Q VS
Sbjct: 181 VG-SGGIRPCSIPFGVDQFDQRTEDGAKGVASFFNWYYLTFTVVLIITQTVIVYIQDQVS 239
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W GF+IPT + +V+ FAGM+ YV V EGS+FS I QV V A KKR+ ++ + DG
Sbjct: 240 WIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKVPAEDDG 299
Query: 237 I--FYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEV 294
+Y P +K ++ SKL S+QFRFL+KAA+I D + +G + RLCS+Q+VEEV
Sbjct: 300 TVNYYDPAIKSSVLSKLH-RSNQFRFLDKAAVIIEGD-LTPEGAPADKWRLCSVQEVEEV 357
Query: 295 NWLMIIVPIWASAIISFLPMQI-GTFVVGQAMRMDRHLGPKFEIPIPSI 342
L+ IVP+W++ IIS M GTF V QA++M+RHLGP FEIP S+
Sbjct: 358 KCLIRIVPVWSAGIISLAAMTTQGTFTVSQALKMERHLGPHFEIPAGSL 406
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 343 | ||||||
| TAIR|locus:2205719 | 576 | NRT1.6 "nitrate transporter 1. | 0.982 | 0.585 | 0.494 | 1.9e-83 | |
| TAIR|locus:2196800 | 620 | NRT1.7 "nitrate transporter 1. | 0.982 | 0.543 | 0.484 | 7.6e-80 | |
| TAIR|locus:2196734 | 555 | AT1G69860 [Arabidopsis thalian | 0.965 | 0.596 | 0.488 | 2.4e-76 | |
| TAIR|locus:2035005 | 587 | NRT1.9 "nitrate transporter 1. | 0.976 | 0.570 | 0.409 | 2.5e-65 | |
| TAIR|locus:2172249 | 616 | GTR2 "AT5G62680" [Arabidopsis | 0.965 | 0.537 | 0.423 | 4.2e-63 | |
| TAIR|locus:2147499 | 559 | AT5G28470 [Arabidopsis thalian | 0.967 | 0.593 | 0.383 | 3.4e-61 | |
| TAIR|locus:2037452 | 607 | AT1G52190 [Arabidopsis thalian | 0.979 | 0.553 | 0.345 | 3e-53 | |
| TAIR|locus:2093442 | 591 | AT3G16180 [Arabidopsis thalian | 0.973 | 0.565 | 0.354 | 8e-53 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.970 | 0.584 | 0.356 | 4.4e-52 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.976 | 0.562 | 0.335 | 1.4e-46 |
| TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 172/348 (49%), Positives = 232/348 (66%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NET E+LGS G+ A F +YL N +++ + W G+ +F ++ A ++DAYIG+F
Sbjct: 27 NETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNFAPLLGALISDAYIGRF 86
Query: 61 VTIVLGFL---LGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI L LG++ VTLTA +PQL PP C N +C PN+ QL L + + +L+
Sbjct: 87 KTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPHP--DECDDPNKLQLGILFLGLGFLS 144
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQTVSW 177
+G +GGIRPCSIPF VDQFD RT++G K + SFFNWYY T T+VL+ + T+V Y+QTVSW
Sbjct: 145 IG-SGGIRPCSIPFGVDQFDQRTEQGLKGVASFFNWYYLTLTMVLIFSHTVVVYLQTVSW 203
Query: 178 AWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDGI 237
GF+IPT + C +VL F GMR YV V EGS+FS I +V V A KKR ++ V DG
Sbjct: 204 VIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIARVIVAARKKRDLKISLVDDGT 263
Query: 238 --FYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVN 295
+Y PP+K + SKLPLT QF+FL+KAA+I + D + +G+ N RLCSIQ+VEEV
Sbjct: 264 EEYYEPPVKPGVLSKLPLTD-QFKFLDKAAVILDGD-LTSEGVPANKWRLCSIQEVEEVK 321
Query: 296 WLMIIVPIWASAIISFLPMQI-GTFVVGQAMRMDRHLGPKFEIPIPSI 342
L+ +VP+W++ IIS + M TF+V QA +MDRH+GP FEIP SI
Sbjct: 322 CLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRHMGPHFEIPAASI 369
|
|
| TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
Identities = 169/349 (48%), Positives = 233/349 (66%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NET ERLGS G++A F VYL +++ Q A W+G + ++ A+++D Y+G+F
Sbjct: 64 NETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTNLTPLVGAYISDTYVGRF 123
Query: 61 VTIVLG-F--LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI F LLG++ +TLTA PQL P C +++ + C GPN+ Q+ L + + +L+
Sbjct: 124 KTIAFASFATLLGLITITLTASFPQLHPASCNSQDPL--SCGGPNKLQIGVLLLGLCFLS 181
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VS 176
VG +GGIRPCSIPF VDQFD RT++G K + SFFNWYY TFT+VL+IT T+V Y+Q VS
Sbjct: 182 VG-SGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQVS 240
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W GF+IPT + +V+ FAGM+ YV V EGS+FS I QV V A KKR+ +L + DG
Sbjct: 241 WIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLPAEDDG 300
Query: 237 I--FYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEV 294
+Y P +K ++ SKL S+QFR L+KAA++ D + +G + RLCS+Q+VEEV
Sbjct: 301 TVTYYDPAIKSSVLSKLH-RSNQFRCLDKAAVVIEGD-LTPEGPPADKWRLCSVQEVEEV 358
Query: 295 NWLMIIVPIWASAIISFLPMQI-GTFVVGQAMRMDRHLGPKFEIPIPSI 342
L+ IVPIW++ IIS M GTF V QA++MDR+LGPKFEIP S+
Sbjct: 359 KCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIPAGSL 407
|
|
| TAIR|locus:2196734 AT1G69860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 171/350 (48%), Positives = 229/350 (65%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NET ERL +FG+MA F VY++ EY++ Q W+ + +F +I AF++D+Y GKF
Sbjct: 31 NETLERLATFGLMANFMVYMVREYHMDQVQAVTLINTWSALTNFAPIIGAFISDSYTGKF 90
Query: 61 VTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TIV G LLGML++T T++VP LRPP CT ++ I GQCI + +QL L +F L+
Sbjct: 91 NTIVFGSIAELLGMLVLTFTSLVPNLRPPPCTADQ-ITGQCIPYSYSQLYVLLSGLFLLS 149
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VS 176
VG GGIR CS+PF++DQFD T++GR+ SFF+WYYTT T+V L++ T+V YVQ +S
Sbjct: 150 VG-TGGIRSCSVPFSLDQFDDSTEEGREGSRSFFSWYYTTHTIVQLVSMTLVLYVQNNIS 208
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W GF IPTV F L+LLF G R YV V EGS+FS + +V V AYKKR+ + S G
Sbjct: 209 WGIGFAIPTVLNFFALLLLFVGTRYYVFVKPEGSVFSGVFKVLVAAYKKRKARFTS---G 265
Query: 237 IFYVPPLKKT-LGS-KLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEV 294
I Y PL +T L S KL LT QFRFLNKA I+ NNDE + R C+++Q+E++
Sbjct: 266 IDYHQPLLETDLQSNKLVLTD-QFRFLNKAVIVMNNDEAGNE-----EWRTCTVRQIEDI 319
Query: 295 NWLMIIVPIWASAIISFLPM-QIGTFVVGQAMRMDRHL-GPKFEIPIPSI 342
++ I+PI+AS+II FL M Q TF V QA++MD G + IP SI
Sbjct: 320 KSIISIIPIFASSIIGFLAMNQQQTFTVSQALKMDLQFPGTSYLIPPASI 369
|
|
| TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 142/347 (40%), Positives = 211/347 (60%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NETFE+LG G + +YL +N+ A + G ++F T++ AFL D+Y G++
Sbjct: 32 NETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAAFLCDSYFGRY 91
Query: 61 VTI---VLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
T+ ++ LG + + LTA++ L P C E I C GP+ Q+ FL AM L
Sbjct: 92 KTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKE--IGSVCNGPSIGQIMFLAGAMVLLV 149
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VS 176
+G AGGIRPC++PF DQFD +T +G++ I SFFNWY+ TFT +++ T++ YVQ+ VS
Sbjct: 150 IG-AGGIRPCNLPFGADQFDPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLIVYVQSNVS 208
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W+ G IP + + G ++ FAG ++YV V A GS SI +V VVA KKRR L+ VG
Sbjct: 209 WSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRR--LKPVGPN 266
Query: 237 IFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVNW 296
Y SKL T QFRFL+K+AI +D++ +DG ++ +LCS+QQVEEV
Sbjct: 267 ELYNYIASDFKNSKLGHTE-QFRFLDKSAIQTQDDKLNKDGSPVDAWKLCSMQQVEEVKC 325
Query: 297 LMIIVPIWASAIISFLP-MQIGTFVVGQAMRMDRHLGP-KFEIPIPS 341
++ ++P+W SA + +L +Q T+ + Q+++ DR LGP F+IP S
Sbjct: 326 VIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGS 372
|
|
| TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 147/347 (42%), Positives = 212/347 (61%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NETFE+LG G ++ VYL +N+ A A++G +F T + AFL D Y G++
Sbjct: 56 NETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAAFLCDTYFGRY 115
Query: 61 VTI---VLGFLLGMLMVTLTAIVPQLRPPHC-TNEERIHGQCIGPNRNQLAFLHVAMFWL 116
T+ V+ LG ++ LTA VPQL P C T + I C GP+ Q+AFL + + +L
Sbjct: 116 KTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSI---CNGPSGGQIAFLLMGLGFL 172
Query: 117 AVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-V 175
VG AGGIRPC++ F DQF+ +++ G++ I+SFFNWY+ TFT +++ T+V YVQ+ V
Sbjct: 173 VVG-AGGIRPCNLAFGADQFNPKSESGKRGIDSFFNWYFFTFTFAQILSLTLVVYVQSNV 231
Query: 176 SWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKR--RHQLQSV 233
SW G TIP V +F ++ FAG ++YV + A GS + I QV VA KKR + Q
Sbjct: 232 SWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGLKPAKQPW 291
Query: 234 GDGIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEE 293
+ Y PP K SKL T QFRFL+KAAI+ D+++ DG +P +LC++QQVEE
Sbjct: 292 LNLYNYYPP--KYANSKLKYTD-QFRFLDKAAILTPEDKLQPDGKPADPWKLCTMQQVEE 348
Query: 294 VNWLMIIVPIWASAIISFLPM-QIGTFVVGQAMRMDRHLGPK-FEIP 338
V ++ ++PIW ++ I +L + Q T+ V QA++ DR LG F IP
Sbjct: 349 VKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLGSGGFVIP 395
|
|
| TAIR|locus:2147499 AT5G28470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 132/344 (38%), Positives = 200/344 (58%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NE+FE+L S ++ +VYL+ +YN+ ++ W G + LT+ AF++DAY+G+F
Sbjct: 30 NESFEKLASMSLIGNLSVYLMTKYNLGGVFLVNVINIWFGSCNILTLAGAFVSDAYLGRF 89
Query: 61 VTIVLGFL---LGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
T++LG + +GM + LTA +P LRP C + Q P + QL L + LA
Sbjct: 90 WTLLLGSIASFIGMGIFALTAALPSLRPDACIDPSNCSNQ---PAKWQLGVLFSGLGLLA 146
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VS 176
+G AGG+RPC+I F DQFD+ T KG+ + +FFNW+Y +FT+ L+I T V Y+QT +S
Sbjct: 147 IG-AGGVRPCNIAFGADQFDTSTKKGKAHLETFFNWWYFSFTVALVIALTGVVYIQTNIS 205
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W GF IPT CL + G Y+ AEGS+F+ IV+V A KKR+ ++ D
Sbjct: 206 WVIGFVIPTACLALSITTFVIGQHTYICAKAEGSVFADIVKVVTAACKKRK--VKPGSDI 263
Query: 237 IFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVNW 296
FY+ P + L + RF +KA+I+ N +E+ +DG RLCS+QQV+ +
Sbjct: 264 TFYIGPSNDGSPTTLVRDKHRLRFFDKASIVTNPNELNEDGNAKYKWRLCSVQQVKNLKC 323
Query: 297 LMIIVPIWASAIISF-LPMQIGTFVVGQAMRMDRHLGP-KFEIP 338
+ I+P+W + I F L Q + + QAM+MD+ GP F++P
Sbjct: 324 VTAILPVWVTGIACFILTDQQNIYGILQAMQMDKTFGPHNFQVP 367
|
|
| TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 121/350 (34%), Positives = 194/350 (55%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NE FE++ S+G++ +YL+ +Y A W+ ++F ++ AFL+D+Y+G+F
Sbjct: 34 NEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRF 93
Query: 61 VTIVLGFL---LGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
+TI + L LGM+++ LTA++PQ++P C + C +QLA L+ A ++
Sbjct: 94 LTISIASLSSFLGMVLLWLTAMLPQVKPSPC-DPTAAGSHCGSSTASQLALLYSAFALIS 152
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTD-KGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-V 175
+G +GGIRPCS+ F DQ D++ + K + + SFF WYY + + +LI T + Y+Q +
Sbjct: 153 IG-SGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHL 211
Query: 176 SWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGD 235
W GF +P V + +L +YV SLF+ + Q V AYKKR+ L D
Sbjct: 212 GWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKKRKLSLPDHHD 271
Query: 236 GIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDE-IKQDGICMNPRRLCSIQQVEEV 294
+K S++ S + RFLNKA +I N +E I DG +NP RLC+ +VEE+
Sbjct: 272 SFDCYYHMKD---SEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEEL 328
Query: 295 NWLMIIVPIWASAIISFLPMQIGTFVVGQAMRMDRHL---GPKFEIPIPS 341
L+ ++PIW++ I+ + +F + QA MDR L G F++P S
Sbjct: 329 KALIKVIPIWSTGIMMSINTSQSSFQLLQATSMDRRLSRHGSSFQVPAGS 378
|
|
| TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 124/350 (35%), Positives = 197/350 (56%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NE FE++ S+G++ +YL+++Y + W +F+ ++ AFL+D+Y+G+F
Sbjct: 36 NEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAATNFMPLVGAFLSDSYLGRF 95
Query: 61 VTIV---LGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
+TIV L LLGM+++ LTA++PQ++P C + C +QLA L+ A ++
Sbjct: 96 LTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGTN--CSSATSSQLALLYTAFALIS 153
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTD-KGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-V 175
+G +GGIRPCS+ F DQ D++ + K + + SFF WYY + ++ +LI T++ Y+Q +
Sbjct: 154 IG-SGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSSVAVLIAFTVIVYIQDHL 212
Query: 176 SWAWGFTIPTVC-LFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVG 234
W GF IP + L G + +FA +YV SLF+ + QV AY KR L
Sbjct: 213 GWKIGFGIPAILMLLAGFLFVFASP-LYVKRDVSKSLFTGLAQVVAAAYVKRNLTLPDHH 271
Query: 235 DGIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDE-IKQDGICMNPRRLCSIQQVEE 293
D LK S+L S + RFLNKA I N DE + DG+ +N RLC+ QVE+
Sbjct: 272 DSRDCYYRLKD---SELKAPSDKLRFLNKACAISNRDEDLGSDGLALNQWRLCTTDQVEK 328
Query: 294 VNWLMIIVPIWASAIISFLPMQIGTFVVGQAMRMDRHLGPK--FEIPIPS 341
+ L+ ++P+W++ I+ + + +F + QA MDR L F+IP S
Sbjct: 329 LKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRRLSSNSTFQIPAGS 378
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 124/348 (35%), Positives = 193/348 (55%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NE ERL +G+ YL + N A A W+G +I AF+ADAY+G++
Sbjct: 37 NECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRY 96
Query: 61 VTI---VLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI V ++ GM ++TL+A VP L+P +C N + H PN +Q A VA++ +A
Sbjct: 97 WTIATFVFIYVSGMTLLTLSASVPGLKPGNC-NADTCH-----PNSSQTAVFFVALYMIA 150
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-TVS 176
+G GGI+PC F DQFD + + + +SFFNW+Y + + LI +T++ ++Q V
Sbjct: 151 LG-TGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVG 209
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W WGF +PTV + + F G R Y L GS + I QV V A++K ++
Sbjct: 210 WGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL 269
Query: 237 IFYVPPLKKTL-GSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVN 295
+F + + GS+ + + +F +KAA+ +D IK DG +NP RLCS+ QVEE+
Sbjct: 270 LFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIK-DGE-VNPWRLCSVTQVEELK 327
Query: 296 WLMIIVPIWASAII-SFLPMQIGTFVVGQAMRMDRHLGPKFEIPIPSI 342
++ ++P+WA+ I+ + + Q+ T V Q MD+H+G FEIP S+
Sbjct: 328 SIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASL 375
|
|
| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 117/349 (33%), Positives = 187/349 (53%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF 60
NE E+L G A YL + ++ A + G + ++ AF+AD++ G+F
Sbjct: 36 NEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLLGAFIADSFAGRF 95
Query: 61 VTIVLG---FLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117
TI + +GM ++T++AI+P LRPP C EE C+ + QL+ L+VA+ L
Sbjct: 96 WTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEE----VCVVADTAQLSILYVALL-LG 150
Query: 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-TVS 176
G+GGIRPC + F DQFD + ++FNWYY +L+ T++ ++Q V
Sbjct: 151 ALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVG 210
Query: 177 WAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236
W G IPTV +F ++ G ++Y ++ GS F+ ++QV V A++KR+ ++ S
Sbjct: 211 WGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSL 270
Query: 237 IFYVPPLKK--TLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEV 294
+++ + +LG KL T FL+KAAI+ D +K G N RL ++ +VEE+
Sbjct: 271 LYFNDEIDAPISLGGKLTHTK-HMSFLDKAAIVTEEDNLKP-GQIPNHWRLSTVHRVEEL 328
Query: 295 NWLMIIVPIWASAIISFLPM-QIGTFVVGQAMRMDRHLGPKFEIPIPSI 342
++ + PI AS I+ Q GTF + QA M+RHL F+IP S+
Sbjct: 329 KSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSM 377
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 343 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 2e-23 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 5e-07 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 3e-06 | |
| PRK10207 | 489 | PRK10207, PRK10207, dipeptide/tripeptide permease | 0.002 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 2e-23
Identities = 77/288 (26%), Positives = 123/288 (42%), Gaps = 46/288 (15%)
Query: 60 FVTIVLG---FLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWL 116
F TI+LG + +G +++TL AI P L P +A ++ ++ +
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQ------------------VALFYIGLYLI 42
Query: 117 AVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-TV 175
A+G GGI+P F DQFD D R + FF+W+Y + LI + I Y+Q V
Sbjct: 43 ALG-TGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQNV 98
Query: 176 SWAWGFTIPTVCLFCGLVLLFAGMRIY-VLVIAEGSLF-SSIVQVFVVAYKKRRHQLQSV 233
+ GF +P V + L++ G R Y GS F I + A K R+ QL
Sbjct: 99 GYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKD 158
Query: 234 GDGIFYVPPL--KKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQV 291
+++ K+++ T F+ + Q G V
Sbjct: 159 SHWLYWALEKYNKRSISQTKVHTRVAVIFI---PLPKFWALFDQQG------------SV 203
Query: 292 EEVNWLMIIVPIWASAII-SFLPMQIGTFVVGQAMRMDRHLGPKFEIP 338
+ +++++PIWA I+ + Q+ T +V Q MDR + P FEIP
Sbjct: 204 WLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIP 251
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-07
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 31/227 (13%)
Query: 10 FGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLL 69
+G+ I +YLLN ++ + + + +I A +AD+++GKF TI+ L+
Sbjct: 4 YGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLV 63
Query: 70 GML--MVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPC 127
++ + VP L P + L+ + +A L G GGI+PC
Sbjct: 64 YVVGHALASLGAVPSL---------------GHPLHDALSLVGLA---LIALGTGGIKPC 105
Query: 128 SIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIV----AYVQTVS----WAW 179
F DQF+ R R FF+++Y L ++ I V +
Sbjct: 106 VSAFGGDQFEERQLSLR---FRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPL 162
Query: 180 GFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKR 226
F +P + + L++ G ++Y G++ S +++ V A KKR
Sbjct: 163 AFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 46/208 (22%), Positives = 76/208 (36%), Gaps = 37/208 (17%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEY----NVSQAYVAAKFGAWNGVADFLTVIFAFLADAY 56
E +ER +G+ AI +YL + + + F A+ + +I +LAD
Sbjct: 29 VELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRV 88
Query: 57 IGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWL 116
+G TIVLG +L + + AI + + L++ + +
Sbjct: 89 LGTRRTIVLGAILMAIGHLVLAI---------------------SSVSGPGGLYIGLALI 127
Query: 117 AVGGAGGIRPCSIPFAVDQF---DSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYV- 172
VG G +P + + D R D G F +Y + LI I +
Sbjct: 128 IVGT-GLFKPNISSLLGELYPKDDPRRDGG-------FTLFYMGINIGSLIAPIITGLLA 179
Query: 173 QTVSWAWGFTIPTVCLFCGLVLLFAGMR 200
W GF + V + GLV+ G R
Sbjct: 180 INYGWHVGFGLAAVGMIIGLVIFLLGRR 207
|
Length = 498 |
| >gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 2 ETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFV 61
E +ER G +G+ I V+ + + SQ FGA+ + L I ++ D +G
Sbjct: 23 ELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR 82
Query: 62 TIVLGFL---LGMLMVTLTAIVPQL 83
TIVLG + +G M ++ + P L
Sbjct: 83 TIVLGAIVLAIGYFMTGMSLLKPDL 107
|
Length = 489 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 343 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.97 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.97 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.96 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.95 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.59 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.57 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.55 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.53 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.53 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.52 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.52 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.47 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.47 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.46 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.46 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.45 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.45 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.44 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.43 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.43 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.43 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.43 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.42 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.42 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.42 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.41 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.41 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.41 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.41 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.4 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.4 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.4 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.39 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.39 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.39 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.38 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.38 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.38 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.37 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.37 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.35 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.35 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.35 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.34 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.32 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.32 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.32 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.31 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.31 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.3 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.29 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.29 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.29 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.29 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.29 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.28 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.28 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.27 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.27 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.25 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.25 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.25 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.25 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.24 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.24 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.23 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.23 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.23 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.23 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.23 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.23 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.21 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.21 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.21 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.2 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.19 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.19 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.17 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.17 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.17 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.16 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.16 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.15 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.15 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.14 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.14 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.13 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.13 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.13 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.12 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.11 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.11 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.11 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.11 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.11 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.11 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.1 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.09 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.09 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.09 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.09 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.09 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.09 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.08 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.08 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.08 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.05 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.05 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.04 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.03 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.02 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.01 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.0 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.99 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.98 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.98 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.98 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.98 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.98 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.97 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.96 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.95 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.94 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.94 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.94 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.91 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.9 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.89 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.89 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.88 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.87 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.86 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.86 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.85 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.85 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.84 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.82 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.81 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.81 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.8 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.8 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.8 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.79 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.79 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.78 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.77 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.76 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.75 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.75 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.73 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.73 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.73 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.72 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.71 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.7 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.7 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.69 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.68 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.66 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.66 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.63 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.63 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.62 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.62 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.62 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.61 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.58 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.54 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.54 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.54 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.53 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.52 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.52 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.52 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.51 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.5 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.47 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.46 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.45 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.44 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.43 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.42 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.42 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.42 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.41 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.37 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.35 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.34 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.31 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.26 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.25 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.22 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.2 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.2 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.12 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.05 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.98 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.97 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.96 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.91 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 97.81 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.79 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.77 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.75 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 97.74 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.71 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.65 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.64 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.64 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 97.6 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.59 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.56 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.55 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.51 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.46 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.45 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.25 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.2 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.19 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.14 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.05 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.85 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 96.8 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 96.66 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 96.65 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 96.59 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 96.56 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 96.4 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.29 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.13 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 95.9 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 95.82 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.59 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 95.12 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.07 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 94.95 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 94.92 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 94.59 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 94.38 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 94.37 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 93.72 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 93.41 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 92.82 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 92.63 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 91.77 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 91.19 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 90.56 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 90.35 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 90.12 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 89.91 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 87.59 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 85.23 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=431.76 Aligned_cols=334 Identities=39% Similarity=0.621 Sum_probs=298.9
Q ss_pred CchhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHH
Q 044630 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLT 77 (343)
Q Consensus 1 ~e~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~ 77 (343)
+|++||++|||+..||+.|+++++|.+...|+..+++|.+..++.+++|+++||.|+||+++|.++. ++|+.+++++
T Consensus 45 ~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~ 124 (571)
T KOG1237|consen 45 NEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLS 124 (571)
T ss_pred HHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999999999998 7888888999
Q ss_pred hhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHH
Q 044630 78 AIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTT 157 (343)
Q Consensus 78 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~ 157 (343)
+..|.++|++| ........|..++..+...++.++.++++ |.|+.+||+.++++||||+.++++++.+.++|+|+|+.
T Consensus 125 a~~~~l~p~~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~-G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~ 202 (571)
T KOG1237|consen 125 AMIPALLPFMC-KFKPGGNVCESPSKLQLAVLYGALYLIAL-GAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFS 202 (571)
T ss_pred HHhhhcCCccc-cCCCCCCcccCcchHHHHHHHHHHHHhee-ccCCCCCcchhhcccccCccCcchhhCcccchhHHHHH
Confidence 98899999887 22122345888888889999999999999 99999999999999999988888888888999999999
Q ss_pred HHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccceEEEecCCCCchhHHHHHHHHHHHhhcccccCCCCc
Q 044630 158 FTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDG 236 (343)
Q Consensus 158 ~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~ 236 (343)
.|+|.+++.++..|+|+ .||.++|.++++++++++++|+.+.+.|++++|.|+|++.+.+|+++++|||+...+.+++
T Consensus 203 ~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~- 281 (571)
T KOG1237|consen 203 QNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPE- 281 (571)
T ss_pred HHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcch-
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999988776643
Q ss_pred ccccCCcccccCCcCCCCchhhhhhhhhhhccCcccccccCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHhh-c
Q 044630 237 IFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVNWLMIIVPIWASAIISFLPM-Q 315 (343)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~-Q 315 (343)
++ +... .......++ ++++|+|||+++.+.+. .++...+||++|+++||||+|.++|++|+|+..++||+++ |
T Consensus 282 ~~-~~~~--~~~~~~~~t-~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq 355 (571)
T KOG1237|consen 282 EL-YYDC--TDSVAIEGT-KPFRFLDKAALKTSDDL--KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQ 355 (571)
T ss_pred hc-cccc--cccccccCC-cccchhhHhhccCCccc--ccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHh
Confidence 11 1111 011233456 88999999999876443 4566689999999999999999999999999999999999 9
Q ss_pred chhHHHHHHHhcccCCCCCeEeCCCCCC
Q 044630 316 IGTFVVGQAMRMDRHLGPKFEIPIPSIF 343 (343)
Q Consensus 316 ~~t~~~~qa~~md~~~~~~f~ip~a~~~ 343 (343)
+.|++++||.+|||+++++|+|||++++
T Consensus 356 ~~t~~v~Q~~~mdr~~~~~f~ip~asl~ 383 (571)
T KOG1237|consen 356 MVTFFVLQATTMDRHLGSNFKIPAASLQ 383 (571)
T ss_pred hhhheehhhhhcCCCCCCCeEeCchhHH
Confidence 9999999999999999955999999975
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=347.25 Aligned_cols=283 Identities=21% Similarity=0.299 Sum_probs=218.9
Q ss_pred CchhhhHHhhhhhHHHHHHhhHhcC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHH
Q 044630 1 NETFERLGSFGIMAIFTVYLLNEYN----VSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLM 73 (343)
Q Consensus 1 ~e~~e~~~~yg~~~~L~~yl~~~lg----~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~ 73 (343)
+|+||||+||||++.|.+|++.+++ +++++|..++++|+...|+++++|||+|||++|+||++..|. .+|+++
T Consensus 29 vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~ 108 (498)
T COG3104 29 VELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLV 108 (498)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999888 999999999999999999999999999999999999999998 678877
Q ss_pred HHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHH
Q 044630 74 VTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNW 153 (343)
Q Consensus 74 l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~ 153 (343)
++.++. .....+++++.++++ |+|++|||++++++|+|+++||+ |+.+|+.
T Consensus 109 L~~~~~------------------------~~~~gl~i~L~~I~i-G~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~ 159 (498)
T COG3104 109 LAISSV------------------------SGPGGLYIGLALIIV-GTGLFKPNISSLLGELYPKDDPR----RDGGFTL 159 (498)
T ss_pred Hhcccc------------------------ccccHHHHHHHHHHh-ccccccccHHHHHHHhcCCCCcc----cCCCccE
Confidence 665420 124679999999999 99999999999999999999876 8999999
Q ss_pred HHHHHHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccceEEEec--CCCCchhHH------HHHHHHHHH
Q 044630 154 YYTTFTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRIYVLVI--AEGSLFSSI------VQVFVVAYK 224 (343)
Q Consensus 154 ~y~~~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~~~~~~--p~~~~l~~~------~~v~~~a~~ 224 (343)
+|+++|+|++++|.+.+++++ +||+.+|.++++.|.++++.++++++++...+ |+.+|++.- ..+++..++
T Consensus 160 fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (498)
T COG3104 160 FYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILA 239 (498)
T ss_pred EEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHH
Confidence 999999999999999999999 99999999999999999999999999887653 233333211 111111111
Q ss_pred hhcccccCCCCcccccCCcccccCCcCCCCchhhhhh-hhhhhccCcccccccCCCCCCCccccchhHHHHHHHHhHHHH
Q 044630 225 KRRHQLQSVGDGIFYVPPLKKTLGSKLPLTSSQFRFL-NKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVNWLMIIVPI 303 (343)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-d~a~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l 303 (343)
--. +. +... +.+++. -...+... .... .....| ++.+ ||+||+++++|+
T Consensus 240 ~~~-----------~~----------~l~~-~~~~~~~~~~~i~~~---~~~~-~~~~~~---~~~~-~er~r~~~~~~L 289 (498)
T COG3104 240 ALL-----------TL----------LLNQ-NTFSGVLLVISILIA---IIYF-AEAFRS---PKVF-DERRRLLAAIPL 289 (498)
T ss_pred HHH-----------HH----------HHHH-HHHHHHHHHHHHHHH---HHHH-HHHhcc---CccH-HHHHHHHHHHHH
Confidence 000 00 0000 111110 00010000 0000 001122 3345 899999999999
Q ss_pred HHHHHHHHHhh-cchhHHHHHH-HhcccCCCCCeEeCCCCCC
Q 044630 304 WASAIISFLPM-QIGTFVVGQA-MRMDRHLGPKFEIPIPSIF 343 (343)
Q Consensus 304 ~~~~i~f~~~~-Q~~t~~~~qa-~~md~~~~~~f~ip~a~~~ 343 (343)
++..++||++| |++|.+.+|+ +++||+.. ||++||+|+|
T Consensus 290 fl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQ 330 (498)
T COG3104 290 FLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQ 330 (498)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHH
Confidence 99999999999 9999777777 68899977 7999999987
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=341.46 Aligned_cols=274 Identities=24% Similarity=0.419 Sum_probs=233.9
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQL 83 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~ 83 (343)
|+|||+.++|++|+++.+|++++.+..+++.|....++++++||+++|+++||+|++.++. .+|+.++++++..+..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 6899999999999999999999999999999999999999999999999999999999998 5566555554331110
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 044630 84 RPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLL 163 (343)
Q Consensus 84 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ 163 (343)
. ......++++++++++ |.|++|||+.++++|||++++ ++++.++|+|+|+++|+|++
T Consensus 81 ~------------------~~~~~~~l~gLaLia~-G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSl 138 (654)
T TIGR00926 81 H------------------PLHDLLDLLGLALIAL-GTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSL 138 (654)
T ss_pred c------------------chHHHHHHHHHHHHHh-hccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHH
Confidence 0 1134557789999999 999999999999999998643 34699999999999999999
Q ss_pred HHHhhhheeee-c-------cccccchhHHHHHHHHHHHHHhccceEEEecCCCCchhHHHHHHHHHHHhhcccccCCCC
Q 044630 164 ITSTIVAYVQT-V-------SWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGD 235 (343)
Q Consensus 164 ig~~~~~~l~~-~-------gw~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~ 235 (343)
+++++.+++++ + +|..+|+++++++++++++++.++|+|++.+|+++++.++.+++..++|+|+...+.
T Consensus 139 is~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~--- 215 (654)
T TIGR00926 139 ISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE--- 215 (654)
T ss_pred HHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc---
Confidence 99999999984 3 699999999999999999999999999988889999999999999888876432100
Q ss_pred cccccCCcccccCCcCCCCchhhhhhhhhhhccCcccccccCCCCCCCccccchhHHHHHHHHhHHHHHHHHHHHHHhh-
Q 044630 236 GIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVNWLMIIVPIWASAIISFLPM- 314 (343)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~f~~~~- 314 (343)
. ...+|+|+++... .+++|||+|++++++++++..++||+++
T Consensus 216 ------------------~-~~~~~ld~a~~~~------------------~~~~V~evkrll~il~l~i~~~ifw~~~~ 258 (654)
T TIGR00926 216 ------------------H-WPLHWLDYAKDKH------------------DIRMIRSTKRLLRVLVLFIPLPMFWALFD 258 (654)
T ss_pred ------------------c-cchhHHHHhcccc------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 1247888876421 3568999999999999999999999999
Q ss_pred cchhHHHHHHHhcccCCCCCeEeCCCCCC
Q 044630 315 QIGTFVVGQAMRMDRHLGPKFEIPIPSIF 343 (343)
Q Consensus 315 Q~~t~~~~qa~~md~~~~~~f~ip~a~~~ 343 (343)
|++|++++|+++||++++ ++++||+++|
T Consensus 259 Q~~s~~~~qa~~m~~~l~-g~~ip~~~lq 286 (654)
T TIGR00926 259 QQGSRWTLQATRMDGDVG-GFEIQPDQMQ 286 (654)
T ss_pred cchhHHHHHHHHhcCccC-CEecCHHHHH
Confidence 999999999999999998 8999999875
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=276.89 Aligned_cols=279 Identities=18% Similarity=0.285 Sum_probs=202.1
Q ss_pred CchhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHH
Q 044630 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLT 77 (343)
Q Consensus 1 ~e~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~ 77 (343)
.|++||++||++..+++.|+++++|++..+++.+.+.+....+++++++|+++||++||||++.++. .+|.+++...
T Consensus 17 ~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~ 96 (493)
T PRK15462 17 LQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999999999999999999999999999999999999999999779999999887 3343322211
Q ss_pred hhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHH
Q 044630 78 AIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTT 157 (343)
Q Consensus 78 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~ 157 (343)
+ .....+++++.++++ |.|..+|+.+++++|+|+++|+ +|+++++++|+.
T Consensus 97 ---~----------------------~~~~~~~l~l~li~i-G~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~ 146 (493)
T PRK15462 97 ---E----------------------IHPSFLYLSLAIIVC-GYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAA 146 (493)
T ss_pred ---h----------------------cchhHHHHHHHHHHH-hcccccccHHHHHHHHCCCCCc----cccceehHHHHH
Confidence 1 012335566777788 9999999999999999987653 388999999999
Q ss_pred HHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccceEEEecC-CCCchhH--HHHHH-----HHH-----H
Q 044630 158 FTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIA-EGSLFSS--IVQVF-----VVA-----Y 223 (343)
Q Consensus 158 ~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p-~~~~l~~--~~~v~-----~~a-----~ 223 (343)
+|+|++++|.+.+++.+ .||+.+|.++++.+++++++++.+++++.+..+ +.+|.++ ..... ... .
T Consensus 147 ~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (493)
T PRK15462 147 GNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPAL 226 (493)
T ss_pred HHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 999999999999999999999888877654321 1233321 00000 000 0
Q ss_pred HhhcccccCCCCcccccCCcccccCCcCCCCchhhhhhhhhhhccCcccccccCCCCCCCccccchhHHHHHHHHhHHHH
Q 044630 224 KKRRHQLQSVGDGIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVNWLMIIVPI 303 (343)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l 303 (343)
..... . + .+.+....... ...........+ +..+.||+||+..++++
T Consensus 227 ~~~~~----------~----------------~--~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~er~r~~~~~~l 273 (493)
T PRK15462 227 ITVLF----------W----------------K--EWSVYALIVAT---IIGLGVLAKIYR--KAENQKQRKELGLIVTL 273 (493)
T ss_pred HHHHH----------H----------------H--HHHHHHHHHHH---HHHHHHHHHHHH--hcCCHHHHhhHHHHHHH
Confidence 00000 0 0 00000000000 000000000000 11234789999999999
Q ss_pred HHHHHHHHHhh-cchh-HHHHHHHhcccCCCCCeEeCCCCCC
Q 044630 304 WASAIISFLPM-QIGT-FVVGQAMRMDRHLGPKFEIPIPSIF 343 (343)
Q Consensus 304 ~~~~i~f~~~~-Q~~t-~~~~qa~~md~~~~~~f~ip~a~~~ 343 (343)
++..++||+.| |++| ..++..+++||+++ ||++||+|+|
T Consensus 274 ~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~q 314 (493)
T PRK15462 274 TFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQ 314 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHH
Confidence 99999999999 9999 56666689999999 8999999987
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=261.31 Aligned_cols=278 Identities=18% Similarity=0.268 Sum_probs=200.8
Q ss_pred CchhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHH
Q 044630 1 NETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLT 77 (343)
Q Consensus 1 ~e~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~ 77 (343)
.|++||++||++.+++++|+++++|++.++++.+++.+....++.++++|+++||++||||++.++. .+|.+++.++
T Consensus 22 ~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~ 101 (489)
T PRK10207 22 VELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS 101 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999999999999999999999999999999999999999999669999999998 3444433322
Q ss_pred hhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHH
Q 044630 78 AIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTT 157 (343)
Q Consensus 78 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~ 157 (343)
++ ....+++++.++++ |.|.++|+..++++|+|+++++ +|++.++++|++
T Consensus 102 ---~~----------------------~~~ll~~~~~l~~i-g~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~ 151 (489)
T PRK10207 102 ---LL----------------------KPDLIFIALGTIAV-GNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMS 151 (489)
T ss_pred ---cc----------------------chhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCch----hhhcchhHHHHH
Confidence 10 12346678999999 9999999999999999987642 367889999999
Q ss_pred HHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccceEEEec--CCCCchh--HHHHHH------HHHHHhh
Q 044630 158 FTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRIYVLVI--AEGSLFS--SIVQVF------VVAYKKR 226 (343)
Q Consensus 158 ~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~~~~~~--p~~~~l~--~~~~v~------~~a~~~~ 226 (343)
+|+|+++||.+++++.+ .||+++|+++++.++++++.+..+++++++.+ |++++.. ...... ..... .
T Consensus 152 ~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~-~ 230 (489)
T PRK10207 152 INIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCA-W 230 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHH-H
Confidence 99999999999999999 99999999998888888888888877766532 3333321 111000 00100 0
Q ss_pred cccccCCCCcccccCCcccccCCcCCCCchhhhhhhhhhhccCcccccccCCCCCCCccccchhHHHHHHHHhHHHHHHH
Q 044630 227 RHQLQSVGDGIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVNWLMIIVPIWAS 306 (343)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~ 306 (343)
..... +. . .. .+-.+.+.. ...+ -++..+.+ .+++++.+..+++++.
T Consensus 231 ~~~~~-~~----------~----------~~--~~~~~~~i~-------~~~f--~~~~~~~~-~~~r~r~~~~~~l~~~ 277 (489)
T PRK10207 231 LMHNV-EV----------A----------NL--VLIVLSIVV-------TIIF--FREAFKLD-KTGRNKMFVAFVLMLE 277 (489)
T ss_pred HHhhh-hH----------H----------HH--HHHHHHHHH-------HHHH--HHHHhcCC-HHHHHHHHHHHHHHHH
Confidence 00000 00 0 00 000000000 0000 00000222 3567888889999999
Q ss_pred HHHHHHhh-cchhHHHHHHH-hcccCCCCCeEeCCCCCC
Q 044630 307 AIISFLPM-QIGTFVVGQAM-RMDRHLGPKFEIPIPSIF 343 (343)
Q Consensus 307 ~i~f~~~~-Q~~t~~~~qa~-~md~~~~~~f~ip~a~~~ 343 (343)
.++||.++ |+.+...+|+. ++|+++. |+++||+++|
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~ 315 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQ 315 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHH
Confidence 99999999 99887777776 7999888 8999998764
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=259.47 Aligned_cols=282 Identities=18% Similarity=0.281 Sum_probs=202.9
Q ss_pred CchhhhHHhhhhhHHHHHHhhHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHH
Q 044630 1 NETFERLGSFGIMAIFTVYLLNE--YNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVT 75 (343)
Q Consensus 1 ~e~~e~~~~yg~~~~L~~yl~~~--lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~ 75 (343)
.|++||++||++.+++++|++++ +|++..+++.+++.+.+..+++++++|+++||++||||++.++. .+|.+++.
T Consensus 18 ~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~ 97 (475)
T TIGR00924 18 VELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999988 99999999999999999999999999999999669999999987 33333222
Q ss_pred HHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHH
Q 044630 76 LTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYY 155 (343)
Q Consensus 76 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y 155 (343)
++ + +.+.+++++.+.++ |.|+.+|+..++++|++++++++ +|+++++++|
T Consensus 98 ~~---~-----------------------~~~~~~~~~~l~g~-g~g~~~~~~~~~~a~~~~~~~~~---~r~~~~~~~~ 147 (475)
T TIGR00924 98 MS---I-----------------------YPDLIFYGLGTIAV-GSGLFKANPSSMVGKLYERGDMP---RRDGGFTLFY 147 (475)
T ss_pred hc---c-----------------------cHhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCCcc---cccceehhHH
Confidence 21 1 24567778889999 99999999999999999865422 3788999999
Q ss_pred HHHHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccceEEEecCCCCchhHHHH-----------HHHHHH
Q 044630 156 TTFTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQ-----------VFVVAY 223 (343)
Q Consensus 156 ~~~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~l~~~~~-----------v~~~a~ 223 (343)
++.|+|+++|+.+++++.+ .||+++|.++++.+++++++++..++.+++.++++++.++..+ .+...+
T Consensus 148 ~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (475)
T TIGR00924 148 MSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVF 227 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999 8999999999988888888888888777655444433321100 000001
Q ss_pred HhhcccccCCCCcccccCCcccccCCcCCCCchhhhhhhhhhhccCcccccccCCCCCCCccccchhHHHHHHHHhHHHH
Q 044630 224 KKRRHQLQSVGDGIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVNWLMIIVPI 303 (343)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l 303 (343)
+..... ... +. . . ....-...++.++. . +. ..+| +.+++ |+++..+++++
T Consensus 228 ~~~~~~-~~~-----~~----~--------~-~~~~~~~~~~~~~~-~---~~--~~~~----~~~~~-~~~~~~~~l~l 277 (475)
T TIGR00924 228 FCAWLM-HHV-----VI----A--------N-ILLMTVTLAVIIFF-F---RL--AFKP----RLDAV-ARNKMYAYIVL 277 (475)
T ss_pred HHHHHH-hcc-----HH----H--------H-HHHHHHHHHHHHHH-H---HH--HHhc----cCCHH-HHhHHHHHHHH
Confidence 100000 000 00 0 0 00000011111110 0 00 0011 12344 45556779999
Q ss_pred HHHHHHHHHhh-cchh-HHHHHHHhcccCCCCCeEeCCCCCC
Q 044630 304 WASAIISFLPM-QIGT-FVVGQAMRMDRHLGPKFEIPIPSIF 343 (343)
Q Consensus 304 ~~~~i~f~~~~-Q~~t-~~~~qa~~md~~~~~~f~ip~a~~~ 343 (343)
++..++||++| |+.| ..++|+++||++++ ++++|++++|
T Consensus 278 ~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~ 318 (475)
T TIGR00924 278 FLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQ 318 (475)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHH
Confidence 99999999999 9999 56778889999999 8999999875
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-28 Score=240.40 Aligned_cols=279 Identities=16% Similarity=0.239 Sum_probs=197.4
Q ss_pred chhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHh
Q 044630 2 ETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTA 78 (343)
Q Consensus 2 e~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~ 78 (343)
|++||++||++..+++.|+++++|++.++++.+.+.+....+..++++|+++||++|||+++.++. .+|..++.++
T Consensus 30 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~- 108 (500)
T PRK09584 30 ELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS- 108 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-
Confidence 789999999999999999999999999999999999988888888999999999559999999887 3333332221
Q ss_pred hcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHH
Q 044630 79 IVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTF 158 (343)
Q Consensus 79 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~ 158 (343)
+ ...+.+++++.+.++ |.|..+|+..++++|+|+++++ ++++.++++|++.
T Consensus 109 --~----------------------~~~~~l~~~~~l~gi-g~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~ 159 (500)
T PRK09584 109 --G----------------------HDAGIVYMGMATIAV-GNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSI 159 (500)
T ss_pred --c----------------------ccHHHHHHHHHHHHH-hhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHH
Confidence 1 123456778889999 9999999999999999986532 3667899999999
Q ss_pred HHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccceEEEe--cCCCCchhH------HHHHHHHHHHhhccc
Q 044630 159 TLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRIYVLV--IAEGSLFSS------IVQVFVVAYKKRRHQ 229 (343)
Q Consensus 159 ~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~~~~~--~p~~~~l~~------~~~v~~~a~~~~~~~ 229 (343)
|+|+++||.+.+++.+ .||+++|.++++.++++++.++..++.+++. +|+++|... ...+...........
T Consensus 160 ~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (500)
T PRK09584 160 NIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLL 239 (500)
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999988888888777766655543 233333221 111111111111000
Q ss_pred ccCCCCcccccCCcccccCCcCCCCchhhhhhhhhhhccCcccccccCCCCCCCccccchhHHHHHHHHhHHHHHHHHHH
Q 044630 230 LQSVGDGIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRLCSIQQVEEVNWLMIIVPIWASAII 309 (343)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~ 309 (343)
. +++ ... +...+......... ..+.+..++ +|+|+++..+++++..++
T Consensus 240 -~-~~~--~~~---------------~~~~~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~~~~i~ 287 (500)
T PRK09584 240 -H-NQE--IAR---------------MALGVVALGIVVIF------------GKEAFAMKG-AARRKMIVAFILMLEAII 287 (500)
T ss_pred -h-cch--HHH---------------HHHHHHHHHHHHHH------------HHHHhhcCH-HHHHHHHHHHHHHHHHHH
Confidence 0 000 000 00000000000000 000012233 567777788999999999
Q ss_pred HHHhh-cchhHHHHHH-HhcccCCCCCeEeCCCCCC
Q 044630 310 SFLPM-QIGTFVVGQA-MRMDRHLGPKFEIPIPSIF 343 (343)
Q Consensus 310 f~~~~-Q~~t~~~~qa-~~md~~~~~~f~ip~a~~~ 343 (343)
||+++ |+.+....|+ +++|+++. |+++|++++|
T Consensus 288 f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~ 322 (500)
T PRK09584 288 FFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQ 322 (500)
T ss_pred HHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHH
Confidence 99999 9999888887 56899998 8999988764
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-29 Score=240.77 Aligned_cols=248 Identities=32% Similarity=0.559 Sum_probs=168.8
Q ss_pred HHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccC
Q 044630 60 FVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQF 136 (343)
Q Consensus 60 ~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~ 136 (343)
+|+++++. ++|++++++++..+.. +++.+.+.++++++++++ |+|++|||+.++++|||
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~-----------------~~~~~~~~~~~gL~lia~-G~G~~K~ni~~~~~dq~ 62 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL-----------------PSGIQLGLFYIGLALIAV-GTGGIKPNISPFGADQY 62 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-----------------------CHHHHHHHHHHH-HHHCCHHHHHHHHHHCS
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh-----------------hhhHHHHHHHHHHHHHHh-ccccccccHHHHHHHHh
Confidence 58888887 8899988888763321 123457889999999999 99999999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccceEEEe-cCCCCchhH
Q 044630 137 DSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRIYVLV-IAEGSLFSS 214 (343)
Q Consensus 137 ~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~~~~~-~p~~~~l~~ 214 (343)
++++ +++++++|+|||+++|+|++++..+.+|+++ +||.++|+++++++++++++|+.++++|++. +|.++++.+
T Consensus 63 ~~~~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~ 139 (372)
T PF00854_consen 63 DEDD---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTN 139 (372)
T ss_dssp STTT---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S-
T ss_pred cccc---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccch
Confidence 9764 2369999999999999999999999999999 9999999999999999999999999999998 678888888
Q ss_pred -HHHHHHHHHHhhcccccCCCCcccccCCcccccCCcCCCCchhhhhhhhhhhccCcccccccCCCCCCCc-cccchhHH
Q 044630 215 -IVQVFVVAYKKRRHQLQSVGDGIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRR-LCSIQQVE 292 (343)
Q Consensus 215 -~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~-~~~~~~ve 292 (343)
...++..+.+++....|.... ..++..... ...... +.....+.+.+... + ...|+ .|+++++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~ 205 (372)
T PF00854_consen 140 FIKLVLVAAFKKRKLAVPKGSS-WLDWALFQY-SERSIF---GIIVFIRAAVIFFP-E--------IFFWALFCQVQRVE 205 (372)
T ss_dssp -SHHHHHHHHHHHCCCH-HHHH-HHHHHHHHH-CCCCCC---CCCCHHHHHHHHCC-C--------HHHHTTTSSTTTHH
T ss_pred hHHHHHHHHHHHhhcccccchH-HHHHhhhhh-hhhhhh---hhhhhccchhhhhh-h--------hhhcccCCccceee
Confidence 555666666666655432110 011100000 000000 01111111122111 1 01121 26788999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhh-cchhHHHHHHHhcccCCCCC-eEeCCCCCC
Q 044630 293 EVNWLMIIVPIWASAIISFLPM-QIGTFVVGQAMRMDRHLGPK-FEIPIPSIF 343 (343)
Q Consensus 293 ~~k~~~~~l~l~~~~i~f~~~~-Q~~t~~~~qa~~md~~~~~~-f~ip~a~~~ 343 (343)
+.|.+.+.+|++...++|+..+ |..++.+.|..+||+.++ + +++|++++|
T Consensus 206 ~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~ 257 (372)
T PF00854_consen 206 ELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQ 257 (372)
T ss_dssp HCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGT
T ss_pred eeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-cccccccchhh
Confidence 9999999999999999999999 999999999999999999 6 999999986
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-15 Score=144.86 Aligned_cols=173 Identities=15% Similarity=0.203 Sum_probs=134.2
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCccccccccCCC
Q 044630 23 EYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGP 101 (343)
Q Consensus 23 ~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~ 101 (343)
.+|+++...+++.+++.....+++++.|+++||| .|++++.+|. +.+...+ .+++
T Consensus 62 ~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~~Av~-~~~f---------------------- 117 (493)
T KOG1330|consen 62 YFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWTLAVF-ASGF---------------------- 117 (493)
T ss_pred hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHHHHHH-HHHH----------------------
Confidence 5899999999999999999999999999999997 9999999887 3333322 2222
Q ss_pred CcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee--ccccc
Q 044630 102 NRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT--VSWAW 179 (343)
Q Consensus 102 ~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~--~gw~~ 179 (343)
....+.+.+.+.+.|+ |.+.+.|..+++++|.|+++ +|++.++|||+++++|+.+|.+.++++.+ ..||+
T Consensus 118 -s~~Fwq~~l~R~~vGi-GeAs~~~ia~s~IaD~f~~~------~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~ 189 (493)
T KOG1330|consen 118 -SNHFWQVLLCRGFVGI-GEASYSPIAPSLIADSFPDD------KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRW 189 (493)
T ss_pred -HHHHHHHHHHHHHhcc-chhhhcccchhHhhhcCcch------hhhHHHHHhhhhcccccceeEEeeeeeccCccceEE
Confidence 1257889999999999 99999999999999999875 39999999999999999999999999988 45999
Q ss_pred cchhHHHHHHHHHHH-HHhcc-ceEEE-ecCC-----CCchhHHHHHHHHHHHhhc
Q 044630 180 GFTIPTVCLFCGLVL-LFAGM-RIYVL-VIAE-----GSLFSSIVQVFVVAYKKRR 227 (343)
Q Consensus 180 ~F~i~~~~~~l~~~~-~~~~~-~~~~~-~~p~-----~~~l~~~~~v~~~a~~~~~ 227 (343)
+|.+.+++.++..++ +++.+ |+... .+-+ .+|.+...|-++...|++.
T Consensus 190 af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v 245 (493)
T KOG1330|consen 190 AFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKV 245 (493)
T ss_pred EEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCc
Confidence 999988877665444 44333 22211 1111 1346666666666666443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-14 Score=137.03 Aligned_cols=162 Identities=14% Similarity=0.199 Sum_probs=127.3
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCC
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQ 82 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~ 82 (343)
++-.++++.+.+.++.|+++++|++..+.+.+.+.+.....+..++.|+++|| +|||+++.++.++..+...+..+.+
T Consensus 17 ~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~~~~~~~~~~~~- 94 (395)
T PRK10054 17 LLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAFASGFIAIPLVN- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHHHh-
Confidence 45677888889999999999999999999999999999999999999999999 5999999887722111111122211
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
+.+.+++.+.+.+. +.+...+...+..+|.++++ +|++.+++.+...|+|.
T Consensus 95 ----------------------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~lg~ 145 (395)
T PRK10054 95 ----------------------NVTLVVLFFALINC-AYSVFSTVLKAWFADNLSST------SKTKIFSLNYTMLNIGW 145 (395)
T ss_pred ----------------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHh------HHHHHHHHHHHHHHHHH
Confidence 34455556667777 77777888888888888643 38899999999999999
Q ss_pred HHHHhhhheeeeccccccchhHHHHHHHHHHHH
Q 044630 163 LITSTIVAYVQTVSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 163 ~ig~~~~~~l~~~gw~~~F~i~~~~~~l~~~~~ 195 (343)
++||.+.+++.+.+|+..|.+.+++.+++++..
T Consensus 146 ~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 146 TVGPPLGTLLVMQSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 999999998766889999998887776665443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.6e-14 Score=132.14 Aligned_cols=161 Identities=22% Similarity=0.390 Sum_probs=130.2
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCC
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQ 82 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~ 82 (343)
++..++.......++.++.+++|.+..+.+.+.+++.....++.+++|+++||+ ||||++.++.++..+...+..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~- 83 (352)
T PF07690_consen 6 FLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAFAS- 83 (352)
T ss_dssp HHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhhhh-
Confidence 345556666666777688899999999999999999999999999999999995 999988888722111111111212
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
+.+.+++++++.|+ |.+...+...+++.|.+++++ |++.+++...+.++|.
T Consensus 84 ----------------------~~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~ 134 (352)
T PF07690_consen 84 ----------------------NFWLLLIARFLLGI-GSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGS 134 (352)
T ss_dssp ----------------------CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHH
T ss_pred ----------------------hHHHHhhhcccccc-ccccccccccccccccchhhh------hhhccccccchhhhhh
Confidence 24578889999999 999999999999999998753 8899999999999999
Q ss_pred HHHHhhhheeee-ccccccchhHHHHHHHHHHH
Q 044630 163 LITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 163 ~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~ 194 (343)
++++.+.+++.+ .||+..|.+.++..+++.++
T Consensus 135 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 135 ILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhccccccccccccchhhhhhhh
Confidence 999999999988 99999999999888877664
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=133.55 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=123.1
Q ss_pred hhHHhhhhhHHHHHH--------hhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 044630 5 ERLGSFGIMAIFTVY--------LLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTL 76 (343)
Q Consensus 5 e~~~~yg~~~~L~~y--------l~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~ 76 (343)
--+++|+..+.+... +.+++|.+..+++..++++..+..++.+++|+++||+ |||+++..+..+..+...+
T Consensus 19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~ 97 (413)
T PRK15403 19 MALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAA 97 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHH
Confidence 345666766666543 3457899999999999999999999999999999995 9999998887221111122
Q ss_pred HhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHH
Q 044630 77 TAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYT 156 (343)
Q Consensus 77 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~ 156 (343)
....+ +.+.+++++++.|+ |.+...+...+...|.++++ ++.+.++++..
T Consensus 98 ~~~a~-----------------------~~~~l~~~r~l~Gi-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 147 (413)
T PRK15403 98 TLFTT-----------------------SMTQFLIARFIQGT-SICFIATVGYVTVQEAFGQT------KGIKLMAIITS 147 (413)
T ss_pred HHHcC-----------------------CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHH
Confidence 22211 46678889999999 88876666677888888753 26778889999
Q ss_pred HHHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHH
Q 044630 157 TFTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 157 ~~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
..++|..+||.+++++.+ .||++.|.+.++..+++++..+
T Consensus 148 ~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 148 IVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888 8999999988877666655433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=129.80 Aligned_cols=164 Identities=14% Similarity=0.102 Sum_probs=128.9
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH---HHHHHHHHHhh
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFL---LGMLMVTLTAI 79 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~---~g~~~l~~~~~ 79 (343)
++..++.......++.|..+ ++.+..+.+.+.+++.....++.++.|+++||+ ||||++..+.. ++.++......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~ 86 (365)
T TIGR00900 9 LISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLPFVAL 86 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666677777765 799999999999999999999999999999995 99999998862 22222222211
Q ss_pred cCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHH
Q 044630 80 VPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFT 159 (343)
Q Consensus 80 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~ 159 (343)
.+ ..+.+.+++++.+.|+ +.+...+...++++|.++++ +|++.++++..+.+
T Consensus 87 ~~---------------------~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 138 (365)
T TIGR00900 87 LG---------------------GLNIWQVYVLAGILAI-AQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRS 138 (365)
T ss_pred cC---------------------CCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHH
Confidence 00 1246778888999999 99999999999999998753 38899999999999
Q ss_pred HHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHH
Q 044630 160 LVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 160 iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
+|.++|+.+.+++.+ .||+..|.+.++..+++.+..+
T Consensus 139 ~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 139 LFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888 9999999988776666554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=132.91 Aligned_cols=161 Identities=14% Similarity=0.194 Sum_probs=131.6
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCC
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQ 82 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~ 82 (343)
++-+++++.+.+.++.|+++++|++..+.+.+.+.......+..+++|+++||+ |||+++.++..+..+........+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~~~~~~~- 97 (400)
T PRK11646 20 MLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFATMAIAH- 97 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHHHHHHhc-
Confidence 456788899999999999999999999999999999999999999999999995 999999988722222222222211
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
+.+.+++.+.+.|+ +.|...|...+++.|.++++ +|++++++.+...++|.
T Consensus 98 ----------------------~~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~g~ 148 (400)
T PRK11646 98 ----------------------EPWLLWLSCILSGL-GGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQDSAGA 148 (400)
T ss_pred ----------------------cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHH
Confidence 35677888889999 88888899999999988653 38899999999999999
Q ss_pred HHHHhhhheeeeccccccchhHHHHHHHHHHH
Q 044630 163 LITSTIVAYVQTVSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 163 ~ig~~~~~~l~~~gw~~~F~i~~~~~~l~~~~ 194 (343)
.+|+.+++++.+.||+..|.+.++..+++.++
T Consensus 149 ~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 149 VIGALLGSWLLQYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999887789999999887766555443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-13 Score=129.97 Aligned_cols=149 Identities=11% Similarity=-0.001 Sum_probs=112.3
Q ss_pred HHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 044630 14 AIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEER 93 (343)
Q Consensus 14 ~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~ 93 (343)
......+.+++|++..+.+.+.+.+..+..++.+++|+++||+ |||+++..+........ +.....
T Consensus 11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~-~~~~~~------------ 76 (368)
T TIGR00903 11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAA-GRLLDP------------ 76 (368)
T ss_pred HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH-HHHHHh------------
Confidence 3344555678999999999999999999999999999999995 99987665442222111 111100
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 94 IHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
.+...+++++++.|+ |.|.. ++..+..+|.++++ +|++..+++..+.++|..+++.+++++.
T Consensus 77 ----------~~~~~l~~~R~l~G~-g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~ 138 (368)
T TIGR00903 77 ----------FNYEWLLACQLLAAL-GQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIY 138 (368)
T ss_pred ----------ccHHHHHHHHHHHHh-HhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 146788899999999 99864 45555568888743 3899999999999999999999999998
Q ss_pred e-ccccccchhHHHHHHHHHHH
Q 044630 174 T-VSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 174 ~-~gw~~~F~i~~~~~~l~~~~ 194 (343)
+ .|||..|.+.+++.++..++
T Consensus 139 ~~~gWr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 139 TAGGLQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HccchHHHHHHHHHHHHHHHHH
Confidence 8 99999998866654444333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-13 Score=127.85 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=118.3
Q ss_pred HhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH---HHHHHHHHHhhcCCCC
Q 044630 8 GSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFL---LGMLMVTLTAIVPQLR 84 (343)
Q Consensus 8 ~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~---~g~~~l~~~~~~~~~~ 84 (343)
+.......++.|+.+++|+|..+.+.+.+++.....++.+++|+++||+ ||||.+..+.+ ++.+...+....+..
T Consensus 30 ~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~- 107 (392)
T PRK12382 30 TVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLAGLAYLLAAILPVS- 107 (392)
T ss_pred HHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHHHHHHHhhhccccc-
Confidence 3444456677789999999999999999999999999999999999995 99999988762 222111122211110
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLI 164 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~i 164 (343)
...+.+.+++++.+.|+ |.+...+...+++.|.++++ +|+++++++..+.++|..+
T Consensus 108 -----------------~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~~g~~~ 163 (392)
T PRK12382 108 -----------------APFKFALLVVGRLILGF-GESQLLTGALTWGLGLVGPK------HSGKVMSWNGMAMYGALAA 163 (392)
T ss_pred -----------------hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCcc------ccchhhhHHHHHHHHHHHH
Confidence 01246778889999999 99988888888888988654 2788899988999999999
Q ss_pred HHhhhheeee-ccccccchhHHHH
Q 044630 165 TSTIVAYVQT-VSWAWGFTIPTVC 187 (343)
Q Consensus 165 g~~~~~~l~~-~gw~~~F~i~~~~ 187 (343)
|+.+++++.+ .||+..+.+..+.
T Consensus 164 g~~~~~~l~~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 164 GAPLGLLLHSHFGFAALALTTMVL 187 (392)
T ss_pred HHHHHHHHHhccChHHHHHHHHHH
Confidence 9999999888 8999876655443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.3e-13 Score=128.78 Aligned_cols=147 Identities=12% Similarity=0.141 Sum_probs=118.4
Q ss_pred HHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccc
Q 044630 18 VYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQ 97 (343)
Q Consensus 18 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~ 97 (343)
..+.+++|++..+.+...+.+.....++.++.|+++||+ ||||.+..+..+..+......+.+
T Consensus 33 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---------------- 95 (390)
T PRK03545 33 SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFIASHVLSALAW---------------- 95 (390)
T ss_pred HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence 456678999999999999999999999999999999995 999999988722222112222212
Q ss_pred cCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-cc
Q 044630 98 CIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VS 176 (343)
Q Consensus 98 ~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~g 176 (343)
+.+.+++++++.|+ +.+...+...+++.|.++++ +|++.++++..+.++|..+++.+.+++.+ .|
T Consensus 96 -------~~~~l~~~r~~~G~-~~~~~~~~~~~~i~~~~~~~------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g 161 (390)
T PRK03545 96 -------NFTVLLISRIGIAF-AHAIFWSITASLAIRVAPAG------KKAQALSLLATGTALAMVLGLPLGRVIGQYLG 161 (390)
T ss_pred -------cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCChh------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 46778888999999 88888888899999998754 38889999999999999999999999888 89
Q ss_pred ccccchhHHHHHHHHHHHH
Q 044630 177 WAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 177 w~~~F~i~~~~~~l~~~~~ 195 (343)
|++.|.+.++..++..+..
T Consensus 162 w~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 162 WRTTFLAIGGGALITLLLL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999887665554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.3e-13 Score=125.78 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=119.8
Q ss_pred HHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccc
Q 044630 18 VYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQ 97 (343)
Q Consensus 18 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~ 97 (343)
.++.+++|.+..+.+.+.+.+..+..++.+++|+++||+ |||+.+..+..+..+...+....+
T Consensus 29 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~---------------- 91 (385)
T TIGR00710 29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFALSSLGLALSN---------------- 91 (385)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHHHHHHc----------------
Confidence 345678999999999999999999999999999999995 999999988722222112222211
Q ss_pred cCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-cc
Q 044630 98 CIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VS 176 (343)
Q Consensus 98 ~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~g 176 (343)
+.+.+++.+++.|+ +.+...+...+++.|.++++ +|++.+++.+...++|..+++.+.+++.+ .+
T Consensus 92 -------~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 157 (385)
T TIGR00710 92 -------NIETLLVLRFVQAF-GASAGSVISQALVRDIYPGE------ELSRIYSILMPVLALAPAVAPLLGGYILVWLS 157 (385)
T ss_pred -------cHHHHHHHHHHHHc-chhHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35677888999999 99999999999999998753 38889999999999999999999999888 89
Q ss_pred ccccchhHHHHHHHHHHHHHh
Q 044630 177 WAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 177 w~~~F~i~~~~~~l~~~~~~~ 197 (343)
|+..|.+.++..++..+..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 158 WHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999887766655554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=125.98 Aligned_cols=145 Identities=13% Similarity=0.204 Sum_probs=113.8
Q ss_pred hhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 044630 20 LLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTNEERIHGQC 98 (343)
Q Consensus 20 l~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~ 98 (343)
+.+++|++..+.+...+.+..+..++.++.|.++||+ ||||.+.++. ..+...+ .....+
T Consensus 39 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~-~~~~~~----------------- 99 (406)
T PRK15402 39 VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCL-AILLAQ----------------- 99 (406)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHH-HHHHHc-----------------
Confidence 4578999999999999999999999999999999995 9999998887 2222211 122211
Q ss_pred CCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-ccc
Q 044630 99 IGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VSW 177 (343)
Q Consensus 99 ~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~gw 177 (343)
+.+.+++.+++.|+ +.+...+...+.+.|.++++ ++.+..++.+....+|..++|.+.+++.+ .+|
T Consensus 100 ------~~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w 166 (406)
T PRK15402 100 ------SIEQFTLLRFLQGI-GLCFIGAVGYAAIQESFEEA------DAIKITALMANVALLAPLLGPLVGAALIHVLPW 166 (406)
T ss_pred ------cHHHHHHHHHHHHh-HhhhHHHHHHHHHHHHhChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 35667788899999 98888888889999998754 26677778777788899999999998888 899
Q ss_pred cccchhHHHHHHHHHHHHH
Q 044630 178 AWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 178 ~~~F~i~~~~~~l~~~~~~ 196 (343)
+..|.+.++..+++.+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK15402 167 RGMFVLFAALAALSFFGLW 185 (406)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 9999988777666555433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=124.11 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=119.8
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCC
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQ 82 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~ 82 (343)
+-.+++......++.|+.+++|.+..+.+.+.+.+.....+..++.|.++||+ ||||.+.+.. .+..+...+.+..+
T Consensus 8 ~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~- 85 (375)
T TIGR00899 8 LTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFAWNR- 85 (375)
T ss_pred HHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHHhcc-
Confidence 44567777888899999999999999999999999999999999999999995 9988766543 22222111222211
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
+.+.+++.+.+.+. +.+...|...++..|..++++ +.+....++.....++|.
T Consensus 86 ----------------------~~~~l~~~~~~~g~-~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~ 138 (375)
T TIGR00899 86 ----------------------NYFLLLVLGVLLSS-FASTANPQLFALAREHADRTG----REAVMFSSVMRAQISLAW 138 (375)
T ss_pred ----------------------hHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHHhHHH
Confidence 34556666777777 667777777777777654321 112233567777889999
Q ss_pred HHHHhhhheeee-ccccccchhHHHHHHHHHHHHHh
Q 044630 163 LITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 163 ~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
.+|+.+++++.+ .||+..|.+.++..++..++.+.
T Consensus 139 ~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 139 VIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 99999999988876655544433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=127.91 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=118.4
Q ss_pred HHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCccc
Q 044630 15 IFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTNEER 93 (343)
Q Consensus 15 ~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~~~~ 93 (343)
.....+++++|++..+.+++.+++..+..++.+++|+++||+ |||+++..+. +.+... .+.++.+
T Consensus 29 ~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~-~~~~~~~------------ 94 (412)
T TIGR02332 29 FAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLWGIAS-TATMFAT------------ 94 (412)
T ss_pred HHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHHHHHH-HHHHHhc------------
Confidence 344578899999999999999999999999999999999995 9999998877 222222 1222212
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 94 IHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
+.+.+++.+++.|+ +.|+..|...+++.|.++++ +|++..+++..+.++|..+++.+.+++.
T Consensus 95 -----------~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 95 -----------GPESLYLLRILVGI-AEAGFLPGILLYLTFWFPAY------FRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred -----------CHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999 99999998888999998743 3888899999999999999999888764
Q ss_pred ------e-ccccccchhHHHHHHHHHHHH
Q 044630 174 ------T-VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 174 ------~-~gw~~~F~i~~~~~~l~~~~~ 195 (343)
+ .|||+.|.+.++..++..++.
T Consensus 157 ~~~~~~~~~gwr~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 157 ALDGLMALKGWQWLFLLEGFPSVILGVMT 185 (412)
T ss_pred hCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 3 699999999776655443333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=124.45 Aligned_cols=152 Identities=17% Similarity=0.231 Sum_probs=119.4
Q ss_pred hhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 044630 12 IMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNE 91 (343)
Q Consensus 12 ~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~ 91 (343)
....++.+.+ ++|++..+++.+.+++.....++.+++|+++||+ |||+.+.++.++..+...+....+
T Consensus 10 ~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~---------- 77 (377)
T PRK11102 10 YLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ---------- 77 (377)
T ss_pred HhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc----------
Confidence 3455666654 6899999999999999999999999999999995 999999888722111111121111
Q ss_pred cccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhe
Q 044630 92 ERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAY 171 (343)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~ 171 (343)
+.+.+++.+++.|+ +.+...+...+++.|.++++ +|++.+++.+...++|..+++.+.++
T Consensus 78 -------------~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~ 137 (377)
T PRK11102 78 -------------TIDQLIYMRFLHGL-AAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGW 137 (377)
T ss_pred -------------cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788889999 99988899999999998754 38889999999999999999999999
Q ss_pred eee-ccccccchhHHHHHHHHHHHH
Q 044630 172 VQT-VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 172 l~~-~gw~~~F~i~~~~~~l~~~~~ 195 (343)
+.+ .+|+..|.+.++..++..+..
T Consensus 138 l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 138 LLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHH
Confidence 888 899999988777665554443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=124.66 Aligned_cols=159 Identities=14% Similarity=0.069 Sum_probs=123.1
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-H--HHHHHHHHHhhcCC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-L--LGMLMVTLTAIVPQ 82 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~--~g~~~l~~~~~~~~ 82 (343)
.++..-....++.|+.+++|.|..+.+.+.+++.....++.++.|+++||+ ||||++.++. . ++.+...++....+
T Consensus 28 ~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (399)
T PRK05122 28 YLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCALSGLLYLLAGLLAA 106 (399)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 344444667788899999999999999999999999999999999999995 9999999987 2 22222222221110
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
. ...+...+++.+++.|+ |.+...++..+++.|.+++++ |++.++++..+.++|.
T Consensus 107 ~------------------~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~ 161 (399)
T PRK05122 107 W------------------PVLSLLLLLLGRLLLGI-GESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGAL 161 (399)
T ss_pred c------------------chhHHHHHHHHHHHHHh-hHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHH
Confidence 0 00135577888999999 999999999999999986542 7788888888889999
Q ss_pred HHHHhhhheeee-ccccccchhHHHHHHH
Q 044630 163 LITSTIVAYVQT-VSWAWGFTIPTVCLFC 190 (343)
Q Consensus 163 ~ig~~~~~~l~~-~gw~~~F~i~~~~~~l 190 (343)
.+|+.+++++.+ .||+..|.+.++..++
T Consensus 162 ~~g~~l~~~l~~~~g~~~~~~~~~~~~~~ 190 (399)
T PRK05122 162 AIGAPLGVLLYHWGGLAGLGLLIMLLALL 190 (399)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999998877 8999888776655443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=129.59 Aligned_cols=150 Identities=17% Similarity=0.093 Sum_probs=118.2
Q ss_pred HHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccc
Q 044630 18 VYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQ 97 (343)
Q Consensus 18 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~ 97 (343)
..+.+++|.+..+.+.+.+.|..+...+.+++|+++||+ |||+++.++.++..+...+.+..+
T Consensus 30 p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~~~~~~~~a~---------------- 92 (495)
T PRK14995 30 PTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGLASLAAAFSP---------------- 92 (495)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHcC----------------
Confidence 344568999999999999999999999999999999995 999999988722211112222212
Q ss_pred cCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-cc
Q 044630 98 CIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VS 176 (343)
Q Consensus 98 ~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~g 176 (343)
+.+.+++++.+.|+ |.|+..|...+.+.+.+.++ ++|+++++++....++|..+||.+++++.+ .|
T Consensus 93 -------~~~~li~~r~l~G~-g~~~~~~~~~~~l~~~~~~~-----~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 93 -------TASWLIATRALLAI-GAAMIVPATLAGIRATFTEE-----KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred -------CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 46788899999999 99998888877787777532 248899999999999999999999999999 99
Q ss_pred ccccchhHHHHHHHHHHHHHh
Q 044630 177 WAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 177 w~~~F~i~~~~~~l~~~~~~~ 197 (343)
||+.|++...+.++.+++.+.
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~ 180 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTAR 180 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999999877655555444333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=128.28 Aligned_cols=152 Identities=13% Similarity=0.176 Sum_probs=121.6
Q ss_pred HHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 044630 14 AIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEER 93 (343)
Q Consensus 14 ~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~ 93 (343)
......+.+++|.+..+.+.+.+.+..+..++.+++|+++||+ |||+.+.++.++..+...+....
T Consensus 22 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------------- 87 (485)
T TIGR00711 22 NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLLCGVA------------- 87 (485)
T ss_pred HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHHhCc-------------
Confidence 3444566678999999999999999999999999999999995 99999988872222222222221
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 94 IHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
.+...+++++++.|+ |.|...+...+++.|.++++ +|+++++++..+.++|..+|+.+++++.
T Consensus 88 ----------~~~~~l~~~~~~~G~-~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 88 ----------PNLELMIIFRVIQGF-GGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred ----------CCHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 146678889999999 99999999999999999743 3888999999999999999999999998
Q ss_pred e-ccccccchhHHHHHHHHHHHHH
Q 044630 174 T-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 174 ~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
+ .||++.|.+.+...+++++..+
T Consensus 151 ~~~~w~~~f~~~~~~~~~~~~~~~ 174 (485)
T TIGR00711 151 ENYHWRWIFLINVPIGIIVVVVAF 174 (485)
T ss_pred cCcCceehhhhhhHHHHHHHHHHH
Confidence 8 9999999987766555544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=124.57 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=121.9
Q ss_pred HHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 044630 14 AIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEER 93 (343)
Q Consensus 14 ~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~ 93 (343)
+....++.+++|++..+.+.+.+++.....++.+++|+++||+ |||+++.++.++..+...+.++.+
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------ 80 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------ 80 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc------------
Confidence 3344557888999999999999999999999999999999995 999999888722111111222211
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 94 IHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
+.+.+++++++.|+ |.|...+...+++.|.++++ +|++.++++....++|..+++.+.+++.
T Consensus 81 -----------~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 81 -----------AYVSLYILRVLLGA-AEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred -----------CHHHHHHHHHHHHH-HHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 46778889999999 99999999999999998743 3889999999999999999999999887
Q ss_pred e-ccccccchhHHHHHHHHHHHHH
Q 044630 174 T-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 174 ~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
+ .+|++.|.+.++..++..+..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~ 166 (399)
T TIGR00893 143 IHFSWQWAFIIEGVLGIIWGVLWL 166 (399)
T ss_pred HhCCchHHHHHHHHHHHHHHHHhh
Confidence 7 9999999988776655544443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=122.87 Aligned_cols=150 Identities=21% Similarity=0.115 Sum_probs=115.6
Q ss_pred HHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 044630 14 AIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEER 93 (343)
Q Consensus 14 ~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~ 93 (343)
+.+..++.+++|++..+.+.+.+++..+..++.+++|+++||+ |||+++.++..+..+...+.++.+
T Consensus 23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~------------ 89 (377)
T TIGR00890 23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD------------ 89 (377)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH------------
Confidence 4566788889999999999999999999999999999999995 999999988722111122222212
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 94 IHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
+.+.+++++.+.|+ |.|...+.......+.+++ +|++..+++..+.++|.++++.+.+.+.
T Consensus 90 -----------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 150 (377)
T TIGR00890 90 -----------SLAALYLTYGLASA-GVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVI 150 (377)
T ss_pred -----------HHHHHHHHHHHHhH-HHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHH
Confidence 46677888889999 9888777777777777753 2778888988899999887766666666
Q ss_pred e-ccccccchhHHHHHHHHHHHH
Q 044630 174 T-VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 174 ~-~gw~~~F~i~~~~~~l~~~~~ 195 (343)
+ .||++.|.+.++..++..+..
T Consensus 151 ~~~~~~~~f~~~~~~~~~~~~~~ 173 (377)
T TIGR00890 151 NLEGVPAAFIYMGIIFLLVIVLG 173 (377)
T ss_pred hcccHHHHHHHHHHHHHHHHHHH
Confidence 6 899999998887665554443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=125.10 Aligned_cols=148 Identities=14% Similarity=0.234 Sum_probs=119.2
Q ss_pred HHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 044630 14 AIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEER 93 (343)
Q Consensus 14 ~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~ 93 (343)
..++. +.+++|++..+.+..++++.....++.++.|.++||+ ||||.+..+.++..+...+....+
T Consensus 41 ~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~------------ 106 (394)
T PRK10213 41 SLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAVLLTLSCLLVSFAN------------ 106 (394)
T ss_pred hhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHHHHHHHHHHHHC------------
Confidence 33444 4568999999999999999999999999999999994 999999988722222222222212
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 94 IHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
+.+.+++.+++.|+ +.|...|...+++.|.++++ +|+++.++...+.++|..++|.+++++.
T Consensus 107 -----------~~~~l~~~r~l~G~-~~g~~~~~~~~~i~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 107 -----------SFSLLLIGRACLGL-ALGGFWAMSASLTMRLVPPR------TVPKALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred -----------hHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999 99999999999999998754 3888999999999999999999999998
Q ss_pred e-ccccccchhHHHHHHHHHH
Q 044630 174 T-VSWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 174 ~-~gw~~~F~i~~~~~~l~~~ 193 (343)
+ .||++.|.+.++..++.++
T Consensus 169 ~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 169 ELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred hhcCHHHHHHHHHHHHHHHHH
Confidence 8 9999999987765554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-12 Score=122.08 Aligned_cols=156 Identities=15% Similarity=0.243 Sum_probs=120.1
Q ss_pred hhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044630 5 ERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLR 84 (343)
Q Consensus 5 e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~ 84 (343)
+.+..+.+.... ..+.+++|++..+.+.+.+.+.....++.++.|+++||+ |||+++.++.++..+...+..+.+
T Consensus 24 ~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~--- 98 (405)
T TIGR00891 24 DAFDFFLVALVL-AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVLFSAGTLACGFAP--- 98 (405)
T ss_pred HHHHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc---
Confidence 344444443333 466788999999999999999999999999999999995 999999988622211111222212
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLI 164 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~i 164 (343)
+.+.+++.+++.|+ |.|...+...+++.|.++++ +|++..+++..+.++|..+
T Consensus 99 --------------------~~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~ 151 (405)
T TIGR00891 99 --------------------GYITMFIARLVIGI-GMGGEYGSSAAYVIESWPKH------LRNKASGLLISGYAVGAVV 151 (405)
T ss_pred --------------------cHHHHHHHHHHHHh-hhhhhhHHHHHHHHHhCChh------hhhHHHHHHHHHHHHHHHH
Confidence 35677888999999 99999999999999998754 2888899999999999999
Q ss_pred HHhhhheeee-cc--ccccchhHHHHHHHHH
Q 044630 165 TSTIVAYVQT-VS--WAWGFTIPTVCLFCGL 192 (343)
Q Consensus 165 g~~~~~~l~~-~g--w~~~F~i~~~~~~l~~ 192 (343)
++.+.+.+.+ .+ |+..|.+.++..++.+
T Consensus 152 ~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 152 AAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 9999888776 54 9999987665554443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-12 Score=117.99 Aligned_cols=163 Identities=19% Similarity=0.298 Sum_probs=131.9
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCC
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQ 82 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~ 82 (343)
+++.++++.....++.|.. ++|.+..+.+.+.+.......++.++.|+++||+ ||||.+.++..+..+........+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~~~~~~- 85 (352)
T cd06174 9 FLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLLLAFAS- 85 (352)
T ss_pred HHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHHHHHhc-
Confidence 4567777888888888775 5799999999999999999999999999999995 999998888722222222221111
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
+.+.+++++.+.|+ +.+...+...++..|.+++++ |++.+++.+...++|.
T Consensus 86 ----------------------~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~ 136 (352)
T cd06174 86 ----------------------SLWLLLVGRFLLGL-GGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGA 136 (352)
T ss_pred ----------------------cHHHHHHHHHHHHc-ccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHH
Confidence 35678888999999 999999999999999997642 8889999999999999
Q ss_pred HHHHhhhheeee-ccccccchhHHHHHHHHHHHHHh
Q 044630 163 LITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 163 ~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
.+++.+.+++.+ .+|+..|.+.++..+++.+....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
T cd06174 137 LLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172 (352)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 88999999888877666555443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6e-12 Score=124.36 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=127.4
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCC
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQ 82 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~ 82 (343)
+..+.++.+...++.|.. ++|++..+.+.+.+.+.....++.+++|+++||+ ||||.+..+. +.+...+ .....+
T Consensus 21 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~-~~~~~~- 96 (471)
T PRK10504 21 MQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTLGSL-FCALSG- 96 (471)
T ss_pred HHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHH-HHHHhC-
Confidence 344566677777777775 5999999999999999999999999999999995 9999998776 2222211 111211
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
+.+.+++++++.|+ |.|...|...+.+.|.++++ ++++.++++....++|.
T Consensus 97 ----------------------~~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~ 147 (471)
T PRK10504 97 ----------------------TLNELLLARVLQGV-GGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGP 147 (471)
T ss_pred ----------------------CHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHH
Confidence 35667888999999 99999999999999988643 37888999999999999
Q ss_pred HHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccc
Q 044630 163 LITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMR 200 (343)
Q Consensus 163 ~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~ 200 (343)
.+|+.+.+++.+ .||++.|.+......++.+......+
T Consensus 148 ~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 148 LLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999988 99999999877665555544444333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-12 Score=122.40 Aligned_cols=156 Identities=19% Similarity=0.147 Sum_probs=120.9
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLR 84 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~ 84 (343)
.+..+.....+ ..+.+++|++..+.+.+.+.+..+..++.++.|+++||+ ||||++..+. +.+... .+....+
T Consensus 28 ~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~-~~~~~~~--- 101 (406)
T PRK11551 28 GLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALFGLFS-LATAQAW--- 101 (406)
T ss_pred HHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHH-HHHHHhc---
Confidence 33334433333 455577999999999999999999999999999999995 9999999887 222221 1222211
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLI 164 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~i 164 (343)
+.+.+++.+++.|+ +.|...+...+++.|.++++ +|++.+++++.+.++|..+
T Consensus 102 --------------------~~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~ 154 (406)
T PRK11551 102 --------------------DFPSLLVARLLTGV-GLGGALPNLIALTSEAVGPR------LRGTAVSLMYCGVPFGGAL 154 (406)
T ss_pred --------------------cHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHH
Confidence 35677888999999 99999999999999998753 3889999999999999999
Q ss_pred HHhhhheeee-ccccccchhHHHHHHHHHHH
Q 044630 165 TSTIVAYVQT-VSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 165 g~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~ 194 (343)
++.+.+.+.+ .+|+..|.+.+++.++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK11551 155 ASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence 9998888877 89999999877665544433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-12 Score=119.89 Aligned_cols=151 Identities=14% Similarity=0.230 Sum_probs=109.8
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRP 85 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~ 85 (343)
-..++...+.++.|+++++|++..+++.+.+.+..+..++.+++|+++||+ |||+++.++.++..+...+..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~~~~~~~---- 88 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPCLWAGLAV---- 88 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHh----
Confidence 345566666677789999999999999999999999999999999999995 999999988722222112222111
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 044630 86 PHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLIT 165 (343)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig 165 (343)
.+.+.+++++++.|+ +.+.. +...++++|.++++ +|+...+++....++|..++
T Consensus 89 ------------------~~~~~~~~~~~~~g~-~~~~~-~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~ 142 (366)
T TIGR00886 89 ------------------QSYSVLLLLRLFIGI-AGGSF-ASCMPWISFFFPKK------IQGTALGLAAGWGNMGGGVA 142 (366)
T ss_pred ------------------hhHHHHHHHHHHHHH-hchhh-HhHHHHHHHhcCHh------hhhHHHHHHHHHhHHHHHHH
Confidence 035677788899999 86654 55678899998754 27888888887777787777
Q ss_pred Hhhhheeee-----------ccccccc-hhHHHH
Q 044630 166 STIVAYVQT-----------VSWAWGF-TIPTVC 187 (343)
Q Consensus 166 ~~~~~~l~~-----------~gw~~~F-~i~~~~ 187 (343)
+.+.+.+.. .+|++.| .+.++.
T Consensus 143 ~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~ 176 (366)
T TIGR00886 143 QFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGI 176 (366)
T ss_pred HHHHHHHHHHHHhcccccccccccchhHHHHHHH
Confidence 766654432 3899999 443443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.8e-12 Score=124.88 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=115.7
Q ss_pred hHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCc
Q 044630 13 MAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTNE 91 (343)
Q Consensus 13 ~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~~ 91 (343)
...++.+ .+++|++..+.+.+.+.+.+...++.+++|+++||+ |||+.+.++. ..+... .+.+..+
T Consensus 43 ~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~-~~~~~~~---------- 109 (434)
T PRK11663 43 NAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIIN-ILFGFSS---------- 109 (434)
T ss_pred HHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHH-HHHHHHh----------
Confidence 3344444 456999999999999999999999999999999995 9999998887 222222 2222211
Q ss_pred cccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhe
Q 044630 92 ERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAY 171 (343)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~ 171 (343)
+.+.+++.+++.|+ +.|...+...+++.|.++++ +|++.+++++.+.++|..+++.+.++
T Consensus 110 -------------~~~~l~~~~~l~g~-~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~ 169 (434)
T PRK11663 110 -------------SLWAFALLWVLNAF-FQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHNVGGALIPLVVGA 169 (434)
T ss_pred -------------HHHHHHHHHHHHHH-HHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777788888 88888899999999999753 38899999999999999999999999
Q ss_pred eee-ccccccchhHHHHHHHH
Q 044630 172 VQT-VSWAWGFTIPTVCLFCG 191 (343)
Q Consensus 172 l~~-~gw~~~F~i~~~~~~l~ 191 (343)
+.+ .||++.|.+.++..++.
T Consensus 170 l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 170 IALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHcccHHHHHHHHHHHHHHH
Confidence 888 99999999877654433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.1e-12 Score=121.19 Aligned_cols=159 Identities=17% Similarity=0.192 Sum_probs=121.1
Q ss_pred HHhhhhhHHHHHH--hhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044630 7 LGSFGIMAIFTVY--LLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLR 84 (343)
Q Consensus 7 ~~~yg~~~~L~~y--l~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~ 84 (343)
+++.+....+|.+ +.+++|.+..+++.+.+++.....++.+++|+++||+ |||+.+..+..+..+...+....+
T Consensus 17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~--- 92 (401)
T PRK11043 17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE--- 92 (401)
T ss_pred HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc---
Confidence 4555555666655 6788999999999999999999999999999999995 999999888722211111222211
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLI 164 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~i 164 (343)
+.+.+++.+++.|+ |.+...+...++..|.++++ ++.+.++......++|..+
T Consensus 93 --------------------~~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 145 (401)
T PRK11043 93 --------------------SAAQLLVLRFVQAV-GVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPAL 145 (401)
T ss_pred --------------------CHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHH
Confidence 35677788888899 88877777788888988753 2566777777788899999
Q ss_pred HHhhhheeee-ccccccchhHHHHHHHHHHHHH
Q 044630 165 TSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 165 g~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
++.+.+++.+ .||+..|.+.++..++..+..+
T Consensus 146 g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 146 APLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 9999999988776665544433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=123.63 Aligned_cols=154 Identities=12% Similarity=0.168 Sum_probs=119.8
Q ss_pred hhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 044630 11 GIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTN 90 (343)
Q Consensus 11 g~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~ 90 (343)
...+.+ ..+.+++|++.++.+...+.+..+..++.+++|+++||+ |||+++.++..+..+...+.++.+
T Consensus 21 ~~~~~l-~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~l~~~~~--------- 89 (382)
T PRK10091 21 GIMGVL-TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIGNAMFTLSS--------- 89 (382)
T ss_pred HHHhCh-HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHHHHHHHhC---------
Confidence 333444 445678999999999999999999999999999999995 999999988722222222333222
Q ss_pred ccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044630 91 EERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVA 170 (343)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~ 170 (343)
+.+.+++.+++.|+ +.|...+...++..|.++++ +|++.++.+..+.++|..+++.+.+
T Consensus 90 --------------~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~ 148 (382)
T PRK10091 90 --------------SYLMLAIGRLVSGF-PHGAFFGVGAIVLSKIIKPG------KVTAAVAGMVSGMTVANLLGIPLGT 148 (382)
T ss_pred --------------cHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCChH------HhhHHHHHHHHHHHHHHHHhccHHH
Confidence 46788889999999 99988888888888887643 2677888888889999999999999
Q ss_pred eeee-ccccccchhHHHHHHHHHHHHH
Q 044630 171 YVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 171 ~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
++.+ .|||+.|.+.++..++..+..+
T Consensus 149 ~l~~~~gwr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 149 YLSQEFSWRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 9888 8999999998876655544433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-12 Score=122.49 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=117.4
Q ss_pred HhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 044630 8 GSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPH 87 (343)
Q Consensus 8 ~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~ 87 (343)
.++.+...++ -+.+++|+|..+.+.+.+.+..+..++.++.|+++||+ |||+++..+..+..+...+.++.|
T Consensus 24 ~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~------ 95 (393)
T PRK09705 24 LLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP------ 95 (393)
T ss_pred hhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc------
Confidence 3444444444 45568999999999999999999999999999999995 999999999822222222333323
Q ss_pred CCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 044630 88 CTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITST 167 (343)
Q Consensus 88 c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~ 167 (343)
+...+++++++.|+ |.|...+...+.+.|.+++ +|+...+.+..+.++|..+|+.
T Consensus 96 -----------------~~~~ll~~r~l~Gi-g~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~~g~~ 150 (393)
T PRK09705 96 -----------------QSALLLSSALLGGV-GIGIIQAVMPSVIKRRFQQ-------RTPLVMGLWSAALMGGGGLGAA 150 (393)
T ss_pred -----------------chHHHHHHHHHHHh-HHHHHhhhhhHHHHHHccc-------cchhHHHHHHHHHHHHHHHHHH
Confidence 35677889999999 9999999999999888852 1778888888889999999999
Q ss_pred hhheeee--ccccccchhHHHHHHHHHH
Q 044630 168 IVAYVQT--VSWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 168 ~~~~l~~--~gw~~~F~i~~~~~~l~~~ 193 (343)
+.+++.+ .+|+..+.+.++..+++++
T Consensus 151 ~~~~l~~~~~~w~~~~~~~~~~~~~~~~ 178 (393)
T PRK09705 151 ITPWLVQHSETWYQTLAWWALPAVVALF 178 (393)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 9888777 4899888765554444433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-12 Score=122.88 Aligned_cols=143 Identities=14% Similarity=0.216 Sum_probs=115.7
Q ss_pred HHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccc
Q 044630 15 IFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERI 94 (343)
Q Consensus 15 ~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~ 94 (343)
.+..++.+++|+++.+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..+...+.++.
T Consensus 39 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~-------------- 103 (426)
T PRK12307 39 YIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYSVGTGLSGLA-------------- 103 (426)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHH--------------
Confidence 344556678999999999999999999999999999999995 99999998872222212222221
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee
Q 044630 95 HGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT 174 (343)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~ 174 (343)
.+.+.+++++++.|+ |.|...+...+++.|.++++ +|+++.+++..+..+|.++++.+.+++.+
T Consensus 104 ---------~~~~~l~~~r~l~G~-g~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~ 167 (426)
T PRK12307 104 ---------SGVIMLTLSRFIVGM-GMAGEYACASTYAVESWPKH------LKSKASAFLVSGFGIGNIIAAYFMPSFAE 167 (426)
T ss_pred ---------hHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCHh------HhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence 146778889999999 99999999999999998754 37888899999999999999999888888
Q ss_pred -ccccccchhHHHHH
Q 044630 175 -VSWAWGFTIPTVCL 188 (343)
Q Consensus 175 -~gw~~~F~i~~~~~ 188 (343)
.||+..|.+..+..
T Consensus 168 ~~~w~~~f~i~~~~~ 182 (426)
T PRK12307 168 AYGWRAAFFVGLLPV 182 (426)
T ss_pred cCCHHHHHHHHHHHH
Confidence 99999998865443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=122.42 Aligned_cols=151 Identities=13% Similarity=0.195 Sum_probs=118.5
Q ss_pred HHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccc
Q 044630 15 IFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERI 94 (343)
Q Consensus 15 ~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~ 94 (343)
....++.+++|++..+.+.+.+++..+..++.+++|+++||+ |||+++.++.++..+...+....+
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------- 81 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------- 81 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh-------------
Confidence 344678889999999999999999999999999999999995 999999988722211112222211
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH-hhhheee
Q 044630 95 HGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITS-TIVAYVQ 173 (343)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~-~~~~~l~ 173 (343)
+.+.+++.+++.|+ +.|...+...+++.|.++++ +|++.+++...+.++|..+++ .+.+.+.
T Consensus 82 ----------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 144 (379)
T TIGR00881 82 ----------SLWVMAALWALNGI-FQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIA 144 (379)
T ss_pred ----------hHHHHHHHHHHHHh-hccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHH
Confidence 35678888999999 99999999999999998754 278888888899999999999 4666666
Q ss_pred e-ccccccchhHHHHHHHHHHHHH
Q 044630 174 T-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 174 ~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
+ .+|+..|.+.+++.++..++.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 145 ELYSWHWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHh
Confidence 6 8999999888776555444333
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.8e-12 Score=120.63 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=111.1
Q ss_pred HHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccc
Q 044630 18 VYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQ 97 (343)
Q Consensus 18 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~ 97 (343)
.++.+++|++..+.+.+.+.+.....++.+++|+++||+ ||||.+.++..+..+...+....+
T Consensus 32 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~---------------- 94 (394)
T PRK11652 32 ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIFILGTLVALFAH---------------- 94 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHHHHHHc----------------
Confidence 445678999999999999999999999999999999995 999999887622111111111111
Q ss_pred cCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-cc
Q 044630 98 CIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VS 176 (343)
Q Consensus 98 ~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~g 176 (343)
+.+.+++.+++.|+ +.|...+...++..|.++++ ++++..+++..+..+|..++|.+.+++.+ .|
T Consensus 95 -------~~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g 160 (394)
T PRK11652 95 -------SLTVLIAASAIQGL-GTGVGGVMARTLPRDLYEGT------QLRHANSLLNMGILVSPLLAPLIGGLLTTLFG 160 (394)
T ss_pred -------cHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35677888899999 88877777777778877543 36777788888889999999999999888 89
Q ss_pred ccccchhHHHHHHHHH
Q 044630 177 WAWGFTIPTVCLFCGL 192 (343)
Q Consensus 177 w~~~F~i~~~~~~l~~ 192 (343)
|+..|.+.++..++..
T Consensus 161 ~~~~f~~~~~~~~~~~ 176 (394)
T PRK11652 161 WRACYLFLLLLGAGVT 176 (394)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999998776554433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-12 Score=119.47 Aligned_cols=150 Identities=16% Similarity=0.220 Sum_probs=118.3
Q ss_pred HHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 044630 14 AIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEER 93 (343)
Q Consensus 14 ~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~ 93 (343)
.....++.+++|++..+++.+.+.+.....++.+++|+++||+ |||+.+.++.++..+...+....+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~------------ 103 (398)
T TIGR00895 37 GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSVFTLLCALAT------------ 103 (398)
T ss_pred HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHcc------------
Confidence 3344566678999999999999999999999999999999995 999999888722211112222211
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 94 IHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
+.+.+++.+++.|+ +.|...+...++++|.++++ .|++.++++..+.++|..+++.+.+++.
T Consensus 104 -----------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 104 -----------NVTQLLILRFLAGL-GLGGLMPNLNALVSEYAPKR------FRGTAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred -----------chHHHHHHHHHHhc-ccccchhhHHHHHHHHcCHH------hhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 35667788899999 99999999999999998753 3888899999999999999999999988
Q ss_pred e-ccccccchhHHHHHHHHHHH
Q 044630 174 T-VSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 174 ~-~gw~~~F~i~~~~~~l~~~~ 194 (343)
+ .||+..|.+.++..++..++
T Consensus 166 ~~~g~~~~~~~~~~~~~~~~~~ 187 (398)
T TIGR00895 166 PVFGWRSLFYVGGIAPLLLLLL 187 (398)
T ss_pred hcccceeehhhhhhHHHHHHHH
Confidence 8 99999999886554444333
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.3e-12 Score=120.35 Aligned_cols=145 Identities=14% Similarity=0.183 Sum_probs=113.8
Q ss_pred HhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 044630 19 YLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQC 98 (343)
Q Consensus 19 yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~ 98 (343)
.+.+++|.+..+.+...+.+.....++.++.|+++||+ |||+.+.++.++..+...+....+
T Consensus 28 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~~~~----------------- 89 (392)
T PRK10473 28 RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSLAE----------------- 89 (392)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHHHhC-----------------
Confidence 44567999999999999999999999999999999995 999999888722111111111111
Q ss_pred CCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-ccc
Q 044630 99 IGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VSW 177 (343)
Q Consensus 99 ~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~gw 177 (343)
+.+.+++++++.|+ +.+...+...+++.|.++++ +|++..++.+...++|..++|.+.+++.+ .||
T Consensus 90 ------~~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~ 156 (392)
T PRK10473 90 ------TSSLFLAGRFLQGI-GAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPW 156 (392)
T ss_pred ------cHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCh
Confidence 34567778889999 99988888899999998753 38888999999999999999999888877 899
Q ss_pred cccchhHHHHHHHHHHH
Q 044630 178 AWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 178 ~~~F~i~~~~~~l~~~~ 194 (343)
+..|.+.++..++..+.
T Consensus 157 ~~~~~~~~~~~~i~~~~ 173 (392)
T PRK10473 157 QSLFYTMAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998887765555444
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6e-12 Score=120.38 Aligned_cols=147 Identities=15% Similarity=0.214 Sum_probs=127.6
Q ss_pred hhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCcccccc
Q 044630 20 LLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHG 96 (343)
Q Consensus 20 l~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~~~~~ 96 (343)
+.+++|+|..+++..+++|..+..++.++-..+.|| +.||+.++... ++|.++ +++.|
T Consensus 39 iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~lFi~~n~l---~alAp--------------- 99 (394)
T COG2814 39 IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFIVSNLL---SALAP--------------- 99 (394)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHH---HHHhc---------------
Confidence 446799999999999999999999999999999999 59999988776 444443 33334
Q ss_pred ccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-c
Q 044630 97 QCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-V 175 (343)
Q Consensus 97 ~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~ 175 (343)
+.+.+.++|++.|+ ..|.+.+...+..++..++++ |+++.+..+.+..++..+|..++.++.| .
T Consensus 100 --------~f~~Ll~aR~~~g~-a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~ 164 (394)
T COG2814 100 --------SFAVLLLARALAGL-AHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLF 164 (394)
T ss_pred --------cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 47889999999999 999999999999999998753 8999999999999999999999999999 9
Q ss_pred cccccchhHHHHHHHHHHHHHhccc
Q 044630 176 SWAWGFTIPTVCLFCGLVLLFAGMR 200 (343)
Q Consensus 176 gw~~~F~i~~~~~~l~~~~~~~~~~ 200 (343)
|||..|.+.+++-+++++..+...|
T Consensus 165 GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 165 GWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999888887777777666666
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-11 Score=118.09 Aligned_cols=150 Identities=12% Similarity=0.138 Sum_probs=110.9
Q ss_pred hhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHH--HHHHHhhcC
Q 044630 5 ERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGML--MVTLTAIVP 81 (343)
Q Consensus 5 e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~--~l~~~~~~~ 81 (343)
-.++.+....+++.|+ +++|++..+++...+.+.....++.+++|+++||+ ||||++..+. +.+.. +...... .
T Consensus 25 ~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~~~~~~~~~~~~~~-~ 101 (402)
T TIGR00897 25 FMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLLWCVGHAAFIVFGL-G 101 (402)
T ss_pred HHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHhc-c
Confidence 3445555666788888 56899999999999999999999999999999995 9999998887 22222 1111111 0
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
..+.+.+++.+.+.|+ |.+...+...+.+.+.++++ +|+++.+++..+.++|
T Consensus 102 ---------------------~~~~~~l~~~~~i~G~-g~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g 153 (402)
T TIGR00897 102 ---------------------HANYPLILLFYGIRGL-GYPLFAYSFLVWVVYNTKQD------NLSSAVGWFWAVYSIG 153 (402)
T ss_pred ---------------------CccHHHHHHHHHHHHc-chHHHHhHHHHHHHHhCCHH------HHHHHHHHHHHHHHHH
Confidence 0134566677888899 88877777777788877643 3889999999999999
Q ss_pred H-HHHHhhhheeee-ccccccchhHH
Q 044630 162 L-LITSTIVAYVQT-VSWAWGFTIPT 185 (343)
Q Consensus 162 ~-~ig~~~~~~l~~-~gw~~~F~i~~ 185 (343)
. .+++.+.+++.+ .||+..++...
T Consensus 154 ~~~~g~~~~~~l~~~~g~~~~~~~~~ 179 (402)
T TIGR00897 154 IGVFGSYYSSYAIPAFGEMNTLWSAL 179 (402)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHH
Confidence 6 688988888887 78655544433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-11 Score=118.06 Aligned_cols=160 Identities=13% Similarity=0.066 Sum_probs=119.0
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHH-----HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAY-----VAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLT 77 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~-----a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~ 77 (343)
++..+++......++.|++ ++|++..+ ++.+.+++.....++.++.|+++||+ |||+.+..+.++..+...+.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~ 101 (408)
T PRK09874 24 FLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALGMGIVMVLM 101 (408)
T ss_pred HHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHHHHHHHHHH
Confidence 3455667777778888886 48888654 37788888899999999999999995 99999988762211111122
Q ss_pred hhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHH
Q 044630 78 AIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTT 157 (343)
Q Consensus 78 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~ 157 (343)
... .+.+.+++.+.+.|+ +.+ ..+...+.+.|.++++ +|++..+++..+
T Consensus 102 ~~~-----------------------~~~~~~~~~~~~~g~-~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 150 (408)
T PRK09874 102 GLA-----------------------QNIWQFLILRALLGL-LGG-FVPNANALIATQVPRN------KSGWALGTLSTG 150 (408)
T ss_pred HHH-----------------------hhHHHHHHHHHHHHH-hhh-hHHhHHHHHHHhcCHh------hhhHHHHHHHHH
Confidence 111 135677788888888 755 4577777888887643 378888888899
Q ss_pred HHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHH
Q 044630 158 FTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 158 ~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~ 195 (343)
.++|.++++.+.+++.+ .+|+..|.+.++..+++.+..
T Consensus 151 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 189 (408)
T PRK09874 151 GVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVT 189 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888 899999998887766555443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=120.33 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=117.1
Q ss_pred hhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCC
Q 044630 11 GIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPH 87 (343)
Q Consensus 11 g~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~ 87 (343)
++...+...+++++|++..+++.+.+.+..+..++.++.|++.||+ |||+++.++. .+|.++...++.
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~l~~~~~~-------- 90 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAFLFWPAAE-------- 90 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 4555566777889999999999999999999999999999999995 9999999987 333332211111
Q ss_pred CCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 044630 88 CTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITST 167 (343)
Q Consensus 88 c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~ 167 (343)
..+.+.+++++++.|+ |.|...+..++++.+..+++ ++++..++.....++|..+|+.
T Consensus 91 ---------------~~~~~~~l~~~~l~G~-g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~~g~~ 148 (410)
T TIGR00885 91 ---------------IMNYTLFLVGLFILTA-GLGFLETAANPYILVMGPES------TATRRLNLAQSFNPFGSIIGMV 148 (410)
T ss_pred ---------------hccHHHHHHHHHHHHh-hHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHH
Confidence 1246778889999999 99999999999998876543 2556677778888899988888
Q ss_pred hhheee--------------------------e-ccccccchhHHHHHHHHHHHH
Q 044630 168 IVAYVQ--------------------------T-VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 168 ~~~~l~--------------------------~-~gw~~~F~i~~~~~~l~~~~~ 195 (343)
+.+.+. + .+|+..|.+.+++.++..+++
T Consensus 149 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 149 VAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776552 2 469999987776555444333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-11 Score=119.15 Aligned_cols=156 Identities=14% Similarity=0.196 Sum_probs=105.2
Q ss_pred hHHHHHHhhHhcC---CChHHHHHHHHHHHHH---HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 044630 13 MAIFTVYLLNEYN---VSQAYVAAKFGAWNGV---ADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPP 86 (343)
Q Consensus 13 ~~~L~~yl~~~lg---~s~~~a~~~~~~~~~~---~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~ 86 (343)
.+.+..++.++++ .+..+.+.+.+.+... ..++.+++|+++||+ ||||++.++.++..+...+.++.|+...
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~- 118 (432)
T PRK10406 41 YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGSLVIACLPGYET- 118 (432)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHhhcCCchh-
Confidence 4455567788874 5666544444444443 448888999999995 9999999887222121222333232100
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 044630 87 HCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITS 166 (343)
Q Consensus 87 ~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~ 166 (343)
........+++.+++.|+ |.|+..|...++++|.+++++ |+.+.++.+.+.+.|.++++
T Consensus 119 --------------~~~~~~~~l~~~R~l~G~-g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~ 177 (432)
T PRK10406 119 --------------IGTWAPALLLLARLFQGL-SVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLAL 177 (432)
T ss_pred --------------HHHHHHHHHHHHHHHHHh-hhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHH
Confidence 000123467889999999 999999999999999987642 67778888888888888877
Q ss_pred hhhheee---------eccccccchhHHHHHHHH
Q 044630 167 TIVAYVQ---------TVSWAWGFTIPTVCLFCG 191 (343)
Q Consensus 167 ~~~~~l~---------~~gw~~~F~i~~~~~~l~ 191 (343)
.+...+. +.|||..|.+.++..++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 178 LVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 6544432 279999999877765544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-11 Score=116.27 Aligned_cols=151 Identities=18% Similarity=0.271 Sum_probs=114.2
Q ss_pred hhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 044630 12 IMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNE 91 (343)
Q Consensus 12 ~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~ 91 (343)
+...++. +.+++|++..+.+.+.+.+.++..++.+++|+++||+ ||||++.++.++..+...+..+.+
T Consensus 26 ~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~l~~~~~---------- 93 (394)
T PRK03699 26 TGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALMILAVAGLMFSH---------- 93 (394)
T ss_pred HhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHcc----------
Confidence 3333433 5568999999999999999999999999999999995 999999887622111111222211
Q ss_pred cccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhe
Q 044630 92 ERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAY 171 (343)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~ 171 (343)
+.+.+++.+++.|+ +.|...+...+.+.|.++++ +|+...+..+...++|+.++|.+.++
T Consensus 94 -------------~~~~~~~~~~l~G~-~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~ 153 (394)
T PRK03699 94 -------------SLALFSIAMFVLGV-VSGITMSIGTFLITHVYEGK------QRGSRLLFTDSFFSMAGMIFPIIAAY 153 (394)
T ss_pred -------------hHHHHHHHHHHHHH-hhHhhccchhHHhhhhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999 99998999999999998653 26777777777888899999988887
Q ss_pred ee-e-ccccccchhHHHHHHHHHHH
Q 044630 172 VQ-T-VSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 172 l~-~-~gw~~~F~i~~~~~~l~~~~ 194 (343)
+. + .|||..|.+.++..++..+.
T Consensus 154 l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 154 LLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHH
Confidence 64 4 79999999877765554443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=121.88 Aligned_cols=145 Identities=14% Similarity=0.229 Sum_probs=116.1
Q ss_pred HHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 044630 14 AIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEER 93 (343)
Q Consensus 14 ~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~ 93 (343)
..+..++.+++|++..+++...+.+..+..++.+++|+++||+ |||+++.++.++..+...+..+.+
T Consensus 40 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------ 106 (496)
T PRK03893 40 TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLFSVGTLACGFAP------------ 106 (496)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh------------
Confidence 3444567788999999999999999999999999999999995 999999888722222222222211
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 94 IHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
+.+.+++.+++.|+ +.++..+...+++.|.++++ +|++.+++++.+.++|..+++.+.+++.
T Consensus 107 -----------~~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 107 -----------GYWTLFIARLVIGM-GMAGEYGSSATYVIESWPKH------LRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred -----------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888999999 99999999999999998753 3788889999999999999999999988
Q ss_pred e-ccccccchhHHHHHH
Q 044630 174 T-VSWAWGFTIPTVCLF 189 (343)
Q Consensus 174 ~-~gw~~~F~i~~~~~~ 189 (343)
+ .||++.|.+.++..+
T Consensus 169 ~~~~w~~~f~~~~~~~~ 185 (496)
T PRK03893 169 PVWGWRALFFIGILPII 185 (496)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 8 999999987655443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-11 Score=115.15 Aligned_cols=140 Identities=12% Similarity=0.031 Sum_probs=111.3
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCC
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQ 82 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~ 82 (343)
++..+++..+...++.|+. ++|+|..+++.+.+.+..+..++.++.|+++||+ ||||.+..+.++..+........+
T Consensus 16 ~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~~~~~~~~~~- 92 (381)
T PRK03633 16 LLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAAGCAGLGLMV- 92 (381)
T ss_pred HHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 4566677777788888887 5799999999999999999999999999999995 999999988722222222222212
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
+.+.+++++++.|+ +.|...|...+...|..+++ +|++.++++..+.++|.
T Consensus 93 ----------------------~~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~ 143 (381)
T PRK03633 93 ----------------------GFWSWLAWRFVAGI-GCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGT 143 (381)
T ss_pred ----------------------cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHH
Confidence 35778888999999 99988887777777776542 37889999999999999
Q ss_pred HHHHhhhheeee
Q 044630 163 LITSTIVAYVQT 174 (343)
Q Consensus 163 ~ig~~~~~~l~~ 174 (343)
.+|+.+.+++.+
T Consensus 144 ~~g~~~~~~l~~ 155 (381)
T PRK03633 144 VLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHhcccc
Confidence 999999998877
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.3e-12 Score=121.51 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=115.2
Q ss_pred HHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-H--HHHHHHHHHhhcCCCCCCCCCC
Q 044630 14 AIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-L--LGMLMVTLTAIVPQLRPPHCTN 90 (343)
Q Consensus 14 ~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~--~g~~~l~~~~~~~~~~~~~c~~ 90 (343)
..++.| .++++.+..+++.+.+.+.....++.++.|+++||+ |||+.+..+. + ++..++.+..+..
T Consensus 38 ~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~~~~--------- 106 (417)
T PRK10489 38 VAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGLALNAFLP--------- 106 (417)
T ss_pred HHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHHHHHHHcC---------
Confidence 334444 456788999999999999999999999999999995 9999988775 2 2222222211111
Q ss_pred ccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044630 91 EERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVA 170 (343)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~ 170 (343)
..+.+.+++.+++.|+ +.|...+...+++.|.++++ +++++.++.+...++|..+|+.+.+
T Consensus 107 ------------~~~~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~g 167 (417)
T PRK10489 107 ------------EPSLLAIYLLGLWDGF-FGSLGVTALLAATPALVGRE------NLMQAGAITMLTVRLGSVISPALGG 167 (417)
T ss_pred ------------CCcHHHHHHHHHHHHH-HHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 0135667777888888 88877788888888887643 3788888888999999999999999
Q ss_pred eeee-ccccccchhHHHHHHHHHHHHH
Q 044630 171 YVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 171 ~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
++.+ .+|++.|.+.++..+++.+..+
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T PRK10489 168 LLIAAGGVAWNYGLAAAGTFITLLPLL 194 (417)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9888 8999999888777666554433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=118.86 Aligned_cols=142 Identities=12% Similarity=0.111 Sum_probs=109.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcch
Q 044630 26 VSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQ 105 (343)
Q Consensus 26 ~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 105 (343)
.+..+.+.+.+++..+..++.+++|+++||+ |||+++.++.++..+...+....+. ..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 126 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF--------------------ALS 126 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc--------------------ccc
Confidence 3389999999999999999999999999995 9999998887221111111111110 113
Q ss_pred HHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhh---heeee-ccccccc
Q 044630 106 LAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIV---AYVQT-VSWAWGF 181 (343)
Q Consensus 106 ~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~---~~l~~-~gw~~~F 181 (343)
.+.+++++++.|+ |.|...+...++++|.+++++ |+..+++++.+.++|.++++.+. +...+ .+||+.|
T Consensus 127 ~~~~~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 127 VEMLIVGRVLLGI-GVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred hHHHHHHHHHHHh-hhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 4578889999999 999999999999999987642 78889999999999999999988 66666 8999999
Q ss_pred hhHHHHHHHHHHHH
Q 044630 182 TIPTVCLFCGLVLL 195 (343)
Q Consensus 182 ~i~~~~~~l~~~~~ 195 (343)
.+.++..++.++..
T Consensus 200 ~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 200 GLQLIPAGLLFLGL 213 (481)
T ss_pred HHHHHHHHHHHHHH
Confidence 99666555544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=118.63 Aligned_cols=168 Identities=13% Similarity=0.028 Sum_probs=107.8
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHH--HHHHhhc
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLM--VTLTAIV 80 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~--l~~~~~~ 80 (343)
+-.++++...+.++.|+++++|++..+.+.+.+++.....++++++|+++||+ ||||++.++. ..+... +......
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~ 99 (420)
T PRK09528 21 FFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVLFGPFFIYVFA 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777889999999999999999999999999999999999999999995 9999998765 222111 1111100
Q ss_pred CCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH
Q 044630 81 PQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL 160 (343)
Q Consensus 81 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i 160 (343)
+. .......+..+.++ ..|...+...+...+..++. .++++..++......++
T Consensus 100 ~~----------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~~~~ 152 (420)
T PRK09528 100 PL----------------------LQYNILLGAIVGGI-YLGFGFLAGAGAIEAYIERV----SRRSGFEYGRARMWGSL 152 (420)
T ss_pred HH----------------------HHHHHHHHHHHHHH-HhhhhhccchhhhhhHHHHH----HhhccccchhhHHhhhH
Confidence 00 00011122222233 23322222222222222111 11245566777778899
Q ss_pred HHHHHHhhhheeeeccccccchhHHHHHHHHHHHHHhcc
Q 044630 161 VLLITSTIVAYVQTVSWAWGFTIPTVCLFCGLVLLFAGM 199 (343)
Q Consensus 161 G~~ig~~~~~~l~~~gw~~~F~i~~~~~~l~~~~~~~~~ 199 (343)
|..+++.+.+++.+.+|+..|.+.++..+++++..+..+
T Consensus 153 g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 191 (420)
T PRK09528 153 GWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAK 191 (420)
T ss_pred HHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccc
Confidence 999999999988777899999888777666655554433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.5e-11 Score=115.02 Aligned_cols=164 Identities=18% Similarity=0.225 Sum_probs=108.4
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhc
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGV-ADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIV 80 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~-~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~ 80 (343)
++.+++...+...++.|+.+++|++.++.+.+.+..... ..+.++++|+ +||+ ||||.+++.. +++.+...+.++.
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~~~~~~~~~ 102 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVLACTLFAWN 102 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHHHHHHHHHh
Confidence 456777777889999999999999999999998766554 4455555666 9995 9998865443 3322222222221
Q ss_pred CCCCCCCCCCccccccccCCCCcchHHHHH-HHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHH
Q 044630 81 PQLRPPHCTNEERIHGQCIGPNRNQLAFLH-VAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFT 159 (343)
Q Consensus 81 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~-~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~ 159 (343)
+ +.+.++ .++.+.++ + +...|...++..|..+++ +| ....+.++...+.+
T Consensus 103 ~-----------------------~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~ 153 (393)
T PRK15011 103 R-----------------------NYFVLLFVGVFLSSF-G-STANPQMFALAREHADKT---GR-EAVMFSSFLRAQVS 153 (393)
T ss_pred h-----------------------HHHHHHHHHHHHHHH-H-HhhHHHHHHHHHHHhhhc---cc-hHHHHHHHHHHHHH
Confidence 1 233433 33444444 4 355666777777755432 11 12333467778899
Q ss_pred HHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHh
Q 044630 160 LVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 160 iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
+|.++||.+++++.+ .|||..|.+.++..++..+..+.
T Consensus 154 lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 154 LAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988 99999999887765555444443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-11 Score=114.43 Aligned_cols=164 Identities=11% Similarity=0.036 Sum_probs=115.1
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-H--HHHHHHHHHhhc
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-L--LGMLMVTLTAIV 80 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~--~g~~~l~~~~~~ 80 (343)
+.-.++..+.+.++.|+++++|++..+.+.+.+.+.+...++.+++|+++||+ ||||.+..+. . ++...+......
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~ 91 (396)
T TIGR00882 13 LYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVLFAPFFIYVFG 91 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455667778889999999999999999999999999999999999999995 9999998765 1 111111111110
Q ss_pred CCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH
Q 044630 81 PQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL 160 (343)
Q Consensus 81 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i 160 (343)
+.. .......+.++.++.++ +.+...|...++..|.-++ ++..++......++
T Consensus 92 ~~~------------------~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~~~~~~ 144 (396)
T TIGR00882 92 PLL------------------QSNILVGAIVGGLYLGF-VFSAGAGAIEAYIEKVSRN--------SNFEYGKARMFGCV 144 (396)
T ss_pred hHH------------------HHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHhhhh--------cccccchhhhhccc
Confidence 100 00012234455667778 8887788777766553211 23456677778899
Q ss_pred HHHHHHhhhheeeeccccccchhHHHHHHHHHHHH
Q 044630 161 VLLITSTIVAYVQTVSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 161 G~~ig~~~~~~l~~~gw~~~F~i~~~~~~l~~~~~ 195 (343)
|..+|+.+++.+.+.+|+..|.+.+++.++..++.
T Consensus 145 g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~ 179 (396)
T TIGR00882 145 GWALCASIAGILFSIDPQIVFWLGSGFALILMLLL 179 (396)
T ss_pred HHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHH
Confidence 99999999998867899999998877665554333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=117.62 Aligned_cols=158 Identities=12% Similarity=0.076 Sum_probs=118.0
Q ss_pred hhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044630 5 ERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLR 84 (343)
Q Consensus 5 e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~ 84 (343)
.-++++++..++|.|+++++|++..+++.+.+.+.....++.+++|+++||+ |||+.+.....+..+.+.+....+
T Consensus 217 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~~~~--- 292 (394)
T PRK03699 217 YILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVLMYLFVNTD--- 292 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHcC---
Confidence 4456788889999999999999999999999999999999999999999995 999988776532222222221111
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLI 164 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~i 164 (343)
+.....+..++.|+ +.++..+...++..++.+++ ++...++.+.+.++|+.+
T Consensus 293 --------------------~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~g~~i 344 (394)
T PRK03699 293 --------------------DPSHLLYAILGLGF-FSSAIYTTIITLGSQQTKVA-------SPKLVNFILTCGTIGTML 344 (394)
T ss_pred --------------------CchHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCC-------CHHHHHHHHHhhhHHHHH
Confidence 12334445566777 77777777777777776533 234457777888999999
Q ss_pred HHhhhheeee-ccccccchhHHHHHHHHHHH
Q 044630 165 TSTIVAYVQT-VSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 165 g~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~ 194 (343)
+|.+.|++.+ .||+..|.+.+++.+++.+.
T Consensus 345 ~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 345 TFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 9999999988 89999998777766665443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-11 Score=125.71 Aligned_cols=152 Identities=9% Similarity=0.104 Sum_probs=115.6
Q ss_pred hHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 044630 13 MAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEE 92 (343)
Q Consensus 13 ~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~ 92 (343)
.+.+..++.+++|++..+++.+.+++.++..++.+++|+++|| +|||++++++.++..+...+.++.+
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~----------- 253 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQ----------- 253 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 3445566777899999999999999999999999999999999 5999999988722222222222212
Q ss_pred ccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhee
Q 044630 93 RIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYV 172 (343)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l 172 (343)
+.+.+++++++.|+ |.|+..|...++++|.++++ .|+..++++..+..+|.++++.++.++
T Consensus 254 ------------s~~~llv~R~l~G~-g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 254 ------------GYGFFLFCRLLSGF-GIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred ------------hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999 99999999999999998753 388888888888888888887654332
Q ss_pred e-------------e-ccccccchhHHHHHHHHHHHH
Q 044630 173 Q-------------T-VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 173 ~-------------~-~gw~~~F~i~~~~~~l~~~~~ 195 (343)
. . .+||+.|++.++..+++++..
T Consensus 315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred HHhccchhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 1 1 478998888777665554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.9e-11 Score=115.90 Aligned_cols=123 Identities=14% Similarity=0.100 Sum_probs=93.5
Q ss_pred HHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCcccc
Q 044630 18 VYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERI 94 (343)
Q Consensus 18 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~~~ 94 (343)
..+++++|++..+++...+.+..+..++.++.|.++||+ ||||++.++. .++.++.......
T Consensus 50 p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~~l~~~~~~a-------------- 114 (438)
T PRK10133 50 PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEI-------------- 114 (438)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhc--------------
Confidence 345789999999999999999999999999999999995 9999999987 3333322111211
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhe
Q 044630 95 HGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAY 171 (343)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~ 171 (343)
.+.+.+++++++.|+ |.|...+..+++++|..+++ ++....+.+.....+|..+|+.+++.
T Consensus 115 ---------~~~~~ll~~r~l~G~-g~g~~~~~~~~~v~~~~~~~------~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 115 ---------MNYTLFLVGLFIIAA-GLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred ---------CCHHHHHHHHHHHHH-HHHHHHhhHHHHHHHhCChh------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 146788899999999 99999999999999864322 13334566667777788777776543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.6e-11 Score=115.19 Aligned_cols=152 Identities=9% Similarity=0.048 Sum_probs=113.9
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLR 84 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~ 84 (343)
.++...+...++ .+.+++|.+..+.+.+.+.+.....++.+++|+++||+ ||||++.++. +.+...+.. ...+
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~~~~-~~~~--- 89 (393)
T PRK11195 16 ALADNALLFAAI-ALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGCLLM-LFGI--- 89 (393)
T ss_pred HHHHHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHHHHH-HHHH---
Confidence 333333333333 34678999999999999999999999999999999995 9999999887 222211111 1101
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLI 164 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~i 164 (343)
+ .++.+++.|+ +.|...|...+++.|.++++ +|.++.++.....++|.++
T Consensus 90 --------------------~---~~~~r~l~G~-~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~~~~~~~~~~ 139 (393)
T PRK11195 90 --------------------H---PLLAYGLVGI-GAAAYSPAKYGILTELLPGE------KLVKANGWMEGSTIAAILL 139 (393)
T ss_pred --------------------H---HHHHHHHHHH-HHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHH
Confidence 1 2566788999 99999999999999999754 3899999999999999999
Q ss_pred HHhhhheeeeccccccchhHHHHHHHHHH
Q 044630 165 TSTIVAYVQTVSWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 165 g~~~~~~l~~~gw~~~F~i~~~~~~l~~~ 193 (343)
||.++|++.+..|+..|.+.+...+++.+
T Consensus 140 Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~ 168 (393)
T PRK11195 140 GTVLGGALADPHAEAALAVCALIYLLAAL 168 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998884477777766655444433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.2e-11 Score=117.16 Aligned_cols=151 Identities=9% Similarity=0.052 Sum_probs=109.6
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCCccccccccCCCC
Q 044630 24 YNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQL-RPPHCTNEERIHGQCIGPN 102 (343)
Q Consensus 24 lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~-~~~~c~~~~~~~~~~~~~~ 102 (343)
+|.+..+.+.+.+.+.++..++++++|+++||+ ||||++.++.++..+.....++ +.+ ... . ...+
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~-~~~~~~~----------~-~~~~ 116 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAW-PEFGFTS----------I-GPDN 116 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHh-hcccccc----------c-cccc
Confidence 489999999999999999999999999999995 9999999887221111111111 100 000 0 0001
Q ss_pred cchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhee--------ee
Q 044630 103 RNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYV--------QT 174 (343)
Q Consensus 103 ~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l--------~~ 174 (343)
......+++++++.|+ |.|+..+...++++|.++++ +|+..++.+..+..+|.++++.+...+ .+
T Consensus 117 ~~~~~~l~~~R~l~G~-~~g~~~~~~~~~i~e~~~~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 189 (479)
T PRK10077 117 TGYVPEFVIYRIIGGI-GVGLASMLSPMYIAEIAPAH------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLN 189 (479)
T ss_pred hhHHHHHHHHHHHHhh-hHhHHhhHHHHHHHhhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 1235667889999999 99999999999999999854 278888888888899988887665432 23
Q ss_pred -ccccccchhHHHHHHHHHHH
Q 044630 175 -VSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 175 -~gw~~~F~i~~~~~~l~~~~ 194 (343)
.|||+.|.+.++..++.++.
T Consensus 190 ~~gWr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 190 TDGWRYMFASEAIPALLFLML 210 (479)
T ss_pred cCChHHHHHHHHHHHHHHHHH
Confidence 79999999877766555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-10 Score=111.15 Aligned_cols=156 Identities=16% Similarity=0.201 Sum_probs=108.5
Q ss_pred hhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHH--HHHHHHHHHHhhcCCCC
Q 044630 11 GIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAY----IGKFVTIVLGF--LLGMLMVTLTAIVPQLR 84 (343)
Q Consensus 11 g~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~----lGr~~~i~~~~--~~g~~~l~~~~~~~~~~ 84 (343)
++.......+.+++|+|.++.+..... .... ...+++|.++||+ +||||.+++.. ..+...+.+ ++.+.
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~-~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l-~~~~~-- 79 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPY-SLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL-SFLVP-- 79 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHH-HHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH-HcCCc--
Confidence 344444555556789999999988644 3333 3488999999996 49999865443 222222222 22221
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLI 164 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~i 164 (343)
..+.+.++....+.++ +.+...+...++++|.++++ +|+.+.++...+.++|.++
T Consensus 80 ------------------~~~l~~l~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~ 134 (356)
T TIGR00901 80 ------------------STDLPLLAGLAFLIAF-FSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLL 134 (356)
T ss_pred ------------------chhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHH
Confidence 1234445544456667 77788888899999998653 3788889989999999999
Q ss_pred HHhhhheeee-cc--------ccccchhHHHHHHHHHHHHH
Q 044630 165 TSTIVAYVQT-VS--------WAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 165 g~~~~~~l~~-~g--------w~~~F~i~~~~~~l~~~~~~ 196 (343)
++.+++++.+ .| ||..|.+.++..++++++.+
T Consensus 135 ~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 135 SGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 9999888877 66 99999998887776655443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-11 Score=118.26 Aligned_cols=144 Identities=14% Similarity=0.165 Sum_probs=114.6
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCCCC
Q 044630 23 EYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPN 102 (343)
Q Consensus 23 ~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 102 (343)
++|++..+.+.+.+.+..+..++.+++|+++||+ |||+++.++.++..+...+.....
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--------------------- 127 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAA--------------------- 127 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHH---------------------
Confidence 6889999999999999999999999999999995 999999888722221111111100
Q ss_pred cchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-c-ccccc
Q 044630 103 RNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-V-SWAWG 180 (343)
Q Consensus 103 ~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~-gw~~~ 180 (343)
......+++.+++.|+ +.|...|....+++|.++++ +|+++.++++.+.++|.++++.+.+++.+ . ||+..
T Consensus 128 ~~~~~~l~~~r~~~G~-~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~ 200 (465)
T TIGR00894 128 GGGIALVVFCRVIQGL-AQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI 200 (465)
T ss_pred HcCchHHHHHHHHHHH-hcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 0124567888999999 99999999999999998754 38999999999999999999999999887 5 99999
Q ss_pred chhHHHHHHHHHHHH
Q 044630 181 FTIPTVCLFCGLVLL 195 (343)
Q Consensus 181 F~i~~~~~~l~~~~~ 195 (343)
|.+.++..++..++.
T Consensus 201 f~i~~~~~~~~~~~~ 215 (465)
T TIGR00894 201 FYVFGIVGCAWSLLW 215 (465)
T ss_pred hhhhhHHHHHHHHHH
Confidence 999887655544433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-11 Score=114.78 Aligned_cols=168 Identities=15% Similarity=0.130 Sum_probs=121.4
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLR 84 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~ 84 (343)
.+++.++..+++.|+.+ .|++ +++.....+.++..++.++.|+++||+ ||||.+..+. ..+... .+....+
T Consensus 229 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~-~~~~~~~--- 300 (399)
T PRK05122 229 SIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGL-LLLWLAP--- 300 (399)
T ss_pred HHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHH-HHHHHhc---
Confidence 34566677788888764 4663 445556677778888899999999995 9999888776 222211 1111111
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLI 164 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~i 164 (343)
+.+.+++...+.|+ |.+...+...+...|.++++ .|++.+++++...++|..+
T Consensus 301 --------------------~~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~ 353 (399)
T PRK05122 301 --------------------SPWMALIGAALTGF-GFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLGI 353 (399)
T ss_pred --------------------cHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHH
Confidence 23455667778888 88888877777777766532 4889999999999999999
Q ss_pred HHhhhheeee-ccccccchhHHHHHHHHHHHHHhccceEEEecCC
Q 044630 165 TSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAE 208 (343)
Q Consensus 165 g~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~ 208 (343)
++.+.+++.+ .||+..|.+.+++.+++++..+..+++.+|+.|+
T Consensus 354 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (399)
T PRK05122 354 TGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRAVPE 398 (399)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 9999999988 8999999998888877777666656665555443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.7e-11 Score=113.00 Aligned_cols=152 Identities=12% Similarity=0.099 Sum_probs=114.3
Q ss_pred HhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 044630 8 GSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPH 87 (343)
Q Consensus 8 ~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~ 87 (343)
.++.....+...+.+++|++..+++.+.+.+.....++.++.|+++||+ ||||++.++.++..+..... ..+
T Consensus 14 ~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~------ 85 (355)
T TIGR00896 14 PALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP------ 85 (355)
T ss_pred CccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc------
Confidence 3444444455567778999999999999999999999999999999995 99999998872211111111 111
Q ss_pred CCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 044630 88 CTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITST 167 (343)
Q Consensus 88 c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~ 167 (343)
+.+.+++.+++.|+ |.|...+.......|.+++ +|++..+++..+.++|..+++.
T Consensus 86 -----------------~~~~l~~~~~~~g~-g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~ 140 (355)
T TIGR00896 86 -----------------GTALLFAGTALIGV-GIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAA 140 (355)
T ss_pred -----------------cHHHHHHHHHHHHH-HHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999 9888888888888887742 2788889999999999999999
Q ss_pred hhheeee-c--cccccchhHHHHHHHHH
Q 044630 168 IVAYVQT-V--SWAWGFTIPTVCLFCGL 192 (343)
Q Consensus 168 ~~~~l~~-~--gw~~~F~i~~~~~~l~~ 192 (343)
+.+++.+ . +|+..|.+.++..++..
T Consensus 141 ~~~~l~~~~~~~w~~~f~~~~~~~~~~~ 168 (355)
T TIGR00896 141 ATVPLAQHSGGHWQQALAWWALPALLAL 168 (355)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 8888766 3 39999887665544443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-11 Score=120.88 Aligned_cols=148 Identities=11% Similarity=0.055 Sum_probs=114.3
Q ss_pred HHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCccccc
Q 044630 17 TVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTNEERIH 95 (343)
Q Consensus 17 ~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~~~~~~ 95 (343)
...+.+++|++.++.+.+.+.+.....++.+++|+++||+ ||||++.++. ..+...+.++.. ..
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~-~~------------- 116 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGAS-LG------------- 116 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHH-Hh-------------
Confidence 3456678999999999999999999999999999999995 9999998876 333332222211 10
Q ss_pred cccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-
Q 044630 96 GQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT- 174 (343)
Q Consensus 96 ~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~- 174 (343)
. ...+.+.+++.+.+.|+ +.|...|...++++|.+++++ |++.++++..+.++|.++++.+..++.+
T Consensus 117 ---~--~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~ 184 (467)
T PRK09556 117 ---S--GSVSLGLMIALWALSGF-FQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANY 184 (467)
T ss_pred ---c--ccchHHHHHHHHHHHHH-HHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence 0 01246788889999999 999999999999999998653 7888899888999999999888766544
Q ss_pred c---cccccchhHHHHHHHH
Q 044630 175 V---SWAWGFTIPTVCLFCG 191 (343)
Q Consensus 175 ~---gw~~~F~i~~~~~~l~ 191 (343)
. +|+..|.+.++..++.
T Consensus 185 ~~~~~~~~~f~~~g~~~~~~ 204 (467)
T PRK09556 185 FFDGHVIGMFIFPSIIALII 204 (467)
T ss_pred hccCcchhHHHHHHHHHHHH
Confidence 2 6888888766655443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.8e-11 Score=116.84 Aligned_cols=149 Identities=16% Similarity=0.026 Sum_probs=111.5
Q ss_pred HHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccc
Q 044630 18 VYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQ 97 (343)
Q Consensus 18 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~ 97 (343)
..+.+++|++..+++.+.+.+.....++.+++|+++|| +|||++++.+.++..+...+.++.+
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~---------------- 105 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS---------------- 105 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence 34557899999999999999999999999999999999 5999999887622222122222211
Q ss_pred cCCCCcchHHHHHH-HHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-c
Q 044630 98 CIGPNRNQLAFLHV-AMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-V 175 (343)
Q Consensus 98 ~~~~~~~~~~~l~~-~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~ 175 (343)
+.+.+++ .+.+.|+ |.|...+...+.+.+.+++ +|+++.++.+.+.++|..+++.+.+++.+ .
T Consensus 106 -------~~~~l~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~-------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~ 170 (455)
T TIGR00892 106 -------NVIELYLTAGFITGL-GLAFNFQPSLTMLGKYFYR-------RRPLANGLAMAGSPVFLSTLAPLNQYLFESF 170 (455)
T ss_pred -------hHHHHHHHHHHHHHh-cchhhhhHHHHHHHHHHHh-------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 2344443 3467788 8887666666777887742 27889999999999999999999999888 9
Q ss_pred cccccchhHHHHHHHHHHHHHhc
Q 044630 176 SWAWGFTIPTVCLFCGLVLLFAG 198 (343)
Q Consensus 176 gw~~~F~i~~~~~~l~~~~~~~~ 198 (343)
||++.|.+.+++.+++.+..++.
T Consensus 171 gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 171 GWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888766655444333
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.7e-11 Score=117.12 Aligned_cols=145 Identities=17% Similarity=0.286 Sum_probs=113.8
Q ss_pred HhhHhcCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccc
Q 044630 19 YLLNEYNVS---QAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIH 95 (343)
Q Consensus 19 yl~~~lg~s---~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~ 95 (343)
-+.+++|++ ..+.+...+++.++..++.++.|+++||+ |||+++.++.++..+...+.++.+
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~-------------- 178 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP-------------- 178 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc--------------
Confidence 355689998 89999999999999999999999999995 999999988733222222233322
Q ss_pred cccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeeec
Q 044630 96 GQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQTV 175 (343)
Q Consensus 96 ~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~~ 175 (343)
+.+.+++.+++.|+ +.|+..+...+++.|.+++++ |+...+++..+..+|.++++.+..++.
T Consensus 179 ---------~~~~~~~~r~l~G~-~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~-- 240 (505)
T TIGR00898 179 ---------NYTVFLVFRLLVGM-GIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIP-- 240 (505)
T ss_pred ---------cHHHHHHHHHHHHh-hccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 46778889999999 999999999999999997642 777777777888899988888766554
Q ss_pred cccccchhHHHHHHHHHHHHH
Q 044630 176 SWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 176 gw~~~F~i~~~~~~l~~~~~~ 196 (343)
+||+.|.+.++..++..+..+
T Consensus 241 ~wr~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 241 DWRWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 499999988877665554443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=109.83 Aligned_cols=155 Identities=12% Similarity=0.182 Sum_probs=114.6
Q ss_pred HhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 044630 8 GSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPH 87 (343)
Q Consensus 8 ~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~ 87 (343)
.+......++.|. +++|++..+++.+...+.....++.+++|+++||+ |||+.+.++..+..+...+....+.
T Consensus 220 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~----- 292 (377)
T TIGR00890 220 SGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMAAMLFIPM----- 292 (377)
T ss_pred HHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHccc-----
Confidence 3334445555664 56899999999999999999999999999999995 9999988876222221111212121
Q ss_pred CCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 044630 88 CTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITST 167 (343)
Q Consensus 88 c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~ 167 (343)
.....++....+.++ +.|...+..+++..|.++++ +|++.+++++...++|..+++.
T Consensus 293 ----------------~~~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~g~~~~~~ 349 (377)
T TIGR00890 293 ----------------LNDVLFLATVALVFF-TWGGTISLFPSLVSDIFGPA------NSAANYGFLYTAKAVAGIFGGL 349 (377)
T ss_pred ----------------chhHHHHHHHHHHHH-HhccchhccHHHHHHHhhhh------hhhhHhHHHHHHHHHHHHHHHH
Confidence 112234445566777 78888888888899988754 3888999999999999999999
Q ss_pred hhheeee-ccccccchhHHHHHHHHH
Q 044630 168 IVAYVQT-VSWAWGFTIPTVCLFCGL 192 (343)
Q Consensus 168 ~~~~l~~-~gw~~~F~i~~~~~~l~~ 192 (343)
+.+++.+ .||+..|.+.+++.++++
T Consensus 350 ~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 350 IASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999988 999999998887766654
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=112.34 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=111.5
Q ss_pred hhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 044630 9 SFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHC 88 (343)
Q Consensus 9 ~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c 88 (343)
++....+++.|+++++|++..+++.+.+...+...++.+++|+++||+ |||+.+..+.......+......+
T Consensus 232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~------- 303 (393)
T PRK15011 232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYAGMLMAH------- 303 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 344456788999999999999999888877777788899999999995 999988766522222111111101
Q ss_pred CCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 044630 89 TNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTI 168 (343)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~ 168 (343)
+.+.+...+++.++ +.|...+...++..|.++++ ++++.+++....++|..+++.+
T Consensus 304 ----------------~~~~~l~~~~l~~~-~~g~~~~~~~~~~~~~~p~~-------~g~~~~~~~~~~~lg~~~g~~l 359 (393)
T PRK15011 304 ----------------SPAILLGLQLLNAI-YIGILGGIGMLYFQDLMPGQ-------AGSATTLYTNTSRVGWIIAGSL 359 (393)
T ss_pred ----------------hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCC-------cchHHHHHHHHHHHHHHHHHHH
Confidence 22334444455555 55555555566677776532 6778888888889999999999
Q ss_pred hheeee-ccccccchhHHHHHHHHHHHHHh
Q 044630 169 VAYVQT-VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 169 ~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
+|++.+ .||+..|.+.+++.++++++.+.
T Consensus 360 ~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 360 AGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999 89999999888877777665553
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=110.60 Aligned_cols=156 Identities=16% Similarity=0.176 Sum_probs=115.8
Q ss_pred hhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 044630 9 SFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHC 88 (343)
Q Consensus 9 ~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c 88 (343)
+......++.|+++++|.+..+++.+.....+....+.+++|+++||+ |||+.+.++.+++.+........+
T Consensus 215 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~------- 286 (375)
T TIGR00899 215 NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN------- 286 (375)
T ss_pred HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH-------
Confidence 334456778899999999999999888777777777889999999995 999998877633222221111101
Q ss_pred CCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 044630 89 TNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTI 168 (343)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~ 168 (343)
+.+.++....+.++ +.|...+...++..|..+++ +++++++++...++|..+++.+
T Consensus 287 ----------------~~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~g~~~ 342 (375)
T TIGR00899 287 ----------------SLWALLMLQLLNAI-FIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTGRVGWIIAGSV 342 (375)
T ss_pred ----------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHHHHHHHH
Confidence 23445555566677 77777777777777876532 5688899999999999999999
Q ss_pred hheeee-ccccccchhHHHHHHHHHHHHH
Q 044630 169 VAYVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 169 ~~~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
.+++.+ .||+..|.+.+++.+++.+..+
T Consensus 343 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 343 GGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 999988 8999999998888777766554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.5e-11 Score=115.40 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=113.6
Q ss_pred HHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCcccc
Q 044630 16 FTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTNEERI 94 (343)
Q Consensus 16 L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~~~~~ 94 (343)
...++++ +|++..+.+.+.+++..+..++.+++|+++||+ |||+.+.++. +.+...+. ....+..
T Consensus 49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~-~~~~~~~----------- 114 (438)
T TIGR00712 49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLL-MGFVPWA----------- 114 (438)
T ss_pred hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHH-Hhccccc-----------
Confidence 3456665 599999999999999999999999999999995 9999988876 22222221 1111210
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhe-ee
Q 044630 95 HGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAY-VQ 173 (343)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~-l~ 173 (343)
..+...+++.+++.|+ +.|...+.....+.|.+++++ |++++++++.+.++|+.+++.+.+. +.
T Consensus 115 --------~~~~~~l~~~~~l~g~-~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~ 179 (438)
T TIGR00712 115 --------TSSIAIMFVLLFLNGW-FQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMA 179 (438)
T ss_pred --------cchHHHHHHHHHHHHH-HhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 0134566777888999 999988888899999987643 8899999999999999998887765 44
Q ss_pred e-ccccccchhHHHHHHHHHHH
Q 044630 174 T-VSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 174 ~-~gw~~~F~i~~~~~~l~~~~ 194 (343)
+ .+||..|.+.++..++..+.
T Consensus 180 ~~~~w~~~f~~~~~~~~i~~~~ 201 (438)
T TIGR00712 180 WFNDWHAALYFPAICAIIVALF 201 (438)
T ss_pred HhhhhHHHHHHHHHHHHHHHHH
Confidence 4 79999999887776654433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-11 Score=113.72 Aligned_cols=165 Identities=18% Similarity=0.183 Sum_probs=130.3
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCCCC
Q 044630 23 EYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPN 102 (343)
Q Consensus 23 ~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 102 (343)
.++-++++.|.+.+.+.....+..++.|.+.|| +|+|-.+++|..+......+.++.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg---------------------- 156 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFG---------------------- 156 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence 456778999999999999999999999999999 699999998872211111122221
Q ss_pred cchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-ccccccc
Q 044630 103 RNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VSWAWGF 181 (343)
Q Consensus 103 ~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~gw~~~F 181 (343)
.+.+.++++|.+.|+ |.+....+-.++++|-|++++ .|+++++..-.++.+|.++||.++|.+.+ .|++..|
T Consensus 157 -~sy~~l~vAR~LQgv-gsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF 229 (464)
T KOG3764|consen 157 -NSYPMLFVARSLQGV-GSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF 229 (464)
T ss_pred -chhHHHHHHHHHhhh-hHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence 246789999999999 999999999999999998763 38999999999999999999999999999 9999999
Q ss_pred hhHHHHHHHHHHHHHhccceEEEe---cCCCCchhHHHH
Q 044630 182 TIPTVCLFCGLVLLFAGMRIYVLV---IAEGSLFSSIVQ 217 (343)
Q Consensus 182 ~i~~~~~~l~~~~~~~~~~~~~~~---~p~~~~l~~~~~ 217 (343)
++.++++++...+-++..+.++.. .+++.|+.++.+
T Consensus 230 lVL~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~Ll~ 268 (464)
T KOG3764|consen 230 LVLAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSLLM 268 (464)
T ss_pred HHHHHHHHHHHHHHHheeCccccCccccccCccHHHHHh
Confidence 999988777655544443333322 356667766543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=114.17 Aligned_cols=149 Identities=14% Similarity=0.155 Sum_probs=108.9
Q ss_pred HHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccc
Q 044630 15 IFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERI 94 (343)
Q Consensus 15 ~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~ 94 (343)
....|+.++ |++..+.+.+.+.+.+...++.+++|+++||+ |||+++.++.++..+...+.++.+..
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~----------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA----------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence 344577777 99999999999999999999999999999995 99999988872222211222221110
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH-HHHHhhhheee
Q 044630 95 HGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL-LITSTIVAYVQ 173 (343)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~-~ig~~~~~~l~ 173 (343)
..+.+.+++.+++.|+ +.|...|.......|+++++ +|++++++++.+.++|+ +.++.+...+.
T Consensus 117 --------~~~~~~~~~~~~l~gi-~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 117 --------TSSIAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred --------cccHHHHHHHHHHHHH-HHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 0135667778888999 99988888888889988653 38889999889999886 44554433333
Q ss_pred e-ccccccchhHHHHHHHH
Q 044630 174 T-VSWAWGFTIPTVCLFCG 191 (343)
Q Consensus 174 ~-~gw~~~F~i~~~~~~l~ 191 (343)
. .||++.|.+.++..++.
T Consensus 182 ~~~gw~~~f~i~~~~~~~~ 200 (452)
T PRK11273 182 WFNDWHAALYMPAFAAILV 200 (452)
T ss_pred HhccHHHHHHHHHHHHHHH
Confidence 3 69999999877665554
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-11 Score=124.01 Aligned_cols=180 Identities=13% Similarity=0.199 Sum_probs=126.2
Q ss_pred hhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcC-CC--
Q 044630 10 FGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVP-QL-- 83 (343)
Q Consensus 10 yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~-~~-- 83 (343)
.|.......-+.++++++.++.+.+.+.+.++..++.++.|+++||+ ||+|.+.++. .+|.++.++.-+.. ..
T Consensus 49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~ 127 (633)
T TIGR00805 49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSY 127 (633)
T ss_pred HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHHHHHHHHhChHHhcCCccc
Confidence 34555555667778999999999999999999999999999999995 9999999887 33444333221100 00
Q ss_pred -------------CCCCCCCccc-------cccccCCCC--cchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCc
Q 044630 84 -------------RPPHCTNEER-------IHGQCIGPN--RNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTD 141 (343)
Q Consensus 84 -------------~~~~c~~~~~-------~~~~~~~~~--~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~ 141 (343)
...-|..... .+..|.... +.....+++++++.|+ |.+...+...+++.|.+++++
T Consensus 128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~Gi-G~~~~~~~~~~~i~d~~~~~~- 205 (633)
T TIGR00805 128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGI-GATPIFPLGISYIDDFAKSKN- 205 (633)
T ss_pred cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhc-cCCcchhcCchhhhccCCccc-
Confidence 0011210000 001232211 1134567789999999 999999999999999987653
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-c----------------------cccccchhHHHHHHHHHHHHHh
Q 044630 142 KGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-V----------------------SWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 142 ~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~----------------------gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
|+..+++++.+..+|.++|+++++++.+ + +|+.+|.+.+++.++..+.++.
T Consensus 206 -----~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 206 -----SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred -----cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999887654 2 2788898888766655444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=114.76 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=104.6
Q ss_pred HHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccc
Q 044630 18 VYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQ 97 (343)
Q Consensus 18 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~ 97 (343)
.++.+++|++..+.+.+.+.+..+..++.+++|+++||+ |||+++..+.++..+...+.++.+
T Consensus 60 ~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~---------------- 122 (476)
T PLN00028 60 PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTAPAVFCMSLVS---------------- 122 (476)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHhc----------------
Confidence 467788999999999998888888999999999999995 999999887622222222222211
Q ss_pred cCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee----
Q 044630 98 CIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ---- 173 (343)
Q Consensus 98 ~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~---- 173 (343)
+...+++.+++.|+ |.+...+ ...+++|.++++ +|+.+.++.+...++|+.+++.+.+.+.
T Consensus 123 -------s~~~l~~~r~l~G~-~~~~~~~-~~~~i~~~~~~~------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~ 187 (476)
T PLN00028 123 -------SATGFIAVRFFIGF-SLATFVS-CQYWMSTMFNGK------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIK 187 (476)
T ss_pred -------CHHHHHHHHHHHHH-HHHhhHH-HHHHHHHhcChh------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888898 8776543 456788888754 3788888887777788777766554431
Q ss_pred -----e-ccccccchhHHHHHHHHHHH
Q 044630 174 -----T-VSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 174 -----~-~gw~~~F~i~~~~~~l~~~~ 194 (343)
+ .|||+.|.+.+++.++..+.
T Consensus 188 ~~~~~~~~gWr~~f~i~g~l~l~~~l~ 214 (476)
T PLN00028 188 DAGAPSFTAWRIAFFVPGLLHIIMGIL 214 (476)
T ss_pred hcCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 2 48999999888766554433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-10 Score=113.51 Aligned_cols=162 Identities=16% Similarity=0.160 Sum_probs=111.9
Q ss_pred hhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH-HHHHHHHHHhhcCCC
Q 044630 5 ERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFL-LGMLMVTLTAIVPQL 83 (343)
Q Consensus 5 e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~-~g~~~l~~~~~~~~~ 83 (343)
..+.||++..+++.|+++.+|++..+++........+..++.+++|+++||+ |||+++.++.+ .....+.+......
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~- 339 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFVLAIPAFILINS- 339 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 3467899999999999999999998888877778888889999999999995 99999887762 11111111100010
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 044630 84 RPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLL 163 (343)
Q Consensus 84 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ 163 (343)
.+...+++++++.++ +.+...+...++..+.+|++. |+++.++.|...++++.
T Consensus 340 --------------------~~~~~~~~~~~~~g~-~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~~~~~~~~g~ 392 (490)
T PRK10642 340 --------------------NVIGLIFAGLLMLAV-ILNCFTGVMASTLPAMFPTHI------RYSALAAAFNISVLVAG 392 (490)
T ss_pred --------------------CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCcc------chHHHHHHHHHHHHHHH
Confidence 123455666666666 666556667778888887653 88888887766677778
Q ss_pred HHHhhhheeee--ccccccchhHHHHHHHHHHHH
Q 044630 164 ITSTIVAYVQT--VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 164 ig~~~~~~l~~--~gw~~~F~i~~~~~~l~~~~~ 195 (343)
++|.+.+++.+ .+|+..+.+..+..+++++..
T Consensus 393 ~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (490)
T PRK10642 393 LTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG 426 (490)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 89999998877 456655554444444443333
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-10 Score=105.09 Aligned_cols=162 Identities=20% Similarity=0.266 Sum_probs=131.0
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHHHhhcCC
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFV-TIVLGFLLGMLMVTLTAIVPQ 82 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~-~i~~~~~~g~~~l~~~~~~~~ 82 (343)
+...++......++.|+.+.+|.+..+.+...........++.++.|+++||+ |||+ .+.++..+..+........+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~- 263 (352)
T cd06174 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALGLLLLALAP- 263 (352)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhc-
Confidence 44566777788889999988899999999999999999999999999999995 9999 88777622222112221111
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
+.+..++...+.++ +.+...+...++..|..|++ +|++.++.+....++|.
T Consensus 264 ----------------------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 314 (352)
T cd06174 264 ----------------------SLALLLVALLLLGF-GLGFAFPALLTLASELAPPE------ARGTASGLFNTFGSLGG 314 (352)
T ss_pred ----------------------cHHHHHHHHHHHHH-HHhccchhHHHHHHhhcCHH------HHHHHHHHHHHHHHHHH
Confidence 24567778888999 99999999999999998753 38999999999999999
Q ss_pred HHHHhhhheeee-ccccccchhHHHHHHHHHHHHH
Q 044630 163 LITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 163 ~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
.+++.+.+++.+ .+|+..|.+.++..+++.+...
T Consensus 315 ~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 315 ALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 999999999988 9999999998888777766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.7e-10 Score=108.22 Aligned_cols=162 Identities=10% Similarity=0.040 Sum_probs=121.4
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRP 85 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~ 85 (343)
...+++...+++.|+.+++|++..+++.+...+.+...++.+++|+++||+ |||+.+......+.....+... +
T Consensus 218 ~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~l~~~-~---- 291 (390)
T PRK03545 218 VTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLLIAIALLLVCLLLLLPA-A---- 291 (390)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHHH-h----
Confidence 345566677788899888999999999999999999999999999999995 9876544333333332222211 1
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 044630 86 PHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLIT 165 (343)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig 165 (343)
.+.+.+++...+.|+ +.+...+...+.+.+..++ .++++++++....++|..+|
T Consensus 292 ------------------~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~~G 345 (390)
T PRK03545 292 ------------------NSEWHLSVLSIFWGI-AIMCIGLAMQVKVLKLAPD-------ATDVAMALFSGIFNIGIGAG 345 (390)
T ss_pred ------------------chHHHHHHHHHHHHH-HHhcchHHHHHHHHHhCCC-------cHHHHHHHHHHHHHHHHHHH
Confidence 124555666677788 8777777777777776542 26788888888889999999
Q ss_pred Hhhhheeee-ccccccchhHHHHHHHHHHHHHhcc
Q 044630 166 STIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGM 199 (343)
Q Consensus 166 ~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~ 199 (343)
+.+.|++.+ .|++..|.+.+++.+++++..+...
T Consensus 346 ~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 346 ALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999 9999999999888888777765443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-10 Score=114.06 Aligned_cols=156 Identities=13% Similarity=0.157 Sum_probs=102.3
Q ss_pred hhHHHHHHhhHhcCCChHH-HHH-----HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCC
Q 044630 12 IMAIFTVYLLNEYNVSQAY-VAA-----KFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLR 84 (343)
Q Consensus 12 ~~~~L~~yl~~~lg~s~~~-a~~-----~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~ 84 (343)
+.+....++.++++.+..+ .+. +.++...+..++++++|+++||+ |||+++.++. +.+.. ..+.++.|++.
T Consensus 34 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~l~~i~-~~~~a~~~~~~ 111 (490)
T PRK10642 34 VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAITIVIMSIS-TFCIGLIPSYA 111 (490)
T ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHH-HHHHHhcccHH
Confidence 3445556777777543321 111 23556677889999999999995 9999999987 22222 22233334210
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLI 164 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~i 164 (343)
. ..-.....+.+.+++.|+ |.|+..++..++++|.+|+++ |+...++...+.++|..+
T Consensus 112 ~---------------~g~~a~~~l~~~R~l~G~-g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~l 169 (490)
T PRK10642 112 T---------------IGIWAPILLLLCKMAQGF-SVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVL 169 (490)
T ss_pred H---------------HHHHHHHHHHHHHHHHHh-HhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHH
Confidence 0 000011247889999999 999999999999999998643 677777777777777777
Q ss_pred HHhhhhe----ee----e-ccccccchhHHHHHHHH
Q 044630 165 TSTIVAY----VQ----T-VSWAWGFTIPTVCLFCG 191 (343)
Q Consensus 165 g~~~~~~----l~----~-~gw~~~F~i~~~~~~l~ 191 (343)
|+.+... +. . .|||+.|.+.++..+++
T Consensus 170 g~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~ 205 (490)
T PRK10642 170 GAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG 205 (490)
T ss_pred HHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH
Confidence 7654432 21 2 79999999876544433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-10 Score=110.51 Aligned_cols=167 Identities=15% Similarity=0.096 Sum_probs=115.4
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-HHHhhcCC
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMV-TLTAIVPQ 82 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l-~~~~~~~~ 82 (343)
+..+++|++.++++.|+++.+|++......+.........++.+++|+++|| +||||++..+.+++.+.. .+......
T Consensus 261 ~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~ 339 (438)
T PRK09952 261 CELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGTLSAFPFFMALEA 339 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567788999999999999999998766555556666777888899999999 599999887762222111 11000000
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHH-HHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYT-TFTLV 161 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~-~~~iG 161 (343)
......+.....+.++ +.+...+...++.+|.+|.+ .|.++.++.|. +..+|
T Consensus 340 --------------------~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~e~~p~~------~r~tg~g~~~~~~~~lg 392 (438)
T PRK09952 340 --------------------QSIFWIVFFSIMLANI-AHDMVVCVQQPMFTEMFGAS------YRYSGAGVGYQVASVVG 392 (438)
T ss_pred --------------------CChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCcc------hhHHHHhHHHHHHHHHH
Confidence 0122333444555567 77777788889999999864 37778887664 45589
Q ss_pred HHHHHhhhheeee-c--cccccchhHHHHHHHHHHHHHhc
Q 044630 162 LLITSTIVAYVQT-V--SWAWGFTIPTVCLFCGLVLLFAG 198 (343)
Q Consensus 162 ~~ig~~~~~~l~~-~--gw~~~F~i~~~~~~l~~~~~~~~ 198 (343)
+.++|.+.+++.+ . +|...|.+.+++.+++++..+..
T Consensus 393 g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 393 GGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999877 3 48777877777766666554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-10 Score=112.11 Aligned_cols=162 Identities=16% Similarity=0.098 Sum_probs=111.9
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRP 85 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~ 85 (343)
...++++..++|.|+++++|++..+++.....+..+..++.+++|+++||+ |||+.+.....+......+.....
T Consensus 271 ~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~~~~~~~~~---- 345 (467)
T PRK09556 271 YIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALIIFTLGVYQH---- 345 (467)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHHHHHHh----
Confidence 345677888999999999999999999999989999999999999999995 998877665411111111111101
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH-HHHH
Q 044630 86 PHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL-VLLI 164 (343)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i-G~~i 164 (343)
..+....++.+++.|+ +..+..........|.+|++ .++++.++.....++ |+.+
T Consensus 346 -----------------~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~p~~------~~g~a~gi~~~~g~l~g~~~ 401 (467)
T PRK09556 346 -----------------ATSEYMYLASLFALGF-LVFGPQLLIGVAAVGFVPKK------AIGVANGIKGTFAYLFGDSF 401 (467)
T ss_pred -----------------cCcHHHHHHHHHHHHH-HHhhHHHHHHHHHHhhcchh------hHHHHHHHHHHHHHHHhHHH
Confidence 0123344455555554 33222222235566877653 389999999888886 7789
Q ss_pred HHhhhheeee-------------ccccccchhHHHHHHHHHHHHH
Q 044630 165 TSTIVAYVQT-------------VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 165 g~~~~~~l~~-------------~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
+|.+.|++.| .||+.+|.+.+++.+++++..+
T Consensus 402 ~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 402 AKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 9999998866 4699999888777777765554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-10 Score=111.66 Aligned_cols=151 Identities=13% Similarity=0.097 Sum_probs=118.8
Q ss_pred HHHHHHhhHhcCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 044630 14 AIFTVYLLNEYNVSQAY-VAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEE 92 (343)
Q Consensus 14 ~~L~~yl~~~lg~s~~~-a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~ 92 (343)
+.+..|+.+++|++.++ .+.+.++|.....++.+++|+++|| +|.|+++.++.+...+...+..+.
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa------------ 112 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLG------------ 112 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHH------------
Confidence 44567999999999999 9999999999999999999999999 599999998873322222222221
Q ss_pred ccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhee
Q 044630 93 RIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYV 172 (343)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l 172 (343)
.+...+.+.+++.|+ +.|... ....++...+|++ +|+++.+++..+.++|.++++.+++++
T Consensus 113 -----------~Sl~~L~i~R~llGv-aEA~~~-A~~syI~~WfP~k------ER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 113 -----------TSVWHMQLMEVFYSV-TMAARI-AYSSYIFSLVPPS------RYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred -----------HHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 146788899999999 999999 8999999999853 388999999999999999999999984
Q ss_pred eeccccccc---hhHHHHHHHHHHHHH
Q 044630 173 QTVSWAWGF---TIPTVCLFCGLVLLF 196 (343)
Q Consensus 173 ~~~gw~~~F---~i~~~~~~l~~~~~~ 196 (343)
...||+.-+ .|+.....+++++-+
T Consensus 174 ~s~gWr~y~~Ln~Isl~s~~~a~~~a~ 200 (511)
T TIGR00806 174 VTLGWISYSTLNIISLVFMTFSVFLAL 200 (511)
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 447887544 345555555554433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.9e-10 Score=106.86 Aligned_cols=156 Identities=12% Similarity=0.127 Sum_probs=110.2
Q ss_pred hhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHH-HHHHH-HHHHHHHHHHhhcCC
Q 044630 9 SFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAY----IGKFVT-IVLGF-LLGMLMVTLTAIVPQ 82 (343)
Q Consensus 9 ~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~----lGr~~~-i~~~~-~~g~~~l~~~~~~~~ 82 (343)
+.=...-+|.|++++ |++.++.+.+..+... ++..+++|+++||+ +||||. +.++. ..+..+. ...+.+.
T Consensus 15 ~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~-~l~~~~~ 90 (402)
T PRK11902 15 LALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA-AMAFCPP 90 (402)
T ss_pred HHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH-HHHhcCc
Confidence 333456788888864 9999999998655543 79999999999994 188874 55544 2222222 2222221
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
..+.+.+++..++.++ ..+...+...++..|.++++ +|+++.++...+.++|.
T Consensus 91 --------------------~~~~~~l~~~~~~~~~-~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~~g~~~g~ 143 (402)
T PRK11902 91 --------------------HAALWPLAGLAVLVAF-LSASQDIVFDAYSTDVLHPE------ERGAGAAVKVLGYRLAM 143 (402)
T ss_pred --------------------cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChh------hhhHHHHHHHHHHHHHH
Confidence 1234555555556677 78888899999999998754 27888888888889999
Q ss_pred HHHHhhhheeee--ccccccchhHHHHHHHHHHHH
Q 044630 163 LITSTIVAYVQT--VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 163 ~ig~~~~~~l~~--~gw~~~F~i~~~~~~l~~~~~ 195 (343)
++++.+.+++.+ .||+..|.+.++..++..+..
T Consensus 144 i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~ 178 (402)
T PRK11902 144 LVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT 178 (402)
T ss_pred HHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence 999888888777 599999999887766554443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-10 Score=110.52 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=114.3
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHH-HHHHH-HHHHHHHHHH
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAY---IGKFVT-IVLGF-LLGMLMVTLT 77 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~---lGr~~~-i~~~~-~~g~~~l~~~ 77 (343)
+...+.+..+..+++.|+++++|++.++++.+.++..+...+..++.|+++||. +||||. +.++. ..+.... +.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~-~~ 87 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLV-LL 87 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHH-HH
Confidence 445666777778899999999999999999999999999999999999999983 588665 44444 2222211 11
Q ss_pred hhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHH
Q 044630 78 AIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTT 157 (343)
Q Consensus 78 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~ 157 (343)
...|+.. .......+++...+.++ +.+.......++.+|..++ ++ +|++..++...+
T Consensus 88 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~--~~---~R~~~~~~~~~~ 144 (437)
T TIGR00792 88 FTTPDFS-----------------ATGKLVYAYITYILLGL-FYSFVNIPYWSLVPAITLD--PR---ERESLSTFRRFG 144 (437)
T ss_pred HhCCCCC-----------------cchHHHHHHHHHHHHHH-HHHhhcccHhhCcccccCC--HH---HHHHHHHHHHHH
Confidence 2223210 01123444555566677 7777777777888887643 22 367777777777
Q ss_pred HHHHHHHHHhhhheee-------e-ccccccchhHHHHHHHHHHHHHh
Q 044630 158 FTLVLLITSTIVAYVQ-------T-VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 158 ~~iG~~ig~~~~~~l~-------~-~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
.++|++++..+.+.+. + .+|+..|.+.+++.++..++...
T Consensus 145 ~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 192 (437)
T TIGR00792 145 ATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFF 192 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHc
Confidence 7787766655443322 3 68999888877766555544433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-10 Score=122.21 Aligned_cols=139 Identities=14% Similarity=0.151 Sum_probs=106.0
Q ss_pred hhHHhhhhhHHHHHHhhHhcCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH---HHHHHHHHhh
Q 044630 5 ERLGSFGIMAIFTVYLLNEYNVSQA--YVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLL---GMLMVTLTAI 79 (343)
Q Consensus 5 e~~~~yg~~~~L~~yl~~~lg~s~~--~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~---g~~~l~~~~~ 79 (343)
..++..++...+..++..+++.+.. ..+++.+++.....++.+++|+++||+ |||++++++.++ +.++..+...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~~~~~~~~~~~~ 99 (1146)
T PRK08633 21 NAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEVGLTLLIVLAYY 99 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666677666776543 467888889999999999999999995 999999887622 2222222211
Q ss_pred cCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHH
Q 044630 80 VPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFT 159 (343)
Q Consensus 80 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~ 159 (343)
. .+.+.+++.+++.|+ +.|...+...++++|.+++++ |+++++++..+.+
T Consensus 100 ~-----------------------~~~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ 149 (1146)
T PRK08633 100 L-----------------------GWFWLAFAVTFLLGA-QSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTI 149 (1146)
T ss_pred H-----------------------ccHHHHHHHHHHHHH-HHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHH
Confidence 1 136778889999999 999999999999999997643 8889999999999
Q ss_pred HHHHHHHhhhheeee
Q 044630 160 LVLLITSTIVAYVQT 174 (343)
Q Consensus 160 iG~~ig~~~~~~l~~ 174 (343)
+|.++|+.+++++.+
T Consensus 150 ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 150 VAILAGTALFSFLFE 164 (1146)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888754
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.1e-10 Score=106.64 Aligned_cols=162 Identities=11% Similarity=0.174 Sum_probs=119.9
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCC
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQL 83 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~ 83 (343)
+..++|+++..+++.|+.+ +|++..+++...+.+.++..++.+++|+++|| +|||+.+.++..+..+...+....+.
T Consensus 216 ~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~~~~~~~~~- 292 (393)
T PRK09705 216 LINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGFCGFIWLPL- 292 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHccc-
Confidence 3456888999999999986 79999999999999999999999999999999 59999888776221111111111121
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 044630 84 RPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLL 163 (343)
Q Consensus 84 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ 163 (343)
+...+. ..+.++ |.|...|...+...++++++ +.+++.+++.+...++++.
T Consensus 293 ---------------------~~~~~~--~~l~g~-g~g~~~~~~~~~~~~~~~~~-----~~~g~~~g~~~~~~~~~~~ 343 (393)
T PRK09705 293 ---------------------QLPVLW--AMVCGL-GLGGAFPLCLLLALDHSVQP-----AIAGKLVAFMQGIGFIIAG 343 (393)
T ss_pred ---------------------hHHHHH--HHHHHH-hccchHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHH
Confidence 111221 234577 88888887777777776532 2478899999999999999
Q ss_pred HHHhhhheeee-c-cccccchhHHHHHHHHHHHHHh
Q 044630 164 ITSTIVAYVQT-V-SWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 164 ig~~~~~~l~~-~-gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
++|.+.+++.| . +|...|.+.+++.+++++..+.
T Consensus 344 ~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK09705 344 LAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR 379 (393)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 4 5889998888777666555444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.7e-10 Score=122.03 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH--HHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcchH
Q 044630 29 AYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF--LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQL 106 (343)
Q Consensus 29 ~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~--~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 106 (343)
...++..+++.+...++.+++|+++||+ |||+++.... .+....+.+..... .+.
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~----------------------~s~ 108 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL----------------------NSV 108 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH----------------------hhH
Confidence 3456777788899999999999999995 9999864422 11111111111100 146
Q ss_pred HHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-ccccccchhHH
Q 044630 107 AFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VSWAWGFTIPT 185 (343)
Q Consensus 107 ~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~gw~~~F~i~~ 185 (343)
+.+++++++.|+ +.+.+.|...+++.|.+++++ +..++++..++.++|.++||.+++++.+ .||+..|.+.+
T Consensus 109 ~~l~~~~~l~gi-~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~ 181 (1140)
T PRK06814 109 PLLFAALFLMGI-HSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLM 181 (1140)
T ss_pred HHHHHHHHHHHH-HHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 788999999999 999999999999999998653 8889999999999999999999999988 99999884444
Q ss_pred HHHHHHH
Q 044630 186 VCLFCGL 192 (343)
Q Consensus 186 ~~~~l~~ 192 (343)
+..++++
T Consensus 182 ~~~~~~~ 188 (1140)
T PRK06814 182 GIAVLGW 188 (1140)
T ss_pred HHHHHHH
Confidence 4433333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=104.16 Aligned_cols=165 Identities=11% Similarity=0.051 Sum_probs=116.5
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH--HHHHH--HHHHHHHHHHhh
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVT--IVLGF--LLGMLMVTLTAI 79 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~--i~~~~--~~g~~~l~~~~~ 79 (343)
+..+.++++..+++.|+.+.+|.+..+++.+.....+...++.+++|+++||+ |||+. +.... .++.+...+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (399)
T TIGR00893 226 LVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAIIAGLVLSLLMF 304 (399)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHHHHHHHHHHHH
Confidence 34556777888899999999999999999999999999999999999999995 98861 11111 112111111111
Q ss_pred cCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHH
Q 044630 80 VPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFT 159 (343)
Q Consensus 80 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~ 159 (343)
.... .......+....++. +..+..+...++..|.++++ .|++.++++....+
T Consensus 305 ~~~~--------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~ 357 (399)
T TIGR00893 305 ATNY--------------------VNIPYAALALVALGF-FGLGAGAIGWALISDNAPGN------IAGLTGGLINSLGN 357 (399)
T ss_pred Hhcc--------------------chhHHHHHHHHHHHH-hchhhhhHHHHHHHhhcChh------HHHHHHHHHHHHHH
Confidence 0100 011223333334444 33337888999999998754 38899999999999
Q ss_pred HHHHHHHhhhheeee-cc-ccccchhHHHHHHHHHHHHH
Q 044630 160 LVLLITSTIVAYVQT-VS-WAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 160 iG~~ig~~~~~~l~~-~g-w~~~F~i~~~~~~l~~~~~~ 196 (343)
+|..+++.+.+++.+ .| |+..|.+.++..+++.+..+
T Consensus 358 ~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 358 LGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 77 99999888877776665543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-10 Score=107.55 Aligned_cols=148 Identities=13% Similarity=0.008 Sum_probs=107.2
Q ss_pred hhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHHHhhcCCCCC
Q 044630 10 FGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF----VTIVLGFLLGMLMVTLTAIVPQLRP 85 (343)
Q Consensus 10 yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~----~~i~~~~~~g~~~l~~~~~~~~~~~ 85 (343)
.-+.+.++.|++ ++|.|..+.+.+++++.....++.+++|.++||+ ||+ +.+.++..+... .....
T Consensus 21 g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~--~~~~~------ 90 (382)
T PRK11128 21 GVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFAV--AFWFG------ 90 (382)
T ss_pred HHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHHH--HHHHh------
Confidence 334456778885 5799999999999999999999999999999995 983 333322211111 11110
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 044630 86 PHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLIT 165 (343)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig 165 (343)
..+.+.+++.+.+.++ +.+...|...++..|. .+ +|++.++......++|..+|
T Consensus 91 -----------------~~~~~~l~i~~~l~g~-~~~~~~~~~~a~~~~~-~~-------~~~~a~~~~~~~~~lg~~ig 144 (382)
T PRK11128 91 -----------------AHSFWLLFVAIGLFNL-FFSPLVPLTDALANTW-QK-------QIGLDYGKVRLWGSIAFVIG 144 (382)
T ss_pred -----------------cccHHHHHHHHHHHHH-HHcccccHHHHHHHHH-Hh-------hccCCcchHHHHHHHHHHHH
Confidence 0246777778888899 8888898888877765 22 14555666777778999999
Q ss_pred Hhhhheeee-ccccccchhHHHHHHHHHH
Q 044630 166 STIVAYVQT-VSWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 166 ~~~~~~l~~-~gw~~~F~i~~~~~~l~~~ 193 (343)
|.+++++.+ .||+..|.+.++..++.++
T Consensus 145 p~lgg~l~~~~g~~~~f~~~~~~~~~~~~ 173 (382)
T PRK11128 145 SALTGKLVSWFGEQAILWILTAGVASMLL 173 (382)
T ss_pred HHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence 999999988 8999999887765554433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=107.53 Aligned_cols=151 Identities=16% Similarity=0.217 Sum_probs=98.0
Q ss_pred HHHHHhhHhc--CCChHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCC
Q 044630 15 IFTVYLLNEY--NVSQAYVAAKF-----GAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPP 86 (343)
Q Consensus 15 ~L~~yl~~~l--g~s~~~a~~~~-----~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~ 86 (343)
..+.++.+++ +.++.. +.+. ++..++..++.++.|+++||+ |||+++.++. ..+.. ..+.++.|+...
T Consensus 44 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l~~~~~~~~~~-~~~~~~~~~~~~- 119 (438)
T PRK09952 44 TAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRMLMLTVWMMGIA-TALIGLLPSFST- 119 (438)
T ss_pred HHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHHHHHHHHHHHH-HHHHhcCCcHHH-
Confidence 3444555555 676653 3332 222334557778889999995 9999999887 22222 223333332100
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 044630 87 HCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITS 166 (343)
Q Consensus 87 ~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~ 166 (343)
........+++.+++.|+ |.|+..|...+++.|.+|+++ |+...+....+..+|.+++.
T Consensus 120 --------------~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~ 178 (438)
T PRK09952 120 --------------IGWWAPVLLVTLRAIQGF-AVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLST 178 (438)
T ss_pred --------------HHHHHHHHHHHHHHHHHh-hhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHH
Confidence 000012257788999999 999999999999999987642 66677777778888888876
Q ss_pred hhhheee--------e-ccccccchhHHHHHHH
Q 044630 167 TIVAYVQ--------T-VSWAWGFTIPTVCLFC 190 (343)
Q Consensus 167 ~~~~~l~--------~-~gw~~~F~i~~~~~~l 190 (343)
.+..++. + .|||..|.+.++..++
T Consensus 179 ~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 179 GLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 6554432 2 7999999988776444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.8e-10 Score=106.26 Aligned_cols=156 Identities=10% Similarity=0.002 Sum_probs=114.4
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRP 85 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~ 85 (343)
..++.+..+++.|+.+ .|++..+++.+...+.+...++.+++|+++||+ |||+.+.++. ..+..++.+. ..+
T Consensus 234 ~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~-~~~---- 306 (406)
T PRK11551 234 IVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALA-AAP---- 306 (406)
T ss_pred HHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHH-hcC----
Confidence 4556667778888875 799999999999999999999999999999995 9999988765 2222222111 111
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 044630 86 PHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLIT 165 (343)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig 165 (343)
+.+.+++..++.++ +.++..+...++..|.+++++ |++..++.+...++|..+|
T Consensus 307 -------------------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g 360 (406)
T PRK11551 307 -------------------SFAGMLLAGFAAGL-FVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGSMAG 360 (406)
T ss_pred -------------------cHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHHHHH
Confidence 23344455566777 777777888888999887643 8899999999999999999
Q ss_pred Hhhhheeee--ccccccchhHHHHHHHHHHHH
Q 044630 166 STIVAYVQT--VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 166 ~~~~~~l~~--~gw~~~F~i~~~~~~l~~~~~ 195 (343)
|.+.|++.+ .+|...|.+.+.+.+++.+..
T Consensus 361 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
T PRK11551 361 PLLAGQLLALGRSTVGVIGASIPVILVAALAA 392 (406)
T ss_pred hhhHhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence 999999887 456666666655555444433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.8e-10 Score=110.32 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=106.7
Q ss_pred hhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 044630 11 GIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTN 90 (343)
Q Consensus 11 g~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~ 90 (343)
++..+++.|+++++|++..+++.+.+...++..++.+++|+++|| +|||+.+.++..+..+........+
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~--------- 362 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIG--------- 362 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhcc---------
Confidence 356789999998999999999999999999999999999999999 5999998877622222111111101
Q ss_pred ccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044630 91 EERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVA 170 (343)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~ 170 (343)
....+.....+++.+..+. +..+..+++..|.++++ .|++.+++++...++|+.+||.+.|
T Consensus 363 ------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~lgp~l~g 423 (496)
T PRK03893 363 ------------GANVWVLGLLLFFQQMLGQ-GISGLLPKLIGGYFDTE------QRAAGLGFTYNVGALGGALAPILGA 423 (496)
T ss_pred ------------ccHHHHHHHHHHHHHHHhc-ccchhhHHHHHhhCCHH------HhhcccchhhhhhhHHHHHHHHHHH
Confidence 0122333333333333133 34566777888888653 3899999999999999999999999
Q ss_pred eeee-ccccccchhHHHHH
Q 044630 171 YVQT-VSWAWGFTIPTVCL 188 (343)
Q Consensus 171 ~l~~-~gw~~~F~i~~~~~ 188 (343)
++.+ .||+..+.+.+++.
T Consensus 424 ~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 424 LIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHhccCChHHHHHHHHHHH
Confidence 9999 88888776555443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.7e-10 Score=106.53 Aligned_cols=143 Identities=20% Similarity=0.223 Sum_probs=109.4
Q ss_pred hhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH-HHHHHHHhhcCCCCCCCC
Q 044630 10 FGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLG-MLMVTLTAIVPQLRPPHC 88 (343)
Q Consensus 10 yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g-~~~l~~~~~~~~~~~~~c 88 (343)
+++..+++.|+.+++|++..+++.+.....++..++.+++|+++|| +|||+.+.++..++ ...+.+... .
T Consensus 255 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~-~------- 325 (405)
T TIGR00891 255 HPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVFAI-G------- 325 (405)
T ss_pred hhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHHHh-C-------
Confidence 4556678899999999999999999999999999999999999999 59999988876322 221211111 1
Q ss_pred CCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 044630 89 TNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTI 168 (343)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~ 168 (343)
.+.+.+.+++++.++ ..++..+...+++.|.++++ .|++.+++.+...++|+.++|.+
T Consensus 326 ---------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~g~~~g~~~ 383 (405)
T TIGR00891 326 ---------------ANVAVLGLGLFFQQM-LVQGIWGILPKHLGEYFPTD------QRAAGLGFTYQLGNLGGALAPII 383 (405)
T ss_pred ---------------CchHHHHHHHHHHHH-HHccchhhHHHHHhhhCCcc------hhHHHhhHHHHHHHHHHHHHHHH
Confidence 123445555566666 66666777888999988754 38899999999999999999999
Q ss_pred hheeee-cc-ccccchh
Q 044630 169 VAYVQT-VS-WAWGFTI 183 (343)
Q Consensus 169 ~~~l~~-~g-w~~~F~i 183 (343)
.|++.+ .| |+.+|..
T Consensus 384 ~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 384 GALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHhccccchhHHh
Confidence 999999 66 8776654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.8e-10 Score=108.14 Aligned_cols=161 Identities=11% Similarity=0.016 Sum_probs=106.4
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHHH-HHHH---HHHHHHHHHHhhc
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIG-KFVTI-VLGF---LLGMLMVTLTAIV 80 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lG-r~~~i-~~~~---~~g~~~l~~~~~~ 80 (343)
.+.++++..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+.+ +|+.. .... .+....+.. .
T Consensus 256 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~---~ 332 (434)
T PRK11663 256 YVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL---M 332 (434)
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH---c
Confidence 34566777889999998999999999999999999999999999999999532 22222 2211 111111111 1
Q ss_pred CCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH
Q 044630 81 PQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL 160 (343)
Q Consensus 81 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i 160 (343)
+. .+........+.+|+ +..+.........+|.++++ .+++..++.+...++
T Consensus 333 ~~---------------------~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~ 384 (434)
T PRK11663 333 PF---------------------ASYVMQAACFFTIGF-FVFGPQMLIGMAAAECSHKE------AAGAATGFVGLFAYL 384 (434)
T ss_pred cc---------------------ccHHHHHHHHHHHHH-HHhhHHHHHHHHHHhcccHh------hHHhHHHHHHHHHHH
Confidence 21 012222222233333 22221112234456666532 489999999999999
Q ss_pred HHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHh
Q 044630 161 VLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 161 G~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
|..++|.+.+++.+ .||+..|.+.+++.+++.++.+.
T Consensus 385 g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 385 GAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999888877666555443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.1e-10 Score=106.62 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=112.6
Q ss_pred hhhhHHHHHHhhHhcCCChH---HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 044630 10 FGIMAIFTVYLLNEYNVSQA---YVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPP 86 (343)
Q Consensus 10 yg~~~~L~~yl~~~lg~s~~---~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~ 86 (343)
.++...++.|+.+..+.... ..+.+..+......++.+++|+++|| +|||+.+..+..+..+........+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~----- 309 (408)
T PRK09874 236 GSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSFVQ----- 309 (408)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHhc-----
Confidence 34456667777765443221 23444455666677888889999999 5999999887632222222221111
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 044630 87 HCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITS 166 (343)
Q Consensus 87 ~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~ 166 (343)
+.+.+++..++.|+ +.|...|...+...+..+++ .+++.+++++...++|..+||
T Consensus 310 ------------------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~~gp 364 (408)
T PRK09874 310 ------------------TPLQLGILRFLLGA-ADGALLPAVQTLLVYNSSNQ------IAGRIFSYNQSFRDIGNVTGP 364 (408)
T ss_pred ------------------cHHHHHHHHHHHHh-hhHhhHHHHHHHHHHhCCcc------cceeeehHHHHHHHHHHHhhH
Confidence 23556667778899 99988888888887765543 378888999899999999999
Q ss_pred hhhheeee-ccccccchhHHHHHHHHHHHHHhccc
Q 044630 167 TIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMR 200 (343)
Q Consensus 167 ~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~ 200 (343)
.+.|++.+ .||+..|.+.+++.+++.+..+...+
T Consensus 365 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 365 LMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 99999999998888777666554333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=104.08 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=109.3
Q ss_pred HhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCC
Q 044630 8 GSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPP 86 (343)
Q Consensus 8 ~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~ 86 (343)
.+.....+++.|+++ .|.+..+++...+.......++.++.|+++||+ |||+.+..+. ..+...+.+. +
T Consensus 215 ~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~---~----- 284 (381)
T PRK03633 215 VLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML---S----- 284 (381)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh---h-----
Confidence 344556678888875 699999999999988899999999999999995 9999887765 2221111111 1
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 044630 87 HCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITS 166 (343)
Q Consensus 87 ~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~ 166 (343)
.......+.+.++ +.+...|...+...|..+++ ++++..+.+..+.++|.++||
T Consensus 285 -------------------~~~~~~~~~l~g~-~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~igp 338 (381)
T PRK03633 285 -------------------QAAMAPALFILGA-AGFTLYPVAMAWACEKVEHH------ELVAMNQALLLSYTVGSLLGP 338 (381)
T ss_pred -------------------hHHHHHHHHHHHH-HHHhHHHHHHHHHHccCCHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 0122345556677 66667788888888877543 245566777778899999999
Q ss_pred hhhheeee-ccccccchhHHHHHHHHHH
Q 044630 167 TIVAYVQT-VSWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 167 ~~~~~l~~-~gw~~~F~i~~~~~~l~~~ 193 (343)
.+.|++.| .||+..|.+.+.+.+++.+
T Consensus 339 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 339 SFTAMLMQNYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 99999988 9999999987776655543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=108.31 Aligned_cols=184 Identities=11% Similarity=0.123 Sum_probs=120.5
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHH-HHHHHHHHHHhhcC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADA---YIGKFVTIVLGF-LLGMLMVTLTAIVP 81 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr---~lGr~~~i~~~~-~~g~~~l~~~~~~~ 81 (343)
.++|--..++++.|+ +++|++...++.+..+..+...+..++.|+++|| .+||||.++++. ....+.+.+..+.+
T Consensus 17 q~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~ 95 (477)
T TIGR01301 17 QFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAA 95 (477)
T ss_pred HHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCc
Confidence 455555566677765 5799999999999999999999999999999995 259999998764 22222222222212
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
+....- .+ ..-..........+.+++.+..+ +.....+...++++|..++++ ++++.++++.....++|
T Consensus 96 ~~~~~~-~~-----~~~~~~~~~~i~~~~i~~~lld~-~~n~~~~p~rALiaDl~p~~~----~~~~~a~~~~~~~~~lG 164 (477)
T TIGR01301 96 DIGHLF-GD-----NLDKKTKPRAIIVFVVGFWILDV-ANNMLQGPCRAFLADLTGGDA----RRTRIANAYFSFFMAIG 164 (477)
T ss_pred hhhhhc-cc-----cccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccCchh----HHHHHHHHHHHHHHHHH
Confidence 110000 00 00000000112344555556666 777777888899999998653 12467888999999999
Q ss_pred HHHHHhhhheee--e--------------ccccccchhHHHHHHHHHHHHHhccce
Q 044630 162 LLITSTIVAYVQ--T--------------VSWAWGFTIPTVCLFCGLVLLFAGMRI 201 (343)
Q Consensus 162 ~~ig~~~~~~l~--~--------------~gw~~~F~i~~~~~~l~~~~~~~~~~~ 201 (343)
+++|+.++++.. + .+.+..|.+.+++++++.++-++..|.
T Consensus 165 ~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E 220 (477)
T TIGR01301 165 NVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKE 220 (477)
T ss_pred HHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence 999998877541 1 267889999998888777666554443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=108.12 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=106.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcc
Q 044630 25 NVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRN 104 (343)
Q Consensus 25 g~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 104 (343)
+.+..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..+...+.+..++.. ...
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~~~-----------------~~~ 113 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPGSS-----------------PKS 113 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccCcc-----------------cch
Confidence 45666778889999999999999999999995 999999887622222222222222100 001
Q ss_pred hHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee-----------
Q 044630 105 QLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ----------- 173 (343)
Q Consensus 105 ~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~----------- 173 (343)
+...+++++++.|+ |.|+..+....+++|.+|++ .|++..++.+...++|.++++.+..++.
T Consensus 114 ~~~~~~~~r~l~G~-~~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 186 (502)
T TIGR00887 114 VMATLCFWRFWLGV-GIGGDYPLSAIITSEFATKK------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAA 186 (502)
T ss_pred HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 25678899999999 99999999999999999865 3888999999999999888887654321
Q ss_pred -----------e--ccccccchhHHHHHHHHHH
Q 044630 174 -----------T--VSWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 174 -----------~--~gw~~~F~i~~~~~~l~~~ 193 (343)
. .+||+.|.+.++..++.++
T Consensus 187 ~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 187 DEASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred ccccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 1 3799999887766554433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-10 Score=108.16 Aligned_cols=162 Identities=14% Similarity=0.191 Sum_probs=130.4
Q ss_pred HHhhhhhHHHH---HHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCC
Q 044630 7 LGSFGIMAIFT---VYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQ 82 (343)
Q Consensus 7 ~~~yg~~~~L~---~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~ 82 (343)
.+||-++-++. .++.++.++|.+|.+.+.+.+.+...++-.+.|.++||. +.|+.+.+++ +.|.+.+.+. +.+
T Consensus 39 a~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai~nil~G-fs~- 115 (448)
T COG2271 39 AAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAIVNILFG-FSP- 115 (448)
T ss_pred HHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHHHHHHHh-hhh-
Confidence 34555554444 677778899999999999999999999999999999995 9999999888 4444433332 212
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
+.+.+.+...+.|. ..|.-.|.....++..|+.++ |++..+++..+-|+|+
T Consensus 116 ----------------------s~~~~~~l~~lng~-fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGG 166 (448)
T COG2271 116 ----------------------SLFLFAVLWVLNGW-FQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGG 166 (448)
T ss_pred ----------------------HHHHHHHHHHHHHH-HhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhccc
Confidence 46677777888999 999999999999999998653 8999999999999999
Q ss_pred HHHHhhh--heeee-ccccccchhHHHH-HHHHHHHHHhccc
Q 044630 163 LITSTIV--AYVQT-VSWAWGFTIPTVC-LFCGLVLLFAGMR 200 (343)
Q Consensus 163 ~ig~~~~--~~l~~-~gw~~~F~i~~~~-~~l~~~~~~~~~~ 200 (343)
.+.+.++ +++.. .+|+.+|++++++ ++++++.+..++.
T Consensus 167 al~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 167 ALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred chHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999998 88887 8999999999975 4556666655543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=106.87 Aligned_cols=150 Identities=9% Similarity=0.084 Sum_probs=96.9
Q ss_pred HHHHHhhHhcCCChHHHHHH-HHHHHHHH-----HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 044630 15 IFTVYLLNEYNVSQAYVAAK-FGAWNGVA-----DFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHC 88 (343)
Q Consensus 15 ~L~~yl~~~lg~s~~~a~~~-~~~~~~~~-----~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c 88 (343)
.+...+.++++.++.+.+.. .+...... .++.++.|+++||+ ||||.+..+..+..+...+.++.++...
T Consensus 36 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~l~~~~~~~~~--- 111 (434)
T PRK15075 36 FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVTLSIMASGTLLIAFVPGYAT--- 111 (434)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHHHHHHHHHHHHHHhCCcHHH---
Confidence 44456777899887765433 33322222 35678899999995 9999999887222222222323231100
Q ss_pred CCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 044630 89 TNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTI 168 (343)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~ 168 (343)
........+++++++.|+ |.|...++..++++|.+|+++ |++..+++....++|..+++.+
T Consensus 112 ------------~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 112 ------------IGLAAPLLVLLGRLLQGF-SAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred ------------HHHHHHHHHHHHHHHhhc-cccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHH
Confidence 000001246788999999 999999999999999998653 7888888777777776666665
Q ss_pred hhee--------ee-ccccccchhHHHH
Q 044630 169 VAYV--------QT-VSWAWGFTIPTVC 187 (343)
Q Consensus 169 ~~~l--------~~-~gw~~~F~i~~~~ 187 (343)
++.+ .+ .|||..|.+.++.
T Consensus 173 g~~l~~~~~~~~~~~~gWr~~f~~~~~~ 200 (434)
T PRK15075 173 GYLLNQWLSPAQMAEWGWRIPFLIGCLI 200 (434)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHH
Confidence 5443 24 8999999875443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.6e-10 Score=114.92 Aligned_cols=131 Identities=11% Similarity=0.059 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHH
Q 044630 35 FGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMF 114 (343)
Q Consensus 35 ~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~ 114 (343)
..+..++..++.+++|+++|| +|||+++.++.++..+...+..+.+ +...+++.++
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~-----------------------s~~~ll~~~~ 656 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN-----------------------SESAMIALLC 656 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc-----------------------cHHHHHHHHH
Confidence 344556778889999999999 5999999887733332222222212 1233444455
Q ss_pred HHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeeeccccccchhHHHHHHHHHHH
Q 044630 115 WLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQTVSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 115 l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~~gw~~~F~i~~~~~~l~~~~ 194 (343)
+.++ +.++..+...++++|.+|++ .|++++++.+...++|+++||.+++++.+.+....|.+.+++++++.++
T Consensus 657 l~g~-~~~~~~~~~~a~~aEl~Pt~------~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll 729 (742)
T TIGR01299 657 LFGG-LSIAAWNALDVLTVELYPSD------KRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLL 729 (742)
T ss_pred HHHH-HHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 6666 66677788899999999864 4899999999999999999999998876644566777777776665554
Q ss_pred HH
Q 044630 195 LF 196 (343)
Q Consensus 195 ~~ 196 (343)
.+
T Consensus 730 ~~ 731 (742)
T TIGR01299 730 AL 731 (742)
T ss_pred HH
Confidence 43
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-10 Score=92.11 Aligned_cols=130 Identities=15% Similarity=0.250 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHH
Q 044630 36 GAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFW 115 (343)
Q Consensus 36 ~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l 115 (343)
..+..+..++.++.|+++||+ |||+.+..+..+..+........+ +.+.+.+...+
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~ 60 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS-----------------------NITVLIIARFL 60 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc-----------------------cHHHHHHHHHH
Confidence 345667778899999999995 999999887622222111221111 34566677788
Q ss_pred HHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHH
Q 044630 116 LAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 116 ~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~ 194 (343)
.++ +.+...+...++..|.++++ +|++..++.+...++|..+++.+.+++.+ .+|+..|.+.++..+++.+.
T Consensus 61 ~g~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 61 QGF-GAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL 133 (141)
T ss_pred HHH-HHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 888 88888899999999998764 37888999999999999999999999888 89999998877766665554
Q ss_pred HH
Q 044630 195 LF 196 (343)
Q Consensus 195 ~~ 196 (343)
..
T Consensus 134 ~~ 135 (141)
T TIGR00880 134 LA 135 (141)
T ss_pred Hh
Confidence 44
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-09 Score=104.99 Aligned_cols=131 Identities=13% Similarity=0.071 Sum_probs=95.7
Q ss_pred hhhHHHHHHhhH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhc-CCCCCCC
Q 044630 11 GIMAIFTVYLLN-EYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIV-PQLRPPH 87 (343)
Q Consensus 11 g~~~~L~~yl~~-~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~-~~~~~~~ 87 (343)
.+.+.+...+.+ ++|+|.++.+.+.+++.....++.++.|++.||+ |.|+++.++. +.+... ...++. ++.
T Consensus 51 ~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i~~-~~~~~a~~~~---- 124 (462)
T PRK15034 51 MLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILIIPC-VWLGIAVQNP---- 124 (462)
T ss_pred HHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHH-HHHHHHHccc----
Confidence 344445566655 7999999999999999999999999999999995 9999988887 222221 122211 100
Q ss_pred CCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 044630 88 CTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITST 167 (343)
Q Consensus 88 c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~ 167 (343)
..+.+.+++.+++.|+ + |+..+.....+++.|+++ +|+++.+++....|+|..+++.
T Consensus 125 ---------------~~s~~~lli~r~l~Gi-g-g~~f~~~~~~vs~wfp~~------~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 125 ---------------NTPFGIFIVIALLCGF-A-GANFASSMGNISFFFPKA------KQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred ---------------CCCHHHHHHHHHHHHH-H-HHhHHHHHHHHHHHCCHh------HhHHHHHHHHHHHhhHHHHHHH
Confidence 0246788889999999 8 667888899999999754 3888889887677777766555
Q ss_pred hhh
Q 044630 168 IVA 170 (343)
Q Consensus 168 ~~~ 170 (343)
+.+
T Consensus 182 l~p 184 (462)
T PRK15034 182 VAP 184 (462)
T ss_pred HHH
Confidence 443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=104.64 Aligned_cols=148 Identities=13% Similarity=0.035 Sum_probs=105.3
Q ss_pred hhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 044630 12 IMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNE 91 (343)
Q Consensus 12 ~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~ 91 (343)
..++++.|++ ++|++.++.+.+.+.+.....+++++.|.++||+ ||++.......++..+..+.....
T Consensus 23 ~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~~~~~~---------- 90 (382)
T TIGR00902 23 FLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAAAFSAG---------- 90 (382)
T ss_pred HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 3456667775 5899999999999999999999999999999995 985433222211111111110000
Q ss_pred cccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhe
Q 044630 92 ERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAY 171 (343)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~ 171 (343)
..+.+.+++.+.+.+. +.+...|...++..+ ++ +++++.++......++|.++++.++++
T Consensus 91 -----------~~~~~~l~~~~~l~~~-~~~~~~p~~~al~~~-~~-------~~~~~~~g~~~~~~slG~~~g~~l~g~ 150 (382)
T TIGR00902 91 -----------AHNAWLLFIAIGLFAL-FFSAGMPIGDALANT-WQ-------KQFGLDYGKVRLIGSAAFIIGSALFGG 150 (382)
T ss_pred -----------hhhHHHHHHHHHHHHH-HHccchhHHHHHHHH-HH-------HHcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 0246677777877888 777778887777543 22 126777888899999999999999999
Q ss_pred eee-ccccccchhHHHHHHHH
Q 044630 172 VQT-VSWAWGFTIPTVCLFCG 191 (343)
Q Consensus 172 l~~-~gw~~~F~i~~~~~~l~ 191 (343)
+.+ .||+..|.+.++..++.
T Consensus 151 l~~~~g~~~~f~~~~~~~~~~ 171 (382)
T TIGR00902 151 LIGMFDEQNILAILTAGLAFM 171 (382)
T ss_pred HHHHcChhHHHHHHHHHHHHH
Confidence 989 99999998776554333
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=104.39 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=114.4
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYI-GKFVTIVLGFLLGMLMVTLTAIVPQLRP 85 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~l-Gr~~~i~~~~~~g~~~l~~~~~~~~~~~ 85 (343)
+.-||+..+.|+|+.+..|+|..+|+..++.|-.+...+++++||+|||++ |||..+.+...++.....+ .. . +.|
T Consensus 266 ivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~-~~-w-~~~ 342 (448)
T COG2271 266 VVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLV-LY-W-LAP 342 (448)
T ss_pred HHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH-HH-H-cCC
Confidence 445899999999999999999999999999999999999999999999998 8887776665333322111 11 1 111
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH-HHHH
Q 044630 86 PHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL-VLLI 164 (343)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i-G~~i 164 (343)
..+..+..+.++++|+ -.-+-.-.+-....|..| ++ ..+++-+..-++..+ |+..
T Consensus 343 -----------------~~~~~l~~~~l~~iGf-~IyGPqmLiGl~a~e~~p----K~--AaGtA~Gf~Glf~Yl~Ga~~ 398 (448)
T COG2271 343 -----------------NGSYLLDAILLFIIGF-LIYGPQMLIGLAAAEFVP----KK--AAGTATGFVGLFAYLIGAAL 398 (448)
T ss_pred -----------------CccHHHHHHHHHHHHH-HHhhHHHHHHHHHhcccc----Hh--hccchhchhhhHHHHhhHHh
Confidence 1244555566666665 333322122222234333 22 256666666667777 9999
Q ss_pred HHhhhheeee-ccccccchhHHHHHHHHHHHHHhc
Q 044630 165 TSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAG 198 (343)
Q Consensus 165 g~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~ 198 (343)
+....+++.| +||..+|.+..+..+++.+.++..
T Consensus 399 a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 399 AGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred cCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999 899999988777766666555543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=108.03 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=105.5
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHHHH-HH---HHHHHHHHHHhhc
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYI-GKFVTIVL-GF---LLGMLMVTLTAIV 80 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~l-Gr~~~i~~-~~---~~g~~~l~~~~~~ 80 (343)
...+|++..++|.|++++.|++..+++.....+.....++.+++|+++||+- |||+...+ .. .++.+++. ..
T Consensus 266 ~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~---~~ 342 (452)
T PRK11273 266 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW---LN 342 (452)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHH---Hh
Confidence 3456788899999999999999999998888888888899999999999941 44443222 11 12221111 10
Q ss_pred CCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH
Q 044630 81 PQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL 160 (343)
Q Consensus 81 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i 160 (343)
+. .+.......+.+++. +..+......++..|.+|++ .+++++++++...++
T Consensus 343 ~~---------------------~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~ 394 (452)
T PRK11273 343 PA---------------------GNPTVDMACMIVIGF-LIYGPVMLIGLHALELAPKK------AAGTAAGFTGLFGYL 394 (452)
T ss_pred cc---------------------cChHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcChh------hhhhHHHHHHHHHHH
Confidence 10 112233333444444 32222222334566777654 388899999888888
Q ss_pred HHHH-HHhhhheeee-ccccccchhHHHHHHHHHHHHH
Q 044630 161 VLLI-TSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 161 G~~i-g~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
|+.+ +|.+.+++.| .||+..|.+.++..+++++...
T Consensus 395 g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 395 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 8654 7999999999 8999999988877666654443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=105.25 Aligned_cols=157 Identities=13% Similarity=0.192 Sum_probs=115.1
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPP 86 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~ 86 (343)
+++.++..+++.|+.+ .|++. ++.....+.....++.++.|++.|| +||||.+..+..+..+...+....+
T Consensus 230 ~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~----- 300 (392)
T PRK12382 230 VGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP----- 300 (392)
T ss_pred HHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc-----
Confidence 4556666777788765 46653 4555666777778889999999999 5999998877622111111221111
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 044630 87 HCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITS 166 (343)
Q Consensus 87 ~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~ 166 (343)
+.+.+++...+.++ +.+...+...+...|.++++ +|++.+++++...++|..+++
T Consensus 301 ------------------~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~ig~ 355 (392)
T PRK12382 301 ------------------TAWVALAGAALTGA-GCSLIFPALGVEVVKRVPSQ------VRGTALGGYAAFQDIAYGVSG 355 (392)
T ss_pred ------------------cHHHHHHHHHHHHH-HHHhHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 23455566777888 88887888778888877643 389999999999999999999
Q ss_pred hhhheeee-ccccccchhHHHHHHHHHHHHHh
Q 044630 167 TIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 167 ~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
.+.+++.+ .||+..|.+.+++.++++++.+.
T Consensus 356 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 356 PLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 99999999 99999999988887777766554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.8e-09 Score=99.25 Aligned_cols=157 Identities=15% Similarity=0.207 Sum_probs=101.5
Q ss_pred HHHHHhhHhcC--CChHHHHHHHHH--HHH---HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 044630 15 IFTVYLLNEYN--VSQAYVAAKFGA--WNG---VADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPH 87 (343)
Q Consensus 15 ~L~~yl~~~lg--~s~~~a~~~~~~--~~~---~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~ 87 (343)
.+..++.++.. .++++.+...+. +.. ...++.++.|+++||+ ||||++.++.++..+...+..+.++...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-- 90 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT-- 90 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh--
Confidence 35555555543 444544444332 222 2235789999999995 9999999887222222222222232100
Q ss_pred CCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 044630 88 CTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITST 167 (343)
Q Consensus 88 c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~ 167 (343)
........+++++++.|+ |.|...+...++++|.+++++ |+...++...+..+|.++++.
T Consensus 91 -------------~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~ 150 (394)
T TIGR00883 91 -------------IGIWAPILLLLARLIQGF-SLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAAL 150 (394)
T ss_pred -------------hHHHHHHHHHHHHHHHHh-hccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHH
Confidence 000012357788899999 999999999999999987542 778888888888899988887
Q ss_pred hhheee--------e-ccccccchhHHHHHHHHHHH
Q 044630 168 IVAYVQ--------T-VSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 168 ~~~~l~--------~-~gw~~~F~i~~~~~~l~~~~ 194 (343)
+...+. + .+|+..|.+.++..+++.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 151 TVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred HHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 655432 3 68999998877766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.8e-10 Score=105.27 Aligned_cols=155 Identities=13% Similarity=0.030 Sum_probs=112.7
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHH-HHHHhhcC
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLM-VTLTAIVP 81 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~-l~~~~~~~ 81 (343)
+..+.++++..+++.|+++++|++..+++.......+...++.+++|+++||+ |||+.+..+. ...... ..+.....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (394)
T TIGR00883 230 ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALLAVPLLMALLD 308 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567778888999999999999999999999999999999999999999995 9999877554 111111 11111101
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHH-HHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYY-TTFTL 160 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y-~~~~i 160 (343)
..+.+.++....+.++ +.+...+...++..|.+|+++ |+++++..+ .+..+
T Consensus 309 ---------------------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~ 360 (394)
T TIGR00883 309 ---------------------SGSFTLFFFLVLGLAL-IGGMYTGPMGSFLPELFPTEV------RYTGASLAYNLAGAI 360 (394)
T ss_pred ---------------------CCchHHHHHHHHHHHH-HHHHHhhhHHHHHHHhCCccc------eeeEeeehhHhHHHH
Confidence 0123455556667777 788888889999999998643 666777644 55668
Q ss_pred HHHHHHhhhheeee-cc-ccccchhHHHH
Q 044630 161 VLLITSTIVAYVQT-VS-WAWGFTIPTVC 187 (343)
Q Consensus 161 G~~ig~~~~~~l~~-~g-w~~~F~i~~~~ 187 (343)
|+.++|.+.+++.+ .| |+..+...+++
T Consensus 361 g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 361 FGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred HhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 89899999999988 66 77666554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=106.54 Aligned_cols=157 Identities=11% Similarity=0.042 Sum_probs=116.1
Q ss_pred hhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 044630 9 SFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHC 88 (343)
Q Consensus 9 ~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c 88 (343)
++++..+++.|+.+.+|++...++.+.+.+..+..++.+++|+++||. ++++.+..+..+..+.+.+....+
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~------- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP------- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence 346667788899888999999999999999999999999999999994 777777766522111111221111
Q ss_pred CCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 044630 89 TNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTI 168 (343)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~ 168 (343)
+.....++.++.|+ +.+...+...+++.|..|++ .|++.+++++...++|..+|+.+
T Consensus 311 ----------------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~l 367 (417)
T PRK10489 311 ----------------MWILAVLCLALFGY-LSAISSLLQYTLLQTQTPDE------MLGRINGLWTAQNVTGDAIGAAL 367 (417)
T ss_pred ----------------hHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHH------HHHHHHHHHHHHHhhhHhHHHHH
Confidence 23445566677788 77777677778888887643 48999999999999999999999
Q ss_pred hheeee-ccccccchhHHHHHHHHHHHHH
Q 044630 169 VAYVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 169 ~~~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
.|++.+ .|++..|.+.+++.++..++..
T Consensus 368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 396 (417)
T PRK10489 368 LGGLGAMMTPVASASASGFGLLIIGVLLL 396 (417)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 999999 8888888776665544434443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-09 Score=105.16 Aligned_cols=158 Identities=14% Similarity=0.163 Sum_probs=119.2
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHH---HHHHHHHHHHhhcC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAY-IGKFVTIVLGF---LLGMLMVTLTAIVP 81 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~-lGr~~~i~~~~---~~g~~~l~~~~~~~ 81 (343)
.+++++...+++.|+++ +|++..+++.+.+...+...++.+++|+++||. +++++...++. ..+...+.. ...
T Consensus 254 ~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~- 330 (455)
T TIGR00892 254 FLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLC-ALA- 330 (455)
T ss_pred HHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHH-HHh-
Confidence 35566777788899865 799999999999999999999999999999984 23444333332 222222111 111
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
.+.+.+++.+++.|+ +.|...++..+.+.|.++++ ++++.+++++...++|
T Consensus 331 ----------------------~~~~~~~i~~~~~G~-~~g~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~lg 381 (455)
T TIGR00892 331 ----------------------GDYTGLVIYCIFFGL-SFGSVGALLFEVLMDLVGAQ------RFSSAVGLVTIVECCA 381 (455)
T ss_pred ----------------------chHHHHHHHHHHHHH-HhchHHHHHHHHHHHHhhHH------HHhhHHhHHHHHHHHH
Confidence 134566677888899 99999999999999988753 3788999999999999
Q ss_pred HHHHHhhhheeee-c-cccccchhHHHHHHHHHHHH
Q 044630 162 LLITSTIVAYVQT-V-SWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 162 ~~ig~~~~~~l~~-~-gw~~~F~i~~~~~~l~~~~~ 195 (343)
.++||.+.|++.+ . +|+..|.+.+++.+++.+..
T Consensus 382 ~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 382 VLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 9999999999988 5 69999999888777665543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.8e-09 Score=102.52 Aligned_cols=163 Identities=16% Similarity=0.166 Sum_probs=114.0
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH-HH-HHHHHHHHHHhhcC
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVL-GF-LLGMLMVTLTAIVP 81 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~-~~-~~g~~~l~~~~~~~ 81 (343)
+...++++...++|.|++ ++|++..+++.+.+....+..++.++.|+++|| +|||+.+.. +. ..+.....+... +
T Consensus 233 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~~~~l~~~-~ 309 (402)
T TIGR00897 233 INTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIFTLALYYI-P 309 (402)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHH-H
Confidence 345678888899999985 589999999998888999999999999999999 499887643 22 111111111111 1
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
... ..+.+..++...+.|+ +.++..+ ..+...|. +++ +|++++++++...++|
T Consensus 310 ~~~------------------~~~~~~~~~~~~~~G~-~~~~~~~-~~~~~~~~-~~~------~~g~~~g~~~~~~~lg 362 (402)
T TIGR00897 310 QHF------------------GHSFAVALIIAIALGI-FLAGYVP-LAAVFPTL-APK------HKGAAMSVLNLSAGLS 362 (402)
T ss_pred Hcc------------------CCcHHHHHHHHHHHHH-HHHHHHH-HHHHHHhh-Ccc------hhHHHHHHHHHHHHHH
Confidence 100 0123444555666777 6666544 34445443 322 3899999999999999
Q ss_pred HHHHHhhhheeee-ccccccchhHHHHHHHHHHHHH
Q 044630 162 LLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 162 ~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
..++|.+.+++.+ .||...|.+.+++.+++.++..
T Consensus 363 ~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 363 AFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 8999999988877766655443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-09 Score=103.63 Aligned_cols=145 Identities=14% Similarity=0.075 Sum_probs=100.3
Q ss_pred hhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-H-HHHhhcCC
Q 044630 5 ERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLM-V-TLTAIVPQ 82 (343)
Q Consensus 5 e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~-l-~~~~~~~~ 82 (343)
...+++++..+++.|+++.+|++..+++.....+.+...++.+++|+++||+ |||+.+.++..++.+. . .+....+.
T Consensus 250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~ 328 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALSWLVAA 328 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556788889999999999999999988888888888889999999999995 9999887765222111 1 11111010
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHH-HH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFT-LV 161 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~-iG 161 (343)
..........++.++ +.|...+...++..|.+|++. |++++++.+...+ ++
T Consensus 329 ---------------------~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~ 380 (434)
T PRK15075 329 ---------------------PSFARMLAVELWLSF-LYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIF 380 (434)
T ss_pred ---------------------CchHHHHHHHHHHHH-HHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHH
Confidence 012223333445556 666666667788899987642 7888888665444 45
Q ss_pred HHHHHhhhheeee-cccc
Q 044630 162 LLITSTIVAYVQT-VSWA 178 (343)
Q Consensus 162 ~~ig~~~~~~l~~-~gw~ 178 (343)
+.++|.+.+++.+ .|++
T Consensus 381 g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 381 GGFTPAISTWLIHVTGDK 398 (434)
T ss_pred hhhHHHHHHHHHHhcCCc
Confidence 7789999999988 6653
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.9e-09 Score=103.25 Aligned_cols=158 Identities=12% Similarity=0.120 Sum_probs=111.5
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chHHHHH-HHH-HHHHHHHHHHhh
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYI-----GKFVTIV-LGF-LLGMLMVTLTAI 79 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~l-----Gr~~~i~-~~~-~~g~~~l~~~~~ 79 (343)
..++-....++.|+++ .|.+..+.+... . ....+++.+++|.++|| + ||||..+ ++. ..+..... .++
T Consensus 26 l~~~~~~~~l~~~l~~-~g~~~~~ig~~~-~-~~~~~~~~~l~gpl~Dr-~~~~~~Grrr~~ll~~~i~~~~~~~~-~a~ 100 (491)
T PRK11010 26 LPLALTSGTLQAWMTV-ENIDLKTIGFFS-L-VGQAYVFKFLWSPLMDR-YTPPFLGRRRGWLLATQLLLLVAIAA-MGF 100 (491)
T ss_pred HHHHHHHHHHHHHHHh-CCCCHHHHHHHH-H-HHHHHHHHHHHHHHHHc-ccccCCCCchHHHHHHHHHHHHHHHH-HHH
Confidence 3445555667777665 489988888762 2 22335789999999999 5 9998754 443 22222112 222
Q ss_pred cCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHH
Q 044630 80 VPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFT 159 (343)
Q Consensus 80 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~ 159 (343)
.+. ..+.+.+...+.+.++ +.+...+...++..|.++++ +|+++.++...+.+
T Consensus 101 ~~~--------------------~~~l~~l~~~~~l~~~-~~a~~~i~~~a~~~~~~~~~------~rg~~~~i~~~g~~ 153 (491)
T PRK11010 101 LEP--------------------GTQLRWLAALAVVIAF-CSASQDIVFDAWKTDVLPAE------ERGAGAAISVLGYR 153 (491)
T ss_pred cCC--------------------cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChh------hhHHHHHHHHHHHH
Confidence 110 1245667777778888 88888999999999998754 27888888889999
Q ss_pred HHHHHHHhhhheeee--ccccccchhHHHHHHHHHHHHH
Q 044630 160 LVLLITSTIVAYVQT--VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 160 iG~~ig~~~~~~l~~--~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
+|.++++.+.+++.+ .|||..|.+.++..++..+..+
T Consensus 154 lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 154 LAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888877 5999999998877666554433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=107.32 Aligned_cols=147 Identities=18% Similarity=0.197 Sum_probs=118.7
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCCC
Q 044630 22 NEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGP 101 (343)
Q Consensus 22 ~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~ 101 (343)
.+++++..+-+.+.+.+..+..++.+++|+++||+ |-|+++.++.++..++-.+. |...
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~---P~aa----------------- 124 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLT---PLAA----------------- 124 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHH---HHHH-----------------
Confidence 36889999999999999999999999999999996 99999998873333322222 2100
Q ss_pred CcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee--ccccc
Q 044630 102 NRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT--VSWAW 179 (343)
Q Consensus 102 ~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~--~gw~~ 179 (343)
....+.+++.|++.|+ +.|...|++..+.+...|+++ |+++.+..+.+..+|.+++..+.|++.+ .||+.
T Consensus 125 -~~~~~~~~~~R~lqGl-~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s 196 (466)
T KOG2532|consen 125 -SIGFYLLLVLRFLQGL-GQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS 196 (466)
T ss_pred -HhcchhhHHHHHHhHH-HHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence 1123467889999999 999999999999999998643 8999999999999999999999999887 89999
Q ss_pred cchhHHHHHHHHHHHHHh
Q 044630 180 GFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 180 ~F~i~~~~~~l~~~~~~~ 197 (343)
.|++.++..++-.+++..
T Consensus 197 ifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 197 IFYVFGIVGLIWFILWFL 214 (466)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988876655555443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.6e-09 Score=102.34 Aligned_cols=164 Identities=10% Similarity=0.008 Sum_probs=103.0
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHHhhcCCCC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLL-GMLMVTLTAIVPQLR 84 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~-g~~~l~~~~~~~~~~ 84 (343)
.+.+|++..+++.|+.+++|++..+++...++......++.+++|+++|| +|||+.+.++..+ +.....+....+.
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~-- 332 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSALQN-- 332 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 46788999999999999999999898888888777778888899999999 5999988776522 1111111100010
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH-HHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL-VLL 163 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i-G~~ 163 (343)
..+.......+.+... +.+...+...++.+|.+|++. |++++++.|...++ ++.
T Consensus 333 ------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g~ 387 (432)
T PRK10406 333 ------------------VSSPYAAFGLVMCALL-IVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFGG 387 (432)
T ss_pred ------------------CCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHHh
Confidence 0011111111111112 233333456678899998653 89999998866554 344
Q ss_pred HHHhhhheeee-ccccccchhHHHHHHHHHHHHHh
Q 044630 164 ITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 164 ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
.+|.+.+++.. .+|...+.+.++..+++++..+.
T Consensus 388 ~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 388 SAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 47777776654 44666666665555555544443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-09 Score=103.72 Aligned_cols=154 Identities=8% Similarity=0.049 Sum_probs=108.9
Q ss_pred hhhHHHHHHhhHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCC
Q 044630 11 GIMAIFTVYLLNEY---NVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPP 86 (343)
Q Consensus 11 g~~~~L~~yl~~~l---g~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~ 86 (343)
.....++.|+.+.+ +.+..+.+.+.++......++.+++|+++|| +|||+.+.++. +.+... .+..+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~-~l~~~~~----- 313 (420)
T PRK09528 241 VFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRI-IGSGFAT----- 313 (420)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHH-HHHHhcc-----
Confidence 34445777777643 5666778888888888888999999999999 59999988776 222221 1222211
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHH-HHHHHHHHHHHH
Q 044630 87 HCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNW-YYTTFTLVLLIT 165 (343)
Q Consensus 87 ~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~-~y~~~~iG~~ig 165 (343)
+.+.++....+.++ +.+...+....++.|.++++. +++.++. +....++|.+++
T Consensus 314 ------------------~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig 368 (420)
T PRK09528 314 ------------------GPLEVSILKLLHAF-EVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFL 368 (420)
T ss_pred ------------------cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHH
Confidence 23455666667777 777777777788888886542 4555444 456788999999
Q ss_pred Hhhhheeee-ccccccchhHHHHHHHHHHHHH
Q 044630 166 STIVAYVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 166 ~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
+.+.|++.| .||+..|.+.+++.++..++.+
T Consensus 369 ~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 369 STLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999987776655554443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-09 Score=102.85 Aligned_cols=160 Identities=10% Similarity=0.017 Sum_probs=112.7
Q ss_pred hhhHHHHHHhhHhcCCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCC
Q 044630 11 GIMAIFTVYLLNEYNVS--------QAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQ 82 (343)
Q Consensus 11 g~~~~L~~yl~~~lg~s--------~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~ 82 (343)
....+++.|+++ .|.+ ....+...++..+...++.++.|+++||+ |||+++.++.++..+.+.+......
T Consensus 226 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~~~v~~~l~~~~~~ 303 (418)
T TIGR00889 226 ITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVAWALRFGFFAYGDP 303 (418)
T ss_pred HHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCc
Confidence 344555667654 4544 35668888888888888999999999995 9999999887222221111111010
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHH-HHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYY-TTFTLV 161 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y-~~~~iG 161 (343)
+....+.+++...+.++ +.+...+....+++|.++++ .|++.+++++ ....+|
T Consensus 304 -------------------~~~~~~~l~l~~~l~g~-~~~~~~~~~~~~i~~~~p~~------~~g~~~g~~~~~~~~lg 357 (418)
T TIGR00889 304 -------------------EYFGYALLFLSMIVYGC-AFDFFNISGSVFVEKEVPVH------IRASAQGLFTLMCNGFG 357 (418)
T ss_pred -------------------chhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhhH
Confidence 00123456667778888 88888888889999998754 3899999997 567899
Q ss_pred HHHHHhhhheeee-c------cccccchhHHHHHHHHHHHHHhc
Q 044630 162 LLITSTIVAYVQT-V------SWAWGFTIPTVCLFCGLVLLFAG 198 (343)
Q Consensus 162 ~~ig~~~~~~l~~-~------gw~~~F~i~~~~~~l~~~~~~~~ 198 (343)
+++||.+.|++.+ . ||+..|.+.+++.+++.++++..
T Consensus 358 ~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~ 401 (418)
T TIGR00889 358 SLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIF 401 (418)
T ss_pred HHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999877 3 59999988887766665555443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.8e-09 Score=101.27 Aligned_cols=153 Identities=8% Similarity=-0.051 Sum_probs=100.1
Q ss_pred hhhHHhhhhhHHHHHHhhH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH-HHHHHHHHHHHHHHhhcC
Q 044630 4 FERLGSFGIMAIFTVYLLN-EYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTI-VLGFLLGMLMVTLTAIVP 81 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~-~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i-~~~~~~g~~~l~~~~~~~ 81 (343)
+...+++++.+++|.|+++ ..|++..+++........+..++.+++|+++||+ |||+.. ....++..+.+.+....+
T Consensus 253 ~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~~~~~~~~~~~ 331 (412)
T TIGR02332 253 CLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAAAGWLLASATD 331 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456788999999999987 3578888999888999999999999999999994 877643 333212111111111101
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
+....+.+..+.++ |.....+.......|.+++ ++|+.++++.+...++|
T Consensus 332 -----------------------~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~------~~~~~a~g~~~~~~~~g 381 (412)
T TIGR02332 332 -----------------------HNLIQLLGIIMASM-GSFSAMAIFWTTPDQSISL------QARAIAIAVINATGNIG 381 (412)
T ss_pred -----------------------CHHHHHHHHHHHHH-HhhhhhhHHHhhcccccch------HHHHHHHHHHHHhhhhh
Confidence 11112222223333 3322222222333344443 24899999999999999
Q ss_pred HHHHHhhhheeee-c-cccccchhHHHH
Q 044630 162 LLITSTIVAYVQT-V-SWAWGFTIPTVC 187 (343)
Q Consensus 162 ~~ig~~~~~~l~~-~-gw~~~F~i~~~~ 187 (343)
++++|.+.+.+.+ . +|+.+|.+.++.
T Consensus 382 ~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 382 SALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhhhcccccccCCCCchhHHHHHHH
Confidence 9999999999988 4 699998876654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=99.45 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=103.4
Q ss_pred HHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCcccc
Q 044630 18 VYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERI 94 (343)
Q Consensus 18 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~~~ 94 (343)
.+..+++|++..+++.......+...++.+++|+++|| +|||+.+.++. .++.+++.+... +...+
T Consensus 308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------- 376 (481)
T TIGR00879 308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGA-SFVTG--------- 376 (481)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhh-cccCC---------
Confidence 34445689999888888888888999999999999999 59999988876 222222221111 10000
Q ss_pred ccccCCCCcchHHHHH-HHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 95 HGQCIGPNRNQLAFLH-VAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 95 ~~~~~~~~~~~~~~l~-~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
.........+. ..++..+. +. +..+...++..|.++++ .|+...++.+...++|+++++.+.+++.
T Consensus 377 -----~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~p~~------~~~~~~~~~~~~~~lg~~i~~~~~~~~~ 443 (481)
T TIGR00879 377 -----SSKSSGNVAIVFILLFIAFF-AM-GWGPVPWVIVSEIFPLS------LRPKGISIAVAANWLANFIVGFLFPTML 443 (481)
T ss_pred -----cccchhHHHHHHHHHHHHHH-Hc-cccCeehhhhhccCChH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000112222 22222223 33 33466777778988754 3788999999999999999999999988
Q ss_pred e-ccccccchhHHHHHHHHHHHHH
Q 044630 174 T-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 174 ~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
+ .+|+..|.+.+++.+++.++.+
T Consensus 444 ~~~~~~~~f~~~~~~~~~~~i~~~ 467 (481)
T TIGR00879 444 ESIGVGGVFIFFGGLNVLGLIFVY 467 (481)
T ss_pred HhcCccceehhHHHHHHHHHHHHh
Confidence 8 8999999988877666655544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.4e-09 Score=104.95 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=114.1
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCCC
Q 044630 22 NEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGP 101 (343)
Q Consensus 22 ~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~ 101 (343)
+..+.+.....+..+++.++..++++++|.+||| +|||++++++.++..+.-..+++.+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~-------------------- 169 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP-------------------- 169 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence 4567788888899999999999999999999999 6999999999844444334444433
Q ss_pred CcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeeeccccccc
Q 044630 102 NRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQTVSWAWGF 181 (343)
Q Consensus 102 ~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~~gw~~~F 181 (343)
+.+.+.+.+++.|+ +.++...+...+++|.+++++ |+.+.++ +.....|+.+++..++++.. +||+.+
T Consensus 170 ---~~~~~~~~Rfl~G~-~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~ 237 (521)
T KOG0255|consen 170 ---NYWMFLIFRFLSGF-FGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLF 237 (521)
T ss_pred ---cHHHHHHHHHHHHh-hccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHH
Confidence 57889999999999 999999999999999998653 7777777 77777788888888888766 899999
Q ss_pred hhHHHHHHHHHHH
Q 044630 182 TIPTVCLFCGLVL 194 (343)
Q Consensus 182 ~i~~~~~~l~~~~ 194 (343)
++..+..++.++.
T Consensus 238 ~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 238 WIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHH
Confidence 9888776655544
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.1e-09 Score=102.19 Aligned_cols=162 Identities=13% Similarity=0.073 Sum_probs=116.3
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHHHHHHHHHHH-HHHHHHH
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIG-----KFVTIVLGFLLG-MLMVTLT 77 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lG-----r~~~i~~~~~~g-~~~l~~~ 77 (343)
.+.+. +-+...+..++.+++|++.++.+...+.......+-++ +|.++||+ + ||+.++++.+++ .+.+ .
T Consensus 37 ~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~~~~~~--~ 111 (468)
T TIGR00788 37 VKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLGSAILY--G 111 (468)
T ss_pred HhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHHHHHHH--H
Confidence 34444 45556677888889999999998888877777777655 99999996 7 777777766443 2222 2
Q ss_pred hhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHH
Q 044630 78 AIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTT 157 (343)
Q Consensus 78 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~ 157 (343)
..... ..........+++.++ +.+.......++..|+.+ ++++ ..+...++.|.+
T Consensus 112 ~l~~~--------------------~~~~~~~~~~~~l~~~-~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~ 166 (468)
T TIGR00788 112 LLPGK--------------------VSSAKVAAAFIFLAAL-AKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGA 166 (468)
T ss_pred hcccc--------------------cchHHHHHHHHHHHHH-HHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHH
Confidence 11110 0122333346678888 889999999999999988 3322 345566788888
Q ss_pred HHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHH
Q 044630 158 FTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 158 ~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~ 195 (343)
.++|.++|+.++|++.+ .+|+..|.+.+++.++..+..
T Consensus 167 ~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~ 205 (468)
T TIGR00788 167 SATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVS 205 (468)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999988 899999999888776664433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=102.18 Aligned_cols=165 Identities=13% Similarity=0.094 Sum_probs=111.3
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHH-HHHHHHHHHHHHHHHHHHhccchHHHHHHHH-H--HHHHHHHHHhhcC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFG-AWNGVADFLTVIFAFLADAYIGKFVTIVLGF-L--LGMLMVTLTAIVP 81 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~-~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~--~g~~~l~~~~~~~ 81 (343)
.++.++...+.+.|+.+++|++..+.+.+.. ...+...++.+++|+++||+ ||||.+.++. . ++.+.....+..+
T Consensus 235 ~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l~~~~ 313 (491)
T PRK11010 235 KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLLSITD 313 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445556677888988889999999999875 44568889999999999995 9998877655 2 2211111111100
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
.+...+....++..+ ..|...+...++..+..+++. .++.+++.+...++|
T Consensus 314 ----------------------~~~~~l~~~~~l~~~-~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~~lg 364 (491)
T PRK11010 314 ----------------------KNLYSMGAAVFFENL-CGGMGTAAFVALLMTLCNKSF------SATQFALLSALSAVG 364 (491)
T ss_pred ----------------------ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHHHH
Confidence 122333333444333 333333445666677766542 466778888888999
Q ss_pred HHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccc
Q 044630 162 LLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMR 200 (343)
Q Consensus 162 ~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~ 200 (343)
..+++.+.|++.| .||+..|.+.+++.+++++.....++
T Consensus 365 ~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 365 RVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888889999999 99999999888888877766655443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.5e-09 Score=97.91 Aligned_cols=129 Identities=18% Similarity=0.163 Sum_probs=102.5
Q ss_pred hHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCC
Q 044630 13 MAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCT 89 (343)
Q Consensus 13 ~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~ 89 (343)
...|...+.+.++++..+++++..++..+..+.+++.|++.+|+ |+|+.+++|+ ++|..++.-.+
T Consensus 32 ~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa----------- 99 (422)
T COG0738 32 NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAA----------- 99 (422)
T ss_pred chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhh-----------
Confidence 34566778889999999999999999999999999999999995 9999999998 45554433221
Q ss_pred CccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044630 90 NEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIV 169 (343)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~ 169 (343)
+......+..++++++. |.|..+...+++++...++++ ...-.|.....+.+|++++|.++
T Consensus 100 ------------~~~~y~~FL~~lFila~-Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g 160 (422)
T COG0738 100 ------------SSKSYGFFLVALFILAS-GIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLG 160 (422)
T ss_pred ------------hhhhHHHHHHHHHHHHh-hhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHH
Confidence 12357788899999999 999999999999999987643 12224555566788888998887
Q ss_pred hee
Q 044630 170 AYV 172 (343)
Q Consensus 170 ~~l 172 (343)
+++
T Consensus 161 ~~l 163 (422)
T COG0738 161 SSL 163 (422)
T ss_pred HHH
Confidence 764
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.8e-09 Score=104.70 Aligned_cols=149 Identities=15% Similarity=0.144 Sum_probs=116.8
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCccccccccC
Q 044630 23 EYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCI 99 (343)
Q Consensus 23 ~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~ 99 (343)
++.-|....+++..+.+.-..++.+++|.++||+ .|||.++.+- .+..+.+.+.....
T Consensus 39 ~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L~~l~~~~------------------ 99 (524)
T PF05977_consen 39 QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLLAVLAFFG------------------ 99 (524)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHhC------------------
Confidence 4677888888888889999999999999999995 9999998876 22222222222211
Q ss_pred CCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-cccc
Q 044630 100 GPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VSWA 178 (343)
Q Consensus 100 ~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~gw~ 178 (343)
..+.+.+++..++.|+ +.+...|..++.+.+..++++ ..++.++.....|+.-++||.++|.+.. .|-.
T Consensus 100 ---~~~~~~Ll~~~fl~g~-~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~ 169 (524)
T PF05977_consen 100 ---LLSPWLLLILTFLLGI-GSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAA 169 (524)
T ss_pred ---cCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 1246777777889999 999999999999999997653 7788888889999999999999999888 8888
Q ss_pred ccchhHHHHHHHHHHHHHhccc
Q 044630 179 WGFTIPTVCLFCGLVLLFAGMR 200 (343)
Q Consensus 179 ~~F~i~~~~~~l~~~~~~~~~~ 200 (343)
..|.+.++..+++++.+...++
T Consensus 170 ~~f~inalsfl~~i~~l~~~~~ 191 (524)
T PF05977_consen 170 AAFLINALSFLISILALLRWKP 191 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHccc
Confidence 8999988887776655544443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.3e-09 Score=98.42 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=124.5
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH---HHHHHHHhhcCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLG---MLMVTLTAIVPQL 83 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g---~~~l~~~~~~~~~ 83 (343)
|.-+.+.+.+..++.+++|+|+.|.+++..+-.+...+..++-|.+.||+ |-|++..++.++. .+.+.....
T Consensus 27 F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~~IP~~~~~~a~~---- 101 (417)
T COG2223 27 FMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLLLIPCLGLAFAVT---- 101 (417)
T ss_pred HHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHHHHHHHHHHHHcc----
Confidence 44456677788899999999999999999999999999999999999995 7777777665222 222222211
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 044630 84 RPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLL 163 (343)
Q Consensus 84 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ 163 (343)
..+.+.+++...++|+ .|+..+...++++..||+++ ++.+.+++- ..|+|..
T Consensus 102 -------------------~~~~~~ll~~gll~G~--~GasFav~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~a 153 (417)
T COG2223 102 -------------------YPSTWQLLVIGLLLGL--AGASFAVGMPNASFFFPKEK------QGLALGIAG-AGNLGVA 153 (417)
T ss_pred -------------------CCchHHHHHHHHHHhc--ccceehcccccccccCChhh------hhHHHHHhc-cccccHH
Confidence 0123456666667777 45566777889999998753 788899888 8999999
Q ss_pred HHHhhhheeee-cc---ccccchhHHHHHHHHHHHHHhccce
Q 044630 164 ITSTIVAYVQT-VS---WAWGFTIPTVCLFCGLVLLFAGMRI 201 (343)
Q Consensus 164 ig~~~~~~l~~-~g---w~~~F~i~~~~~~l~~~~~~~~~~~ 201 (343)
+...+.+.+.. .+ |+..-.+..+.++++.+.++++.+.
T Consensus 154 v~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 154 VAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999888 77 9999999999998888887776543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-08 Score=99.51 Aligned_cols=167 Identities=19% Similarity=0.209 Sum_probs=130.4
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHH--HHHHHHHhhcC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF--VTIVLGFLLG--MLMVTLTAIVP 81 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~--~~i~~~~~~g--~~~l~~~~~~~ 81 (343)
+=+...+......|.++++|++..+...+..+..+...++.+++|++.|| +|.| +++.++..+. ..+..+..+.+
T Consensus 294 ~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~~~~i~~~g~~G~~~ 372 (477)
T PF11700_consen 294 SDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLILWIIIPLYGLFGFWP 372 (477)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34667788888899999999999999999889999999999999999999 5999 8887776211 11111111112
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
... + -.+.+.+++.-.+.|+ ..|+..+..-++.++..|+++ .+.+|+.|....-..
T Consensus 373 ~~~----g-------------~~~~~~f~~~a~~~G~-~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~s 428 (477)
T PF11700_consen 373 SFF----G-------------LKSPWEFWVLAVLIGL-FMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKAS 428 (477)
T ss_pred ccc----C-------------cccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHH
Confidence 100 0 0134556666678999 999999999999999998753 688999999999999
Q ss_pred HHHHHhhhheeee--ccccccchhHHHHHHHHHHHHHh
Q 044630 162 LLITSTIVAYVQT--VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 162 ~~ig~~~~~~l~~--~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
+.+||.+.+.+.+ .+-|.+|....++++++++++..
T Consensus 429 s~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 429 SWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 9999999999998 56899999888888888877654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.2e-09 Score=101.95 Aligned_cols=165 Identities=13% Similarity=0.146 Sum_probs=104.7
Q ss_pred hhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHH-HHH-HHHHHHHHHHhh
Q 044630 5 ERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAY---IGKFVTIV-LGF-LLGMLMVTLTAI 79 (343)
Q Consensus 5 e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~---lGr~~~i~-~~~-~~g~~~l~~~~~ 79 (343)
....+..+..+++.|+++.+|++.+.++.++.+..+...+..++.|+++||. +||||..+ ++. ..+... .+...
T Consensus 21 ~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~-~l~f~ 99 (444)
T PRK09669 21 CNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVC-LLTFY 99 (444)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHH-HHHHh
Confidence 3444566678899999999999999999999999999999999999999993 38866655 443 222222 12212
Q ss_pred cCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHH
Q 044630 80 VPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFT 159 (343)
Q Consensus 80 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~ 159 (343)
.|... .......+++...+.++ +.........++.+|..++ ++| |.+..++.....+
T Consensus 100 ~p~~~-----------------~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~~t~~--~~e---R~~l~~~r~~~~~ 156 (444)
T PRK09669 100 TPDFG-----------------ATGKIIYACVTYILLSL-VYTAINVPYCAMPGAITND--PRE---RHSLQSWRFALSF 156 (444)
T ss_pred CCCCC-----------------cchHHHHHHHHHHHHHH-HHHhhcchHHHhHHHhcCC--HHH---HHHHHHHHHHHHH
Confidence 23211 01223444444444555 4445566677888887654 222 6667777777777
Q ss_pred HHHHHHHhhhh----eee--e--ccccccchhHHHHHHHHHH
Q 044630 160 LVLLITSTIVA----YVQ--T--VSWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 160 iG~~ig~~~~~----~l~--~--~gw~~~F~i~~~~~~l~~~ 193 (343)
+|..+++.+.. ++. + .+|+..+.+.+++.++..+
T Consensus 157 ~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 157 IGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 87777665332 221 1 4677777766665544443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=101.72 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=101.7
Q ss_pred hhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-----HHH--HHHHHHHHHHHHHhhcC
Q 044630 9 SFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFV-----TIV--LGFLLGMLMVTLTAIVP 81 (343)
Q Consensus 9 ~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~-----~i~--~~~~~g~~~l~~~~~~~ 81 (343)
++++..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+ |||+ ... +..+++.+.+.+... .
T Consensus 268 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~l~~i~~~~~~~-~ 345 (476)
T PLN00028 268 ELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQTLGGVFCIWLGR-A 345 (476)
T ss_pred HHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHHHHHHHHHHhcc-c
Confidence 345667788999999999999999999999999999999999999994 8762 222 222222111111111 0
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
.+.....+.+++.++ +.++..+...+...+..+ +.++...++...+.++|
T Consensus 346 ----------------------~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~g~lg 395 (476)
T PLN00028 346 ----------------------NSLGAAIVVMILFSI-FVQAACGATFGIVPFVSR-------RSLGVISGLTGAGGNVG 395 (476)
T ss_pred ----------------------chHHHHHHHHHHHHH-HHHHhhhhhcccCcccCh-------hhchhhhhhhhccccHH
Confidence 122333334444455 444444444444444322 13778888887777888
Q ss_pred HHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhcc
Q 044630 162 LLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGM 199 (343)
Q Consensus 162 ~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~ 199 (343)
+.+++.+.+ ..+ .+|+.+|.+.+++++++.++.++.+
T Consensus 396 ~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 396 AVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 888877654 333 6799999999888888877766543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.4e-09 Score=102.63 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=105.4
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-H--HHHHHHHHHhhcCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-L--LGMLMVTLTAIVPQL 83 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~--~g~~~l~~~~~~~~~ 83 (343)
..++++..+++.|+++..|++..+++.....+.+...++.+++|+++||+ |+++....+. . ++.+.+......+.
T Consensus 265 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 342 (438)
T TIGR00712 265 LLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVTIAVIVYWMNPA- 342 (438)
T ss_pred HHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHHHHHHhcCC-
Confidence 45578889999999999999999999999999999999999999999995 6543222232 1 11111111111010
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH-
Q 044630 84 RPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL- 162 (343)
Q Consensus 84 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~- 162 (343)
.+.+.....++..++ +..+..........|.++++ .|+++.++++...++|+
T Consensus 343 --------------------~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~gg~ 395 (438)
T TIGR00712 343 --------------------GNPLVDMICMIVIGF-LIYGPVMLIGLHALELAPKK------AAGTAAGFTGLFGYLGGS 395 (438)
T ss_pred --------------------CchHHHHHHHHHHHH-HHccHHHHHHHHHHHhcChh------heeeehhhhchHHHhhhh
Confidence 112223333344444 33222222234556777643 37888898888888875
Q ss_pred HHHHhhhheeee-ccccccchhHHHHHHHHHHHHHh
Q 044630 163 LITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 163 ~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
+++|.+.|++.+ .||..+|.+.+++.+++++..+.
T Consensus 396 ~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 396 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred hhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 689999999988 89999998877766666555543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-08 Score=96.16 Aligned_cols=157 Identities=7% Similarity=0.048 Sum_probs=117.7
Q ss_pred hhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044630 5 ERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLR 84 (343)
Q Consensus 5 e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~ 84 (343)
-..++++..++++.|+++ +|.+..+++...+.......+..++.|++.||+ |+|+.+.++.+...+-..+.++.+
T Consensus 217 ~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~--- 291 (382)
T TIGR00902 217 IQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVGRWAIIGAIE--- 291 (382)
T ss_pred HHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHHHHHHHHhHh---
Confidence 345677788889999975 899999999998888888888899999999995 999999888722222112222212
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHH-HHHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYY-TTFTLVLL 163 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y-~~~~iG~~ 163 (343)
+.+.++....+.|+ ..|...+....++.+. +++ .++++.+.+. .+..+|..
T Consensus 292 --------------------~~~~~~~~q~l~g~-~~~~~~~~~~~~i~~~-~~~------~~~~~q~~~~~~~~g~g~~ 343 (382)
T TIGR00902 292 --------------------AFPLIFLLQILHCG-TFAVCHLAAMRYIAAQ-PGS------EIAKLQALYNALAMGGLIA 343 (382)
T ss_pred --------------------hHHHHHHHHHHHHH-HHHHHHHHHHHHHHhC-CHh------hHHHHHHHHHHHHHHHHHH
Confidence 35666777788899 9999999999999876 543 2566677765 46779999
Q ss_pred HHHhhhheeee-ccccccchhHHHHHHHHHHHH
Q 044630 164 ITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 164 ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~ 195 (343)
+++.++|++.| .|+ ..|.+.++..++++++.
T Consensus 344 ~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 344 IFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 99999999999 886 56777776666665443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-08 Score=95.12 Aligned_cols=145 Identities=12% Similarity=0.070 Sum_probs=107.3
Q ss_pred hhhHHHHHHhhHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 044630 11 GIMAIFTVYLLNE--YNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHC 88 (343)
Q Consensus 11 g~~~~L~~yl~~~--lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c 88 (343)
++..+++.|+.+. +|++..+++...+.+.++..++.+++++++|| +|++|.+.++..++.+...+....+
T Consensus 158 ~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~~------- 229 (310)
T TIGR01272 158 SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALTH------- 229 (310)
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHcC-------
Confidence 5667899999864 79999999999999999999999999999999 5999988877633332222221111
Q ss_pred CCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 044630 89 TNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTI 168 (343)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~ 168 (343)
... ...+..+.|+ +.+...|...+...+.++++. .+.++ . .....+|+++.|.+
T Consensus 230 ----------------~~~-~~~~~~l~g~-~~s~i~P~~~s~a~~~~~~~~-----~~asa--i-~~~~~~Gg~i~P~l 283 (310)
T TIGR01272 230 ----------------GYV-AMWFVLALGL-FNSIMFPTIFSLALNALGRHT-----SQGSG--I-LCLAIVGGAIVPLL 283 (310)
T ss_pred ----------------CHH-HHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhh-----hhhHH--H-HHHHHhcchHHHHH
Confidence 111 2235567889 999999999998888876531 13333 3 35567899999999
Q ss_pred hheeee-ccccccchhHHHHHH
Q 044630 169 VAYVQT-VSWAWGFTIPTVCLF 189 (343)
Q Consensus 169 ~~~l~~-~gw~~~F~i~~~~~~ 189 (343)
.|++.| .|.+.+|.++.++.+
T Consensus 284 ~G~lad~~g~~~a~~v~~~~~~ 305 (310)
T TIGR01272 284 QGSLADCLGIQLAFALPVPCYL 305 (310)
T ss_pred HHHHHHhccchHHHHHHHHHHH
Confidence 999999 888888886665543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=96.91 Aligned_cols=167 Identities=14% Similarity=0.077 Sum_probs=113.1
Q ss_pred HhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCC
Q 044630 8 GSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPP 86 (343)
Q Consensus 8 ~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~ 86 (343)
+|.|+...++.|+++++|++..+|+.....+.....+..++||+||||+ |.+|++.+.. ........++.. ++..
T Consensus 233 ~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~~~~~l~~~-~~~~-- 308 (417)
T COG2223 233 GFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMALAAALLSLF-LTGF-- 308 (417)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHHHHHHHHcc-cccc--
Confidence 5778999999999999999999999999999999999999999999996 7777666554 211111112211 2100
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 044630 87 HCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITS 166 (343)
Q Consensus 87 ~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~ 166 (343)
........++.....+.+ ..|.-+.....++...|++ +.+...++.-...++|++.=|
T Consensus 309 --------------~~~~~~~~~~~~~l~l~~-~~G~GnGsvfk~Ip~if~~-------~~G~v~G~vga~G~lGGf~lp 366 (417)
T COG2223 309 --------------GHGGSFVVFVAVFLALFV-FAGLGNGSVFKMIPVIFPK-------ETGAVTGIVGAIGGLGGFFLP 366 (417)
T ss_pred --------------ccCcchHHHHHHHHHHHH-HhccCcchheeechHHHHh-------hhhHHHHHHHHhccccccchh
Confidence 001123333333333333 4444444445566666643 257777888888899988888
Q ss_pred hhhheeee--ccccccchhHHHHHHHHHHHHHhccc
Q 044630 167 TIVAYVQT--VSWAWGFTIPTVCLFCGLVLLFAGMR 200 (343)
Q Consensus 167 ~~~~~l~~--~gw~~~F~i~~~~~~l~~~~~~~~~~ 200 (343)
...+...+ .++..+|.+.....+++.+..+..+.
T Consensus 367 ~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 367 LAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877 45999999888887777776655443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-08 Score=99.83 Aligned_cols=151 Identities=16% Similarity=0.158 Sum_probs=112.0
Q ss_pred hhhhHHHHHHhhHh-----cCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhh
Q 044630 10 FGIMAIFTVYLLNE-----YNVSQ--AYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAI 79 (343)
Q Consensus 10 yg~~~~L~~yl~~~-----lg~s~--~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~ 79 (343)
.|..+....++.+. ...+. .+.+.+.+.+.++..++.++.|.++|++ |||++++++. .+|.++...+
T Consensus 63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a-- 139 (513)
T KOG0254|consen 63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA-- 139 (513)
T ss_pred cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh--
Confidence 35555555555542 12222 3448999999999999999999999995 9999999997 5565554433
Q ss_pred cCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHH
Q 044630 80 VPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFT 159 (343)
Q Consensus 80 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~ 159 (343)
+ +...+++++++.|+ |.|+.....+.+++|.-+++ .|+...+.+....+
T Consensus 140 -~-----------------------~~~~l~~GR~l~G~-g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~ 188 (513)
T KOG0254|consen 140 -P-----------------------SWYQLIVGRILTGL-GVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFIT 188 (513)
T ss_pred -h-----------------------hHHHHHHHHHHhcc-chhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHH
Confidence 2 46789999999999 99999999999999987643 48888888889999
Q ss_pred HHHHHHHhhhheeeec--cccccchhHHHHHHHHHHH
Q 044630 160 LVLLITSTIVAYVQTV--SWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 160 iG~~ig~~~~~~l~~~--gw~~~F~i~~~~~~l~~~~ 194 (343)
+|.+++..+.....+. +||..+++..+..++..+.
T Consensus 189 ~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 189 IGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence 9999985554444433 8998888766654443333
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.2e-08 Score=94.53 Aligned_cols=146 Identities=10% Similarity=0.086 Sum_probs=95.1
Q ss_pred hHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCccccccc
Q 044630 21 LNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQ 97 (343)
Q Consensus 21 ~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~ 97 (343)
.+++|++...+........+...++.+++|+++||+ |||+.++.+. .++.+++..... +.
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~-~~--------------- 360 (479)
T PRK10077 298 FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY-TQ--------------- 360 (479)
T ss_pred HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHh-cC---------------
Confidence 356888877777666667778889999999999995 9999998877 233222221110 00
Q ss_pred cCCCCcchHHHHHHHHHHHHHhccCC-CccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhh------
Q 044630 98 CIGPNRNQLAFLHVAMFWLAVGGAGG-IRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVA------ 170 (343)
Q Consensus 98 ~~~~~~~~~~~l~~~l~l~~~~G~g~-~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~------ 170 (343)
.... ....++.+.+. +.+. ..|+..++..|.++++ .|++++++.+...++|.++++.+.+
T Consensus 361 -----~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~p~~------~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~ 427 (479)
T PRK10077 361 -----APGI-VALLSMLFYVA-AFAMSWGPVCWVLLSEIFPNA------IRGKALAIAVAAQWIANYFVSWTFPMMDKNS 427 (479)
T ss_pred -----cccH-HHHHHHHHHHH-HHhccccchhHHHhHhhCChh------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 0111 22223333333 3332 3477789999998753 3899999988888888887755443
Q ss_pred eeee-ccccccchhHHHHHHHHHHHHH
Q 044630 171 YVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 171 ~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
++.+ .+|+..|.+.++..+++.+..+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (479)
T PRK10077 428 WLVAHFHNGFSYWIYGCMGVLAALFMW 454 (479)
T ss_pred chhhhccCccHHHHHHHHHHHHHHHHH
Confidence 5556 8888888887766555554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.4e-08 Score=93.37 Aligned_cols=167 Identities=14% Similarity=0.084 Sum_probs=122.0
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCC
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQ 82 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~ 82 (343)
+---+.|...+++-.|+++..|++....+.+..+|.+...++.+++|+++|| +.|+++.... ++...++.+... +
T Consensus 222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~~-~- 297 (394)
T COG2814 222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTFT-G- 297 (394)
T ss_pred HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHHh-c-
Confidence 3345678889999999999999999999999999999999999999999999 7777877765 444443333321 1
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
.+.+.....+++.|+ ..+..-.....-.++.. ++ .++.+.+++..+.|+|.
T Consensus 298 ---------------------~~~~~~~~~~~~wg~-a~~~~~~~~~~~~a~~~-p~------~~~~a~sl~~aa~nlgi 348 (394)
T COG2814 298 ---------------------ASPALALALLFLWGF-AFSPALQGLQTRLARLA-PD------AADLAGSLNVAAFNLGI 348 (394)
T ss_pred ---------------------chHHHHHHHHHHHHH-HhhhhhhHHHHHhcccC-CC------chHHHHHHHHHHHHHHH
Confidence 123445555555666 55444333333344421 22 25667778888899999
Q ss_pred HHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccceEE
Q 044630 163 LITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRIYV 203 (343)
Q Consensus 163 ~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~~~ 203 (343)
.+|..++|.+.| +|+....+++++..++++++.+...++.+
T Consensus 349 a~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~ 390 (394)
T COG2814 349 ALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDR 390 (394)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999888 99999999999999888887776655543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-08 Score=94.44 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=101.8
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHH-HHHHHHhhcCCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGM-LMVTLTAIVPQLR 84 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~-~~l~~~~~~~~~~ 84 (343)
..++++..+++.|+.+.+|++..+++.....+.+...++.+++|+++||..+||+...... ..+. ..+......+
T Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 306 (379)
T TIGR00881 230 VVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP--- 306 (379)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc---
Confidence 3455677788999999999999999999999999999999999999998534444333222 1111 1111111101
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLI 164 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~i 164 (343)
..+.....+..++.|+ ..++..+....+..|.+|++ .|++.++++....++|..+
T Consensus 307 ------------------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~ 361 (379)
T TIGR00881 307 ------------------AANPLMDLICLFALGF-LVYGPQMLIGVIASELAPKK------AAGTAAGFVGFFAYLGGIL 361 (379)
T ss_pred ------------------chhHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcCcc------hhHHHHHHHHHhhhhhhhh
Confidence 0123334444455565 45555555567778887654 3889999999999999999
Q ss_pred HHhhhheeee-ccccccc
Q 044630 165 TSTIVAYVQT-VSWAWGF 181 (343)
Q Consensus 165 g~~~~~~l~~-~gw~~~F 181 (343)
++.+.|++.+ .||+..|
T Consensus 362 ~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 362 AGLPLGYLADGFGWAGAF 379 (379)
T ss_pred hhhhHHHHHHhhcccccC
Confidence 9999999999 8998765
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.8e-08 Score=94.63 Aligned_cols=164 Identities=12% Similarity=-0.029 Sum_probs=107.4
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH--------HHHH-HHHHHHH
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTI--------VLGF-LLGMLMV 74 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i--------~~~~-~~g~~~l 74 (343)
+..++++++..++|.|+.+.+|++..+++...+...++..++.+++|+++||+ ++|+.. ..+. .++....
T Consensus 272 ~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (465)
T TIGR00894 272 GHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIFNGIGGLGPGIF 350 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 44567788889999999999999999999999998999999999999999995 544211 1111 1111111
Q ss_pred HHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHH
Q 044630 75 TLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWY 154 (343)
Q Consensus 75 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~ 154 (343)
.+...... .+.....+.+.+.+. +.++..++......|..+ +.++...++.
T Consensus 351 ~~~~~~~~---------------------~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~ 401 (465)
T TIGR00894 351 AYALPYLS---------------------AAFYLTIIILTLANA-VSSGPLAGVLINSLDLAP-------RFLGFIKGIT 401 (465)
T ss_pred HHHHHHcC---------------------CchHHHHHHHHHHHH-HhhhhhhhhhhchhhcCh-------hHHHHHHHHH
Confidence 11100000 012223333344444 445444444443334332 1478888888
Q ss_pred HHHHHHHHHHHHhhhheeee-c---cccccchhHHHHHHHHHHHHHh
Q 044630 155 YTTFTLVLLITSTIVAYVQT-V---SWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 155 y~~~~iG~~ig~~~~~~l~~-~---gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
....++|++++|.+.+++.+ . +|..+|.+.++..+++.+.+..
T Consensus 402 ~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 402 GLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 99999999999999999876 3 4888999888888777665544
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.9e-08 Score=94.97 Aligned_cols=140 Identities=17% Similarity=0.182 Sum_probs=96.2
Q ss_pred hhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 044630 11 GIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTN 90 (343)
Q Consensus 11 g~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~ 90 (343)
++..+++.|+.+ .|++..+++...+...++..++.+++|+++|| +|||+.+..+.++..+.+......+.
T Consensus 249 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 318 (426)
T PRK12307 249 PIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIPQ-------- 318 (426)
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHcc--------
Confidence 356678888876 59999999988888889999999999999999 49999988776222221111111111
Q ss_pred ccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044630 91 EERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVA 170 (343)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~ 170 (343)
.....+...++..+. +..+..+..+.++.|.++++ .+++++++.+...++|+.++|.+.+
T Consensus 319 -------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~~~~~gp~~~g 378 (426)
T PRK12307 319 -------------DNYLLLGACLFGLMA-TNVGVGGLVPKFLYDYFPLE------VRGLGTGLIYNLAATSGTFNSMAAT 378 (426)
T ss_pred -------------ccHHHHHHHHHHHHH-hcccHhHHHHHHHHHhCcHH------HHhhhhhHHHHHHhHHHHHHHHHHH
Confidence 011222222222333 33344455667788888754 3889999999999999999999999
Q ss_pred eeee-cccccc
Q 044630 171 YVQT-VSWAWG 180 (343)
Q Consensus 171 ~l~~-~gw~~~ 180 (343)
++.+ .|+...
T Consensus 379 ~l~~~~g~~~~ 389 (426)
T PRK12307 379 WLGITMGLGAA 389 (426)
T ss_pred HHHHcccHHHH
Confidence 9988 765543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.3e-08 Score=97.35 Aligned_cols=152 Identities=11% Similarity=0.061 Sum_probs=108.7
Q ss_pred HHhhhhhHHHHHHh-hHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044630 7 LGSFGIMAIFTVYL-LNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRP 85 (343)
Q Consensus 7 ~~~yg~~~~L~~yl-~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~ 85 (343)
.+.++...+++.|+ ++.+|++..+++..+..+.++..++.+++|++.||+ ||||++..+..++...+.+..+.+
T Consensus 272 ~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~---- 346 (438)
T PRK10133 272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAFAG---- 346 (438)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHcC----
Confidence 44555567788886 567899999999999999999999999999999995 999998888744333332222212
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 044630 86 PHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLIT 165 (343)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig 165 (343)
.. ....+..+.++ |.|...|+..+...+.++++. ..++.. ... ..+|+.++
T Consensus 347 -------------------~~-~~~~~~~l~gl-g~~~i~P~~~s~a~~~~~~~~-----~~as~l--~~~-~~~g~~~~ 397 (438)
T PRK10133 347 -------------------GH-VGLIALTLCSA-FMSIQYPTIFSLGIKNLGQDT-----KYGSSF--IVM-TIIGGGIV 397 (438)
T ss_pred -------------------Ch-HHHHHHHHHHH-HHHHHHHHHHHHHHcccchhh-----ccchhH--HhH-HhccchHH
Confidence 11 12345667899 999999999999999876531 123322 222 23577788
Q ss_pred Hhhhheeee-cc-ccccchhHHHHHHHHH
Q 044630 166 STIVAYVQT-VS-WAWGFTIPTVCLFCGL 192 (343)
Q Consensus 166 ~~~~~~l~~-~g-w~~~F~i~~~~~~l~~ 192 (343)
+.+.|++.+ .| -+.+|.++.++.+..+
T Consensus 398 ~~i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 398 TPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 888899888 76 7888887777655443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-08 Score=93.98 Aligned_cols=156 Identities=8% Similarity=-0.009 Sum_probs=100.5
Q ss_pred hhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCC
Q 044630 9 SFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPH 87 (343)
Q Consensus 9 ~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~ 87 (343)
++...++++.|+.+.+|++..+++...+...+...++.++.|+++|| +|+|+.+..+. +.+...+.+....+
T Consensus 215 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~~~~~~~~------ 287 (382)
T PRK10091 215 VFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALLMLFFFGG------ 287 (382)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHHHHHHHHh------
Confidence 33445566778888899999999999999999999999999999999 59999988776 22222111111101
Q ss_pred CCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 044630 88 CTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITST 167 (343)
Q Consensus 88 c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~ 167 (343)
+.+...+..++.+. |.++..+.......+..++. + .++.. ......++|..+||.
T Consensus 288 -----------------~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~---~--~~~~~--~~~~~~~~g~~~Gp~ 342 (382)
T PRK10091 288 -----------------MKTASLIFAFICCA-GLFALSAPLQILLLQNAKGG---E--LLGAA--GGQIAFNLGSAIGAY 342 (382)
T ss_pred -----------------hHHHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCcc---h--HHHHH--HHHHHHHHHHHHHHH
Confidence 12233334444555 55444444343333333221 1 13332 234567899999999
Q ss_pred hhheeee--ccccccchhHHHHHHHHHHHHH
Q 044630 168 IVAYVQT--VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 168 ~~~~l~~--~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
+.|++.| .||+..|.+.++..++++....
T Consensus 343 ~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 343 CGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 9999877 6899999988776655544433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.5e-08 Score=92.49 Aligned_cols=163 Identities=16% Similarity=0.093 Sum_probs=109.0
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchHHHHHHHHHHH-HH-HHHHHhhc
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNG-VADFLTVIFAFLADAYIGKFVTIVLGFLLG-ML-MVTLTAIV 80 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~-~~~~~~l~gG~laDr~lGr~~~i~~~~~~g-~~-~l~~~~~~ 80 (343)
+...+..+..++.+.|+.+ .|++..+.+.+...... ...++.+++|++.||+ |+||.+.++..+. .. ++.+....
T Consensus 219 l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~~ 296 (390)
T TIGR02718 219 LSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSLALLWFAQAA 296 (390)
T ss_pred HHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677778888876 79999999998887764 5556788999999994 9999998776221 11 11111000
Q ss_pred CCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH
Q 044630 81 PQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL 160 (343)
Q Consensus 81 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i 160 (343)
.... ......+....+.++ +.|...+...+...+..+++ +.+++.+++.....++
T Consensus 297 ~~~~-------------------~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~l 351 (390)
T TIGR02718 297 FWLA-------------------PGIAVAWSCSAFGSL-ITGITSVAIYTAFMRFAGDG-----DQAGTDVTAVQSTRDL 351 (390)
T ss_pred cccC-------------------CcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcc-----cchHHHHHHHHHHHHH
Confidence 0000 012222333333344 55556666666666665442 1378888999888999
Q ss_pred HHHHHHhhhheeee-ccccccchhHHHHHHHHHH
Q 044630 161 VLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 161 G~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~ 193 (343)
|..+|+.+.|++.+ .||+..|.+.+++.+++++
T Consensus 352 g~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 352 GELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999999999 8999999887776666544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=5e-08 Score=91.93 Aligned_cols=138 Identities=11% Similarity=0.148 Sum_probs=107.0
Q ss_pred hHHhhhhh-HHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCC
Q 044630 6 RLGSFGIM-AIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQL 83 (343)
Q Consensus 6 ~~~~yg~~-~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~ 83 (343)
.+.++++. ..++.|+++.+|.+..+.+.+.....+...++.++.|++.||+ ||++.+..+. ..+...+ +....+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~-- 298 (365)
T TIGR00900 223 NLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLAIL-VVGLTP-- 298 (365)
T ss_pred HHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHH-HHHhhc--
Confidence 34555565 6677788777999999999999999999999999999999995 9999888765 2232222 221111
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 044630 84 RPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLL 163 (343)
Q Consensus 84 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ 163 (343)
. +.+.+++..++.|+ +.+...+...++..|..|++ .|++.+++++...++|..
T Consensus 299 -------------------~-~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~ 351 (365)
T TIGR00900 299 -------------------P-NFPLFLVLWFAIGV-GYGPINVPQGTLLQRRVPAE------LLGRVFGAQFSLSHAAWP 351 (365)
T ss_pred -------------------h-hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHH
Confidence 0 24566677788899 99988898999999988753 389999999999999999
Q ss_pred HHHhhhheeee
Q 044630 164 ITSTIVAYVQT 174 (343)
Q Consensus 164 ig~~~~~~l~~ 174 (343)
+++.+.|++.|
T Consensus 352 ~g~~~~g~l~~ 362 (365)
T TIGR00900 352 LGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHH
Confidence 99999988766
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.5e-08 Score=95.49 Aligned_cols=148 Identities=11% Similarity=0.085 Sum_probs=101.2
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRP 85 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~ 85 (343)
.++++......+.|++..+| +....+.+.....+...++.+++|+++||+ |||+++.++..+..+...+..+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~---- 308 (437)
T TIGR00792 235 NLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLGYLIFFFAG---- 308 (437)
T ss_pred HHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcc----
Confidence 34444444445556655566 455666677777888889999999999995 999999888622221111111111
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCC-cchhhhHHHHHHHHHHHHHHHHHH
Q 044630 86 PHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRT-DKGRKEINSFFNWYYTTFTLVLLI 164 (343)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~-~~~~~~~~~~f~~~y~~~~iG~~i 164 (343)
.+.+.+++...+.++ |.|...+...++.+|..|.++ +.+++.++.+++.+.+..++|..+
T Consensus 309 ------------------~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~l 369 (437)
T TIGR00792 309 ------------------SNLPLILVLIILAGF-GQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQAL 369 (437)
T ss_pred ------------------hhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHH
Confidence 123455556667788 888888889999999876432 112234788899999999999999
Q ss_pred HHhhhheeee-cccc
Q 044630 165 TSTIVAYVQT-VSWA 178 (343)
Q Consensus 165 g~~~~~~l~~-~gw~ 178 (343)
++.+.+++.+ .||.
T Consensus 370 g~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 370 AGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHcCCC
Confidence 9999998877 6664
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-07 Score=90.31 Aligned_cols=141 Identities=13% Similarity=0.055 Sum_probs=100.4
Q ss_pred hhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCC
Q 044630 9 SFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRP 85 (343)
Q Consensus 9 ~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~ 85 (343)
+++.....+.|+.+++|++..+.+.......++..++.++.|+++||+ |||+.+.++. .+|..++......+
T Consensus 231 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~~~~~~~~~~---- 305 (406)
T PRK15402 231 LLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLLLAALATVIS---- 305 (406)
T ss_pred HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHcc----
Confidence 444555678888888999999988887777777888999999999995 9999988876 23333333221100
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 044630 86 PHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLIT 165 (343)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig 165 (343)
......++++..+.++ |.|...+...+...+..+ + .+++..+.+++..++|..+|
T Consensus 306 -----------------~~~~~~~~~~~~~~g~-g~~~~~~~~~~~~~~~~~-~------~~g~~~~~~~~~~~~~~~~g 360 (406)
T PRK15402 306 -----------------SHAYLWLTAGLSLYAF-GIGLANAGLYRLTLFSSD-V------SKGTVSAAMGMLSMLIFTVG 360 (406)
T ss_pred -----------------cccHHHHHHHHHHHHH-HHHHHhhhHHHHHhhhcc-c------cccHHHHHHHHHHHHHHHHH
Confidence 1134556677788888 888877766665533322 1 27888888888889999999
Q ss_pred Hhhhheeee-ccccc
Q 044630 166 STIVAYVQT-VSWAW 179 (343)
Q Consensus 166 ~~~~~~l~~-~gw~~ 179 (343)
+.+.+++.+ .++..
T Consensus 361 ~~~~~~l~~~~~~~~ 375 (406)
T PRK15402 361 IELSKHAYLGGGNGL 375 (406)
T ss_pred HHHHHhcccCCchHH
Confidence 999999877 55443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-07 Score=92.95 Aligned_cols=145 Identities=14% Similarity=0.045 Sum_probs=90.4
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHH-HHH-HHHHHHHHHHh
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAY---IGKFVTIV-LGF-LLGMLMVTLTA 78 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~---lGr~~~i~-~~~-~~g~~~l~~~~ 78 (343)
...+++..+..+++.|+++.+|++..+++.+.....+...+..++.|+++||. +||||..+ ++. ..+.....+..
T Consensus 19 ~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~ 98 (448)
T PRK09848 19 ANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFW 98 (448)
T ss_pred HhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHh
Confidence 34555556667888999999999999999999999999999999999999994 38887654 333 12211111111
Q ss_pred hcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHH--
Q 044630 79 IVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYT-- 156 (343)
Q Consensus 79 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~-- 156 (343)
.|.- .+........+....+.++ +.+...+...++..+...+ ++| |.+..++-.+
T Consensus 99 -~~~~----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~--~~~---r~~~~~~r~~~~ 155 (448)
T PRK09848 99 -VPTD----------------WSHSSKVVYAYLTYMGLGL-CYSLVNIPYGSLATAMTQQ--PQS---RARLGAARGIAA 155 (448)
T ss_pred -CcCC----------------CCcchHHHHHHHHHHHHHH-HHHHhcccHhhhhhhhcCC--HHH---HHHHHHHHHHHH
Confidence 1210 0001123334444556677 7888888778877766544 333 3444333322
Q ss_pred ---HHHHHHHHHHhhhhe
Q 044630 157 ---TFTLVLLITSTIVAY 171 (343)
Q Consensus 157 ---~~~iG~~ig~~~~~~ 171 (343)
..++|..++|.+.+.
T Consensus 156 ~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 156 SLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345666666666554
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.3e-08 Score=92.37 Aligned_cols=135 Identities=17% Similarity=0.136 Sum_probs=101.3
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRP 85 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~ 85 (343)
.++++++..+++ |+.+++|++..+++.......++..++.+++|+++||+ |||+.+......+.....+.....
T Consensus 263 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---- 336 (398)
T TIGR00895 263 LVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFAVLVGSTLF---- 336 (398)
T ss_pred HHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHhh----
Confidence 445666666777 66678899999999999999999999999999999995 998555444333322222211101
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 044630 86 PHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLIT 165 (343)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig 165 (343)
+...++...++.++ +.++..+...++..|.++++ .|++.+++++...++|..+|
T Consensus 337 -------------------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~g 390 (398)
T TIGR00895 337 -------------------SPTLLLLLGAIAGF-FVNGGQSGLYALMALFYPTA------IRATGVGWAIGIGRLGAIIG 390 (398)
T ss_pred -------------------CHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCHH------HHHHHHHHHHHHHHHHHHHH
Confidence 23445566677888 88888899999999998753 38899999999999999999
Q ss_pred Hhhhhee
Q 044630 166 STIVAYV 172 (343)
Q Consensus 166 ~~~~~~l 172 (343)
|.+.|++
T Consensus 391 ~~~~G~l 397 (398)
T TIGR00895 391 PILAGYL 397 (398)
T ss_pred HHhHHhc
Confidence 9998865
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.3e-08 Score=94.84 Aligned_cols=144 Identities=13% Similarity=0.050 Sum_probs=102.3
Q ss_pred hhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH-HHHHHHHHHhhcCCC
Q 044630 5 ERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFL-LGMLMVTLTAIVPQL 83 (343)
Q Consensus 5 e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~-~g~~~l~~~~~~~~~ 83 (343)
..+++.......+.|++..+|.+..+++.......+...++.++.|+++||+ |||+++..+.. .+...+.+. ..+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~-~~~~- 349 (471)
T PRK10504 273 GRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVSLLFM-LVAL- 349 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHH-hccc-
Confidence 3445545556677888888999999999988888888888889999999995 99999987762 222222221 1110
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 044630 84 RPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLL 163 (343)
Q Consensus 84 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ 163 (343)
....+.+.+..++.|+ |.|...+...++..+..+++ .++..++++.+..++|..
T Consensus 350 -------------------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~ 403 (471)
T PRK10504 350 -------------------LGWYYLLPFVLFLQGM-VNSTRFSSMNTLTLKDLPDN------LASSGNSLLSMIMQLSMS 403 (471)
T ss_pred -------------------cccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCHH------hccchHHHHHHHHHHHHH
Confidence 0122333445566777 88877778888888877654 378888999999999999
Q ss_pred HHHhhhheeee-ccc
Q 044630 164 ITSTIVAYVQT-VSW 177 (343)
Q Consensus 164 ig~~~~~~l~~-~gw 177 (343)
+|+.+.+.+-+ .|+
T Consensus 404 ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 404 IGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHhhh
Confidence 99998887655 444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-07 Score=94.72 Aligned_cols=169 Identities=10% Similarity=0.042 Sum_probs=102.9
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH----hccchHHHHHH-HH-HHHHHHHHH
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLAD----AYIGKFVTIVL-GF-LLGMLMVTL 76 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laD----r~lGr~~~i~~-~~-~~g~~~l~~ 76 (343)
+...+.+..+..+++.|+++.+|++...++.+..+..+.-.+..++.|+++| | +||||..++ +. ..+.....+
T Consensus 16 ~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~~ll 94 (473)
T PRK10429 16 FGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVLFLL 94 (473)
T ss_pred hHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHHHHH
Confidence 3445666777788999999999999999999999999999999999999999 5 499665554 43 222221111
Q ss_pred HhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHH
Q 044630 77 TAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYT 156 (343)
Q Consensus 77 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~ 156 (343)
. ..|.. +.......+++...+..+ +.........++++|.-++ ++| |.+.+++-..
T Consensus 95 f-~~p~~-----------------~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~lt~~--~~e---R~~l~~~~~~ 150 (473)
T PRK10429 95 F-SAHLF-----------------EGTAQYVFVCVTYILWGM-TYTIMDIPFWSLVPTLTLD--KRE---REQLVPYPRF 150 (473)
T ss_pred H-cCCCC-----------------CccHHHHHHHHHHHHHHH-HHHHHcchHHhhhHHhCCC--HHH---HHHHHHHHHH
Confidence 1 11211 001122333333344556 6666677777888887644 223 6666666556
Q ss_pred HHHHHHHHHHhhhhe----ee---e-ccccccchhHHHHHHHHHHHHH
Q 044630 157 TFTLVLLITSTIVAY----VQ---T-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 157 ~~~iG~~ig~~~~~~----l~---~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
..++|+.+.+.+... +. + .+|+....+.++..+++.++.+
T Consensus 151 ~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~ 198 (473)
T PRK10429 151 FASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITL 198 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 666665555443322 11 1 3566665555555554443333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=93.53 Aligned_cols=168 Identities=9% Similarity=0.063 Sum_probs=105.8
Q ss_pred HhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCC
Q 044630 8 GSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPP 86 (343)
Q Consensus 8 ~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~ 86 (343)
+|.|....+|.|+++.+ +...+........+...+..+++|+|||| +|++|++.++. .+......+....|.-
T Consensus 267 ~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~~~~~~l~lp~~--- 340 (462)
T PRK15034 267 SFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIFSALLFLTLPGT--- 340 (462)
T ss_pred HHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 56677778999998865 33333333444567788889999999999 59999998887 2222211111111310
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCC----------C-----cchhhhHHHHH
Q 044630 87 HCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSR----------T-----DKGRKEINSFF 151 (343)
Q Consensus 87 ~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~----------~-----~~~~~~~~~~f 151 (343)
+..+.+.+..+...+.+ ..|.-...+..++.+.|+++ + ...+++.+...
T Consensus 341 ---------------~~~~~~~~~~~~~~l~~-~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 404 (462)
T PRK15034 341 ---------------GSGNFIAFYAVFMGLFL-TAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAAL 404 (462)
T ss_pred ---------------cccHHHHHHHHHHHHHH-HhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHH
Confidence 01244555555544445 55555555666666666530 0 01123466777
Q ss_pred HHHHHHHHHHHHHHHhhhheeee--ccccccchhHHHHHHHHHHHHHh
Q 044630 152 NWYYTTFTLVLLITSTIVAYVQT--VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 152 ~~~y~~~~iG~~ig~~~~~~l~~--~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
++.-....+|+++-|.+.++..+ .++..+|.+..+..++++++-+.
T Consensus 405 G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 405 GFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888877777666 67888998888887777666554
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=96.02 Aligned_cols=144 Identities=17% Similarity=0.136 Sum_probs=102.9
Q ss_pred HHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCcc
Q 044630 16 FTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEE 92 (343)
Q Consensus 16 L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~ 92 (343)
....+.+++|++..+.+.+.++... ..++.+++|+++||+ |||+++.++. .+|.++..++.. ...
T Consensus 49 ~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~-~~i--------- 116 (591)
T PTZ00207 49 ISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQ-EVI--------- 116 (591)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhc-ccc---------
Confidence 3346778999999999988876443 345667889999995 9999999997 455554444311 000
Q ss_pred ccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHH-HHhhhhe
Q 044630 93 RIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLI-TSTIVAY 171 (343)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~i-g~~~~~~ 171 (343)
..+.+.+++.+.+.|+ |.+.+.+.....+.+.|++ +|+...++...+.++|+++ +++..++
T Consensus 117 ----------~~s~~~l~l~r~l~G~-G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 117 ----------EGSVVRLSVYNGLMTL-GCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred ----------cCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0246788888999999 9988888888888999863 2789999999999999875 5555555
Q ss_pred eeeccccccchhHHHHHHH
Q 044630 172 VQTVSWAWGFTIPTVCLFC 190 (343)
Q Consensus 172 l~~~gw~~~F~i~~~~~~l 190 (343)
+.+ +|+..|++.+++.++
T Consensus 179 ~~~-~~~~~fl~l~vl~~v 196 (591)
T PTZ00207 179 FSD-NTSAYFFFLMSFALV 196 (591)
T ss_pred HHH-hHHHHHHHHHHHHHH
Confidence 543 566666655554433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-07 Score=88.48 Aligned_cols=145 Identities=14% Similarity=0.225 Sum_probs=97.1
Q ss_pred HhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCC
Q 044630 8 GSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLR 84 (343)
Q Consensus 8 ~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~ 84 (343)
.+++....++.|+.+++|++..+++.+.....+...++.+++|+++||+ |||+.+..+. .++.+++......+
T Consensus 221 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 296 (385)
T TIGR00710 221 GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLLEITAILG--- 296 (385)
T ss_pred HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 4556666778888889999999999999999999999999999999994 9999888775 22332222221100
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH-HHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL-VLL 163 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i-G~~ 163 (343)
......++....+.++ |.+...+...+...|.+++ .+++..+.+...... |++
T Consensus 297 ------------------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~g~i 350 (385)
T TIGR00710 297 ------------------LGSWAMIIGPMMFVGI-GNSMISSIAMAYALEDFPH-------VAGTASALFGTLRLVLGAI 350 (385)
T ss_pred ------------------cchHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCcc-------cchHHHHHHHHHHHHHHHH
Confidence 0123344455566788 8888888888877776642 256777777665554 555
Q ss_pred HHHhhhheeee-ccccccchh
Q 044630 164 ITSTIVAYVQT-VSWAWGFTI 183 (343)
Q Consensus 164 ig~~~~~~l~~-~gw~~~F~i 183 (343)
.++. .+.+.+ .+|...+..
T Consensus 351 ~~~~-~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 351 VGYL-VSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHH-HHhccccChHHHHHHH
Confidence 5554 455555 555444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.8e-08 Score=88.31 Aligned_cols=141 Identities=14% Similarity=0.184 Sum_probs=100.2
Q ss_pred HHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH----HHHHHHHHHHhhcCCCCCCCCC
Q 044630 14 AIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF----LLGMLMVTLTAIVPQLRPPHCT 89 (343)
Q Consensus 14 ~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~----~~g~~~l~~~~~~~~~~~~~c~ 89 (343)
+.-+.|.++.+|+|..+|+.+.+...+.+....++.|.++|++ ||+-..+.+. ++|+.+++++...
T Consensus 285 ~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~tl~~H~~l~Ft~ls--------- 354 (459)
T KOG4686|consen 285 TLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILTLLGHSGLFFTFLS--------- 354 (459)
T ss_pred hhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHHHHHhhhHHhhhcc---------
Confidence 3345788999999999999999999999999999999999996 9987766655 5566666554322
Q ss_pred CccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044630 90 NEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIV 169 (343)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~ 169 (343)
-++++.+.|+ ..........+.++-..|++ +.+++|+..+...|+|-.+.++++
T Consensus 355 -------------------Py~~m~~lGL-sysllAcslWP~va~~vpE~------qLGTaygf~qsIqNLgla~i~Iia 408 (459)
T KOG4686|consen 355 -------------------PYTSMTFLGL-SYSLLACSLWPCVASLVPEE------QLGTAYGFIQSIQNLGLAFIPIIA 408 (459)
T ss_pred -------------------HHHHHHHHhh-hHHHHHHHHhhhhhhhCCHH------HhcchHHHHHHHHhhhhhHHhhhh
Confidence 2334444444 33222222344455555543 489999999999999999999999
Q ss_pred heeee--cc--ccccchhHHHHHHH
Q 044630 170 AYVQT--VS--WAWGFTIPTVCLFC 190 (343)
Q Consensus 170 ~~l~~--~g--w~~~F~i~~~~~~l 190 (343)
+++.| .| |--+|.+..+.+.+
T Consensus 409 g~i~d~~g~y~~le~ffl~~~~~aL 433 (459)
T KOG4686|consen 409 GFIADGDGSYDNLEAFFLIIGLMAL 433 (459)
T ss_pred heeecCCCchhhHHHHHHHHHHHHH
Confidence 99998 33 44456555554443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=91.99 Aligned_cols=149 Identities=11% Similarity=0.039 Sum_probs=90.8
Q ss_pred hHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 044630 13 MAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGK-FVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNE 91 (343)
Q Consensus 13 ~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr-~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~ 91 (343)
.+.++.|+.+++|++..+.+.+.+.+..+..++++++|.++||+ || |+++.++.+++.+...+..+.+
T Consensus 22 ~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~~~~~~---------- 90 (418)
T TIGR00889 22 LVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFFAAQVT---------- 90 (418)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 37788999999999999999999999999999999999999995 65 6676666543333333322211
Q ss_pred cccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCC--CcchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044630 92 ERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSR--TDKGRKEINSFFNWYYTTFTLVLLITSTIV 169 (343)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~--~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~ 169 (343)
+.+.+++.+.+.++ +.+...+...+...+...+. |..+...|.+.++ .+|.++|+.++
T Consensus 91 -------------~~~~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~ 150 (418)
T TIGR00889 91 -------------TPAGMFPVLLANSL-AYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAV 150 (418)
T ss_pred -------------CHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHH
Confidence 24455556666677 66555554444332221100 0000001333333 46777888888
Q ss_pred heeee-ccccccchhHHHHHHHHHH
Q 044630 170 AYVQT-VSWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 170 ~~l~~-~gw~~~F~i~~~~~~l~~~ 193 (343)
+.+.. ..|. .|.+.++..++..+
T Consensus 151 g~l~~~~~~~-~f~~~~~~~~~~~~ 174 (418)
T TIGR00889 151 SLLDIELSNI-QLYITAGSSALLGV 174 (418)
T ss_pred HHhcccchhH-HHHHHHHHHHHHHH
Confidence 77744 3343 45565555544443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.9e-08 Score=95.97 Aligned_cols=143 Identities=16% Similarity=0.149 Sum_probs=111.5
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCccccccccCC
Q 044630 22 NEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIG 100 (343)
Q Consensus 22 ~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~ 100 (343)
+++|+...+-+.+.++|.++..++.+++|+|.||+ .-.+.+.... ..+.+ ..++...
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~-~~~~~~~-------------------- 131 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLF-GFLTAAV-------------------- 131 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHH-HHHHHHH--------------------
Confidence 35678888899999999999999999999999995 8555555444 22222 1222211
Q ss_pred CCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee------e
Q 044630 101 PNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ------T 174 (343)
Q Consensus 101 ~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~------~ 174 (343)
.+.+.+.+.+++.|+ ..+...|+...+++..|++++ |+.-+++++.+.++|.++|.++...+. .
T Consensus 132 ---~s~~~~ialr~llGl-~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 132 ---HSFPGLIALRFLLGL-FESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred ---hhhHHHHHHHHHHHH-HhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 256788899999999 999999999999999998653 888899999999999999998877742 2
Q ss_pred -ccccccchhHHHHHHHHHHHHH
Q 044630 175 -VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 175 -~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
.|||+.|++.+++.++..++.+
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVF 224 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEE
Confidence 7999999999987665544433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=93.70 Aligned_cols=141 Identities=14% Similarity=0.121 Sum_probs=104.9
Q ss_pred hhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHH-hhcCC
Q 044630 5 ERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLT-AIVPQ 82 (343)
Q Consensus 5 e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~-~~~~~ 82 (343)
-.+++++....++.|+++.+|++..+++.......++..++.+++|++.|| +|||+.+.++. ..+...+.+. ...+
T Consensus 267 ~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~~~~~~~~~~~- 344 (485)
T TIGR00711 267 LGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVGFYWRAFTFTP- 344 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHhccCCC-
Confidence 345678888899999999999999999999999999999999999999999 59999988776 2222221111 1101
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
....+.+.....+.|+ |.|...+.......+.++++ .++++.++++...++|+
T Consensus 345 --------------------~~~~~~~~~~~~l~g~-g~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~ 397 (485)
T TIGR00711 345 --------------------DTPFLAIALPQFIRGF-GMGCFFMPLTTIALSGLPPH------KIARGSSLSNFTRQLGG 397 (485)
T ss_pred --------------------CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHH------HHhHHHHHHHHHHHHHH
Confidence 1123455566777888 88887776667666766543 38889999999999999
Q ss_pred HHHHhhhheeee
Q 044630 163 LITSTIVAYVQT 174 (343)
Q Consensus 163 ~ig~~~~~~l~~ 174 (343)
.+|+.+.+.+.+
T Consensus 398 ~ig~~i~g~~~~ 409 (485)
T TIGR00711 398 SIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHH
Confidence 999888765543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=94.27 Aligned_cols=138 Identities=12% Similarity=-0.027 Sum_probs=104.3
Q ss_pred hhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH---HHHHHHHHHhhcC
Q 044630 5 ERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFL---LGMLMVTLTAIVP 81 (343)
Q Consensus 5 e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~---~g~~~l~~~~~~~ 81 (343)
..+++++...+++.|+++.+|++..+++...........++.+++|++.||+ |||+.+..+.+ ++..++.. . .
T Consensus 271 ~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~~~~l~~--~-~ 346 (495)
T PRK14995 271 AMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALSFYGLAM--T-D 346 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHH--h-c
Confidence 3456778888899999999999999999999999999999999999999995 99988877762 23222211 1 1
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
. ..+.+..+...++.|+ |.|...+.......+..+++ +++.+.+.+++..++|
T Consensus 347 ~--------------------~~~~~~~~~~~~l~G~-g~g~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~lG 399 (495)
T PRK14995 347 F--------------------STQQWQAWGLMALLGF-SAASALLASTSAIMAAAPPE------KAAAAGAIETMAYELG 399 (495)
T ss_pred C--------------------CCchHHHHHHHHHHHH-hHHHHHHHHHHHHHhcCCHH------hcchHHHHHHHHHHHH
Confidence 0 0123344556778899 99988887777777776543 2677888888999999
Q ss_pred HHHHHhhhheee
Q 044630 162 LLITSTIVAYVQ 173 (343)
Q Consensus 162 ~~ig~~~~~~l~ 173 (343)
+.+|+.+.+.+.
T Consensus 400 ~~~G~ai~g~i~ 411 (495)
T PRK14995 400 AGLGIAIFGLLL 411 (495)
T ss_pred HHHHHHHHHHHH
Confidence 999988876553
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-07 Score=94.82 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=101.6
Q ss_pred HHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccc
Q 044630 15 IFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERI 94 (343)
Q Consensus 15 ~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~ 94 (343)
....++.+++|-+ ....++.+.+++...+..++.|.|+|. +|||+.++.+.+++.+...+.+..
T Consensus 65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA-------------- 128 (599)
T PF06609_consen 65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATA-------------- 128 (599)
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcC--------------
Confidence 4446777888876 566688889999999999999999999 599999998874444433333221
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee
Q 044630 95 HGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT 174 (343)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~ 174 (343)
.+...++.+..+.|+ |.|... .....++|..+.+ .|..+..+.....-+...+++.+...+..
T Consensus 129 ---------~~~~~~iag~~l~Gv-gaG~~~-~~~~~isEl~p~k------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~ 191 (599)
T PF06609_consen 129 ---------QNMNTFIAGMVLYGV-GAGVQE-LAALAISELVPNK------WRGLGLAIASIPFIITTWISPLIAQLFAA 191 (599)
T ss_pred ---------CcHHHHHHHHHHHHH-hhHHHH-HHHHHHHHhcccc------hhhhHhHHHHHHHHhhhcccHHHHHHhcc
Confidence 245678889999999 987765 4455688888643 24444443333322333334444444444
Q ss_pred -ccccccchhHHHHHHHHHHHHHh
Q 044630 175 -VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 175 -~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
.+||+.|++.++...++++...+
T Consensus 192 ~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 192 HSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHH
Confidence 79999999998877776655433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-07 Score=89.14 Aligned_cols=164 Identities=9% Similarity=-0.008 Sum_probs=96.4
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHH--HHHHHHHHHHHHHH-HHHHHhccchHHHHHHHH-H-HHHHHHHHHhhc
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKF--GAWNGVADFLTVIF-AFLADAYIGKFVTIVLGF-L-LGMLMVTLTAIV 80 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~--~~~~~~~~~~~l~g-G~laDr~lGr~~~i~~~~-~-~g~~~l~~~~~~ 80 (343)
.+.+.-+...++.|+++ .|++.++.+... +.......+.+++. ++.+|| +||||.+++.. . .+..+..+....
T Consensus 14 g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~~~~~~~~~~~ 91 (390)
T TIGR02718 14 GIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVSACLASLALVG 91 (390)
T ss_pred HhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHHHHHHHHHcCC
Confidence 34444455677778765 599999999863 44444554444444 778888 59999986666 2 222222332121
Q ss_pred CCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH
Q 044630 81 PQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL 160 (343)
Q Consensus 81 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i 160 (343)
+. ......+.....+.++ ......+...++..|..++ +.++.+.+...++..+
T Consensus 92 ~~--------------------~~~~~~~~~~~~~~~~-~~a~~d~~~d~~~~~~~~~------~~~~~~~~~~~~g~~l 144 (390)
T TIGR02718 92 PD--------------------VAGAGWAVGLLACASL-ASATQDIATDGMAAEHFNG------RTLAKGNAVQIAGVMI 144 (390)
T ss_pred cc--------------------hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCH------hhhhHHHHHHHHHHHH
Confidence 10 0112222333333444 4444444444444444322 1245455555667788
Q ss_pred HHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhc
Q 044630 161 VLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAG 198 (343)
Q Consensus 161 G~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~ 198 (343)
|.++|..+.+++.+ .||+..|.+.++..++..+..+..
T Consensus 145 G~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 145 GFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999988888888 999999999888776655554433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.7e-07 Score=87.74 Aligned_cols=136 Identities=11% Similarity=0.092 Sum_probs=97.8
Q ss_pred hhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcC
Q 044630 5 ERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVP 81 (343)
Q Consensus 5 e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~ 81 (343)
..+.++++..+++.|+++ .|++..+++.+.+...++..++.+++|+++||+-+||+++.++. .++.+.+. ..+
T Consensus 209 ~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~---~~~ 284 (355)
T TIGR00896 209 QSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLL---FAP 284 (355)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH---Hhh
Confidence 345678888899999975 79999999999999999999999999999999524565665554 22222221 111
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
. ..... ...+.|+ |.|...|...+...+..+++ ++++..+++.+...++|
T Consensus 285 ~----------------------~~~~~--~~~l~g~-~~g~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~ 334 (355)
T TIGR00896 285 M----------------------HGLWA--WALVLGL-GQGGAFPLALTLIGLRSRQA-----AQAAALSAMAQSIGYLL 334 (355)
T ss_pred h----------------------hHHHH--HHHHHHH-hhhhHhHHHHHHHHHhccCH-----HHHHHHHHHHHHHHHHH
Confidence 0 11111 3456789 99998888777776654432 13567777777788899
Q ss_pred HHHHHhhhheeee
Q 044630 162 LLITSTIVAYVQT 174 (343)
Q Consensus 162 ~~ig~~~~~~l~~ 174 (343)
..++|.+.|++.|
T Consensus 335 ~~~gp~~~G~l~~ 347 (355)
T TIGR00896 335 AALGPLFVGVLHD 347 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999988
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-07 Score=88.38 Aligned_cols=150 Identities=8% Similarity=-0.006 Sum_probs=104.8
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRP 85 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~ 85 (343)
.++.+..+.++.|+. +.|++..+.+...+.......+..++.|++.||+ |+|+.+.++. ..+...+ +....
T Consensus 219 ~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~~-~~~~~----- 290 (382)
T PRK11128 219 GSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRWG-LMGST----- 290 (382)
T ss_pred HHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHH-HHHhh-----
Confidence 445567778888985 5899999999998888888888889999999995 9999988776 2222211 11111
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHH-HHHHHHHHH
Q 044630 86 PHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYY-TTFTLVLLI 164 (343)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y-~~~~iG~~i 164 (343)
.+.+.+++..++.|+ +.+...+....+..++ +++ ++++..+++. ....+|..+
T Consensus 291 ------------------~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~g~~i 344 (382)
T PRK11128 291 ------------------TALPWLIVIQILHCG-TFTVCHLAAMRYIAAR-PGS------EVIRLQALYSALAMGGSIAI 344 (382)
T ss_pred ------------------hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC-CHh------hhHHHHHHHHHHHHHHHHHH
Confidence 134566667777888 8887777777776664 322 2466677665 556778889
Q ss_pred HHhhhheeee-ccccccchhHHHHHHHH
Q 044630 165 TSTIVAYVQT-VSWAWGFTIPTVCLFCG 191 (343)
Q Consensus 165 g~~~~~~l~~-~gw~~~F~i~~~~~~l~ 191 (343)
|+.+.|++.| .|+ ..|.+.+++.+++
T Consensus 345 g~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 345 MTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 9999999999 776 3555555444444
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.7e-07 Score=89.75 Aligned_cols=167 Identities=14% Similarity=0.171 Sum_probs=105.7
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHH--HHHHHHHHHHh
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADA---YIGKFVTIVLGF--LLGMLMVTLTA 78 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr---~lGr~~~i~~~~--~~g~~~l~~~~ 78 (343)
...+.+.-+..++..|+++.+|++.+.++.++.+.-+.-.+.-++.|+++|| .+||||..++.. ..+.....+.
T Consensus 20 ~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf- 98 (460)
T PRK11462 20 ASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAY- 98 (460)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHH-
Confidence 3445556666789999999999999999999999999999999999999997 269987776544 2222221111
Q ss_pred hcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHH
Q 044630 79 IVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTF 158 (343)
Q Consensus 79 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~ 158 (343)
..|... .......+++...+..+ +.-...-...++.++.-++ ++ +|.+..++...+.
T Consensus 99 ~~p~~s-----------------~~~~~~y~~~~~~~~~~-~~t~~~ipy~al~~~lt~d--~~---eRt~l~s~r~~~~ 155 (460)
T PRK11462 99 STPDLS-----------------MNGKMIYAAITYTLLTL-LYTVVNIPYCALGGVITND--PT---QRISLQSWRFVLA 155 (460)
T ss_pred hCCCCC-----------------cchHHHHHHHHHHHHHH-HHHHHhccHHHHHHHhcCC--HH---HHHHHHHHHHHHH
Confidence 113211 01122333333334455 5555556677888887654 33 3778888888888
Q ss_pred HHHHHHHHhhhheeee--------ccccccchhHHHHHHHHHHH
Q 044630 159 TLVLLITSTIVAYVQT--------VSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 159 ~iG~~ig~~~~~~l~~--------~gw~~~F~i~~~~~~l~~~~ 194 (343)
++|.++++.+...+.+ .+|+....+.+++.++...+
T Consensus 156 ~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 156 TAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 8887777655433222 35666555555554444433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.9e-07 Score=87.66 Aligned_cols=149 Identities=14% Similarity=0.160 Sum_probs=95.7
Q ss_pred HHHHHHhhHhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchHHHHHHHHH---HHHHHHHHHhhcCCCCCCCCC
Q 044630 14 AIFTVYLLNEYNVSQAYVAAKFGAWNG-VADFLTVIFAFLADAYIGKFVTIVLGFL---LGMLMVTLTAIVPQLRPPHCT 89 (343)
Q Consensus 14 ~~L~~yl~~~lg~s~~~a~~~~~~~~~-~~~~~~l~gG~laDr~lGr~~~i~~~~~---~g~~~l~~~~~~~~~~~~~c~ 89 (343)
...+.|+.+++|++..+.+.+...... ...++.+++|++.||+ |||+.+.++.. +..+.+...+..+
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~-------- 300 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTP-------- 300 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 344567778899999999988766544 5778899999999994 99998876651 2211121112211
Q ss_pred CccccccccCCCCcchHHHHHHHH----HHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 044630 90 NEERIHGQCIGPNRNQLAFLHVAM----FWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLIT 165 (343)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l----~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig 165 (343)
.+.+.+.... +..++ +.+...+....++.+.++.+ .++++....++|..++
T Consensus 301 --------------~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~ 355 (402)
T PRK11902 301 --------------KHLWTMALAIGIENLCGGM-GTAAFVALLMALCNRSFSAT----------QYALLSALASVGRVYV 355 (402)
T ss_pred --------------CcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCcHH----------HHHHHHHHHHHHHHHH
Confidence 0223333333 23445 55555666666666665432 2344444556777766
Q ss_pred Hhhhheeee-ccccccchhHHHHHHHHHHHHH
Q 044630 166 STIVAYVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 166 ~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
..++|++.| .||+..|.+.+++.++++++.+
T Consensus 356 ~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 356 GPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 778899999 9999999998887777665553
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.6e-07 Score=85.94 Aligned_cols=152 Identities=8% Similarity=0.007 Sum_probs=104.5
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPP 86 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~ 86 (343)
.++++...+++.++.+++|++..+++.....+..+..++.++.|++.||. +|+..+....+.....+.+... +
T Consensus 230 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~~~~l~~~-~----- 302 (394)
T PRK10213 230 AGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVSALVLTLW-G----- 302 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHH-h-----
Confidence 44556666664444567899999999999999999999999999999993 5544333332212211111111 1
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 044630 87 HCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITS 166 (343)
Q Consensus 87 ~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~ 166 (343)
.+.+.+.....+.|+ +.+...+...+++.+..+++ .++..+.++...++|..+|+
T Consensus 303 -----------------~~~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~lg~~~G~ 357 (394)
T PRK10213 303 -----------------SDKIVATGVAIIWGL-TFALVPVGWSTWITRSLADQ-------AEKAGSIQVAVIQLANTCGA 357 (394)
T ss_pred -----------------hhHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHCccc-------HHHHHHHHHHHHHHHHHHHH
Confidence 123455666777888 88888888888888776532 33445566677789999999
Q ss_pred hhhheeee-ccccccchhHHHHHHH
Q 044630 167 TIVAYVQT-VSWAWGFTIPTVCLFC 190 (343)
Q Consensus 167 ~~~~~l~~-~gw~~~F~i~~~~~~l 190 (343)
.+.|++.| .|++..|..++++.++
T Consensus 358 ~l~G~l~~~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 358 AIGGYALDNIGLTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHHHhccChhhHHHHHHHHHHH
Confidence 99999999 8888888877655443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.7e-08 Score=90.74 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=90.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCccccccccCCCC
Q 044630 26 VSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPN 102 (343)
Q Consensus 26 ~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 102 (343)
-+..-+|.+-+.|++...+.++.+|.+|||| |||.++.+++ .+.+.+...+
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S------------------------- 118 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS------------------------- 118 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 3456788888999999999999999999997 9999999887 3333322222
Q ss_pred cchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee
Q 044630 103 RNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT 174 (343)
Q Consensus 103 ~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~ 174 (343)
.+...+.+++++.|+ ..|-. ..+.++++|.+++++ |..+++.+..+..+|.++||.+++|+.+
T Consensus 119 -~~F~afv~aR~l~Gi-~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 -RNFAAFVLARFLGGI-FKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred -HHHHHHHHHHHhhhh-ccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 245567777999998 66544 456799999998753 7888888888999999999999999876
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-07 Score=100.46 Aligned_cols=148 Identities=16% Similarity=0.052 Sum_probs=108.3
Q ss_pred HhhhhhHHHHHHhhHhcCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCC
Q 044630 8 GSFGIMAIFTVYLLNEYNVSQA-YVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRP 85 (343)
Q Consensus 8 ~~yg~~~~L~~yl~~~lg~s~~-~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~ 85 (343)
..+.+..+++.|+.+.+|++.. .++.+.....++..++.+++|+++||+ ++++.+.++. ..+..++.+. ..+
T Consensus 247 ~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~-~~~---- 320 (1146)
T PRK08633 247 ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSLFLLP-TAP---- 320 (1146)
T ss_pred HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHHHHHH-Hhh----
Confidence 3445667788999999999998 999999999999999999999999995 9988887766 2222222211 111
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 044630 86 PHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLIT 165 (343)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig 165 (343)
+.+.+++..++.|+ +.|...+...+++.+..+++ .|+++++++++..++|.+++
T Consensus 321 -------------------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~------~rg~~~~~~~~~~~lg~~~~ 374 (1146)
T PRK08633 321 -------------------SLASVLVLFFLFGF-SAGLFIVPLNALIQFRAPEK------ELGKVLAANNFLQNVGMLLF 374 (1146)
T ss_pred -------------------hHHHHHHHHHHHHH-HHHHhhHHHHHHHhhcCCcc------chhhhhHHHHHHHHHHHHHH
Confidence 34556667778888 88888888889988887754 38899999998888998887
Q ss_pred Hhhhheeee--ccccccchhHHHH
Q 044630 166 STIVAYVQT--VSWAWGFTIPTVC 187 (343)
Q Consensus 166 ~~~~~~l~~--~gw~~~F~i~~~~ 187 (343)
+.+++.+.. .++...|.+.+.+
T Consensus 375 ~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 375 LALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHH
Confidence 777665543 4555555554443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.3e-07 Score=88.22 Aligned_cols=146 Identities=15% Similarity=0.106 Sum_probs=101.0
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQ 82 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~ 82 (343)
..++++.....+.|+++.+|.+....+...........++.++.++++||+ |+|+++.++. .+|.+++. +.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~~~~~~---~~~~ 316 (448)
T PRK09848 241 LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCGYLLFF---WVSV 316 (448)
T ss_pred HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHH---HcCc
Confidence 345556666667788888898776555544444556677889999999995 9999999887 23333222 2121
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCc-chhhhHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTD-KGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~-~~~~~~~~~f~~~y~~~~iG 161 (343)
.+.+.+++.+.+.++ |.+...+...++.+|..|.++- .+++..+.+++.+.+...+|
T Consensus 317 ---------------------~~~~~~~~~~~l~g~-G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg 374 (448)
T PRK09848 317 ---------------------WSLPVALVALAIASI-GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG 374 (448)
T ss_pred ---------------------hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence 134556667778899 9999999999999988764321 12234677888888999999
Q ss_pred HHHHHhhhheeee-ccc
Q 044630 162 LLITSTIVAYVQT-VSW 177 (343)
Q Consensus 162 ~~ig~~~~~~l~~-~gw 177 (343)
..+|+.+.+.+-+ .||
T Consensus 375 ~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 375 QAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 9999888776544 444
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.9e-07 Score=89.00 Aligned_cols=152 Identities=7% Similarity=0.087 Sum_probs=100.8
Q ss_pred hhhHHHHHHhhHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCC
Q 044630 11 GIMAIFTVYLLNEY---NVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPP 86 (343)
Q Consensus 11 g~~~~L~~yl~~~l---g~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~ 86 (343)
.....++.|+.+.+ +.+....+.+.+...+...++.+..|++.|| +|||+.+.++. +.+... .+....+
T Consensus 233 ~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~-~~~~~~~----- 305 (396)
T TIGR00882 233 VFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRI-IGSSFAT----- 305 (396)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHH-HHHHhcC-----
Confidence 33345677887765 5566667777777777888888999999999 59999988876 223221 1211111
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHH-HHHHHHHHHHHH
Q 044630 87 HCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNW-YYTTFTLVLLIT 165 (343)
Q Consensus 87 ~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~-~y~~~~iG~~ig 165 (343)
+.+.+++...+.++ +.+........+..+..+++ .+++.++. +.....+|+.++
T Consensus 306 ------------------~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~------~~at~~~~~~~~~~~lg~~~~ 360 (396)
T TIGR00882 306 ------------------TALEVVILKMLHAF-EVPFLLVGCFKYITSQFDVR------LSATIYLIGFQFAKQLAMIFL 360 (396)
T ss_pred ------------------ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCcc------eEEEeehHHHHHHHHHHHHHH
Confidence 23445556666677 65444333444555555432 24444544 457889999999
Q ss_pred Hhhhheeee-ccccccchhHHHHHHHHHHH
Q 044630 166 STIVAYVQT-VSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 166 ~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~ 194 (343)
+.+.|++.+ .||+..|.+.+++.++..++
T Consensus 361 ~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 361 STLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 999999999 89999999888776665544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.2e-07 Score=88.95 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=110.7
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCC
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQ 82 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~ 82 (343)
++..+++....+.++.|.+..+|.+ ...+....+..+...++.+++++++||+ ||||++..+..+..+...+..+.+.
T Consensus 235 ~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~~ 312 (428)
T PF13347_consen 235 FLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAALGFLLLFFLGP 312 (428)
T ss_pred HHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHHHHHHHHHHHh
Confidence 3455666667778888888888888 4556666778888899999999999995 9999999887222221111111120
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcc-hhhhHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDK-GRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~-~~~~~~~~f~~~y~~~~iG 161 (343)
.+.+.+++...+.|+ |.|...+...++.+|..|.++-+ +++..+..++.+.+...+|
T Consensus 313 ---------------------~~~~~~~i~~~l~gi-~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~ 370 (428)
T PF13347_consen 313 ---------------------GSPWLVLILFILAGI-GYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG 370 (428)
T ss_pred ---------------------hhHHHHHHHHHHhHh-hhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence 246777888889999 99999999999999998754211 2345677888888889999
Q ss_pred HHHHHhhhheeee-cccc
Q 044630 162 LLITSTIVAYVQT-VSWA 178 (343)
Q Consensus 162 ~~ig~~~~~~l~~-~gw~ 178 (343)
..++..+.+.+-+ .||.
T Consensus 371 ~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 371 QGLAGAIVGLLLALVGYD 388 (428)
T ss_pred HHHHHHHHHHHHHHhCcC
Confidence 9999888777655 4443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.3e-08 Score=94.80 Aligned_cols=172 Identities=11% Similarity=0.062 Sum_probs=112.4
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH----hccchHHHHHHHH--HHHHHHHHHHhh
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLAD----AYIGKFVTIVLGF--LLGMLMVTLTAI 79 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laD----r~lGr~~~i~~~~--~~g~~~l~~~~~ 79 (343)
.+.+.-...+++.|+++.+|++...++.+..+..+...+..++.|.++| | +||||-.++.. ..+.. ..+...
T Consensus 14 ~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~-~~llf~ 91 (428)
T PF13347_consen 14 NMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALS-FFLLFS 91 (428)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHH-HHHhhc
Confidence 3444555678899999999999999999999999999999999999999 7 59888777544 22221 111111
Q ss_pred c-CCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHH
Q 044630 80 V-PQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTF 158 (343)
Q Consensus 80 ~-~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~ 158 (343)
. |. + .+.......+.+...+..+ +......+..++++|..++.+ +|.+..++-....
T Consensus 92 ~~p~------~----------~~~~~~~~~~~~~~~l~~~-~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~ 149 (428)
T PF13347_consen 92 PPPA------G----------LSFTAKLVWLFVFYILFDI-AYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFS 149 (428)
T ss_pred cccc------h----------hhhhhHHHHHHHHHHHHHH-hhhhccCchhhcCccccccHh-----hhhhHHHHHHHHH
Confidence 1 10 0 0001123344555556677 888888888899999876543 2566666666666
Q ss_pred HHHHHHHHhhhhe----eee--c--cccccchhHHHHHHHHHHHHHhccce
Q 044630 159 TLVLLITSTIVAY----VQT--V--SWAWGFTIPTVCLFCGLVLLFAGMRI 201 (343)
Q Consensus 159 ~iG~~ig~~~~~~----l~~--~--gw~~~F~i~~~~~~l~~~~~~~~~~~ 201 (343)
++|.++...+.+. +.+ . +|++...+.+++.++..++.....|.
T Consensus 150 ~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 150 MIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 6666544444443 332 1 68888877777766666655554444
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.6e-07 Score=85.91 Aligned_cols=156 Identities=8% Similarity=-0.027 Sum_probs=109.7
Q ss_pred hhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 044630 9 SFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHC 88 (343)
Q Consensus 9 ~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c 88 (343)
+.+....++.|+.+.+|++..+++.+.....++..++.++.+++.||+ ++++.+..+..++...+.+. . +
T Consensus 221 ~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~~-~-~------- 290 (393)
T PRK11195 221 GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILMGLVVLLMA-L-Q------- 290 (393)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHHHHHHHHHH-H-H-------
Confidence 344445566788889999999999999999999999999999999995 88888877764443322221 1 1
Q ss_pred CCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 044630 89 TNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTI 168 (343)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~ 168 (343)
.+.+...+.+++.|+ +.|...+...+...+. ++++ ..+++.++..+...++|..++..+
T Consensus 291 ---------------~~~~~~~~~~~~~G~-~~g~~~~~~~~~~q~~-~~~~----~~~g~~~a~~~~~~~~~~~~~~~~ 349 (393)
T PRK11195 291 ---------------HSLLPAYPLLILIGA-LGGFFVVPMNALLQHR-GHVL----VGAGHSIAVQNFNENLAMLLMLGL 349 (393)
T ss_pred ---------------hHHHHHHHHHHHHHH-hhhhhhhhHHHHHHhh-Cccc----ccchhHHHHHhHHHHHHHHHHHHH
Confidence 123445556667888 8888888788877554 2221 126888888999999999999988
Q ss_pred hheeeeccccccchhHHHHHHHHHHHH
Q 044630 169 VAYVQTVSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 169 ~~~l~~~gw~~~F~i~~~~~~l~~~~~ 195 (343)
.+.+...|-+..+.+.+++.++++.+-
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK11195 350 YSLLVKLGVPVVAVIVGFGLLVALAMA 376 (393)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 886644666666666555554444433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.1e-07 Score=89.77 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=92.9
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHH------------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHH
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAA------------KFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGML 72 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~------------~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~ 72 (343)
.+.|||+..+++.+++ ++|++..+++. ...+...+...+.+++++++|| +|||++++++. ..+..
T Consensus 301 ~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~~~~~ 378 (502)
T TIGR00887 301 DIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFILTVL 378 (502)
T ss_pred HHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHHHHH
Confidence 3567888777788775 57876543211 1122233444577888999999 59999988776 22222
Q ss_pred HHHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHH
Q 044630 73 MVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFN 152 (343)
Q Consensus 73 ~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~ 152 (343)
+..+....... ... ..+........+ +..+..+....+.+|.+|++ .|+++.+
T Consensus 379 ~~~l~~~~~~~-------------------~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~E~~p~~------~R~~~~g 431 (502)
T TIGR00887 379 FFVLGFAYNHL-------------------STH-GFLAIYVLAQFF-ANFGPNATTFIVPGEVFPTR------YRSTAHG 431 (502)
T ss_pred HHHHHHHHHhc-------------------chh-HHHHHHHHHHHH-HhcCCCchhhhhhhccCchh------HHHHHHH
Confidence 21111100000 001 111111112222 22333455667778999865 3899999
Q ss_pred HHHHHHHHHHHHHHhhhheeee-c----------cccccchhHHHHHHHHHH
Q 044630 153 WYYTTFTLVLLITSTIVAYVQT-V----------SWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 153 ~~y~~~~iG~~ig~~~~~~l~~-~----------gw~~~F~i~~~~~~l~~~ 193 (343)
+.+...++|+++++.+.+++.+ . ++...|.+.++..+++.+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 483 (502)
T TIGR00887 432 ISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL 483 (502)
T ss_pred HHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999998876 3 223456665555555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.5e-07 Score=99.38 Aligned_cols=169 Identities=9% Similarity=0.036 Sum_probs=114.5
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhh-cCCC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAI-VPQL 83 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~-~~~~ 83 (343)
.+.+.++.++++.|+.+.+|.+...++.+.+.+.++..++.++.|+++|+. ++++.+..+. +++...+.+... ....
T Consensus 238 ~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (1140)
T PRK06814 238 WLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLFGLDLAFASSSVP 316 (1140)
T ss_pred HHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHHHHHHHhcccccc
Confidence 345567778899999999999999999999999999999999999999985 6655555444 222222211110 0000
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 044630 84 RPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLL 163 (343)
Q Consensus 84 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ 163 (343)
.++.-. ..-.+... ..+.+.++++.++.|+ +.|...+...+++.+..+++. +++.++.+....++|..
T Consensus 317 ~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~~~~~~~~~~ 384 (1140)
T PRK06814 317 AEPAQL----KSILVFLS-KRHGWRILIDLFGLAA-AGGLYIVPLFAALQAWANPAH------RARVIAANNVLNAAFMV 384 (1140)
T ss_pred cccccc----cchhhhhc-ccccHHHHHHHHHHHH-HHHHhHHHHHHHHHhhCCccc------ceeeeHHHHHHHHHHHH
Confidence 000000 00000000 0134556677788899 999888889999999887653 88899999999999999
Q ss_pred HHHhhhheeee--ccccccchhHHHH
Q 044630 164 ITSTIVAYVQT--VSWAWGFTIPTVC 187 (343)
Q Consensus 164 ig~~~~~~l~~--~gw~~~F~i~~~~ 187 (343)
+++.+.+.+.+ .++...|.+.+++
T Consensus 385 ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 385 AGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999888874 5666666655543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.8e-07 Score=86.68 Aligned_cols=156 Identities=21% Similarity=0.245 Sum_probs=119.1
Q ss_pred hhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCC
Q 044630 11 GIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCT 89 (343)
Q Consensus 11 g~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~ 89 (343)
++.+.-..|..+++|++.++...+....+....++++++|+|+|| +|-|+++.++. ++.... +..+.-.
T Consensus 270 til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~~--~~~~~~~------- 339 (438)
T COG2270 270 TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIAA--LYLIFLE------- 339 (438)
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHHH--HHHHHcc-------
Confidence 344445578888999999999999999999999999999999999 59998888877 222221 1111110
Q ss_pred CccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044630 90 NEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIV 169 (343)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~ 169 (343)
.... +++.-.++|+ ..|+..+..=++.++..|+++ -+++|+.|.......+++||.+.
T Consensus 340 --------------~~~~-f~i~gll~g~-s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~lv 397 (438)
T COG2270 340 --------------GELD-FWILGLLVGT-SLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPFLV 397 (438)
T ss_pred --------------ccHH-HHHHHHHHHH-hcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHHHH
Confidence 1122 3333356888 999999999999999998753 57899999999999999999999
Q ss_pred heeee--ccccccchhHHHHHHHHHHHHHhc
Q 044630 170 AYVQT--VSWAWGFTIPTVCLFCGLVLLFAG 198 (343)
Q Consensus 170 ~~l~~--~gw~~~F~i~~~~~~l~~~~~~~~ 198 (343)
+.+.+ .+-|.++..-.+++.+++++++..
T Consensus 398 ~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 398 AVITQITGSSRAGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred HHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence 99888 677888887777777777666543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.5e-07 Score=85.07 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=101.6
Q ss_pred hHHhhhhhHHHHHHhhHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVS-QAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLR 84 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s-~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~ 84 (343)
.+.+++...+++.|+.+.+|++ ..+++...+.......++.++.|+++|| +|+++.+.+......+........+.
T Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 295 (352)
T PF07690_consen 219 FFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGALGLLLLPF-- 295 (352)
T ss_dssp HHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHCCSHH--
T ss_pred HHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3467778899999999999999 8999999999999999999999999999 59877777665111111111111010
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLI 164 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~i 164 (343)
..+....+...++.|+ +.|...+...++..|..|++ .+++..+.+....++|+.+
T Consensus 296 ------------------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~~~~i 350 (352)
T PF07690_consen 296 ------------------SSSPVWLIIALFLIGF-GFGIVFPILFSLIQELVPPE------YRGTAFGLFNSIGSLGGII 350 (352)
T ss_dssp ------------------HCHHHHHHHHHHHHHH-HHHHHCHHHHHHHHCCCHTC------HHHHHHHHHHHHHHHHHHH
T ss_pred ------------------hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHH
Confidence 0134556667788999 99999999999999998654 3899999999999999998
Q ss_pred HH
Q 044630 165 TS 166 (343)
Q Consensus 165 g~ 166 (343)
||
T Consensus 351 gP 352 (352)
T PF07690_consen 351 GP 352 (352)
T ss_dssp HH
T ss_pred CC
Confidence 87
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.8e-07 Score=83.79 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=93.1
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHH-HHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcC
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWN-GVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVP 81 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~-~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~ 81 (343)
+-.++++++.+.++.|+++ +|++..+.+.+.++.. ....++.+++|+++||+ |||+.+.++. ..+..........+
T Consensus 220 ~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~~~~~~~ 297 (356)
T TIGR00901 220 LYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALTNAGFVWLAS 297 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467788899999999987 9999999988887766 45678899999999995 9999988776 22221111111101
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFT 159 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~ 159 (343)
..... + .+..+.+.+....++.++ +.+...+...++..+..|++. +++.++.++...|
T Consensus 298 ~~~~~---------~----~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~ 355 (356)
T TIGR00901 298 NGHHD---------G----ITFPHLLMLFLTITLEAV-TGGLGTVAFVAFLSKLSNPKF------GATQMALLSSLSA 355 (356)
T ss_pred cCccc---------c----cccchHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHHh
Confidence 00000 0 000123556666667788 999999999999999998753 8899988776554
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.2e-06 Score=80.70 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=80.6
Q ss_pred hhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH----HHHHHHHHHhhcCCCC
Q 044630 9 SFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFL----LGMLMVTLTAIVPQLR 84 (343)
Q Consensus 9 ~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~----~g~~~l~~~~~~~~~~ 84 (343)
++......+.|+.+++|++..+++.+.....+...++.+++|+++|| +|||+++.++.. .+..+.. ....+
T Consensus 210 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 284 (377)
T PRK11102 210 MFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIMGIWLVV-SALLD--- 284 (377)
T ss_pred HHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHH-HHHHh---
Confidence 33444445667778899999999999999999999999999999999 599999888762 1222211 11101
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHH-HHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYT-TFTLVLL 163 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~-~~~iG~~ 163 (343)
.+.+.+.++..+.+. +.+...++......|..++ .+++..+.... ...+|+.
T Consensus 285 -------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~g~~ 337 (377)
T PRK11102 285 -------------------LGFWALVVGVAAFVG-CVSMISSNAMAVILDEFPH-------MAGTASSLAGTLRFGIGAI 337 (377)
T ss_pred -------------------hhHHHHHHHHHHHHH-HHHHhhHHHHHHHhccccc-------cchHHHHHHHHHHHHHHHH
Confidence 122333344444444 5555555555666665442 25556555443 2346677
Q ss_pred HHHhhhh
Q 044630 164 ITSTIVA 170 (343)
Q Consensus 164 ig~~~~~ 170 (343)
+++.+.+
T Consensus 338 ~g~~~~~ 344 (377)
T PRK11102 338 VGALLSL 344 (377)
T ss_pred HHHHHHh
Confidence 7666543
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-06 Score=86.63 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcchHHH
Q 044630 32 AAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAF 108 (343)
Q Consensus 32 ~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 108 (343)
+.++++|.++..+++..+|+++||+ |||+++.+.. +++.++..++...+ ....
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~-----------------------~~e~ 118 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP-----------------------SFEM 118 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh-----------------------hHHH
Confidence 5567889999999999999999995 9999998887 33333333332222 4678
Q ss_pred HHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhh-he-eee-ccccccchhHH
Q 044630 109 LHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIV-AY-VQT-VSWAWGFTIPT 185 (343)
Q Consensus 109 l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~-~~-l~~-~gw~~~F~i~~ 185 (343)
+.+++++.|+ ..|......+-|+.|.-|++ .|+..-...-.+.++|.+++..++ .. +.. -.|++.+.+..
T Consensus 119 li~GR~i~Gl-~~gl~~~~~pmyl~E~sP~~------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~ 191 (485)
T KOG0569|consen 119 LILGRLIVGL-ACGLSTGLVPMYLTEISPKN------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPL 191 (485)
T ss_pred HHHHHHHHHH-HhHHHHHHHHHHHhhcChhh------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHH
Confidence 9999999999 99999999999999987654 366655555688888888885543 22 333 67999999888
Q ss_pred HHHHHHHHHHH
Q 044630 186 VCLFCGLVLLF 196 (343)
Q Consensus 186 ~~~~l~~~~~~ 196 (343)
+..++.++...
T Consensus 192 i~~~~~l~~l~ 202 (485)
T KOG0569|consen 192 IPALLQLALLP 202 (485)
T ss_pred HHHHHHHHHHh
Confidence 87666555443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.9e-07 Score=86.64 Aligned_cols=153 Identities=14% Similarity=0.079 Sum_probs=101.9
Q ss_pred hhhhhHHHHHHhhH--hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCC
Q 044630 9 SFGIMAIFTVYLLN--EYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQL 83 (343)
Q Consensus 9 ~yg~~~~L~~yl~~--~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~ 83 (343)
+......++.|+.. +.+.+....+.+...+.........+.|.+.||+ |+|+.+..+. .++...+... .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~---~-- 295 (395)
T PRK10054 222 SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVIGLVGFIFS---G-- 295 (395)
T ss_pred HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHc---c--
Confidence 33344456666653 3455666667777777666666677889999995 9999887776 2222222111 1
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 044630 84 RPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLL 163 (343)
Q Consensus 84 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ 163 (343)
.+.+.+.++..+.++ |.+...|+..+++.+..|++ .++++++.. ....+|..
T Consensus 296 --------------------~~~~~~~~~~~~~~~-g~~~~~p~~~~~~~~~~p~~------~~~~~~~~~-~~~~~G~~ 347 (395)
T PRK10054 296 --------------------NSLLLWGMSAAVFTV-GEIIYAPGEYMLIDHIAPPG------MKASYFSAQ-SLGWLGAA 347 (395)
T ss_pred --------------------hHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHhCCcc------cceehHhHH-HHHHHHHH
Confidence 123445556677888 88887888888888876643 256677653 35668999
Q ss_pred HHHhhhheeee-ccccccchhHHHHHHHHHHHH
Q 044630 164 ITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 164 ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~ 195 (343)
+||.++|++.| .|....|.+.++...++.++.
T Consensus 348 ~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 348 INPLVSGVILTTLPPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred HHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence 99999999999 888888877666555444333
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=85.07 Aligned_cols=151 Identities=12% Similarity=0.101 Sum_probs=95.4
Q ss_pred hhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCC
Q 044630 12 IMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTN 90 (343)
Q Consensus 12 ~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~ 90 (343)
+...+|.|+++..+ ++.+.+.+.+...........+.+++.||.++.++.+..+. ..+...+.+ ...+
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l-~~~~--------- 295 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPI-GMVS--------- 295 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-HHhh---------
Confidence 34567788877655 66777777776666555444444556655457666665554 222222211 1111
Q ss_pred ccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044630 91 EERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVA 170 (343)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~ 170 (343)
+.+.+.+...+.++ |.+...|...+...|..|+++ ++++++++....++|..+||.+.|
T Consensus 296 --------------~~~~~~~~~~l~~~-g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G 354 (400)
T PRK11646 296 --------------NLQQLFTLICLFYI-GSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGG 354 (400)
T ss_pred --------------hHHHHHHHHHHHHH-HHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchH
Confidence 23344445556677 878888888899998887543 888999998999999999999999
Q ss_pred eeee-c---c-ccccchhHHHHHHHHHHH
Q 044630 171 YVQT-V---S-WAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 171 ~l~~-~---g-w~~~F~i~~~~~~l~~~~ 194 (343)
++.| . + ....|.+.+++.++++++
T Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 355 WLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 9887 2 2 234455444444444433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=88.20 Aligned_cols=156 Identities=11% Similarity=0.104 Sum_probs=118.6
Q ss_pred hhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCC
Q 044630 10 FGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHC 88 (343)
Q Consensus 10 yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c 88 (343)
..+...+|.|..+.+|.+...-|.+.+.+.++..++.++.+.+.+| +++++.+..+. ..+..++.+ ++.+
T Consensus 235 ~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~l-al~~------- 305 (524)
T PF05977_consen 235 SAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLL-ALSP------- 305 (524)
T ss_pred hHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHH-hcch-------
Confidence 3455678889999999999999999999999999999999999999 59888887776 334333222 2211
Q ss_pred CCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 044630 89 TNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTI 168 (343)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~ 168 (343)
+.+...+.+++.|+ +.........+..-...|+ +.|++.++.+.+..+.+..+|..+
T Consensus 306 ----------------~~~~~~~~l~l~G~-~~~~~~~~~~t~~Q~~~P~------~~~GRv~si~~~~~~g~~~lGsll 362 (524)
T PF05977_consen 306 ----------------SFWLALIALFLAGA-AWIIANSSLNTLVQLSVPD------WVRGRVFSIYQMVFFGGMPLGSLL 362 (524)
T ss_pred ----------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCH------HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777787 7766666655555444443 259999999999999999999999
Q ss_pred hheeee-ccccccchhHHHHHHHHHHHHHh
Q 044630 169 VAYVQT-VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 169 ~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
.|++.+ .|-+.++.+++++++++.++...
T Consensus 363 ~G~la~~~g~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 363 WGFLADHFGVRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 89999998888877766665543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.2e-06 Score=80.23 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=92.3
Q ss_pred HhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCC
Q 044630 8 GSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLR 84 (343)
Q Consensus 8 ~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~ 84 (343)
.++.....++.|++ +.|++..+++...........++.++++++.||+ |+|+++.... .++.+.+.+....+.
T Consensus 218 ~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 293 (401)
T PRK11043 218 AFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLLSH-- 293 (401)
T ss_pred HHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 44555666777775 4799999999887777788888899999999995 9998765543 222221111111110
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLI 164 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~i 164 (343)
.......++..+.++ +.|...|...+...++.+++ ++++.+++......++.+
T Consensus 294 -------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~g~~~g~~~~~~~~~~~~ 346 (401)
T PRK11043 294 -------------------PSLVPLLIPFCVMAA-ANGAIYPIVVAQALRPFPQA-------TGKAAALQNTLQLGLCFL 346 (401)
T ss_pred -------------------CcHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhCccc-------ChHHHHHHHHHHHHHHHH
Confidence 123344455667788 88888888877777776432 677888887777777778
Q ss_pred HHhhhheeee
Q 044630 165 TSTIVAYVQT 174 (343)
Q Consensus 165 g~~~~~~l~~ 174 (343)
++.+.+.+.+
T Consensus 347 ~~~~~g~l~~ 356 (401)
T PRK11043 347 ASLLVSALIS 356 (401)
T ss_pred HHHHHHHccC
Confidence 8888777765
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.1e-06 Score=78.42 Aligned_cols=152 Identities=16% Similarity=0.148 Sum_probs=100.9
Q ss_pred hhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHHhhcCCCCCCCCCCcccccccc
Q 044630 20 LLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLL-GMLMVTLTAIVPQLRPPHCTNEERIHGQC 98 (343)
Q Consensus 20 l~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~-g~~~l~~~~~~~~~~~~~c~~~~~~~~~~ 98 (343)
+.++.|++..+.+.+...-.+.+.+...+.|.++||+ ||||.-+..+++ +... +...
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~sc--l~k~------------------- 117 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSC--LTKH------------------- 117 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHH--HHHh-------------------
Confidence 3357899999999998888888889999999999995 999998877622 2111 1111
Q ss_pred CCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHH-HHHHHHHHHHHhhhheeee-c-
Q 044630 99 IGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYY-TTFTLVLLITSTIVAYVQT-V- 175 (343)
Q Consensus 99 ~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y-~~~~iG~~ig~~~~~~l~~-~- 175 (343)
..+...+++++++-|+ ++....++.-+....+..+++-+ ++..+..|+.-. +.+.+-++++..+.-++.+ .
T Consensus 118 ----~~~~~~L~~GRvlgGi-aTSLLfS~FEsW~V~Eh~~~g~~-~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~ 191 (354)
T PF05631_consen 118 ----SSNYPVLLLGRVLGGI-ATSLLFSAFESWMVHEHNKRGFP-QEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG 191 (354)
T ss_pred ----ccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC
Confidence 1247889999999999 98888877766665554433211 123455554333 3333444555555555555 3
Q ss_pred -cccccchhHHHHHHHHHHHHHhcc
Q 044630 176 -SWAWGFTIPTVCLFCGLVLLFAGM 199 (343)
Q Consensus 176 -gw~~~F~i~~~~~~l~~~~~~~~~ 199 (343)
|-...|..+.++.+++.++.....
T Consensus 192 ~g~vaPF~~a~~~l~~~~~~I~~~W 216 (354)
T PF05631_consen 192 FGPVAPFDAAIVLLAVAAVLILKTW 216 (354)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhcc
Confidence 347788888888777766554433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.2e-06 Score=83.64 Aligned_cols=149 Identities=9% Similarity=0.005 Sum_probs=102.1
Q ss_pred hhhhhHHHHHHhhHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 044630 9 SFGIMAIFTVYLLNE-YNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPH 87 (343)
Q Consensus 9 ~yg~~~~L~~yl~~~-lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~ 87 (343)
..++.++++.|+.+. .+.+...++...+.+.....++.+++|+++|| +++||.+.++..++.++..+....+
T Consensus 248 e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~~~ll~~~~~------ 320 (410)
T TIGR00885 248 QIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMALCLGSIFAG------ 320 (410)
T ss_pred HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHcC------
Confidence 345567778888653 35666666666777778889999999999999 5999988777644443333332211
Q ss_pred CCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 044630 88 CTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITST 167 (343)
Q Consensus 88 c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~ 167 (343)
... ....+.+.++ ..+.+.|.+.+...+.++++. .+.-....++. +|+.+.|.
T Consensus 321 -----------------~~~-~~~~l~~~gl-f~s~~fp~i~sl~~~~~g~~~-------~~~s~~l~~~~-~Gga~~p~ 373 (410)
T TIGR00885 321 -----------------GHV-GLYCLTLCSA-FMSLMFPTIYGIALKGLGQDT-------KYGAAGLVMAI-IGGGIVPP 373 (410)
T ss_pred -----------------ChH-HHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhh-------hhhHHHHHHHH-hccchHHH
Confidence 112 2355566777 777788999999999887542 12222333343 99999999
Q ss_pred hhheeee-c------cccccchhHHHHHHHH
Q 044630 168 IVAYVQT-V------SWAWGFTIPTVCLFCG 191 (343)
Q Consensus 168 ~~~~l~~-~------gw~~~F~i~~~~~~l~ 191 (343)
+.|++.| . |.+.+|.++.++.+..
T Consensus 374 l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 374 LQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred HHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 9999998 5 5888999888776543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-06 Score=83.87 Aligned_cols=122 Identities=12% Similarity=0.114 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-HHHHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHH
Q 044630 33 AKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGM-LMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHV 111 (343)
Q Consensus 33 ~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~-~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~ 111 (343)
.......+...++.+++++++||+ |||+.+.++..... ..+.+. ..+ ..+.+.+++
T Consensus 268 ~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~-~~~---------------------~~~~~~~~~ 324 (444)
T PRK09669 268 LFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSALIF-FIP---------------------PSNVWLIFA 324 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHH-HhC---------------------cchHHHHHH
Confidence 344445566667888999999995 99999987762211 111111 111 023455667
Q ss_pred HHHHHHHhccCCCccchhhhhhccCCCCCc-chhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-cccc
Q 044630 112 AMFWLAVGGAGGIRPCSIPFAVDQFDSRTD-KGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VSWA 178 (343)
Q Consensus 112 ~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~-~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~gw~ 178 (343)
...+.++ |.+...+...++++|..|.++. .+++..+..++.+.++.++|..+|+.+.+++-+ .||.
T Consensus 325 ~~~i~g~-~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 325 LNILFNF-IQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7778899 9999999999999999874321 233445677888889999999999999888766 6663
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.9e-06 Score=86.39 Aligned_cols=163 Identities=16% Similarity=0.161 Sum_probs=125.7
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHH--HHHHHHHHHHhhc
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGK-FVTIVLGF--LLGMLMVTLTAIV 80 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr-~~~i~~~~--~~g~~~l~~~~~~ 80 (343)
+-.++|+-....++.|.. ..|+++.+++.++++..+...++.++.|+++|+. .. ++.+...+ ..|+..+. .
T Consensus 309 ~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~gl~~~~-~--- 382 (509)
T KOG2504|consen 309 FAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIAGLARLF-L--- 382 (509)
T ss_pred HHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHHHHHHHH-H---
Confidence 445677777788888888 7899999999999999999999999999999995 53 43433333 23332211 1
Q ss_pred CCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH
Q 044630 81 PQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL 160 (343)
Q Consensus 81 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i 160 (343)
|- | ...+.+.....+.|+ ..|.+.+.....+.|..+.++ ..+++++......+
T Consensus 383 p~-----~---------------~~~~~l~~~~~~fG~-~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~~gi 435 (509)
T KOG2504|consen 383 PF-----A---------------TTYVGLIVFSILFGF-CVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLFQGI 435 (509)
T ss_pred HH-----h---------------ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcChhh------cchHHHHHHHHhHH
Confidence 21 0 135566666677888 888888887778888887653 78899999999999
Q ss_pred HHHHHHhhhheeee-c-cccccchhHHHHHHHHHHHHHhcc
Q 044630 161 VLLITSTIVAYVQT-V-SWAWGFTIPTVCLFCGLVLLFAGM 199 (343)
Q Consensus 161 G~~ig~~~~~~l~~-~-gw~~~F~i~~~~~~l~~~~~~~~~ 199 (343)
+.++||.+.|++.| . +|...|..+++.++++....++..
T Consensus 436 ~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 436 GALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999 4 599999999999988876655543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-06 Score=87.34 Aligned_cols=128 Identities=13% Similarity=0.046 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHH
Q 044630 37 AWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFW 115 (343)
Q Consensus 37 ~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l 115 (343)
...+....+.+++++++|| +|||+.+.++. +.+...+.+ .+.+. ...+.......+
T Consensus 363 ~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~-~~~~~---------------------~~~~~~~~~~~~ 419 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLL-LFVPV---------------------DLYFLRTALAVL 419 (505)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH-HHcCC---------------------CchHHHHHHHHH
Confidence 3445566788899999999 59999998887 333332222 22221 011223333344
Q ss_pred HHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeeeccccccchhHHHHHHHHHHHH
Q 044630 116 LAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQTVSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 116 ~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~~gw~~~F~i~~~~~~l~~~~~ 195 (343)
.++ +.++..+...++.+|.+|++ .|+++.++.+....+|++++|.+.+ +.+.++...|.+.+++.+++.+..
T Consensus 420 ~~~-~~~~~~~~~~~~~~e~~p~~------~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
T TIGR00898 420 GKF-GITSAFQMVYLYTAELYPTV------VRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILT 491 (505)
T ss_pred HHH-HHHHHHHHHHHHhcccccHH------HHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 445 66666677888999999754 3888999999999999999999888 544566667776666555554433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.6e-06 Score=77.98 Aligned_cols=149 Identities=15% Similarity=0.220 Sum_probs=108.2
Q ss_pred hhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcC
Q 044630 5 ERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVP 81 (343)
Q Consensus 5 e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~ 81 (343)
.++.||.+..+||.++.+ -|+|..+++..++..+.......+.+-++++|.-.+|+...... .+|.+.+.+. |
T Consensus 220 qS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~---P 295 (395)
T COG2807 220 QSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA---P 295 (395)
T ss_pred hHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh---h
Confidence 568899999999999986 59999999999999999999999999999998656666665554 5555544432 3
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
. +.+.+. .+++|+ |.|+..|....++.+-.++ +++. ++--++-.-...+=
T Consensus 296 ~----------------------~~~~lw--~~llG~-G~G~~F~laL~li~~rs~~--a~~A---a~LSgmaQg~GYll 345 (395)
T COG2807 296 G----------------------QLPILW--ALLLGL-GQGGAFPLALTLILLRSSD--AAIA---AALSGMAQGVGYLL 345 (395)
T ss_pred h----------------------hHHHHH--HHHHhC-ccchHHHHHHHHHHhhcCC--hHHH---HHHHHHhhhhhHHH
Confidence 1 222232 478899 9999999999999887654 3332 22222222333444
Q ss_pred HHHHHhhhheeee--ccccccchhHHHH
Q 044630 162 LLITSTIVAYVQT--VSWAWGFTIPTVC 187 (343)
Q Consensus 162 ~~ig~~~~~~l~~--~gw~~~F~i~~~~ 187 (343)
+.+||.+.|++.| .||+.....-+.+
T Consensus 346 Aa~GP~l~G~lhDa~gsw~~~~~~l~~~ 373 (395)
T COG2807 346 AAFGPWLFGFLHDATGSWSAPLVLLALA 373 (395)
T ss_pred HhhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence 6678999999999 8898776554443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.1e-09 Score=102.76 Aligned_cols=132 Identities=18% Similarity=0.273 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcch
Q 044630 29 AYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQ 105 (343)
Q Consensus 29 ~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 105 (343)
...+...+...++..++.+++|+++||+ |||+++.++. .+|.++..++ +. ..+
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~---~~--------------------~~~ 101 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFA---PS--------------------YNN 101 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccc---cc--------------------ccc
Confidence 3567788889999999999999999995 9999999887 3333322221 20 014
Q ss_pred HHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee----ccccccc
Q 044630 106 LAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT----VSWAWGF 181 (343)
Q Consensus 106 ~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~----~gw~~~F 181 (343)
.+.+.+++++.|+ |.|+..+....++.|..+++ .|+....+...+..+|.+++..+.-.+.+ .+||..+
T Consensus 102 ~~~~~~~R~~~G~-~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 102 FWMLLIGRFLIGF-GIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccc-cccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc
Confidence 5778899999999 99999999999999987654 27777777777888888887766544433 3599999
Q ss_pred hhHHHHHHHH
Q 044630 182 TIPTVCLFCG 191 (343)
Q Consensus 182 ~i~~~~~~l~ 191 (343)
.++++..++.
T Consensus 175 ~~~~~~~l~~ 184 (451)
T PF00083_consen 175 IFGAIPSLLV 184 (451)
T ss_pred cccccccccc
Confidence 8877765443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.5e-06 Score=82.70 Aligned_cols=168 Identities=12% Similarity=0.038 Sum_probs=110.7
Q ss_pred chhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------hHHHHHHHHHHHHH-H
Q 044630 2 ETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIG-------KFVTIVLGFLLGML-M 73 (343)
Q Consensus 2 e~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lG-------r~~~i~~~~~~g~~-~ 73 (343)
.+++.++++-+..++|.|+.+.+|++..+.|...++=.+.+.+..+++|.+|||... +||..-.....+.. .
T Consensus 267 ~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~ 346 (466)
T KOG2532|consen 267 AFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVF 346 (466)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999633 22222222222211 1
Q ss_pred HHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHH
Q 044630 74 VTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNW 153 (343)
Q Consensus 74 l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~ 153 (343)
+...++.+. + .. ......+.++..+.|+ ..+|+.-| ..+. .| +.-+..+++
T Consensus 347 l~~l~~~~~------~----------~~-~~a~~~l~~~~~~~g~-~~~Gf~~~-------~~~~-ap---q~a~~l~g~ 397 (466)
T KOG2532|consen 347 LLVLAFTSD------E----------HR-LLAVILLTIAIGLSGF-NISGFYKN-------HQDI-AP---QHAGFVMGI 397 (466)
T ss_pred HHeeeecCC------C----------cc-hHHHHHHHHHHHHccc-chhhhHhh-------hhhc-cc---hHHHHHHHH
Confidence 111222110 0 00 0112222222333333 33332221 1110 01 236777888
Q ss_pred HHHHHHHHHHHHHhhhheeee----ccccccchhHHHHHHHHHHHHHhc
Q 044630 154 YYTTFTLVLLITSTIVAYVQT----VSWAWGFTIPTVCLFCGLVLLFAG 198 (343)
Q Consensus 154 ~y~~~~iG~~ig~~~~~~l~~----~gw~~~F~i~~~~~~l~~~~~~~~ 198 (343)
..+..++.++++|.+++++.. ..|+..|.+.+++++++.++|.+.
T Consensus 398 ~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 398 INFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 888999999999999999873 589999999999999888777653
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.7e-06 Score=84.51 Aligned_cols=146 Identities=9% Similarity=0.055 Sum_probs=94.3
Q ss_pred HhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH---HHHHHHHHhhcCCCC
Q 044630 8 GSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLL---GMLMVTLTAIVPQLR 84 (343)
Q Consensus 8 ~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~---g~~~l~~~~~~~~~~ 84 (343)
+++...+..+.|.+..++ +....+.+.....+...++.++.++++|| +|||+++.++..+ +.+.+......+
T Consensus 246 ~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~~~~--- 320 (473)
T PRK10429 246 ASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVLSCGVLLLMGLAA--- 320 (473)
T ss_pred HHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhccC---
Confidence 333333444434443344 44455556566667778888999999999 5999999877622 322222111111
Q ss_pred CCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCC-cchhhhHHHHHHHHHHHHHHHHH
Q 044630 85 PPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRT-DKGRKEINSFFNWYYTTFTLVLL 163 (343)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~-~~~~~~~~~~f~~~y~~~~iG~~ 163 (343)
..+.+.+++...+.++ |.+...+...++++|..|.++ +.+++..+.+++...+...+|..
T Consensus 321 ------------------~~~~~~~~i~~~l~g~-~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~a 381 (473)
T PRK10429 321 ------------------PHNALLIVIAGILLNI-GTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSA 381 (473)
T ss_pred ------------------chhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHH
Confidence 0134555666677788 888888888999999977431 22334456688888888999999
Q ss_pred HHHhhhheeee-ccc
Q 044630 164 ITSTIVAYVQT-VSW 177 (343)
Q Consensus 164 ig~~~~~~l~~-~gw 177 (343)
+|+.+.|++-+ .||
T Consensus 382 l~~~i~g~~l~~~Gy 396 (473)
T PRK10429 382 FAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHcCC
Confidence 99988887765 555
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.3e-06 Score=78.90 Aligned_cols=156 Identities=8% Similarity=-0.128 Sum_probs=95.3
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH---HHHHH-HHHHHHHHHHHHh
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF---VTIVL-GFLLGMLMVTLTA 78 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~---~~i~~-~~~~g~~~l~~~~ 78 (343)
++-..++|++.+++|.|+++ .|++.. ++........ .+.+..++++||. .|| +.... ...+..+.+....
T Consensus 202 ~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~---~g~~g~~~~~d~~-~r~~~r~~~~~~~~~~~a~~~~~~~ 275 (368)
T TIGR00903 202 GFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAIL---AGLIGVAVIPDRV-ARAGLRSIYIRAAALLIAAFFLALA 275 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHH---HHHHHHHHhhHHh-hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999965 678864 4444333333 3334468999985 543 33222 2211111111111
Q ss_pred hcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHH
Q 044630 79 IVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTF 158 (343)
Q Consensus 79 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~ 158 (343)
... +.......+.+.++ +.+...+...++.+|.+|++ .|+++.++.+...
T Consensus 276 ~~~-----------------------~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~------~rgt~~G~~~~~g 325 (368)
T TIGR00903 276 FEL-----------------------NRLALFAFIGIAGL-LMLPAYAIIMDWIGKFCDKE------LHGKAAGAIGFTS 325 (368)
T ss_pred Hcc-----------------------ccHHHHHHHHHHHH-hhhhhHHHHHHHHHHhcchh------hcCcccchhhHHH
Confidence 100 11222333444556 66666677888999999865 3899999999999
Q ss_pred HHHHHHHHhhhheeeeccccccchhHHHHHHHHHHHH
Q 044630 159 TLVLLITSTIVAYVQTVSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 159 ~iG~~ig~~~~~~l~~~gw~~~F~i~~~~~~l~~~~~ 195 (343)
++|+.++|.+.+.+.. |.+..|.+.++..+++.+..
T Consensus 326 ~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 326 RAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHH
Confidence 9999999988876653 55556666666555554443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.7e-06 Score=76.72 Aligned_cols=150 Identities=12% Similarity=0.113 Sum_probs=120.2
Q ss_pred HHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccc
Q 044630 16 FTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIH 95 (343)
Q Consensus 16 L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~ 95 (343)
+..=+.+++|+|.+.++.+.+.=..+..+.+++..+|+-| +|-.|++..+.++..+...+- +.
T Consensus 34 LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR----~~------------ 96 (395)
T COG2807 34 LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIR----SL------------ 96 (395)
T ss_pred hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHH----hc------------
Confidence 3445667899999999999999999999999999999999 599999998872211111111 10
Q ss_pred cccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-
Q 044630 96 GQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT- 174 (343)
Q Consensus 96 ~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~- 174 (343)
.+...++.+-.+.|. |.+......++.+-+.|+++ .+...+.|..+.++|+.+++.+...+.+
T Consensus 97 --------~~~~~L~~gt~l~G~-gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~ 160 (395)
T COG2807 97 --------GGLPLLFLGTLLAGA-GIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQH 160 (395)
T ss_pred --------ccHHHHHHHHHHHHh-hHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHh
Confidence 135678888889999 99998889999999988753 5677788889999999999999888888
Q ss_pred -ccccccchhHHHHHHHHHHHHHhc
Q 044630 175 -VSWAWGFTIPTVCLFCGLVLLFAG 198 (343)
Q Consensus 175 -~gw~~~F~i~~~~~~l~~~~~~~~ 198 (343)
.||+.+..+-+...++++++.+-.
T Consensus 161 ~~gW~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 161 SGGWRGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhh
Confidence 589999998888888787776654
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.8e-06 Score=85.06 Aligned_cols=154 Identities=14% Similarity=0.070 Sum_probs=115.3
Q ss_pred HHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccc
Q 044630 15 IFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERI 94 (343)
Q Consensus 15 ~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~ 94 (343)
.+-..+.++++-+..+++++.++..++.++..++.+.+.||+ |.|.+++.|.++..+.+.++++..
T Consensus 67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g~~lssF~~------------- 132 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALGLLLSSFAT------------- 132 (509)
T ss_pred hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 344566678999999999999999999999999999999995 999999999844444444555422
Q ss_pred ccccCCCCcchHHHHHHHHH-HHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 95 HGQCIGPNRNQLAFLHVAMF-WLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~-l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
+.+.+++... +.|+ |.|.........++..|++ +|+.+.++-..+..+|.++=|.+.-++.
T Consensus 133 ----------~i~~l~lt~gvi~G~-G~~~~~~paiviv~~YF~k-------kR~lA~Gia~~GsG~G~~~~~~l~~~l~ 194 (509)
T KOG2504|consen 133 ----------SLWQLYLTFGVIGGL-GLGLIYLPAVVILGTYFEK-------KRALATGIAVSGTGVGTVVFPPLLKYLL 194 (509)
T ss_pred ----------hHHHHHHHHHHHhhc-cchhhhcchhhhhhhHhHH-------HHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence 3556665544 5678 9999998888888877753 3677767666677777777677777777
Q ss_pred e-ccccccchhHHHHHHHHHHHHHhccc
Q 044630 174 T-VSWAWGFTIPTVCLFCGLVLLFAGMR 200 (343)
Q Consensus 174 ~-~gw~~~F~i~~~~~~l~~~~~~~~~~ 200 (343)
+ +|||..+.+-+.+++-.++.-...+|
T Consensus 195 ~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 195 SKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7 99999999877776544444444444
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.9e-05 Score=74.79 Aligned_cols=53 Identities=13% Similarity=0.101 Sum_probs=45.9
Q ss_pred HHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 044630 14 AIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF 67 (343)
Q Consensus 14 ~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~ 67 (343)
...+.|+.+++|++..+.+...........++.++.|++.||+ |||+.+.++.
T Consensus 224 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~ 276 (392)
T PRK10473 224 NTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQ 276 (392)
T ss_pred HhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 3445677788999999999888888889999999999999995 9999988876
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.6e-06 Score=80.72 Aligned_cols=139 Identities=15% Similarity=0.181 Sum_probs=93.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcc
Q 044630 25 NVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRN 104 (343)
Q Consensus 25 g~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 104 (343)
|++....+.+..+-.++..+++++.||++|++ |||+++...+++-.+.-.+++. |. |.++...
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~-s~---------------~~~~~~~ 142 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGL-SV---------------GTTSPLG 142 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhcc-CC---------------CCCCCcc
Confidence 36777888888888999999999999999995 9999988776222221112222 21 1111123
Q ss_pred hHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHH----HHHHHHHHHHHhhhheeee------
Q 044630 105 QLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYY----TTFTLVLLITSTIVAYVQT------ 174 (343)
Q Consensus 105 ~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y----~~~~iG~~ig~~~~~~l~~------ 174 (343)
-.+.+..-|+++|+ |.|+=.|...+...|.-.++ +|+...++.. +++-.|++++.++..-...
T Consensus 143 ~m~~L~~~R~~LGi-GIGGDYPlSAtI~SE~an~~------~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~ 215 (538)
T KOG0252|consen 143 VMMTLCFFRFLLGI-GIGGDYPLSATIMSESANKK------TRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPS 215 (538)
T ss_pred hhhHHHHHHHHhhc-cccCCCcchHHHhhhhhhhc------cccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCC
Confidence 46778889999999 99999999888777764322 3666666654 4445555555555443332
Q ss_pred ------ccccccchhHHHH
Q 044630 175 ------VSWAWGFTIPTVC 187 (343)
Q Consensus 175 ------~gw~~~F~i~~~~ 187 (343)
.=||..|++.++.
T Consensus 216 ~~~~ld~vWRl~~glg~vp 234 (538)
T KOG0252|consen 216 TYPHLDGVWRIIFGLGAVP 234 (538)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 3499988877665
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=4e-05 Score=73.87 Aligned_cols=130 Identities=14% Similarity=-0.013 Sum_probs=87.5
Q ss_pred HHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCccc
Q 044630 15 IFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTNEER 93 (343)
Q Consensus 15 ~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~~~~ 93 (343)
..+.|+++.+|++..+.+........+..++.++.+++.||+ ||+....... .++.+.+.......
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------ 295 (394)
T PRK11652 229 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQSVICCLLAGLLMWIPGWFG------------ 295 (394)
T ss_pred hChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 345677777999999988887777777777778888888884 6433332222 33322222221100
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 94 IHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
..+.+.+..+..+.++ |.|...|...++..|.++++ ++...+.+....++|+.+++.+.+++.
T Consensus 296 ---------~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 296 ---------VMNVWTLLVPAALFFF-GAGMLFPLATSGAMEPFPYL-------AGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred ---------cccHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0123455666777888 88888899888888877532 566777787788999999999988876
Q ss_pred e
Q 044630 174 T 174 (343)
Q Consensus 174 ~ 174 (343)
+
T Consensus 359 ~ 359 (394)
T PRK11652 359 Q 359 (394)
T ss_pred C
Confidence 6
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-05 Score=76.42 Aligned_cols=144 Identities=13% Similarity=0.170 Sum_probs=95.9
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHhhc-C
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAY---IGKFVTIVLGFLLGMLMVTLTAIV-P 81 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~---lGr~~~i~~~~~~g~~~l~~~~~~-~ 81 (343)
.+.+--+..+|..|.|+..|++.+.+|.+..+.-+.-.+.-++.|.+.||. +||||-.++...+-..+++...+. |
T Consensus 25 ~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p 104 (467)
T COG2211 25 NFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITP 104 (467)
T ss_pred HHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCC
Confidence 445556778899999999999999999999999999999999999999974 588877665542222222222221 2
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
... .+......++--.+.++ +.-.+.-...++.++.-++ |+| |.+..+|-.++.++|
T Consensus 105 ~~~-----------------~~~k~~ya~vtY~l~~l-~YT~vniPy~al~~~iT~d--~~E---R~~l~s~R~~~~~~g 161 (467)
T COG2211 105 DFS-----------------MTGKLIYALVTYMLLGL-GYTLVNIPYGALGPEITQD--PQE---RASLTSWRMVFASLG 161 (467)
T ss_pred Ccc-----------------cCcchHHHHHHHHHHHH-HHHheeCchhhcchhhcCC--HHH---HHHHHHHHHHHHHHH
Confidence 110 01223333344445566 6666666666777777543 444 777778888888888
Q ss_pred HHHHHhhhhee
Q 044630 162 LLITSTIVAYV 172 (343)
Q Consensus 162 ~~ig~~~~~~l 172 (343)
.++...+.+.+
T Consensus 162 ~~l~~~~~~pl 172 (467)
T COG2211 162 GLLVAVLFPPL 172 (467)
T ss_pred HHHHHHHHHHH
Confidence 77766655444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=76.46 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=84.9
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQL 83 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~ 83 (343)
..++++..+++.|+++.+|++..+++.....+.+...++.+++|+++||+ |||+.+..+. ..+..++.+. ..
T Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~---~~- 313 (366)
T TIGR00886 239 GSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGAFLVVLG---LV- 313 (366)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHHHHHHhc---CC-
Confidence 34567788899999999999999999988889889999999999999995 9988777665 2222221111 10
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 84 RPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 84 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
+..+...+...+.+.++ +.|...+...+..++..++ .+++..+++....++|
T Consensus 314 ------------------~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 314 ------------------SPLSLAVFIVLFVALFF-FSGAGNGSTFALVPHIFRR-------ATGAVSGLVGAIGNLG 365 (366)
T ss_pred ------------------CcchHHHHHHHHHHHHH-Hhccccchhhhcchhhchh-------hcccHHHHHHHhccCC
Confidence 00023444444555555 6666666677777777652 2677777777666665
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.4e-06 Score=78.72 Aligned_cols=161 Identities=14% Similarity=0.133 Sum_probs=90.7
Q ss_pred hhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHH--HHHHHHhhcCCCCCCC
Q 044630 11 GIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGM--LMVTLTAIVPQLRPPH 87 (343)
Q Consensus 11 g~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~--~~l~~~~~~~~~~~~~ 87 (343)
...++++.+|+++.|++.++.|.++++......+..++.|.++|| +|.||-+++.. .+.. ..+.+..+.|.+
T Consensus 25 i~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l~~pff~~v~~pll---- 99 (412)
T PF01306_consen 25 IFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLLFGPFFIYVFGPLL---- 99 (412)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHTCHHHHHHTHHHHH----
T ss_pred HHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 445778899999999999999999999999999999999999999 59777665543 1111 001111111211
Q ss_pred CCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 044630 88 CTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITST 167 (343)
Q Consensus 88 c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~ 167 (343)
..-++++..+.++ ..|.......+.. |.+.++ -+++.+-=|+---+...+|-+++..
T Consensus 100 ------------------~~n~~lg~iig~i-~l~~~f~~~~~~~-Ea~~er---~sr~~~feYG~~R~wGSig~ai~s~ 156 (412)
T PF01306_consen 100 ------------------QSNFWLGAIIGGI-YLGLVFNAGVPLS-EAYAER---VSRRNGFEYGRARMWGSIGFAIASL 156 (412)
T ss_dssp ------------------HTT-HHHHHHTTT-TTTTTTTTHHHHH-HHHHHH---HHHHHSS-HHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHH-HHHHHHcccchHH-HHHHHH---HHHHhcCCcchHHHHhhHHHHHHHH
Confidence 0112334434344 4444444433322 555421 1111222233344667888888888
Q ss_pred hhheeeeccccccchhHHHHHHHHHHHHHhcc
Q 044630 168 IVAYVQTVSWAWGFTIPTVCLFCGLVLLFAGM 199 (343)
Q Consensus 168 ~~~~l~~~gw~~~F~i~~~~~~l~~~~~~~~~ 199 (343)
++|++-+.+-+..|+++.+..++.+++.+..+
T Consensus 157 ~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~ 188 (412)
T PF01306_consen 157 LAGILFNINPNIIFWIASAAAIILLLLLLLLK 188 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred HhheeeeeCccHHHHHHHHHHHHHHHHHHHcC
Confidence 88887664446778776655444444444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00011 Score=71.66 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=67.7
Q ss_pred hhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 044630 12 IMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNE 91 (343)
Q Consensus 12 ~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~ 91 (343)
..+++++|+.+ .|+|..+.|.+.++......+.++++|+++||+..++|.+.+..+++.+.+.......
T Consensus 21 ~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~---------- 89 (400)
T PF03825_consen 21 FLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS---------- 89 (400)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 34667788876 6899999999999999999999999999999975567777665544444333322111
Q ss_pred cccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCC
Q 044630 92 ERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFD 137 (343)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~ 137 (343)
+.+.++..+.+..+ ......|...++.-+..+
T Consensus 90 -------------~f~~~~~~~~l~~~-~~~p~~pl~dsi~~~~~~ 121 (400)
T PF03825_consen 90 -------------SFWWLFVIMLLFSF-FFSPTMPLSDSIALSYLG 121 (400)
T ss_pred -------------cHHHHHHHHHHHHH-HHccHHHHHHHHHHHHcc
Confidence 23444444555566 555555655565555544
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00018 Score=70.87 Aligned_cols=154 Identities=14% Similarity=0.212 Sum_probs=104.7
Q ss_pred HHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cc--hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 044630 16 FTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAY--IG--KFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNE 91 (343)
Q Consensus 16 L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~--lG--r~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~ 91 (343)
...|+.+++|++.++.....+. ...-...-++.|.++|.+ .| ||.-++++.+++.+.....+..|...
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~-~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~------- 83 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSL-ASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE------- 83 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH-HhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc-------
Confidence 4468888999999988775444 344556778899999996 24 44445555555533222222223210
Q ss_pred cccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhe
Q 044630 92 ERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAY 171 (343)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~ 171 (343)
.+.....+.+++..+ |.....-..-++..|.-..+ |++ ++..-++.+....+|++++..+.|+
T Consensus 84 ------------~s~~~~~~~l~la~~-g~a~~DV~aDa~vvE~~~~~-p~~---~g~lqS~~~~~~~~G~lv~~~l~G~ 146 (433)
T PF03092_consen 84 ------------SSAAIAVVLLFLASF-GYAFADVAADALVVELARRE-PES---RGDLQSFVWGVRSVGSLVGSLLSGP 146 (433)
T ss_pred ------------chhhhHHHHHHHHHH-HHHHHHHhhhHHHHHHhhcC-Cch---hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 123334445566677 88888888888888876544 332 6777788889999999999999999
Q ss_pred eee-ccccccchhHHHHHHHHHHH
Q 044630 172 VQT-VSWAWGFTIPTVCLFCGLVL 194 (343)
Q Consensus 172 l~~-~gw~~~F~i~~~~~~l~~~~ 194 (343)
+.+ .+++..|.+.+++.++.++.
T Consensus 147 l~~~~~~~~~f~i~~~~~~l~~~~ 170 (433)
T PF03092_consen 147 LLDSFGPQGVFLISAALPLLMLIV 170 (433)
T ss_pred hhhcCCCeEEehHHHHHHHHHHHH
Confidence 888 89999999888766555443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00018 Score=74.19 Aligned_cols=258 Identities=9% Similarity=-0.092 Sum_probs=169.4
Q ss_pred HHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccc
Q 044630 16 FTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIH 95 (343)
Q Consensus 16 L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~ 95 (343)
..++..--.+...........++....++.++.+...+|-..|+........ ++.++..+...+..+..
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl-~~~ii~~lG~~llai~a---------- 75 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTIL-YLSIVYVVGHALLSFGA---------- 75 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHhcc----------
Confidence 3444444455556677888999999999999999999999877766665544 44433333221111100
Q ss_pred cccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-
Q 044630 96 GQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT- 174 (343)
Q Consensus 96 ~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~- 174 (343)
.+.........+.++.+++ +.+|.+++.+.+.+++.+.. +.+++.+.+++|++..+.+.+ |.+++..+..
T Consensus 76 ----~~~~~~~~~~~~~l~gLaL-ia~G~GgiKp~vsaf~gdqf---~~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~ 146 (654)
T TIGR00926 76 ----IPSSGHPLHDLLDLLGLAL-IALGTGGIKPCVSAFGGDQF---EERQLSLRSRFFSFFYFAINA-GSLISTIITPI 146 (654)
T ss_pred ----CcccccchHHHHHHHHHHH-HHhhccccccCchhhhHhhc---CccchhHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 0112223445567788999 99999999999999998754 355677899999999998886 4555555544
Q ss_pred ccccc-------cc-hhHHHHHHHHHHHHHhccceEEEecCCCCchhHHHHHHHHHHHhhcccccCCCCcccccCCcccc
Q 044630 175 VSWAW-------GF-TIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVGDGIFYVPPLKKT 246 (343)
Q Consensus 175 ~gw~~-------~F-~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 246 (343)
..=.. +| +..++.+++.++.++.+...+++.++.+++...+.+++....+.++.+
T Consensus 147 l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~----------------- 209 (654)
T TIGR00926 147 LRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR----------------- 209 (654)
T ss_pred HHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh-----------------
Confidence 32232 12 356677777788888888888877777666555666655444432210
Q ss_pred cCCcCCCCchhhhhhhhhhhccCcccccccCCCCCCCcc--ccchhHHHHHHHHhHHHHHHHHHHHHHhhcchh-HHHHH
Q 044630 247 LGSKLPLTSSQFRFLNKAAIIDNNDEIKQDGICMNPRRL--CSIQQVEEVNWLMIIVPIWASAIISFLPMQIGT-FVVGQ 323 (343)
Q Consensus 247 ~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~--~~~~~ve~~k~~~~~l~l~~~~i~f~~~~Q~~t-~~~~q 323 (343)
. .. .+... ...|-. +.+.+++++|.+.|+++++...+++|+.+-... .+..|
T Consensus 210 ----~----~~---~~~~~--------------~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~ 264 (654)
T TIGR00926 210 ----F----ST---RSEHW--------------PLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRW 264 (654)
T ss_pred ----h----cc---CCccc--------------chhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 0 00 00000 011211 144457789999999999999999998888887 88888
Q ss_pred HHhcccCCCCCeE
Q 044630 324 AMRMDRHLGPKFE 336 (343)
Q Consensus 324 a~~md~~~~~~f~ 336 (343)
..++|+..+ .+.
T Consensus 265 ~~qa~~m~~-~l~ 276 (654)
T TIGR00926 265 TLQATRMDG-DVG 276 (654)
T ss_pred HHHHHHhcC-ccC
Confidence 889998765 543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.5e-05 Score=70.02 Aligned_cols=123 Identities=11% Similarity=0.098 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHH
Q 044630 38 WNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWL 116 (343)
Q Consensus 38 ~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~ 116 (343)
.+..-+=+.++.+++-|| +|||++|.... +.+..++.+.. |..+ +....+++.+++.+
T Consensus 390 tslaefPGlLIt~~iver-lGRKkTMal~l~~f~iflfll~~-------------------c~~r-n~~tvllf~arafi 448 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVER-LGRKKTMALSLILFGIFLFLLTT-------------------CKTR-NAYTVLLFTARAFI 448 (528)
T ss_pred HHHhhCCchhHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHH-------------------hcCc-chhHHHHHHHHHHH
Confidence 344455677889999999 69999999988 55555444331 2221 12345566677665
Q ss_pred HHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeeeccccccchhHHHHHHHHHH
Q 044630 117 AVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQTVSWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 117 ~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~~gw~~~F~i~~~~~~l~~~ 193 (343)
.. + ..+.+.|..|.||.. .|+.+.+.-..+..+|+++.|.+. ...+.+-...-.+...+.+++.+
T Consensus 449 sg-~----fqvaYvYtPEVyPTa------vRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagI 513 (528)
T KOG0253|consen 449 SG-A----FQVAYVYTPEVYPTA------VRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGI 513 (528)
T ss_pred hc-h----heEEEEecCcccchh------hhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHH
Confidence 54 3 456678888999864 488888888888899999999887 22222333344444444444443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0001 Score=69.80 Aligned_cols=159 Identities=14% Similarity=0.190 Sum_probs=100.7
Q ss_pred hHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCC
Q 044630 21 LNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIG 100 (343)
Q Consensus 21 ~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~ 100 (343)
....|++..++..+......+..+++-.+|.++|+ +||||...+........-.++...|
T Consensus 105 ~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~sp------------------- 164 (528)
T KOG0253|consen 105 DEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGASP------------------- 164 (528)
T ss_pred HhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCCC-------------------
Confidence 34678899999999888999999999999999999 5999998877622222222333322
Q ss_pred CCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-ccccc
Q 044630 101 PNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VSWAW 179 (343)
Q Consensus 101 ~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~gw~~ 179 (343)
+...+++-++++++ |.|+ .|...+.-.+..+..+ + ..-.... ....+|.++...+.=.+.. .|||+
T Consensus 165 ----nf~~L~~f~~l~~~-g~gg-~pv~~~~yle~lp~~~-r---~~~~V~~---~~waig~v~ea~law~vm~~~gwr~ 231 (528)
T KOG0253|consen 165 ----NFASLCVFRALWGF-GVGG-LPVDSAIYLEFLPSSH-R---WLLTVMS---FFWAIGQVFEALLAWGVMSNFGWRY 231 (528)
T ss_pred ----CeehhhHHHHHHhc-cCCC-ccHhHHHHHHhccCcC-C---CcchhHH---HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45567778899999 9999 8888888888777542 1 1122221 3335566555444322233 78987
Q ss_pred cchhHHHH-HHHHHHHHHh-ccceEEEecCCCCchhH
Q 044630 180 GFTIPTVC-LFCGLVLLFA-GMRIYVLVIAEGSLFSS 214 (343)
Q Consensus 180 ~F~i~~~~-~~l~~~~~~~-~~~~~~~~~p~~~~l~~ 214 (343)
-.....+. ++.+...++. -.++| ...+|++-+.
T Consensus 232 ~l~~~~~pl~~~a~f~~w~~ESpRf--~~~~G~~~kA 266 (528)
T KOG0253|consen 232 LLFTSSTPLMFAARFLVWVYESPRF--YLAKGDDYKA 266 (528)
T ss_pred HHHHHHhHHHHHHHHHhhcccCcch--hhhcCChHHH
Confidence 76655553 3334333433 23444 2346666544
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00014 Score=72.23 Aligned_cols=141 Identities=13% Similarity=0.099 Sum_probs=82.0
Q ss_pred hhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCC
Q 044630 12 IMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTN 90 (343)
Q Consensus 12 ~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~ 90 (343)
..+....|.+..+|... ..+.+...+.+...++.+++++++||+ |||+.+..+. ..+...+.+ .+.|.
T Consensus 247 ~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~-~~~~~-------- 315 (460)
T PRK11462 247 RGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAM-FFVPM-------- 315 (460)
T ss_pred HHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHH-HHhch--------
Confidence 33444455554455433 334556677777888899999999995 9998876544 221111111 11121
Q ss_pred ccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCC-cchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044630 91 EERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRT-DKGRKEINSFFNWYYTTFTLVLLITSTIV 169 (343)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~-~~~~~~~~~~f~~~y~~~~iG~~ig~~~~ 169 (343)
.+...+++..++.++ +.+...+...++.+|..|.++ ..+++.-+..++.+.+...+|..+|+.+.
T Consensus 316 -------------~~~~~~~~~~~l~g~-~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~ 381 (460)
T PRK11462 316 -------------QASITMFVFIFVIGV-LHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALI 381 (460)
T ss_pred -------------hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 122234445556677 777777777788888866321 11222334456666677888888888776
Q ss_pred heeee-ccc
Q 044630 170 AYVQT-VSW 177 (343)
Q Consensus 170 ~~l~~-~gw 177 (343)
+++-+ .||
T Consensus 382 g~iL~~~Gy 390 (460)
T PRK11462 382 GWMLAYGGY 390 (460)
T ss_pred HHHHHHcCC
Confidence 66544 344
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00039 Score=66.88 Aligned_cols=145 Identities=17% Similarity=0.258 Sum_probs=109.6
Q ss_pred hHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCccccccc
Q 044630 21 LNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQ 97 (343)
Q Consensus 21 ~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~ 97 (343)
-+.+|++..+.......+.++..++-.+.|++..|.++++++..+++ .++..++.+++..
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~----------------- 298 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL----------------- 298 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 34689999999999999999999999999999997789999988887 4444444444431
Q ss_pred cCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee---
Q 044630 98 CIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT--- 174 (343)
Q Consensus 98 ~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~--- 174 (343)
.+.+.+..+++++|+ |.|.+.....+..-|.-.+++ .+.+.+.+-.+..+...+|..+++.+.|
T Consensus 299 ------~~~~~~~~~~~l~G~-g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~ 365 (403)
T PF03209_consen 299 ------GSPWLFRPGVFLLGL-GNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTFLGGALRDLVR 365 (403)
T ss_pred ------ccchHHHHHHHHHHH-hhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 135788999999999 999998888888888765442 5677888777666666666655554433
Q ss_pred --------ccccccchhHHHHHHHHHHHH
Q 044630 175 --------VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 175 --------~gw~~~F~i~~~~~~l~~~~~ 195 (343)
.+|...|.+-++++++++++.
T Consensus 366 ~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 366 ALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888877776554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=71.75 Aligned_cols=91 Identities=9% Similarity=0.082 Sum_probs=74.1
Q ss_pred chHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-ccccccch
Q 044630 104 NQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VSWAWGFT 182 (343)
Q Consensus 104 ~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~gw~~~F~ 182 (343)
.+.+.+.+..++.++ |.....|...++.+++.|++ .|++.++.++.+..+|..+++.+.....+ .+|...|.
T Consensus 379 ~s~~~~i~~~~~~~~-ge~~~~p~~~~~~~~~aP~~------~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~ 451 (475)
T TIGR00924 379 TSPWFMVLIYLFQTL-GELMISPLGLSWWTKIAPQR------LMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFG 451 (475)
T ss_pred cCHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 357778889999999 99999999999999987653 48999999999999999999888877766 78888888
Q ss_pred hHHHHHHHHHHHHHhccce
Q 044630 183 IPTVCLFCGLVLLFAGMRI 201 (343)
Q Consensus 183 i~~~~~~l~~~~~~~~~~~ 201 (343)
..++..++..++++...|+
T Consensus 452 ~~~~~~~~~~~~~~~~~~~ 470 (475)
T TIGR00924 452 KIGLVTLLVGVVMALMVPW 470 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777766666666554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00025 Score=69.73 Aligned_cols=134 Identities=17% Similarity=0.221 Sum_probs=94.6
Q ss_pred hHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCC
Q 044630 13 MAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCT 89 (343)
Q Consensus 13 ~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~ 89 (343)
.+.++.|.+..+|.++..+............++.++...+++| +|||++..++. .++.+++.+. |
T Consensus 256 ~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~---~-------- 323 (467)
T COG2211 256 GSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFT---P-------- 323 (467)
T ss_pred hhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhh---c--------
Confidence 3455666777788888888888888888888889999999999 59999999997 4444444333 2
Q ss_pred CccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCc-chhhhHHHHHHHHHHHHHHHHHHHHhh
Q 044630 90 NEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTD-KGRKEINSFFNWYYTTFTLVLLITSTI 168 (343)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~-~~~~~~~~~f~~~y~~~~iG~~ig~~~ 168 (343)
..+.+++++...+.++ |.+...+...++++|..|-++- .+++.-+-.++..-+..=+|..++..+
T Consensus 324 -------------~~~~~l~~~~~~i~~~-g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 324 -------------AGSVVLIVVALIIAGV-GTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred -------------CcchHHHHHHHHHHHH-HhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 1246777777788889 9999999999999998763321 122334555555556666666666655
Q ss_pred hhee
Q 044630 169 VAYV 172 (343)
Q Consensus 169 ~~~l 172 (343)
.|++
T Consensus 390 ~g~~ 393 (467)
T COG2211 390 PGWI 393 (467)
T ss_pred HHHH
Confidence 5543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00016 Score=69.29 Aligned_cols=143 Identities=14% Similarity=0.140 Sum_probs=107.0
Q ss_pred hhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 044630 12 IMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNE 91 (343)
Q Consensus 12 ~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~ 91 (343)
+.++++.|+.+..|+++.+++..++.+-++..++..+|.++-.| +-..|.+.+.++++.+++....+.+
T Consensus 255 ~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~~~~~l~~---------- 323 (422)
T COG0738 255 IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLLLAVALIG---------- 323 (422)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 34678899999899999999999999999999999999999998 4878888777766666555554422
Q ss_pred cccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhe
Q 044630 92 ERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAY 171 (343)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~ 171 (343)
+. .-..++.++|+ ..+...|.+.+...+-+++++. .++ ..-....+|+.+-|.+.|+
T Consensus 324 -------------g~-v~~~~l~~ig~-F~simfPTIfslal~~l~~~ts-----~~s---~~l~maivGGAiiP~l~G~ 380 (422)
T COG0738 324 -------------GV-VALYALFLIGL-FNSIMFPTIFSLALKNLGEHTS-----VGS---GLLVMAIVGGAIIPPLQGV 380 (422)
T ss_pred -------------Ch-HHHHHHHHHHH-HhHHHHHHHHHHHHhccCcccc-----ccc---eeeeeheecchHHHHHHHH
Confidence 12 23446678899 9999999999999999985431 333 2223445677778999999
Q ss_pred eee-ccccccch-hHHHHH
Q 044630 172 VQT-VSWAWGFT-IPTVCL 188 (343)
Q Consensus 172 l~~-~gw~~~F~-i~~~~~ 188 (343)
+.| .|-...+. ++..+.
T Consensus 381 i~d~~g~~~~~~~~pllc~ 399 (422)
T COG0738 381 IADMFGIQLTFLIVPLLCY 399 (422)
T ss_pred HHHhhhhHHHHHHHHHHHH
Confidence 999 77776665 444443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00016 Score=53.51 Aligned_cols=55 Identities=22% Similarity=0.339 Sum_probs=47.6
Q ss_pred hhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 044630 11 GIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF 67 (343)
Q Consensus 11 g~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~ 67 (343)
.+..+++.|+.+ .|++..+.+.+.++......++++++|+++||+ ||+|.+....
T Consensus 18 ~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~ 72 (77)
T PF12832_consen 18 CLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGS 72 (77)
T ss_pred HHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHH
Confidence 355667777774 899999999999999999999999999999995 9988887654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00074 Score=65.91 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=87.7
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhh-cC
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAI-VP 81 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~-~~ 81 (343)
...+++....+|.|+++.+|++..+.+.......++..++..+.+.+.++. +++|.+.... .+|.+++.+... .+
T Consensus 231 ~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig~~l~~~~~~~~~ 309 (413)
T PRK15403 231 YIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVGLALLIVGNLLWP 309 (413)
T ss_pred HHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344566666778999999999999999887766677777666666655443 3444433222 344443333211 11
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
......+++.++.++ |.|...|+..+..-.+.+ ++ +++..+.+......+
T Consensus 310 ----------------------~~~~~~~~~~~l~~~-G~~~~~p~~~~~al~~~~--~~-----~G~a~a~~~~~~~~~ 359 (413)
T PRK15403 310 ----------------------HVWLWSVLGTSLYAF-GIGLIFPTLFRFTLFSNN--LP-----KGTVSASLNMVILMV 359 (413)
T ss_pred ----------------------ccHHHHHHHHHHHHH-HHHHHhHHHHHHHhccCC--CC-----CcHHHHHHHHHHHHH
Confidence 123335667778888 888888888753322222 12 233334444445555
Q ss_pred HHHHHhhhheeeeccccccchhHHHHHH
Q 044630 162 LLITSTIVAYVQTVSWAWGFTIPTVCLF 189 (343)
Q Consensus 162 ~~ig~~~~~~l~~~gw~~~F~i~~~~~~ 189 (343)
..+++...+++.+.+=...|....++..
T Consensus 360 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 387 (413)
T PRK15403 360 MAVSVEIGRWLWFNGGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 5666666666654333555554444433
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00022 Score=70.64 Aligned_cols=162 Identities=16% Similarity=0.158 Sum_probs=102.6
Q ss_pred hhhhHHhhhhh---HHHHHHhhHhcCCChH-HHHHHHHHH----HHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHH
Q 044630 3 TFERLGSFGIM---AIFTVYLLNEYNVSQA-YVAAKFGAW----NGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGM 71 (343)
Q Consensus 3 ~~e~~~~yg~~---~~L~~yl~~~lg~s~~-~a~~~~~~~----~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~ 71 (343)
+++.++++-.. .+...+.....+.+.. ..+...+.. .....+.+++-|.++||| |||..+.+.. .++.
T Consensus 28 fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~ 106 (463)
T KOG2816|consen 28 FLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPA 106 (463)
T ss_pred HHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhH
Confidence 44555555544 4444555544444332 223333333 456778889999999996 9999988775 2222
Q ss_pred HHHHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHH
Q 044630 72 LMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFF 151 (343)
Q Consensus 72 ~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f 151 (343)
..+.+. .+++++ +.-..- |.+.+.+...++++|.-.++ .|...+
T Consensus 107 ~~~~~~----------------------------~~~~~~-~~~l~g-~~~~~~s~~~a~vadis~~~------~R~~~~ 150 (463)
T KOG2816|consen 107 LCLLFQ----------------------------GYWFFL-LLGLSG-GFSAIFSVGFAYVADISSEE------ERSSSI 150 (463)
T ss_pred HHHHHH----------------------------HHHHhh-hccccc-chhhhhhhhhhheeeccchh------HHHHHH
Confidence 221111 122222 111112 34445566667777775543 388888
Q ss_pred HHHHHHHHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccce
Q 044630 152 NWYYTTFTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRI 201 (343)
Q Consensus 152 ~~~y~~~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~ 201 (343)
++...+...+..++|.+++++.+ .|.-..|.++++..+++++..++..|.
T Consensus 151 gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E 201 (463)
T KOG2816|consen 151 GLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE 201 (463)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence 99888888899999999999988 999999999998888877665554443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0013 Score=65.55 Aligned_cols=170 Identities=16% Similarity=0.097 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHH
Q 044630 32 AAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLH 110 (343)
Q Consensus 32 ~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~ 110 (343)
+...++..+...+..++-|-++|+. |+||.++... .++.+......+.+ | ..+.+.
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~---~-------------------~~~~~~ 129 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS---P-------------------GQWWLA 129 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC---c-------------------chHHHH
Confidence 4556677778889999999999995 8888887766 44443322222211 0 122333
Q ss_pred HHHHHHHHhccCCCccchhhhhhccCCCCCcchhh---------------------hHHHHHHHHHHHHHHHHHHHHhhh
Q 044630 111 VAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRK---------------------EINSFFNWYYTTFTLVLLITSTIV 169 (343)
Q Consensus 111 ~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~---------------------~~~~~f~~~y~~~~iG~~ig~~~~ 169 (343)
..+++++..+.+.......+++.|.-++++ ..++ .|++.-++-+...++|+++...+.
T Consensus 130 ~~l~iia~v~~~~~~vfyna~LP~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~ 208 (477)
T PF11700_consen 130 LVLFIIANVGYEASNVFYNAYLPDLARPEP-RVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLIS 208 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcCCCh-hhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHH
Confidence 344444332666666777788888876543 2100 125555566667788887766543
Q ss_pred hee-ee--------ccccccchhHHHHHHH-HHHHHHhccceEE-EecCCC-CchhHHHHHHHHHHHh
Q 044630 170 AYV-QT--------VSWAWGFTIPTVCLFC-GLVLLFAGMRIYV-LVIAEG-SLFSSIVQVFVVAYKK 225 (343)
Q Consensus 170 ~~l-~~--------~gw~~~F~i~~~~~~l-~~~~~~~~~~~~~-~~~p~~-~~l~~~~~v~~~a~~~ 225 (343)
-.+ .. .+.|..+.+.++-.++ ++..++..+++-+ +..|.+ +.++.-.|-+...+|+
T Consensus 209 l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~ 276 (477)
T PF11700_consen 209 LLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKE 276 (477)
T ss_pred HHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence 332 11 2357777777775444 4444444444322 112222 3334444444445544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0014 Score=59.59 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=79.3
Q ss_pred HHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCcccc
Q 044630 18 VYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERI 94 (343)
Q Consensus 18 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~~~ 94 (343)
.-+.+.+|+++.+.+.+..+-..+.+++ ++.|.+.|++ |.+.++.+|. .+|+.++.+... ...
T Consensus 26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~-~~i----------- 91 (250)
T PF06813_consen 26 PQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVS-GRI----------- 91 (250)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHh-Ccc-----------
Confidence 4466789999999999999988888875 8889999995 9999999887 778877665421 110
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 044630 95 HGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLI 164 (343)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~i 164 (343)
.+...+.+.+..++.+. |.+.+......-..+.||++ |+.+.++.-....+++.+
T Consensus 92 -------~~~~~~~~~~~~~l~~~-s~~~~~ta~lvt~~~NFP~~-------RG~vvgilk~~~GLSaai 146 (250)
T PF06813_consen 92 -------PSLPVWLMCLFLFLGGN-SSCWFNTASLVTCVRNFPRS-------RGTVVGILKGFFGLSAAI 146 (250)
T ss_pred -------CccchHHHHHHHHHHcc-cHHHhhhHHHHHHHHhCccc-------cCceehhhhHHHHhHHHH
Confidence 01235556555555555 55555444444455778753 677766655445555444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0013 Score=64.06 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=104.1
Q ss_pred hhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 044630 11 GIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTN 90 (343)
Q Consensus 11 g~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~ 90 (343)
...++...|+++.-|.+....+...++-.+.=...-.+.+++-.|+ |.++++.++.+...+=..+.+..++
T Consensus 225 ~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l~a~~~~-------- 295 (400)
T PF03825_consen 225 AYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLLYAYFSD-------- 295 (400)
T ss_pred HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 3455677888875447777777666655555566667889999994 9999999887322221112222110
Q ss_pred ccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHH-HHHHHHHHHHhhh
Q 044630 91 EERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYT-TFTLVLLITSTIV 169 (343)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~-~~~iG~~ig~~~~ 169 (343)
+.........++..+-|+ ..|.+......++.+..|++. |.++-+++.. ...+|..+|..++
T Consensus 296 ----------~~~~~~~~~~l~q~lhG~-tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~ig 358 (400)
T PF03825_consen 296 ----------PWPFIVALQLLGQLLHGL-TFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIG 358 (400)
T ss_pred ----------CcHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 000011122233345788 888888888899999987653 6777777764 5679999999999
Q ss_pred heeee-cc------ccccchhHHHHHHHHHHHHHhc
Q 044630 170 AYVQT-VS------WAWGFTIPTVCLFCGLVLLFAG 198 (343)
Q Consensus 170 ~~l~~-~g------w~~~F~i~~~~~~l~~~~~~~~ 198 (343)
|++.| +| |...+.++++..++..+++++.
T Consensus 359 G~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 359 GWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99887 55 4445566666666666666554
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0043 Score=61.65 Aligned_cols=144 Identities=13% Similarity=0.129 Sum_probs=87.1
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 044630 22 NEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQC 98 (343)
Q Consensus 22 ~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~ 98 (343)
.+-|++..++..........+.++.+++.++-|| +|||+.++++. .+..+++++..+....
T Consensus 298 ~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~~~~~~~~~~~l~~~--------------- 361 (485)
T KOG0569|consen 298 KTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAVALLLMSIALFLSNS--------------- 361 (485)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 3569999999888888999999999999999999 59999999987 2222222222221100
Q ss_pred CCCCcchHH-HHHHHHH--HHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-
Q 044630 99 IGPNRNQLA-FLHVAMF--WLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT- 174 (343)
Q Consensus 99 ~~~~~~~~~-~l~~~l~--l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~- 174 (343)
...-.. ..+.+.+ ...+ +.| ..|...=+.+|.+++.+ |..++++-+....+..++-......+++
T Consensus 362 ---~~~~~~y~~i~~~~~~~~~f-~~G-~gpi~~fi~aELf~~~~------R~aa~s~~~~~~w~~~fiv~~~fp~l~~~ 430 (485)
T KOG0569|consen 362 ---FGSWLSYLCIAAIFLFIISF-AIG-PGPIPWFIGAELFPQSA------RSAAQSVATAVNWLSNFIVGFAFPPLQNV 430 (485)
T ss_pred ---hhhHHHHHHHHHHHHHHHhh-hcC-CCchhHHHHHHhCCccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011 1122222 2223 332 34666677889998764 7777777666666666655555666666
Q ss_pred ccccccchhHHHHHHHHHH
Q 044630 175 VSWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 175 ~gw~~~F~i~~~~~~l~~~ 193 (343)
.|- ..|.+.++..++..+
T Consensus 431 ~g~-~~filF~i~~~~~~i 448 (485)
T KOG0569|consen 431 IGP-YVFILFVIPLAIFLI 448 (485)
T ss_pred hcc-hhhHHHHHHHHHHHH
Confidence 553 455554444444433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0002 Score=71.41 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=53.8
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHH
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAY---IGKFVTIVLGF 67 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~---lGr~~~i~~~~ 67 (343)
+|-...-|+...++++|+++..|++..+++.+...+.++..++.++.|+++||. ..+|.....+.
T Consensus 283 ~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~ 350 (495)
T KOG2533|consen 283 FFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFL 350 (495)
T ss_pred HHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455666789999999999997789999999999999999999999999999993 25554444444
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0013 Score=58.77 Aligned_cols=138 Identities=19% Similarity=0.255 Sum_probs=92.9
Q ss_pred hcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCC
Q 044630 23 EYNVSQ--AYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIG 100 (343)
Q Consensus 23 ~lg~s~--~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~ 100 (343)
+++.+. ...+...+.+.....++.++.|.++||+ |||+.+..+.........+..+.+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~------------------ 91 (338)
T COG0477 31 TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN------------------ 91 (338)
T ss_pred HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc------------------
Confidence 344444 4778888888889999999999999996 9998887776210111111111110
Q ss_pred CCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHH-HHHHHHHHHHhhhheeee---cc
Q 044630 101 PNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYT-TFTLVLLITSTIVAYVQT---VS 176 (343)
Q Consensus 101 ~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~-~~~iG~~ig~~~~~~l~~---~g 176 (343)
.....+.+.+...|+ +.|...+...+++.|.+++ . ..++...+.... ...+|..+++.+.+.+.. .+
T Consensus 92 ---~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (338)
T COG0477 92 ---VGLALLLILRLLQGL-GGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG 162 (338)
T ss_pred ---chHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 135667777777889 9999999999999999875 1 136677777666 567777777765554433 58
Q ss_pred ccccchhHHHHH
Q 044630 177 WAWGFTIPTVCL 188 (343)
Q Consensus 177 w~~~F~i~~~~~ 188 (343)
|+..|.+.....
T Consensus 163 ~~~~~~~~~~~~ 174 (338)
T COG0477 163 WRAAFLLAALLG 174 (338)
T ss_pred hHHHHHHHHHHH
Confidence 888666555443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.55 E-value=1.5e-05 Score=80.48 Aligned_cols=184 Identities=14% Similarity=0.187 Sum_probs=2.7
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQL 83 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~ 83 (343)
...+|....-..-+++.++++.++++.+.+.+-++..+..++-.++++|. -|-|-+-+|. .+|.++.++ |.+
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l----Phf 90 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL----PHF 90 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc----cHh
Confidence 34455555555677788999999999999999999999999999999993 5555555555 344444333 433
Q ss_pred CCCCCCCccc---------ccccc---------------C---C-CCcchHHHHHHHHHHHHHhccCCCccchhhhhhcc
Q 044630 84 RPPHCTNEER---------IHGQC---------------I---G-PNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQ 135 (343)
Q Consensus 84 ~~~~c~~~~~---------~~~~~---------------~---~-~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~ 135 (343)
..++....+. ....| . . ........++++-++.|+ |.....+.-.+|+=|-
T Consensus 91 ~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~Gi-G~~pl~tLG~tYiDDn 169 (539)
T PF03137_consen 91 LSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGI-GATPLYTLGITYIDDN 169 (539)
T ss_dssp -------------------------------------------------------------SS-S---------------
T ss_pred hcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhc-cccCCccceeeeeccc
Confidence 3221111100 01112 1 1 111124567778888999 8888887777777665
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee-------------------e----ccccccchhHHHHHHHHH
Q 044630 136 FDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ-------------------T----VSWAWGFTIPTVCLFCGL 192 (343)
Q Consensus 136 ~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~-------------------~----~gw~~~F~i~~~~~~l~~ 192 (343)
.+++ .-.-+.+++|....+|.++|.++++..- | ..|+.+|.+.+++.++..
T Consensus 170 v~~~------~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a 243 (539)
T PF03137_consen 170 VSKK------NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA 243 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc------cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 5433 2566788888888899988888776531 1 149999999998877766
Q ss_pred HHHHhccceE
Q 044630 193 VLLFAGMRIY 202 (343)
Q Consensus 193 ~~~~~~~~~~ 202 (343)
+.++...|+.
T Consensus 244 ipl~~FPk~l 253 (539)
T PF03137_consen 244 IPLFFFPKKL 253 (539)
T ss_dssp ----------
T ss_pred HHHHcCCccC
Confidence 6665554443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00048 Score=68.93 Aligned_cols=170 Identities=9% Similarity=0.074 Sum_probs=102.2
Q ss_pred HHhhhhhHHHHHHhhHhcCCChH----HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH-------HHHHH---HHHHH
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQA----YVAAKFGAWNGVADFLTVIFAFLADAYIGKFVT-------IVLGF---LLGML 72 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~----~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~-------i~~~~---~~g~~ 72 (343)
..|..+...++.|.++..+.+.. .++.+.+...+...+..++.|++.|| +|||+. +.+|. .+|++
T Consensus 283 ~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~~~~~~~~k~~~G~~l~~~~~~ 361 (489)
T PRK10207 283 ILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTH-LGSKGKDLSMPMKFTLGMFLCSLGFL 361 (489)
T ss_pred HHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 34555557777887753332211 22333344445565777778899999 598862 55554 22332
Q ss_pred HHHHHhh-cCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHH
Q 044630 73 MVTLTAI-VPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFF 151 (343)
Q Consensus 73 ~l~~~~~-~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f 151 (343)
.+..... .... ....+.+.+....++.++ |.+...|...+++.+..|++ .++...
T Consensus 362 ~~~~~~~~~~~~-----------------~~~~s~~~~i~~~~l~g~-Ge~~~~~~g~~~~~~~aP~~------~~g~~~ 417 (489)
T PRK10207 362 TAAAAGMWFADA-----------------QGLTSPWFIVLVYLFQSL-GELFISALGLAMIAALVPQH------LMGFIL 417 (489)
T ss_pred HHHHHHHhhcCC-----------------CCccCHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhChHH------HHHHHH
Confidence 2211111 0000 001235666677888999 99999999999998887643 378888
Q ss_pred HHHHHHHHHHHHHHHhhhheeee-----------ccccccchhHHHHHHHHHHHHHhccce
Q 044630 152 NWYYTTFTLVLLITSTIVAYVQT-----------VSWAWGFTIPTVCLFCGLVLLFAGMRI 201 (343)
Q Consensus 152 ~~~y~~~~iG~~ig~~~~~~l~~-----------~gw~~~F~i~~~~~~l~~~~~~~~~~~ 201 (343)
+.++...++|+.+|..+..+.+. -.+...|...++..++..++++...|+
T Consensus 418 g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~ 478 (489)
T PRK10207 418 GMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPW 478 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998877654421 124556666665555544555443443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00013 Score=69.75 Aligned_cols=162 Identities=21% Similarity=0.219 Sum_probs=110.4
Q ss_pred HHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-HHHHH-HH-HHHHHHHHHHhhcCCCCCCCCCC
Q 044630 14 AIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKF-VTIVL-GF-LLGMLMVTLTAIVPQLRPPHCTN 90 (343)
Q Consensus 14 ~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~-~~i~~-~~-~~g~~~l~~~~~~~~~~~~~c~~ 90 (343)
..+++++.+.+.-+..+.++..--..+...++..+.|.++||+ +.- +.+.. +. .+|.....+ |.
T Consensus 291 Ptlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~i----P~-------- 357 (464)
T KOG3764|consen 291 PTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPI----PF-------- 357 (464)
T ss_pred cccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchh----Hh--------
Confidence 3456777788876666777777667777888999999999996 832 33332 22 444222111 21
Q ss_pred ccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 044630 91 EERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVA 170 (343)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~ 170 (343)
| ++...+++-...+++ |.+...+...+..+...|.++.++-..-++.+++.-.+..+|..+||+++|
T Consensus 358 -------~-----~~~~~L~vp~~~l~~-~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg 424 (464)
T KOG3764|consen 358 -------A-----TSIAQLWVPNFGLGF-GIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGG 424 (464)
T ss_pred -------h-----hhHHHHhhhhHHHHH-HHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccc
Confidence 1 134556666677778 888888888888888887654333235677888888889999999999999
Q ss_pred eeee-ccccccchhHHHHHHHHHHHHHhccce
Q 044630 171 YVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRI 201 (343)
Q Consensus 171 ~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~ 201 (343)
.+.+ .|++|.-.+-++..++..-++...+..
T Consensus 425 ~iv~~iGF~wl~~iig~~n~iyapvl~ll~~v 456 (464)
T KOG3764|consen 425 SLVEAIGFEWLMTIIGILNLIYAPVLLLLRIV 456 (464)
T ss_pred hheeehhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 898887776666655554444444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.002 Score=61.99 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=98.7
Q ss_pred hhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHHHHHHHH----HHHHHHHHHHhh-cCCCCCCCCC
Q 044630 20 LLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIG-----KFVTIVLGF----LLGMLMVTLTAI-VPQLRPPHCT 89 (343)
Q Consensus 20 l~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lG-----r~~~i~~~~----~~g~~~l~~~~~-~~~~~~~~c~ 89 (343)
|..|++++..-.+..+..-.... ...+..|+.||++ + ||.-.++.. ..|..+...... +......
T Consensus 6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~--- 80 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQ--- 80 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccc---
Confidence 45688998888877776655544 4578899999996 6 665555543 222222111111 0100000
Q ss_pred CccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044630 90 NEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIV 169 (343)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~ 169 (343)
-..+.........++..++|+ |.+.......++.+|.-+|++ |.+..++.|...-+|.+++..+.
T Consensus 81 --------~~~~~~~g~~~a~l~F~l~G~-G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~ 145 (403)
T PF03209_consen 81 --------SSGPFWLGLALAALAFLLYGL-GVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF 145 (403)
T ss_pred --------cccccHHHHHHHHHHHHHHHh-hHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 000111122334455567888 888888999999999987653 88899999988889999998888
Q ss_pred heeee-cccc----ccchhHHHHHHHHHHHHHhccceEEEe
Q 044630 170 AYVQT-VSWA----WGFTIPTVCLFCGLVLLFAGMRIYVLV 205 (343)
Q Consensus 170 ~~l~~-~gw~----~~F~i~~~~~~l~~~~~~~~~~~~~~~ 205 (343)
+.+-+ ++-. ..-.++.+.+++.++..+-..+++.+.
T Consensus 146 g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~ 186 (403)
T PF03209_consen 146 GRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRR 186 (403)
T ss_pred HHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccc
Confidence 86555 5432 222233344444444444444554433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0072 Score=58.87 Aligned_cols=130 Identities=13% Similarity=0.054 Sum_probs=80.4
Q ss_pred HHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCcc
Q 044630 16 FTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEE 92 (343)
Q Consensus 16 L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~ 92 (343)
..+|.++.+| +...+.....+|+.......+.+-|+.|++ |-|.+..++. .+|..+=.++.. |...+
T Consensus 67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~-p~v~~------- 136 (480)
T KOG2563|consen 67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSL-PFVPP------- 136 (480)
T ss_pred HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccC-ccccc-------
Confidence 4456666677 666777788889999999999999999995 9999999988 566654444332 32111
Q ss_pred ccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhee
Q 044630 93 RIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYV 172 (343)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l 172 (343)
.....+...|-.+.+. ..-.+...-+-..+-.|+++ +|..+-..-.+++.+|..+|.++.+.+
T Consensus 137 ----------~f~~~l~~~Gq~iaa~-Aq~Fim~lPskiA~~WF~~~------qra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 137 ----------LFRRPLTHTGQSIAAA-AQPFILGLPSKIAAVWFPPD------QRAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred ----------cchhhhhHHhHHHHHH-hhhHhhccccHHHHhhCCcc------hhhhhhhHHHhcchHHHHHHhhcccee
Confidence 0111244555555555 44333332233334566654 266666665666667777666655544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0026 Score=63.79 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhee------ee----
Q 044630 105 QLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYV------QT---- 174 (343)
Q Consensus 105 ~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l------~~---- 174 (343)
+.+.+.....+.++ |.+...|...+++.+..|++ .|++.++.++.+..+|+.++..+.... .+
T Consensus 381 s~~~~~~~~~l~~~-ge~~~~p~g~s~~~~~aP~~------~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~ 453 (500)
T PRK09584 381 SVNWLIASYGLQSI-GELMISGLGLAMVAQLVPQR------LMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMS 453 (500)
T ss_pred CHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhh
Confidence 45567788889999 99999999999999987653 489999999888888888776665421 11
Q ss_pred -ccccccchhHHHHHHHHHHHHHhccc
Q 044630 175 -VSWAWGFTIPTVCLFCGLVLLFAGMR 200 (343)
Q Consensus 175 -~gw~~~F~i~~~~~~l~~~~~~~~~~ 200 (343)
.++...|...++..++..++++...|
T Consensus 454 ~~~~~~~f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 454 LEVYGRVFLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23667777666655444444444333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0011 Score=68.37 Aligned_cols=181 Identities=15% Similarity=0.196 Sum_probs=119.6
Q ss_pred hhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCC
Q 044630 10 FGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPP 86 (343)
Q Consensus 10 yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~ 86 (343)
.|.....+.-+.+.++++..+.+.+.+.+-+++.+..++..+.+-|. =|-|.|-+|. .+|.++.++ |.+...
T Consensus 113 ~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~al----PHf~~~ 187 (735)
T KOG3626|consen 113 VGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFAL----PHFFSG 187 (735)
T ss_pred hhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHhC----hHHhcC
Confidence 35555556667778999999999999999999999999999999994 5666666665 333333322 422110
Q ss_pred CC------------CC--------------ccc-cccccC--CCCcc-hHHHHHHHHHHHHHhccCCCccchhhhhhccC
Q 044630 87 HC------------TN--------------EER-IHGQCI--GPNRN-QLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQF 136 (343)
Q Consensus 87 ~c------------~~--------------~~~-~~~~~~--~~~~~-~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~ 136 (343)
+. .+ ..+ ..+.|+ ..++. -+.+++++.++.|+ |.-...+.-.+|+=|-.
T Consensus 188 ~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI-G~Tpi~tlGisYiDDnv 266 (735)
T KOG3626|consen 188 PYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI-GATPIFTLGISYIDDNV 266 (735)
T ss_pred cchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc-CCCCCccCCCccccccc
Confidence 00 00 000 112232 12222 34467788889999 88777777767665544
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee--------------------ccccccchhHHHHHHHHHHHHH
Q 044630 137 DSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT--------------------VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 137 ~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~--------------------~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
.++ .-..++++.|....+|.++|.+++++... .-|+.+|++++.+++++.+.++
T Consensus 267 k~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f 340 (735)
T KOG3626|consen 267 KKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLF 340 (735)
T ss_pred ccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 332 35678888888888999999888776421 2499999999998888877776
Q ss_pred hccceE
Q 044630 197 AGMRIY 202 (343)
Q Consensus 197 ~~~~~~ 202 (343)
...+..
T Consensus 341 ~fPk~l 346 (735)
T KOG3626|consen 341 FFPKEL 346 (735)
T ss_pred hCcccC
Confidence 654443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=65.14 Aligned_cols=142 Identities=8% Similarity=-0.135 Sum_probs=95.4
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCccccccccCC
Q 044630 22 NEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVP-QLRPPHCTNEERIHGQCIG 100 (343)
Q Consensus 22 ~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~-~~~~~~c~~~~~~~~~~~~ 100 (343)
+.+|++..+.+.+.....++..++..+.+.+.+| ++.|+++.++.++..+......... ... .
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~---------------~ 344 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWN---------------L 344 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccc---------------c
Confidence 4689999999999999888888899999999888 5999998887733222111110000 000 0
Q ss_pred CCc-chHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-cc--
Q 044630 101 PNR-NQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-VS-- 176 (343)
Q Consensus 101 ~~~-~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~g-- 176 (343)
... ...+.......+.++ +.|........++.+..+++. .++.++++....|+|..+++.+++++.+ .|
T Consensus 345 ~~gi~~~~~~~~~~~l~~~-~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~ 417 (468)
T TIGR00788 345 AFGISDEVFVLGDSIIAEV-LAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGIT 417 (468)
T ss_pred ccCCCCeeeeeehhHHHHH-HHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 000 011223333455666 666667777888888877653 6889999998899999999999998887 66
Q ss_pred ---ccccchhHHH
Q 044630 177 ---WAWGFTIPTV 186 (343)
Q Consensus 177 ---w~~~F~i~~~ 186 (343)
++..+....+
T Consensus 418 ~~~~~~~~~~i~i 430 (468)
T TIGR00788 418 CDNSNNLWLLILG 430 (468)
T ss_pred cccccchHHHHHH
Confidence 6655554333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.012 Score=57.01 Aligned_cols=127 Identities=17% Similarity=0.099 Sum_probs=79.2
Q ss_pred hhHHHHHHhhHhcCC---Ch----HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCC
Q 044630 12 IMAIFTVYLLNEYNV---SQ----AYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQL 83 (343)
Q Consensus 12 ~~~~L~~yl~~~lg~---s~----~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~ 83 (343)
+...+++|+++..+- +. +-.+...++.+....+..++-|-++|.. |+||-..... .+|...+....+.|.
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~- 111 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP- 111 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC-
Confidence 456789999987655 33 3345556677778888999999999996 8766655444 666665554444331
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 044630 84 RPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLL 163 (343)
Q Consensus 84 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ 163 (343)
........+.+.+..+ +..+....-.+++.|..++++- .|.+..+| -..++|+.
T Consensus 112 -------------------~s~~~~~l~~~il~~i-~~~~s~Vfyds~L~~~~~k~~~----~riS~lg~--~~gylgs~ 165 (438)
T COG2270 112 -------------------GSYLLLLLLFLILASI-GFEFSNVFYDSMLPRLTTKDNM----GRISGLGW--ALGYLGSV 165 (438)
T ss_pred -------------------CchHHHHHHHHHHHHH-hcchhheehhhHhhhhcCcccc----Cccccccc--ccccccch
Confidence 1133444444445566 7777778888999888765431 24454443 34455555
Q ss_pred HHH
Q 044630 164 ITS 166 (343)
Q Consensus 164 ig~ 166 (343)
+..
T Consensus 166 i~l 168 (438)
T COG2270 166 ILL 168 (438)
T ss_pred HHH
Confidence 433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.015 Score=49.07 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHH
Q 044630 38 WNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLA 117 (343)
Q Consensus 38 ~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~ 117 (343)
..+...+..++...+-++ +|.|++++++. +++.+...+-+.| +.+.++.+-.+.|
T Consensus 46 ~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~-~~y~~y~~~~~~~-----------------------~~~~l~~~s~l~G 100 (156)
T PF05978_consen 46 LYGSFAISCLFAPSIVNK-LGPKWSMILGS-LGYAIYIASFFYP-----------------------NSYTLYPASALLG 100 (156)
T ss_pred HHHHHHHHHHhHHHHHHH-HhhHHHHHHHH-HHHHHHHHHHHhh-----------------------hHHHHHHHHHHHh
Confidence 333445555666777888 69999999987 3333333332222 3567888888999
Q ss_pred HhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 044630 118 VGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTI 168 (343)
Q Consensus 118 ~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~ 168 (343)
+ |.+..+.....++.+.-+++ .+++..+++....+.+.++|.++
T Consensus 101 ~-~~a~lW~aqg~ylt~~s~~~------~~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 101 F-GAALLWTAQGTYLTSYSTEE------TIGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred h-hhHHhhHhhhHHHHHcCCHH------HHhhHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999989888754322 35666676665566666665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0072 Score=58.86 Aligned_cols=155 Identities=9% Similarity=0.125 Sum_probs=96.6
Q ss_pred hhhhHHHHHHhhHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 044630 10 FGIMAIFTVYLLNEYN---VSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPP 86 (343)
Q Consensus 10 yg~~~~L~~yl~~~lg---~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~ 86 (343)
+..-...+.|.+..++ .++...|.+.+.-...-.+.-.+..++-+| +|.|+.++++..+..+=...+++.+
T Consensus 237 ~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~~iRi~~~~~~~----- 310 (412)
T PF01306_consen 237 DVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIMAIRIIGSGFAT----- 310 (412)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHHHHHHHHHhhhc-----
Confidence 3333346677775443 233334444555555556677788999999 5999999998743333223333322
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHH-HHHHHHHHHH
Q 044630 87 HCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYY-TTFTLVLLIT 165 (343)
Q Consensus 87 ~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y-~~~~iG~~ig 165 (343)
+.+.+.+.-.+-++ -.+..-..+.-|+++.+|++ ...+.+.+.+ .+..+|..+.
T Consensus 311 ------------------~~~~i~~~klLH~~-e~~l~lva~fkYI~~~fd~r------lsAt~y~v~~~~~~~~~~~i~ 365 (412)
T PF01306_consen 311 ------------------NPWVISLIKLLHAL-EFPLLLVAAFKYITAHFDKR------LSATLYLVGFQFAKQIGIIIL 365 (412)
T ss_dssp ------------------SHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHS-GG------GHHHHHHHHHTTTHHHHHHHH
T ss_pred ------------------chHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHh------HHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555 55555555678999999753 2455665543 6778888888
Q ss_pred Hhhhheeee-ccccccchhHHHHHHHHHHHH
Q 044630 166 STIVAYVQT-VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 166 ~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~ 195 (343)
+.+.|++.| .|++..|.+-+.+.+...++-
T Consensus 366 s~~~G~lyd~~G~~~tylimg~iv~~~~li~ 396 (412)
T PF01306_consen 366 SPLAGYLYDRIGFQHTYLIMGLIVLPFTLIS 396 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhHhhcCcHHHHHHHHHHHHHHHHHh
Confidence 999999999 999989987666655444443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=6.5e-05 Score=68.80 Aligned_cols=129 Identities=15% Similarity=0.219 Sum_probs=98.5
Q ss_pred HHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCcc
Q 044630 16 FTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEE 92 (343)
Q Consensus 16 L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~ 92 (343)
|..+...+++++.++..++.++|+--+.+.+.+|||+-||.+|-|..-++-+ .+|.++++.....
T Consensus 66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~------------ 133 (459)
T KOG4686|consen 66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGIS------------ 133 (459)
T ss_pred hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHH------------
Confidence 4566677788888899999999999999999999999999999775444433 6777766554331
Q ss_pred ccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhee
Q 044630 93 RIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYV 172 (343)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l 172 (343)
+..|....++++.|+ |.-......+.+..-.|..++ .+-.|++.-..-.+|+.+-..+.+++
T Consensus 134 -----------~aFw~M~~GRF~FGI-GgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 134 -----------HAFWTMLAGRFLFGI-GGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred -----------HHHHHHHhhheeecc-CchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHH
Confidence 357888999999999 655555556677777776543 78888888887888888777777777
Q ss_pred ee
Q 044630 173 QT 174 (343)
Q Consensus 173 ~~ 174 (343)
.+
T Consensus 196 y~ 197 (459)
T KOG4686|consen 196 YD 197 (459)
T ss_pred HH
Confidence 66
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=96.65 E-value=4e-05 Score=75.16 Aligned_cols=151 Identities=14% Similarity=0.161 Sum_probs=83.3
Q ss_pred HHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHH-hhcCCCCCCCCCCcccc
Q 044630 17 TVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLL-GMLMVTLT-AIVPQLRPPHCTNEERI 94 (343)
Q Consensus 17 ~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~-g~~~l~~~-~~~~~~~~~~c~~~~~~ 94 (343)
..++.+..+.+.. -.......+...++.+++.++.|| +|||+.++++..+ +...+.+. .......
T Consensus 276 ~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~---------- 342 (451)
T PF00083_consen 276 SPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILGIIFFLGVS---------- 342 (451)
T ss_pred ccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccccccccccccccccc----------
Confidence 3344455666665 122223345556677788899999 5999999887621 11111111 0001000
Q ss_pred ccccCCCCcchHHHH-HHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 95 HGQCIGPNRNQLAFL-HVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 95 ~~~~~~~~~~~~~~l-~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
.++..+...+ ...+... . ...+..+....+.+|.||.+. |.++.++.+....+++++++.+..++.
T Consensus 343 -----~~~~~~~~~i~~~~l~~~-~-~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~~~~~i~~~i~~~~~~~~~ 409 (451)
T PF00083_consen 343 -----SSSWWSILSIVFLALFFA-F-FSLGWGPLPWIYTAELFPTKV------RSTGIGLSYAVGRIGGFIIPFLFPYLF 409 (451)
T ss_pred -----cccccccccceeeeeccc-c-ccccccccccccccccccccc------ccccccccccccccccccccccccccc
Confidence 0000011111 1111112 2 222445666688899998753 888888888888899999888888887
Q ss_pred e-ccccccchhHHHHHHHHHH
Q 044630 174 T-VSWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 174 ~-~gw~~~F~i~~~~~~l~~~ 193 (343)
+ .+-...|.+.+++++++.+
T Consensus 410 ~~~~~~~~~~i~~~~~~i~~i 430 (451)
T PF00083_consen 410 NNLGGWGVFLIFAGVCLIAII 430 (451)
T ss_pred ccccccccchhhHHHHHHHHh
Confidence 7 5534455555555444443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0027 Score=59.57 Aligned_cols=84 Identities=12% Similarity=-0.001 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee----------
Q 044630 105 QLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT---------- 174 (343)
Q Consensus 105 ~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~---------- 174 (343)
+.+.+.++.+++|. |.+...+..++++++.-++++ +.+..|+...+..+|+++||.+++.+..
T Consensus 9 ~~~~~l~~~f~~g~-G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 9 YYVLFLGALFVLAS-GLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred HHHHHHHHHHHHHh-hHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 57889999999999 999999999999999976542 6667888888999999999999886541
Q ss_pred -------ccccccchhHHHHHHHHHHHH
Q 044630 175 -------VSWAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 175 -------~gw~~~F~i~~~~~~l~~~~~ 195 (343)
.+|+..|.+.+++.++..+++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899986555544433333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0086 Score=61.16 Aligned_cols=143 Identities=14% Similarity=0.071 Sum_probs=98.3
Q ss_pred Hhc-CC-ChHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHH-------HHHHHH----HHHHHHHHHHhhcCCCCCCC
Q 044630 22 NEY-NV-SQAY-VAAKFGAWNGVADFLTVIFAFLADAYIGKFV-------TIVLGF----LLGMLMVTLTAIVPQLRPPH 87 (343)
Q Consensus 22 ~~l-g~-s~~~-a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~-------~i~~~~----~~g~~~l~~~~~~~~~~~~~ 87 (343)
+.+ |. ++++ ..+.++.+++.++++.+.+|+++ .++-||+ ++.... .++++++++. .|
T Consensus 381 ~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~--~p------ 451 (591)
T PTZ00207 381 TALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSVCIITMLTLFLT--LP------ 451 (591)
T ss_pred HHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHHHHHHHHHHHHH--CC------
Confidence 356 66 3232 22278899999999999999999 4344444 333333 3333333332 12
Q ss_pred CCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHH-H
Q 044630 88 CTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLIT-S 166 (343)
Q Consensus 88 c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig-~ 166 (343)
...++++-+++|+ +.|...+...+...|.|. +| -+.-||..+.+..+|+++= .
T Consensus 452 ------------------~~~L~~~~~lvg~-~~G~~~~~~~~i~selFg-k~------~g~~yN~~~~a~pigs~~~n~ 505 (591)
T PTZ00207 452 ------------------KAALPLPYFIAAF-ANGFMAATIALVTRTIFA-KD------PAKHYNFCFLGSVLSAIFLNR 505 (591)
T ss_pred ------------------ccHhHHHHHHHHH-HhhHhHHHHHHHHHHHhc-cc------hHHHhhHHhHHHHHHHHHHHH
Confidence 1468899999999 999999999999999999 54 6788888888888888764 3
Q ss_pred hhhheeee--------------ccccccchhHHHHHHHHHHHHHhcc
Q 044630 167 TIVAYVQT--------------VSWAWGFTIPTVCLFCGLVLLFAGM 199 (343)
Q Consensus 167 ~~~~~l~~--------------~gw~~~F~i~~~~~~l~~~~~~~~~ 199 (343)
.+.|++.| ..++..|++.+++.+++.++-....
T Consensus 506 ~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 506 LLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred HHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 45555432 3478889888877777766544433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0016 Score=59.43 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=88.6
Q ss_pred HHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccc
Q 044630 18 VYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQ 97 (343)
Q Consensus 18 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~ 97 (343)
.|+.+++|+.+.+.+.+.-+-.+...++..+.|-|+|+ .||||.-+..+ +-+++-.+.-..
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtyc-itYiLsCiTKhS----------------- 121 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYC-ITYILSCITKHS----------------- 121 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeeh-HHHHHHHHhhcC-----------------
Confidence 46667889999999888777666677888888999999 69999866544 333333333221
Q ss_pred cCCCCcchHHHHHHHHHHHHHhccCCCccchhhh-hhccCCCCCcchhhhHHHHHHH-HHHHHHHHHHHHHhhhheeee-
Q 044630 98 CIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPF-AVDQFDSRTDKGRKEINSFFNW-YYTTFTLVLLITSTIVAYVQT- 174 (343)
Q Consensus 98 ~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~-~ad~~~~~~~~~~~~~~~~f~~-~y~~~~iG~~ig~~~~~~l~~- 174 (343)
.+.-.+.+|+.+-|+ .+....+..-+. ++|--++++ -|..-....|+= .++++.+-++++.+.+-++.+
T Consensus 122 ------pqYkVLmVGR~LGGi-aTsLLFSaFEsWliaEHnekr~-FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~ 193 (454)
T KOG4332|consen 122 ------PQYKVLMVGRVLGGI-ATSLLFSAFESWLIAEHNEKRG-FEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDT 193 (454)
T ss_pred ------CceEEEeehhhhhhH-HHHHHHHHHHHHHHHHhhhccC-ChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 245567788888888 766655443332 233222111 111112222221 123344445555555555555
Q ss_pred --ccccccchhHHHHHHHHHHHHHh
Q 044630 175 --VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 175 --~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
.|--..|-.++.++.++..+.+-
T Consensus 194 ~slGPVAPFdAAacfLaigmAvil~ 218 (454)
T KOG4332|consen 194 FSLGPVAPFDAAACFLAIGMAVILS 218 (454)
T ss_pred hccCCCCchHHHHHHHHHHHHHHHh
Confidence 45567777666666666655543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.038 Score=54.88 Aligned_cols=121 Identities=19% Similarity=0.283 Sum_probs=79.8
Q ss_pred HHhhH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCcc
Q 044630 18 VYLLN-EYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGK-FVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEE 92 (343)
Q Consensus 18 ~yl~~-~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr-~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~ 92 (343)
.|+.+ +.+-+.+-.|+++++...+..++.+..|+-.-|. |+ |+-++.+. ++|.++-......|+
T Consensus 59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pli~s~ii~~~g~llY~~l~~~~~---------- 127 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPLIVSFLIAIIGNLLYLALAYVPN---------- 127 (488)
T ss_pred hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCHHHHHHHHHHHHHHHHHHHhccc----------
Confidence 34443 4566777889999999999999999999999995 73 44445554 566655422222221
Q ss_pred ccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 044630 93 RIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTI 168 (343)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~ 168 (343)
....++.+++++.|+ |.|.. +..=+|++|---.+| |.++++....+..+|.++||.+
T Consensus 128 -----------~~~y~mL~~R~l~Gv-g~~n~-a~lR~Y~a~~s~~~d------R~rA~a~~~~~~vlg~ilGp~~ 184 (488)
T KOG2325|consen 128 -----------GVKYLMLVARILTGV-GVGNF-AVLRAYIADASTVED------RPRAFAATSGGFVLGIILGPTI 184 (488)
T ss_pred -----------chHHHHHHHHHHcCc-CcccH-HHHHHHHHhccCccc------hHHHHHHhhhHHHHHHHHhHHH
Confidence 146788899999988 76653 455677877543332 5666666555555565565554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.055 Score=54.62 Aligned_cols=152 Identities=14% Similarity=0.045 Sum_probs=81.6
Q ss_pred HHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH-HHH-HHHHHHH-HHHhhcCCCCCCCCCCcccc
Q 044630 18 VYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIV-LGF-LLGMLMV-TLTAIVPQLRPPHCTNEERI 94 (343)
Q Consensus 18 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~-~~~-~~g~~~l-~~~~~~~~~~~~~c~~~~~~ 94 (343)
-.+...+|-+....+.++++|.++..+++.++|+++++- -|+.... ++. +++.+.. .+....+..
T Consensus 39 r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~~~~~~~----------- 106 (521)
T PRK03612 39 TLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILYAAFAFQ----------- 106 (521)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 344446788888999999999999999999999887553 2222211 111 1111111 111100100
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee
Q 044630 95 HGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT 174 (343)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~ 174 (343)
......++...++.++ -.|+..|.+..+..+..++ ..++..+-.|....+|+++|.++.+++--
T Consensus 107 --------~~~~~~~~~~~~~~~~-l~G~~~Pl~~~~~~~~~~~-------~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 107 --------GLSRLLLYVLVLLIGL-LIGMEIPLLMRILQRIRDQ-------HLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred --------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccc-------chhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 0011222333345566 6666666655554432211 13445677888889999999888877543
Q ss_pred --ccc-cccchhHHHHHHHHHHHHHh
Q 044630 175 --VSW-AWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 175 --~gw-~~~F~i~~~~~~l~~~~~~~ 197 (343)
.|- +..+.++.+-++++++..+.
T Consensus 171 p~lG~~~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 171 PRLGLIRTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 443 34444444444444443333
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.076 Score=53.00 Aligned_cols=188 Identities=12% Similarity=-0.001 Sum_probs=106.5
Q ss_pred chhhhHHhhhhhHHHHHHhhHh-cCCChH------HH---H-HHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHH--
Q 044630 2 ETFERLGSFGIMAIFTVYLLNE-YNVSQA------YV---A-AKFGAWNGVADFLTVIFAFLADAYIGK-FVTIVLGF-- 67 (343)
Q Consensus 2 e~~e~~~~yg~~~~L~~yl~~~-lg~s~~------~a---~-~~~~~~~~~~~~~~l~gG~laDr~lGr-~~~i~~~~-- 67 (343)
+++.-++++.+..+.+.|..++ +|-++. ++ + .....+...+.+.+++--.+.++ +|+ |++-.++.
T Consensus 267 qffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~-~g~~k~~~~~s~~~ 345 (477)
T TIGR01301 267 TCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG-WGAGKRLWGIVNII 345 (477)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHH
Confidence 3445556666666666666643 432211 11 2 22233444445666677788888 585 55545554
Q ss_pred -HHHHHHHHHHhhcCC-CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhh
Q 044630 68 -LLGMLMVTLTAIVPQ-LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRK 145 (343)
Q Consensus 68 -~~g~~~l~~~~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~ 145 (343)
.++++...+....++ .++. ++ ++.-..++.......++...++|+ ..+.....-.+++++..++++ +
T Consensus 346 ~~~~l~~~~~i~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~l~~~~~~Gi-~~A~~~siPfal~s~~~~~~~----~ 414 (477)
T TIGR01301 346 LAICLAATVLVTYVAKNSRYY-----DG-DGESLPPPTGIKASALIVFAILGI-PLAITYSIPFALASIRSSNLG----A 414 (477)
T ss_pred HHHHHHHHHHHHhhhhccccc-----cc-cccccCcchhhHHHHHHHHHHhhH-HHHHHHHHhHHHHHHHccccC----C
Confidence 333333222211010 0000 00 000001111123445555667888 888888888899999877432 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhheeee---ccccccchhHHHHHHHHHHHHHhccce
Q 044630 146 EINSFFNWYYTTFTLVLLITSTIVAYVQT---VSWAWGFTIPTVCLFCGLVLLFAGMRI 201 (343)
Q Consensus 146 ~~~~~f~~~y~~~~iG~~ig~~~~~~l~~---~gw~~~F~i~~~~~~l~~~~~~~~~~~ 201 (343)
+.+..+++++.++.+..++..+..|.+.+ .+-...+.++++.++++.+.-+...|+
T Consensus 415 ~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 415 GQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 36889999999999998888877777555 235678888888888887766655443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.026 Score=58.44 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=53.9
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHhccc--hHHHHHHHH
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNG-VADFLTVIFAFLADAYIG--KFVTIVLGF 67 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~-~~~~~~l~gG~laDr~lG--r~~~i~~~~ 67 (343)
+++..+++++.++++.|+++.+|++..+++.+.+...+ ...++.+++|++.||+ + .|+.+.++.
T Consensus 340 ~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~ 406 (633)
T TIGR00805 340 VIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAI 406 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHH
Confidence 46778899999999999999999999999999887765 5678999999999995 7 456666555
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.16 Score=38.05 Aligned_cols=68 Identities=12% Similarity=-0.067 Sum_probs=50.8
Q ss_pred hhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q 044630 5 ERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLT 77 (343)
Q Consensus 5 e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~ 77 (343)
-||+|-. +...|.++.++|.++++.+-+...++..++.+...++.++. .+++.+..+.++..+.+...
T Consensus 7 gRFayTp----lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~m 74 (85)
T PF06779_consen 7 GRFAYTP----LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAM 74 (85)
T ss_pred HHHHHHh----HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHH
Confidence 4666654 45567788999999999999999999999999999999883 66777777764433333333
|
Note that many members are hypothetical proteins. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.78 Score=46.08 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=30.4
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 044630 23 EYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF 67 (343)
Q Consensus 23 ~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~ 67 (343)
..|.+... .....+......++.+++.++-||+ |||+.++.+.
T Consensus 324 ~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~ 366 (513)
T KOG0254|consen 324 SAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGA 366 (513)
T ss_pred hcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhH
Confidence 34555332 3334455666777778889999995 9999999987
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.013 Score=57.31 Aligned_cols=152 Identities=12% Similarity=0.093 Sum_probs=91.5
Q ss_pred HhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHH-HHHHHHHHHHhhcCCC
Q 044630 8 GSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAY---IGKFVTIVLGF-LLGMLMVTLTAIVPQL 83 (343)
Q Consensus 8 ~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~---lGr~~~i~~~~-~~g~~~l~~~~~~~~~ 83 (343)
+|--=.++++.|+. .+|++..-.+.+-..--+...+..++-|..+||. +||||-.+... ....+.+.+..+.+++
T Consensus 47 ~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDi 125 (498)
T KOG0637|consen 47 GWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADI 125 (498)
T ss_pred HHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhh
Confidence 33333455666666 4788877776665555556677788889999985 69999888776 2222222222222222
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 044630 84 RPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLL 163 (343)
Q Consensus 84 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ 163 (343)
...-|++.+ .| ........+.++..+.=+ .+-..+...-++.+|...+++.+ +| +.+++-+.+.+|..
T Consensus 126 g~~lgd~~~----~~--~~~rai~~~~lg~~LLD~-A~n~~qgp~ra~L~Dl~~~d~~~---~~--Ans~f~~f~avGnv 193 (498)
T KOG0637|consen 126 GLLLGDNER----KP--VKPRAIVLFILGFWLLDV-ANNTLQGPCRALLADLARGDAKK---TR--ANSVFSFFMAVGNV 193 (498)
T ss_pred hHHhcCCcc----cc--cchHHHHHHHHHhHHHHh-hhhhhhhhHHHHHHHhccChhhh---hc--cchhHHHHHHhcce
Confidence 110011100 01 111345566677777777 66677777889999998765321 22 77788888889988
Q ss_pred HHHhhhhee
Q 044630 164 ITSTIVAYV 172 (343)
Q Consensus 164 ig~~~~~~l 172 (343)
+|..+.+|.
T Consensus 194 LGY~~g~y~ 202 (498)
T KOG0637|consen 194 LGYALGSYL 202 (498)
T ss_pred eeeeccccc
Confidence 887777664
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.4 Score=47.46 Aligned_cols=99 Identities=12% Similarity=0.113 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHH
Q 044630 37 AWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWL 116 (343)
Q Consensus 37 ~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~ 116 (343)
+--....++.++++.+-|. +|.|+++.+++ .++...-+..+.+ +...++++-+++
T Consensus 58 iiY~~ftv~~l~~psiv~~-i~~K~~lv~ga-~~y~~f~~gfl~~-----------------------N~y~~yfssall 112 (461)
T KOG3098|consen 58 IIYAFFTVSCLFAPSIVNF-LGPKWALVIGA-TCYAAFPLGFLFP-----------------------NSYYLYFSSALL 112 (461)
T ss_pred HHHHHHHHHHHhhHHHHHH-hhHHHHHHHHh-HHHHHHHHHHHhc-----------------------chHHHHHHHHHh
Confidence 3344455667777888999 59999999887 2222222222212 457888899999
Q ss_pred HHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 044630 117 AVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITST 167 (343)
Q Consensus 117 ~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~ 167 (343)
|+ |.+..+..--.++++-..++ ++++..++.....+.+.++|..
T Consensus 113 G~-Gaallw~GqG~ylt~~st~~------tie~Nisi~Wai~~~~li~Ggi 156 (461)
T KOG3098|consen 113 GF-GAALLWTGQGGYLTSNSTRE------TIERNISIFWAIGQSSLIIGGI 156 (461)
T ss_pred hh-hHHheecccceehhhcCChh------hHHHHHHHHHHHHHHHHHhhhH
Confidence 99 99988877777666654322 3445445544444555555533
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.062 Score=53.65 Aligned_cols=55 Identities=25% Similarity=0.420 Sum_probs=47.0
Q ss_pred hhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 044630 11 GIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF 67 (343)
Q Consensus 11 g~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~ 67 (343)
.+...|..|.. ++|++.++.+.+++.--+...+.++++|++|||+ -++|.++++.
T Consensus 29 ~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgs 83 (618)
T KOG3762|consen 29 SLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGS 83 (618)
T ss_pred ccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHH
Confidence 45566777776 5999999999999999999999999999999997 7777777766
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.021 Score=55.85 Aligned_cols=163 Identities=12% Similarity=0.132 Sum_probs=92.9
Q ss_pred hHHhhhhhHHHHHHhhHhcCCChHHHHH--------HHHHHHHHHHH-HHHHHHHHHHhccchHHHHHHHH-HHHHHHHH
Q 044630 6 RLGSFGIMAIFTVYLLNEYNVSQAYVAA--------KFGAWNGVADF-LTVIFAFLADAYIGKFVTIVLGF-LLGMLMVT 75 (343)
Q Consensus 6 ~~~~yg~~~~L~~yl~~~lg~s~~~a~~--------~~~~~~~~~~~-~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~ 75 (343)
.+++|+...+.-.-+. .+|+...+... .-.+...+.++ +..++.++.|+ +|||+.-+.+. +...+. .
T Consensus 317 Diafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq~~GF~~~~i~~-~ 393 (538)
T KOG0252|consen 317 DIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQLMGFFIMTIFF-F 393 (538)
T ss_pred hhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHHHhhHHHHHHHH-H
Confidence 4567776666655554 24444333322 11222233333 45556778999 69999998887 333332 3
Q ss_pred HHhhcCCCCCCCCCCccccccccCCCCcchHHHHH-HHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHH
Q 044630 76 LTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLH-VAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWY 154 (343)
Q Consensus 76 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~-~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~ 154 (343)
+.+..++ + ..+......++ +..++-.+ |-+... -..-+|.||.+ .|+...++.
T Consensus 394 ~~~~~y~-------------~---~~~~~Gf~v~y~l~~ff~NF-GPn~tt---fivpaE~FPar------vR~t~hGIs 447 (538)
T KOG0252|consen 394 VIAGPYN-------------Q---LENTIGFVVLYSLTFFFGNF-GPNATT---FIVPAEIFPAR------VRSTCHGIS 447 (538)
T ss_pred HHcCCcc-------------c---ccccCceeehHHHHHHHHhc-CCCcee---EEeehhhchHH------HhhhhhhHH
Confidence 3333221 0 01111111222 22223333 333322 23345777643 589999998
Q ss_pred HHHHHHHHHHHHhhhheeee------ccccccchhHHHHHHHHHHHHHh
Q 044630 155 YTTFTLVLLITSTIVAYVQT------VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 155 y~~~~iG~~ig~~~~~~l~~------~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
-.+.-+|+++|.....++++ .|.+..|.+.+++++++.++.++
T Consensus 448 AA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 448 AASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred HHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence 89999999999998888876 46788888888888877665443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.38 Score=46.34 Aligned_cols=139 Identities=9% Similarity=0.037 Sum_probs=93.7
Q ss_pred hHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCccccccccC
Q 044630 21 LNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCI 99 (343)
Q Consensus 21 ~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~ 99 (343)
...+|++..+.|-+.+.-...+.+..+.-....||..|.-+....-. ..-.-.+.+-+..+
T Consensus 289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~------------------ 350 (451)
T KOG2615|consen 289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR------------------ 350 (451)
T ss_pred cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc------------------
Confidence 45789999999988887777777777777777787655433333222 11111111111111
Q ss_pred CCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee--ccc
Q 044630 100 GPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT--VSW 177 (343)
Q Consensus 100 ~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~--~gw 177 (343)
....++.+..+-++ .++...+|+..++....+.+ +|+...+++.....++-++||.+.|.+.. .+=
T Consensus 351 -----~~~~l~~~s~l~sf-~~A~~vt~Lt~Lv~~~~~~~------qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~ 418 (451)
T KOG2615|consen 351 -----TPVVLYLGSTLKSF-STASVVTCLTSLVHKYGPQS------QRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGA 418 (451)
T ss_pred -----cchhhhHHHHHHHH-HHHHhhHHHHHHHHhcCCcc------cchHHHHHHHHHHHHHHHhhhhhhheeEEEecCC
Confidence 23567888888888 88888999999888876654 38999999999999999999999988766 344
Q ss_pred cccchhHHHHHH
Q 044630 178 AWGFTIPTVCLF 189 (343)
Q Consensus 178 ~~~F~i~~~~~~ 189 (343)
+..+.....+.+
T Consensus 419 ~~a~~~~~~L~~ 430 (451)
T KOG2615|consen 419 QPAYIAWGALLL 430 (451)
T ss_pred CceeeehHHHHH
Confidence 555555444433
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.26 Score=48.96 Aligned_cols=122 Identities=14% Similarity=0.167 Sum_probs=90.4
Q ss_pred HHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCccc
Q 044630 17 TVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEER 93 (343)
Q Consensus 17 ~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~~ 93 (343)
.+|+...++++..+.+...+..+....+..++...+--+.+|-++++.+|+ .++.....+. .
T Consensus 265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~---~------------ 329 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA---T------------ 329 (463)
T ss_pred EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh---c------------
Confidence 466777899999999999999999999999998844444479999888877 4444433332 1
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhhee
Q 044630 94 IHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYV 172 (343)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l 172 (343)
+.|..+.+..+. . ..+...|...++.+.+.++++ +++.+++....-.+.+.+++.+-+.+
T Consensus 330 -----------~~w~~~~~~v~~-~-~~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 330 -----------ETWMMFAAGVVV-A-LAGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred -----------cchhhhHHHHHH-H-hhcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 245556655544 4 477788888999988877543 78999999988888888888775544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.4 Score=43.13 Aligned_cols=148 Identities=13% Similarity=0.198 Sum_probs=82.4
Q ss_pred HHHHHHhhHh-cCCChHHHHHH-HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH---HHHHHHHHHhhcCCCCCCCC
Q 044630 14 AIFTVYLLNE-YNVSQAYVAAK-FGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFL---LGMLMVTLTAIVPQLRPPHC 88 (343)
Q Consensus 14 ~~L~~yl~~~-lg~s~~~a~~~-~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~---~g~~~l~~~~~~~~~~~~~c 88 (343)
++++.|++++ .|++..+...- .-+++=......++...+.|. +|.|.+++++.+ +..+++... +
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~---~------- 92 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFG---T------- 92 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHH---C-------
Confidence 4677899987 89999887644 444555555667788999999 588888888762 222222211 1
Q ss_pred CCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHH----HHHHH
Q 044630 89 TNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFT----LVLLI 164 (343)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~----iG~~i 164 (343)
+...+-+.-+.-|+ +. ++-.++-+-.|...|++ + -.+.-+..-.+.- +|+++
T Consensus 93 ----------------sv~~mq~~q~~yg~-~~----a~evay~sYiys~v~~~-~--yq~vts~~raa~l~g~~~s~~l 148 (412)
T PF01770_consen 93 ----------------SVLAMQLMQFFYGL-AT----AAEVAYYSYIYSVVDKE-H--YQKVTSYTRAATLVGRFISSLL 148 (412)
T ss_pred ----------------cHHHHHHHHHHHHH-HH----HHHHHHHHHheeecCHH-H--HHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444444444 32 33445556666655432 2 2333333333443 44444
Q ss_pred HHhhhheeeeccccccchhHHHHHHHHHHHHHh
Q 044630 165 TSTIVAYVQTVSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 165 g~~~~~~l~~~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
|.++... ...++...+.+......+++++-++
T Consensus 149 gQllvs~-~~~sy~~L~~isl~~~~~a~~~~~f 180 (412)
T PF01770_consen 149 GQLLVSF-GGVSYFQLNYISLASVSLALLIALF 180 (412)
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4433321 1156777777777777666665433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.52 Score=46.41 Aligned_cols=142 Identities=9% Similarity=0.016 Sum_probs=73.8
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------chHHHHHHHHHHH----HHHHHHHhhcCCCCCCCCCCccc
Q 044630 24 YNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYI------GKFVTIVLGFLLG----MLMVTLTAIVPQLRPPHCTNEER 93 (343)
Q Consensus 24 lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~l------Gr~~~i~~~~~~g----~~~l~~~~~~~~~~~~~c~~~~~ 93 (343)
.|.+..+.....+++..+..++.++||.++|++- ||.+.=-+.+.+| ..++.+....+
T Consensus 278 ~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~------------ 345 (493)
T KOG1330|consen 278 IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFT------------ 345 (493)
T ss_pred hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhh------------
Confidence 3455555556667788889999999999999931 1111111111111 11111111101
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHH-HHHHHHHHhhhhee
Q 044630 94 IHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTF-TLVLLITSTIVAYV 172 (343)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~-~iG~~ig~~~~~~l 172 (343)
.....+.+.++++|.+..-..++.......+..+++ .|..++.+-+... -+|.+-+|.++|.+
T Consensus 346 ----------~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~------~Rt~a~a~~~~~~h~fgd~~~p~ivGil 409 (493)
T KOG1330|consen 346 ----------SSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPS------RRTTAYALDTVFEHIFGDAASPYIVGIL 409 (493)
T ss_pred ----------hHHHHHHHHHHHHHHHHHhcccccccceeeEecCcc------cccHHHHHHHHHHHHhccCCCcceehhH
Confidence 011222233333333222223333344455555543 3888888877544 45555556688888
Q ss_pred ee--ccccc----------cchhHHHHHHHHHH
Q 044630 173 QT--VSWAW----------GFTIPTVCLFCGLV 193 (343)
Q Consensus 173 ~~--~gw~~----------~F~i~~~~~~l~~~ 193 (343)
+| .||+. ....++...+.++.
T Consensus 410 sd~l~g~~~~~~~~~~~~~s~~~~a~~l~~a~~ 442 (493)
T KOG1330|consen 410 SDKLRGYKPAGGIDSVLQTSLRLCAALLAKALI 442 (493)
T ss_pred HHHhhCCCccccccccccchhhhhHHHHHHHHH
Confidence 88 77773 44455555555543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.17 Score=50.65 Aligned_cols=129 Identities=12% Similarity=0.000 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHH
Q 044630 40 GVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAV 118 (343)
Q Consensus 40 ~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~ 118 (343)
++-.+..++.++|-.+ +|+-+++.+++ ..+.=.+.+|-. . +.|.....=.+.|+
T Consensus 417 ~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L-~-----------------------n~W~vLPieilqgi 471 (618)
T KOG3762|consen 417 AGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYL-Q-----------------------NPWMVLPIEILQGI 471 (618)
T ss_pred cchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHh-c-----------------------CchheeeHHHHHHH
Confidence 3344566677899999 59999999887 222222233321 1 34555555677888
Q ss_pred hccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHH-HHHHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHH
Q 044630 119 GGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYY-TTFTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 119 ~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y-~~~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
-.|.++.++.+++.+..|++- +.++-++.. ..-.+|-.+|.+++|.+.+ +|=+..|-+.+++.++.++.+.
T Consensus 472 -t~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 472 -THALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred -HHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988652 233333322 1223344444555566556 6768888877777776766665
Q ss_pred hccc
Q 044630 197 AGMR 200 (343)
Q Consensus 197 ~~~~ 200 (343)
.-.+
T Consensus 545 ~iq~ 548 (618)
T KOG3762|consen 545 SIQL 548 (618)
T ss_pred Hhhh
Confidence 5443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.34 Score=47.51 Aligned_cols=41 Identities=12% Similarity=-0.016 Sum_probs=33.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 044630 24 YNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVL 65 (343)
Q Consensus 24 lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~ 65 (343)
-|++...+|.+...-.+...+++++.|.++||. ..+|....
T Consensus 296 sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~ 336 (480)
T KOG2563|consen 296 SGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTL 336 (480)
T ss_pred ccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHH
Confidence 477778899988888999999999999999996 66555443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=91.77 E-value=4.6 Score=40.29 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=32.5
Q ss_pred hhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 128 SIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 128 ~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
.-++..|.+..+ +-.++|+.+..+.|+|.++|+.+..++.
T Consensus 150 FW~fandi~t~~------qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 150 FWGFANQITTID------EAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888643 3678999999999999999998887764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.19 E-value=2.8 Score=42.01 Aligned_cols=103 Identities=9% Similarity=0.001 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhc
Q 044630 42 ADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGG 120 (343)
Q Consensus 42 ~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G 120 (343)
........+.+-|+. |||.....+. ..+..++. ....+.. ...+.......+... +
T Consensus 363 ~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~-~~~~~~~--------------------~~~~~~~~~~~~~~~-~ 419 (521)
T KOG0255|consen 363 ELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLL-FGWLPDD--------------------LGGWLHWILPLLGKF-F 419 (521)
T ss_pred HhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHH-HHHhhcc--------------------chhHHHHHHHHHHHH-H
Confidence 334444558889994 9999999888 33333333 2222210 110111111111222 3
Q ss_pred cCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 121 AGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 121 ~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
.+...-....+.+|++++. .|..+.+.......+|++++|.+.....
T Consensus 420 ~~~~~~~~~~~~~el~pt~------~r~~~~~~~~~~~~~~~i~ap~~~~~~~ 466 (521)
T KOG0255|consen 420 IGSAFNLIFLYSAELIPTV------VRNTAVGAISAAARLGSILAPLFPLLLR 466 (521)
T ss_pred HHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445578888999864 3788888888888999999887754443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=90.56 E-value=2.5 Score=43.37 Aligned_cols=137 Identities=14% Similarity=0.113 Sum_probs=75.9
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH-HHHHHHHHHHHHhh
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQ---AYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVL-GFLLGMLMVTLTAI 79 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~---~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~-~~~~g~~~l~~~~~ 79 (343)
.+...||++..+.|......++-+. ..++.....+..+..++.++.|++.-+ ++|.|-.++ +..+....+...+.
T Consensus 321 i~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~-ir~~Kw~li~~~~~~ta~~Gama~ 399 (599)
T PF06609_consen 321 ISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK-IRHIKWQLIFGSVLMTAFCGAMAA 399 (599)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777766665555443 245556666777777888888899877 588776654 33222211111111
Q ss_pred cCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHH
Q 044630 80 VPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFT 159 (343)
Q Consensus 80 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~ 159 (343)
.++ ++.+. .+...++.++ |.|+..... .+.-|+.-.| +..+...++......
T Consensus 400 ---~~~----------------~n~~~--~i~~~~l~g~-giG~~~~~~--~~~~ql~~p~----~~ig~a~gL~~s~R~ 451 (599)
T PF06609_consen 400 ---VRP----------------DNKNA--AIAFLVLAGF-GIGGILVPA--IVIAQLIVPD----EDIGTATGLTGSIRS 451 (599)
T ss_pred ---ccC----------------CCcch--HHHHHHHHHH-hHHHHHHHH--HHeeEeeeCc----hHHHHHHHHHHHHHH
Confidence 111 11122 2233455666 666655433 3333443222 137888888777778
Q ss_pred HHHHHHHhhh
Q 044630 160 LVLLITSTIV 169 (343)
Q Consensus 160 iG~~ig~~~~ 169 (343)
+|+.+|..+.
T Consensus 452 ~GGsIg~aIy 461 (599)
T PF06609_consen 452 IGGSIGYAIY 461 (599)
T ss_pred HhhHHHHHHH
Confidence 8887776653
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=5.6 Score=39.97 Aligned_cols=117 Identities=12% Similarity=0.037 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchH-H------HHHHHH---HHHHHHHHHHhhcCCCCCCCCCCccccccccCC
Q 044630 31 VAAKFGAWNGVADFLTVIFAFLADAYIGKF-V------TIVLGF---LLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIG 100 (343)
Q Consensus 31 a~~~~~~~~~~~~~~~l~gG~laDr~lGr~-~------~i~~~~---~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~ 100 (343)
++...+.......+..++.+++-.| ++|| | =+.+|. .+|++.+.+...... .
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~-l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~-----------------~ 371 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKE-SVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSA-----------------M 371 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHH-HhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC-----------------C
Confidence 4445556666666667777777666 3332 1 123333 344444444332110 0
Q ss_pred CCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHH-HHHHHHHHHhhhhee
Q 044630 101 PNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTT-FTLVLLITSTIVAYV 172 (343)
Q Consensus 101 ~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~-~~iG~~ig~~~~~~l 172 (343)
....+.++++....+..+ |.=...|.-.+++++.-|++ .++..++.++.. ..+|..++..+.++.
T Consensus 372 ~~~~s~~wl~~~~~~~t~-gEl~~sPvgls~~~~laP~~------~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 372 YGHSSLPLMVLGLAVMGF-AELFIDPVAMSQITRIEIPG------VTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred CCCcCHHHHHHHHHHHHH-HHHHHChHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011345667777788899 99999999999999997643 478888888763 357766666655544
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.088 Score=53.42 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHhc-cchHHHHHHHH
Q 044630 3 TFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNG-VADFLTVIFAFLADAY-IGKFVTIVLGF 67 (343)
Q Consensus 3 ~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~-~~~~~~l~gG~laDr~-lGr~~~i~~~~ 67 (343)
..|.+..-|+.+++|-|++.+++++..+|+.+.++..+ ...++.++||++-.|+ ++.|+++.+..
T Consensus 315 ~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~ 381 (539)
T PF03137_consen 315 VFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCI 381 (539)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHH
Confidence 46788889999999999999999999999999887666 5668899999999997 45555555544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.91 E-value=3.1 Score=40.29 Aligned_cols=65 Identities=25% Similarity=0.307 Sum_probs=41.9
Q ss_pred hhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccchHHHHHHHH--HHHHHHHHHHhh
Q 044630 11 GIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLAD-----AYIGKFVTIVLGF--LLGMLMVTLTAI 79 (343)
Q Consensus 11 g~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laD-----r~lGr~~~i~~~~--~~g~~~l~~~~~ 79 (343)
|....+|..|+ .-|.|-++.+....++ .=+-.-++++.+.| | +||||+-++=+ ++|..++.++..
T Consensus 48 GL~~~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~-~GrrksWvvp~q~llG~~mllLs~~ 119 (510)
T KOG3574|consen 48 GLIGAIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKR-FGRRKSWVVPCQYLLGLFMLLLSYL 119 (510)
T ss_pred hHhhhhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHh-hccccceeeehHHHHHHHHHHHhhC
Confidence 45553334443 4566666654432222 34566778999999 8 59999988776 788887777654
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.59 E-value=1.1 Score=46.63 Aligned_cols=66 Identities=12% Similarity=0.169 Sum_probs=54.1
Q ss_pred chhhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHH-HHHHHHHHHHHHHhc-cchHHHHHHHH
Q 044630 2 ETFERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGV-ADFLTVIFAFLADAY-IGKFVTIVLGF 67 (343)
Q Consensus 2 e~~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~-~~~~~l~gG~laDr~-lGr~~~i~~~~ 67 (343)
..+|..++-|..+++|-||.+++|.+...|..+.+.+.+. ..++.++||++--|+ +.-|.+..+..
T Consensus 401 ~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~ 468 (735)
T KOG3626|consen 401 SVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVI 468 (735)
T ss_pred HHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHH
Confidence 3578999999999999999999999999999998776554 557788999999886 55565655554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=85.23 E-value=17 Score=35.93 Aligned_cols=134 Identities=12% Similarity=0.077 Sum_probs=82.2
Q ss_pred hhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH--HHHHHHHHh-hcCCCCCCCC
Q 044630 12 IMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLL--GMLMVTLTA-IVPQLRPPHC 88 (343)
Q Consensus 12 ~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~--g~~~l~~~~-~~~~~~~~~c 88 (343)
.-..++.|+... |++....+..-+.-.+....+.++..++-+| +|--|+=.++... ..+.+.... +.|.
T Consensus 277 f~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~------ 348 (432)
T PF06963_consen 277 FGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPG------ 348 (432)
T ss_pred CcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 345567788877 9999999888888888888999999999999 5999988888711 111112222 2221
Q ss_pred CCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 044630 89 TNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTI 168 (343)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~ 168 (343)
+ +.+..+...++.+..+-=+ |.=++.-+...++-|..|++ +|+.+.+.-....|+--++...+
T Consensus 349 ~----------~~~~~s~~~l~~gi~~SR~-GLW~fDL~~~qi~Qe~V~~~------~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 349 S----------PFSSISAYLLLGGIALSRI-GLWSFDLAVTQIMQENVPES------ERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred C----------CchhhHHHHHHHHHHHHHH-HHHhhhHHHHHhhcccCCHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011234445545444334 44445555555555544432 48888888777777766665544
Q ss_pred hh
Q 044630 169 VA 170 (343)
Q Consensus 169 ~~ 170 (343)
+-
T Consensus 412 ~i 413 (432)
T PF06963_consen 412 TI 413 (432)
T ss_pred Hh
Confidence 33
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 343 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 3e-42 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 3e-06 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 3e-42
Identities = 61/350 (17%), Positives = 121/350 (34%), Gaps = 45/350 (12%)
Query: 1 NETFERLGSFGIMAIFTVYLLNEYNVS------QAYVAAKFGAWNGVADFLTVIFAFLAD 54
+E ER +G+ I T +L+ +S A F ++ F ++ ++AD
Sbjct: 20 SEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD 79
Query: 55 AYIGKFVTIVLG---FLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHV 111
+ GK+ TI+ + +G + + + + +
Sbjct: 80 RFFGKYNTILWLSLIYCVGHAFLAIFE-------------------------HSVQGFYT 114
Query: 112 AMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAY 171
+F +A+G +GGI+P F DQFD +++K + F+ +Y T S +
Sbjct: 115 GLFLIALG-SGGIKPLVSSFMGDQFD-QSNKSLAQ--KAFDMFYFTINFGSFFASLSMPL 170
Query: 172 VQ-TVSWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQL 230
+ A F IP V +F V + G + Y+ + E + V A +
Sbjct: 171 LLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGK 230
Query: 231 QSVGDGIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIIDNND-EIKQDGICMNPRRLCSIQ 289
++G + + + T L A ++ R+
Sbjct: 231 GNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDA 290
Query: 290 QVEEVNWLMIIVPIWASAIISF-LPMQIGTFVVGQAMRMDRHLGPKFEIP 338
V+ V ++ I+ ++A + L Q + + QA M +
Sbjct: 291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP----QWFE 336
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 40/211 (18%)
Query: 2 ETFERLGSFGIMAIFTVYLLNEYNV-----SQAYVAAKFGAWNGVADFLTVIFAFLADAY 56
E +ER +G+ AI Y+ + ++A A+ + + I F+AD
Sbjct: 22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRI 81
Query: 57 IGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWL 116
IG + G +L ML + A+ + L ++ +
Sbjct: 82 IGARPAVFWGGVLIMLGHIVLALPFGA-----------------------SALFGSIILI 118
Query: 117 AVGGAGGIRPCSIPFAVDQF---DSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173
+G G ++P + D R D G F+ + L I IV Q
Sbjct: 119 IIG-TGFLKPNVSTLVGTLYDEHDRRRDAG-------FSIFVFGINLGAFIAPLIVGAAQ 170
Query: 174 -TVSWAWGFTIPTVCLFCGLVLLFAGMRIYV 203
+ F++ + +F GL++ + G + +
Sbjct: 171 EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTL 201
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 343 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.83 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.78 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.53 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.46 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.39 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.32 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.25 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.07 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.03 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.94 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.91 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.8 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.47 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 97.38 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=182.85 Aligned_cols=295 Identities=19% Similarity=0.231 Sum_probs=183.0
Q ss_pred chhhhHHhhhhhHHHHHHhhHhcC------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 044630 2 ETFERLGSFGIMAIFTVYLLNEYN------VSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVT 75 (343)
Q Consensus 2 e~~e~~~~yg~~~~L~~yl~~~lg------~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~ 75 (343)
++++++++|++...++.|+++++| ++..+++.+.+++.++..++.+++|+++||++|||+++.++.++..+...
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 468899999999999999999999 99999999999999999999999999999944999999888722222122
Q ss_pred HHhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHH
Q 044630 76 LTAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYY 155 (343)
Q Consensus 76 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y 155 (343)
+..+.+ .+.+.+++++++.|+ |.|...++..++++|.+++++ +..+.+.+++++
T Consensus 101 ~~~~~~----------------------~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~ 154 (524)
T 2xut_A 101 FLAIFE----------------------HSVQGFYTGLFLIAL-GSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFY 154 (524)
T ss_dssp HHHHTS----------------------SCHHHHHHHHHHHHH-HHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHH
T ss_pred HHHHhc----------------------ccHHHHHHHHHHHHH-hccccchhHHHHHHHHcCccc---hHHHHHHHHHHH
Confidence 222211 135678888999999 999999999999999998653 223467788899
Q ss_pred HHHHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccceEEEecCCCCchhHHHHHHHHHHHhhcccccCCC
Q 044630 156 TTFTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQVFVVAYKKRRHQLQSVG 234 (343)
Q Consensus 156 ~~~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~ 234 (343)
.+.++|.++++.+.+++.+ .||+..|.+.++..+++++.++..++++++.+|++++..+..+.+..+.|+++...+. .
T Consensus 155 ~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 233 (524)
T 2xut_A 155 FTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGN-I 233 (524)
T ss_dssp HHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHH-H
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCc-c
Confidence 9999999999999999988 8999999999888877777666655555444444444334444444444443211000 0
Q ss_pred CcccccCCcccccCCcCCCCchhhhhhhhhhhcc--CcccccccCCCCCCC-------ccccchhHHHHHHHHhHHHHHH
Q 044630 235 DGIFYVPPLKKTLGSKLPLTSSQFRFLNKAAIID--NNDEIKQDGICMNPR-------RLCSIQQVEEVNWLMIIVPIWA 305 (343)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~--~~~~~~~~~~~~~~~-------~~~~~~~ve~~k~~~~~l~l~~ 305 (343)
. ...+............+. +....+..+.... ..+. ....+| +.++++++++.|++++.+++++
T Consensus 234 ~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (524)
T 2xut_A 234 G-LVLALIGGVSAAYALVNI-PTLGIVAGLCCAMVLVMGF-----VGAGASLQLERARKSHPDAAVDGVRSVLRILVLFA 306 (524)
T ss_dssp H-HHHHHHHHHHHHHTGGGT-TTTCSSHHHHHHHHHHHHH-----HHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHT
T ss_pred c-hhhhhhhhhhhhhhhccc-chhhhhhhhhhhhhhhhcc-----cccchhhHHhhhhccccHhHHHHHHHHHHHHHHHH
Confidence 0 000000000000000000 0000000000000 0000 000112 1112334566788888899999
Q ss_pred HHHHHHHhh-cchhHHHHHHHhcccC
Q 044630 306 SAIISFLPM-QIGTFVVGQAMRMDRH 330 (343)
Q Consensus 306 ~~i~f~~~~-Q~~t~~~~qa~~md~~ 330 (343)
....++..+ |..+.+..++.++|.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (524)
T 2xut_A 307 LVTPFWSLFDQKASTWILQANDMVKP 332 (524)
T ss_dssp TSHHHHTTTSSTTTHHHHHHHHSCCC
T ss_pred HHHHHHHHHhccchhhHHhHHhcCCC
Confidence 999999999 9888888888777654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-18 Score=166.85 Aligned_cols=173 Identities=21% Similarity=0.333 Sum_probs=144.6
Q ss_pred chhhhHHhhhhhHHHHHHhhHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 044630 2 ETFERLGSFGIMAIFTVYLLNE-----YNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTL 76 (343)
Q Consensus 2 e~~e~~~~yg~~~~L~~yl~~~-----lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~ 76 (343)
.++++++||++..+++.|++++ +|++..+++.+.+.+.++..++.+++|+++||++|||+++.++.++..+...+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (491)
T 4aps_A 22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV 101 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 4688999999999999999998 99999999999999999999999999999999339999999987222222222
Q ss_pred HhhcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHH
Q 044630 77 TAIVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYT 156 (343)
Q Consensus 77 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~ 156 (343)
.++.+ +.+.+++++++.|+ |.|...+...++++|.+++++ +.|+.++++++.
T Consensus 102 ~~~~~-----------------------~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~ 153 (491)
T 4aps_A 102 LALPF-----------------------GASALFGSIILIII-GTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVF 153 (491)
T ss_dssp HHSCC-----------------------STTHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSCT----THHHHHHHHHHH
T ss_pred HHHhh-----------------------hHHHHHHHHHHHHH-HHHhccchHHHHHHHHcCccc----ccceeeehHHHH
Confidence 22211 35678889999999 999999999999999998653 247889999999
Q ss_pred HHHHHHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhccceE
Q 044630 157 TFTLVLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAGMRIY 202 (343)
Q Consensus 157 ~~~iG~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~~~~~ 202 (343)
+.++|..++|.+++++.+ .||++.|.+.++..++++++++...+++
T Consensus 154 ~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 154 GINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999988 9999999998888777777666554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=134.92 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=122.3
Q ss_pred hHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCC
Q 044630 13 MAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIVPQLRPPHCT 89 (343)
Q Consensus 13 ~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~~~~~~~~c~ 89 (343)
...+..++.+++|++..+.+.+.+.+..+..++.+++|+++||+ |||+++.++. .++.++.......+
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~-------- 115 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEIM-------- 115 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhccccc--------
Confidence 34444567788999999999999999999999999999999995 9999999987 33333322112212
Q ss_pred CccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044630 90 NEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIV 169 (343)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~ 169 (343)
+.+.+++++++.|+ |.|...+...++++|.+++++ |++.++++..+.++|.++++.+.
T Consensus 116 ---------------~~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~ 173 (438)
T 3o7q_A 116 ---------------NYTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_dssp ---------------CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------cHHHHHHHHHHHHh-hHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999 999999999999999998653 88889999999999999999999
Q ss_pred heee-e-cc-------------------------ccccchhHHHHHHHHHHHHH
Q 044630 170 AYVQ-T-VS-------------------------WAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 170 ~~l~-~-~g-------------------------w~~~F~i~~~~~~l~~~~~~ 196 (343)
+++. + .+ |++.|.+.++..++..++++
T Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9987 5 43 99999776665554444443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=130.98 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=119.7
Q ss_pred hhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhh-cCCCCCCC
Q 044630 12 IMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAI-VPQLRPPH 87 (343)
Q Consensus 12 ~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~-~~~~~~~~ 87 (343)
+...++ ++.+++ ++..+.+.+.+++.++..++.+++|+++||+ |||+++.++. .++.++..+... .+
T Consensus 47 ~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~------ 117 (451)
T 1pw4_A 47 FALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS------ 117 (451)
T ss_dssp HHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS------
T ss_pred HHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhccc------
Confidence 334444 444567 9999999999999999999999999999995 9999999887 233332222000 12
Q ss_pred CCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 044630 88 CTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITST 167 (343)
Q Consensus 88 c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~ 167 (343)
+.+.+++++++.|+ |.|...+...++++|.++++ +|++.++++..+.++|.++++.
T Consensus 118 -----------------~~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~ 173 (451)
T 1pw4_A 118 -----------------SIAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPL 173 (451)
T ss_dssp -----------------SSSHHHHHHHHHHH-HHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHH
T ss_pred -----------------cHHHHHHHHHHHHH-HhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHH
Confidence 34578888999999 99999999999999999754 3899999999999999999999
Q ss_pred hhheeee-cc-ccccchhHHHHHHHHHHHH
Q 044630 168 IVAYVQT-VS-WAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 168 ~~~~l~~-~g-w~~~F~i~~~~~~l~~~~~ 195 (343)
+++++.+ .| |++.|.+.+++.++..++.
T Consensus 174 ~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~ 203 (451)
T 1pw4_A 174 LFLLGMAWFNDWHAALYMPAFCAILVALFA 203 (451)
T ss_dssp HHHHHHHHTCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9998777 88 9999999887766554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-13 Score=129.72 Aligned_cols=155 Identities=14% Similarity=0.157 Sum_probs=122.8
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPP 86 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~ 86 (343)
++.......++. +.+++|.+..+.+.+.+.+.....++.+++|+++||+ |||+++.++..+..+...+....
T Consensus 14 ~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------ 85 (375)
T 2gfp_A 14 MAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVTT------ 85 (375)
T ss_dssp HHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHh------
Confidence 334444444444 4567999999999999999999999999999999995 99999998872222111122111
Q ss_pred CCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 044630 87 HCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITS 166 (343)
Q Consensus 87 ~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~ 166 (343)
.+.+.+++++++.|+ +.+...+...+++.|.+++++ |++.++++..+.++|..+++
T Consensus 86 -----------------~~~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~ 141 (375)
T 2gfp_A 86 -----------------SSLTVLIAASAMQGM-GTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAP 141 (375)
T ss_dssp -----------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHH
T ss_pred -----------------ccHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhH
Confidence 146778889999999 999999999999999987543 78888999999999999999
Q ss_pred hhhheeee-ccccccchhHHHHHHHHHH
Q 044630 167 TIVAYVQT-VSWAWGFTIPTVCLFCGLV 193 (343)
Q Consensus 167 ~~~~~l~~-~gw~~~F~i~~~~~~l~~~ 193 (343)
.+.+++.+ .||+..|.+.++..++..+
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 142 LIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999988 8999999988877665554
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=118.36 Aligned_cols=166 Identities=14% Similarity=0.102 Sum_probs=132.5
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHH-HHHHHHhhc
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYI--GKFVTIVLGFLLGM-LMVTLTAIV 80 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~l--Gr~~~i~~~~~~g~-~~l~~~~~~ 80 (343)
+..++++++..+++.|+++.+|++..+++.+.+...++..++.+++|+++|| + |||+.+.++..+.. +.+.+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (451)
T 1pw4_A 263 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMN 341 (451)
T ss_dssp HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence 4456778889999999999999999999999999999999999999999999 7 99988877762222 222222111
Q ss_pred CCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH
Q 044630 81 PQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL 160 (343)
Q Consensus 81 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i 160 (343)
+ ..+.+.+.+..++.|+ +.++..+...++..|.++++ .|++++++++...++
T Consensus 342 ~---------------------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 342 P---------------------AGNPTVDMICMIVIGF-LIYGPVMLIGLHALELAPKK------AAGTAAGFTGLFGYL 393 (451)
T ss_dssp C---------------------TTCHHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTT------HHHHHHHHHHHHHHH
T ss_pred c---------------------ccCHHHHHHHHHHHHH-HHhchHHHHHHHHHHHhchh------hhhhHHHHHHHHHHH
Confidence 1 1134566677778888 88888888889999998764 389999999999999
Q ss_pred -HHHHHHhhhheeee-ccccccchhHHHHHHHHHHHHHhc
Q 044630 161 -VLLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFAG 198 (343)
Q Consensus 161 -G~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~~ 198 (343)
|..+++.+.+++.+ .||+..|.+.+++.+++.+..+..
T Consensus 394 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 899999999888877776665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-10 Score=111.93 Aligned_cols=158 Identities=8% Similarity=0.021 Sum_probs=118.2
Q ss_pred hhhHHhhhhhHHHHHH-hhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCC
Q 044630 4 FERLGSFGIMAIFTVY-LLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQ 82 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~y-l~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~ 82 (343)
+...+++++..+++.| +++.+|++..+++...+.+.++..++.+++|+++|| +|||+.+.++.++..+.+.+....+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~- 346 (438)
T 3o7q_A 269 CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG- 346 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHcC-
Confidence 3445677888999999 888889999999999999999999999999999999 5999999888733333222222211
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVL 162 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~ 162 (343)
+.+ ......+.++ +.+...|...++..|.++++ ++.+.++.. ...+|+
T Consensus 347 ----------------------~~~-~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~g~ 394 (438)
T 3o7q_A 347 ----------------------GHV-GLIALTLCSA-FMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTIIGG 394 (438)
T ss_dssp ----------------------HHH-HHHHHHHHHH-HHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTTHHH
T ss_pred ----------------------CcH-HHHHHHHHHH-HHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHHHHH
Confidence 122 3344577888 88888999999988888632 334444443 566999
Q ss_pred HHHHhhhheeee-cc-ccccchhHHHHHHHHHHHH
Q 044630 163 LITSTIVAYVQT-VS-WAWGFTIPTVCLFCGLVLL 195 (343)
Q Consensus 163 ~ig~~~~~~l~~-~g-w~~~F~i~~~~~~l~~~~~ 195 (343)
.++|.+.|++.+ .| ++..|.+.+++.++.++..
T Consensus 395 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3o7q_A 395 GIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_dssp HHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999 77 9999998777665554433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-10 Score=110.04 Aligned_cols=152 Identities=7% Similarity=-0.026 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcchHH
Q 044630 28 QAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRNQLA 107 (343)
Q Consensus 28 ~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 107 (343)
....+.+.+.+.++..++++++|+++||+ |||+++.++.++-.+.-.++++.+..... +. ....-...-..+.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~-~~----~~~~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTS-IN----PDNTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSC-SS----SSSSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhh-hc----chhHHHHHHhhhHH
Confidence 34566778888999999999999999995 99999999872222211222221210000 00 00000000013578
Q ss_pred HHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee---------cccc
Q 044630 108 FLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT---------VSWA 178 (343)
Q Consensus 108 ~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~---------~gw~ 178 (343)
.++++|++.|+ |.|+..+..+.+++|..|++ .|++..+++..+..+|.+++..+...+.. .+|+
T Consensus 128 ~l~~~R~l~G~-g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4gc0_A 128 EFVIYRIIGGI-GVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWR 200 (491)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhH
Confidence 89999999999 99999999999999998753 37888888888888888888776554332 3467
Q ss_pred ccchhHHHHHHHHH
Q 044630 179 WGFTIPTVCLFCGL 192 (343)
Q Consensus 179 ~~F~i~~~~~~l~~ 192 (343)
..+.+..+..++.+
T Consensus 201 ~~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 201 YMFASECIPALLFL 214 (491)
T ss_dssp HHHHTTHHHHHHHH
T ss_pred HHhhhhhhhhhhhh
Confidence 77766665544433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-10 Score=109.61 Aligned_cols=158 Identities=5% Similarity=-0.012 Sum_probs=106.5
Q ss_pred hhhhhHHHHHHhhHhcCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044630 9 SFGIMAIFTVYLLNEYNVS---QAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRP 85 (343)
Q Consensus 9 ~yg~~~~L~~yl~~~lg~s---~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~ 85 (343)
|+.....++.|+.+.++.. ....+...++..+...++.+++|+++||+ |||+++.++..+..+.+.+.++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~---- 310 (417)
T 2cfq_A 236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT---- 310 (417)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 3444456778887766532 33445555556666778889999999995 999998877622222222222211
Q ss_pred CCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHH-HHHHHHHHHH
Q 044630 86 PHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWY-YTTFTLVLLI 164 (343)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~-y~~~~iG~~i 164 (343)
+.+.+.+...+.++ +.+...+...++.+|.+|++ .|++.+++. ..+.++|+.+
T Consensus 311 -------------------~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~ 364 (417)
T 2cfq_A 311 -------------------SALEVVILKTLHMF-EVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp -------------------SHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHH
T ss_pred -------------------cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHH
Confidence 23344445555566 55555566678899988743 478888884 5677899999
Q ss_pred HHhhhheeee-ccccccchhHHHHHHHHHHHHHh
Q 044630 165 TSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 165 g~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
+|.+.|++.+ .|++..|.+.+++.+++.++.+.
T Consensus 365 gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988 88888998888877777665544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-11 Score=115.83 Aligned_cols=158 Identities=13% Similarity=0.059 Sum_probs=100.6
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH-HHH--HHHHHHhhcCCC
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFL-LGM--LMVTLTAIVPQL 83 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~-~g~--~~l~~~~~~~~~ 83 (343)
+++..+.+.++.|+++++|++..+++.+.+.+..+..++.+++|+++||+ ||||++.++.. .+. ..+......+.
T Consensus 21 ~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~- 98 (417)
T 2cfq_A 21 FIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFGPL- 98 (417)
T ss_dssp HHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34455567899999999999999999999999999999999999999995 99999998762 111 11111111000
Q ss_pred CCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 044630 84 RPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLL 163 (343)
Q Consensus 84 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ 163 (343)
....+..++.+.++ +.|...+...+...+..++ ..+.++..++......++|..
T Consensus 99 ---------------------~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~g~~ 152 (417)
T 2cfq_A 99 ---------------------LQYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEK----VSRRSNFEFGRARMFGCVGWA 152 (417)
T ss_dssp ---------------------HHTTCCHHHHGGGS-STTHHHHTTHHHHHHHHHH----HHHHHTCCHHHHSSSTTTHHH
T ss_pred ---------------------HHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH----hhhhcccchHHHHHHHHHHHH
Confidence 00001223333334 4443333333333333221 112345556666667789999
Q ss_pred HHHhhhheeeeccccccchhHHHHHHHHH
Q 044630 164 ITSTIVAYVQTVSWAWGFTIPTVCLFCGL 192 (343)
Q Consensus 164 ig~~~~~~l~~~gw~~~F~i~~~~~~l~~ 192 (343)
++|.+++++.+.+|+..|.+.++..++.+
T Consensus 153 ~~~~l~~~l~~~~~~~~f~~~~~~~~~~~ 181 (417)
T 2cfq_A 153 LGASIVGIMFTINNQFVFWLGSGCALILA 181 (417)
T ss_dssp HHHHHHHHHHHHCSHHHHTTTTTTTTTHH
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 99999988877789999987766544333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-09 Score=104.27 Aligned_cols=170 Identities=11% Similarity=0.029 Sum_probs=119.7
Q ss_pred HHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH-----HHH---HHHHHHHHHHh
Q 044630 7 LGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIV-----LGF---LLGMLMVTLTA 78 (343)
Q Consensus 7 ~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~-----~~~---~~g~~~l~~~~ 78 (343)
..+......++.|+.+.++.+..+++...........++.++.|+++||+ |||+... ++. .++.+++....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
T 4aps_A 297 AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFAGLSFLLMAIPG 375 (491)
T ss_dssp HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888999998888877777788888888889999999999994 9886543 333 12222211111
Q ss_pred hcCCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHH
Q 044630 79 IVPQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTF 158 (343)
Q Consensus 79 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~ 158 (343)
.... .....+.+.+.+...+.++ |.+...+...++..|.+|++. |+++.++++...
T Consensus 376 ~~~~-----------------~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~ 431 (491)
T 4aps_A 376 ALYG-----------------TSGKVSPLWLVGSWALVIL-GEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSS 431 (491)
T ss_dssp HHCC-----------------CCTTCCTHHHHHHHHHHHH-HHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHH
T ss_pred HhcC-----------------CCCCccHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence 0000 0001234566677788899 999999999999999998653 788889999999
Q ss_pred HHHHHHHHhhhheeeeccccccchhHHHHHHHHHHHHHhccce
Q 044630 159 TLVLLITSTIVAYVQTVSWAWGFTIPTVCLFCGLVLLFAGMRI 201 (343)
Q Consensus 159 ~iG~~ig~~~~~~l~~~gw~~~F~i~~~~~~l~~~~~~~~~~~ 201 (343)
++|..+++.+.+++.+.++...|.+.+++.+++.++++...++
T Consensus 432 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 432 SVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887667778887777777666666555444
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-07 Score=91.42 Aligned_cols=166 Identities=11% Similarity=0.083 Sum_probs=105.7
Q ss_pred HHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-H--HHHHHHHHHhhcCCCCCCCCCCcccc
Q 044630 18 VYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-L--LGMLMVTLTAIVPQLRPPHCTNEERI 94 (343)
Q Consensus 18 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~--~g~~~l~~~~~~~~~~~~~c~~~~~~ 94 (343)
.++.+..+.+................++.++++++.||+ |||+.++.+. . ++.+.+..... ..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~-~~------------ 366 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY-TQ------------ 366 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHH-TT------------
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHh-cc------------
Confidence 344556788888777777777888889999999999995 9999998877 2 22222222211 10
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee
Q 044630 95 HGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT 174 (343)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~ 174 (343)
.........+.++..+. +. +..|....+.+|.||.+ .|+++.++.+...++|+++++.+.+++.+
T Consensus 367 -------~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~E~fPt~------~R~~~~g~~~~~~~~~~~i~~~~~p~l~~ 431 (491)
T 4gc0_A 367 -------APGIVALLSMLFYVAAF-AM-SWGPVCWVLLSEIFPNA------IRGKALAIAVAAQWLANYFVSWTFPMMDK 431 (491)
T ss_dssp -------CCHHHHHHHHHHHHHHH-HT-TTTHHHHHHHHHSSCTT------THHHHHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred -------cchHHHHHHHHHHHHHH-Hh-HHHHHHHHHHHHhCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111222222222233 32 34466678999999875 38999999999999999998888776643
Q ss_pred -------ccccccchhHHHHHHHHHHHHHhccceEEEecCCCCchhHHHH
Q 044630 175 -------VSWAWGFTIPTVCLFCGLVLLFAGMRIYVLVIAEGSLFSSIVQ 217 (343)
Q Consensus 175 -------~gw~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~l~~~~~ 217 (343)
.++...|.+.+++.+++.+..++..| +.+|.++-++.+
T Consensus 432 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P-----ETkg~tLeei~~ 476 (491)
T 4gc0_A 432 NSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP-----ETKGKTLEELEA 476 (491)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC-----CCTTCCHHHHGG
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec-----CCCCCCHHHHHH
Confidence 34566677777666666555444333 235666666543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-08 Score=95.77 Aligned_cols=153 Identities=14% Similarity=-0.021 Sum_probs=110.4
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH--HHHHHHHHHHhhcC
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF--LLGMLMVTLTAIVP 81 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~--~~g~~~l~~~~~~~ 81 (343)
+..++++++..+++.|+++.+|++..+++.+......+..++.++.|+++||+ ||+..+.... ..+..++..... +
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-~ 287 (375)
T 2gfp_A 210 GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQSVICCLLAGLLMWIPDWF-G 287 (375)
T ss_dssp HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHHHHHHHHHHHHTSSSSSHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh-c
Confidence 34456777778888899888999999999999999988889999999999994 7722221111 111111011100 0
Q ss_pred CCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHH
Q 044630 82 QLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLV 161 (343)
Q Consensus 82 ~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG 161 (343)
..+.+.+++...+.++ +.|...+...++..|.+| + .|++.++.+....++|
T Consensus 288 ---------------------~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p-~------~~g~~~g~~~~~~~~g 338 (375)
T 2gfp_A 288 ---------------------VMNVWTLLVPAALFFF-GAGMLFPLATSGAMEPFP-F------LAGTAGALVGGLQNIG 338 (375)
T ss_dssp ---------------------HHHHHHHHHHHHHHHH-HHHHTSSTTHHHHHTHHH-H------HHHHHHHHHHHHHHHH
T ss_pred ---------------------cccHHHHHHHHHHHHH-HHHHhhHHHHHHHHHhCC-c------ccchHHHHHHHHHHHH
Confidence 0134556667778888 999999999999999875 2 3899999999999999
Q ss_pred HHHHHhhhheeee-ccccccchhHHHH
Q 044630 162 LLITSTIVAYVQT-VSWAWGFTIPTVC 187 (343)
Q Consensus 162 ~~ig~~~~~~l~~-~gw~~~F~i~~~~ 187 (343)
..+++.+.+++.+ .+|...+.+.++.
T Consensus 339 ~~~~~~~~g~l~~~~~~~~~~~~~~~~ 365 (375)
T 2gfp_A 339 SGVLASLSAMLPQTGQGSLGLLMTLMG 365 (375)
T ss_dssp HHCCSTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 9999999999887 7888777764443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=97.38 E-value=3.6e-05 Score=75.14 Aligned_cols=90 Identities=12% Similarity=0.098 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheeee-c--cc-----
Q 044630 106 LAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQT-V--SW----- 177 (343)
Q Consensus 106 ~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~~-~--gw----- 177 (343)
.+.+.++.++.++ |.+...+...++..|..|++. |+++.++++...++|..+++.+.+++.+ . +|
T Consensus 405 ~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 405 IFWQILPYALLTF-GEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp SHHHHHHHHHHHH-HHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 4556677788899 999999999999999998653 7889999999999999999999998876 2 34
Q ss_pred ----cccchhHHHHHHHHHHHHHhccceE
Q 044630 178 ----AWGFTIPTVCLFCGLVLLFAGMRIY 202 (343)
Q Consensus 178 ----~~~F~i~~~~~~l~~~~~~~~~~~~ 202 (343)
+..|.+.+++.+++.++++...+++
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2336666666666666665544443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 343 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.41 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.19 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.08 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.95 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=1.6e-13 Score=128.72 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=120.5
Q ss_pred HHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 044630 14 AIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEER 93 (343)
Q Consensus 14 ~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~ 93 (343)
+.+..++. ++|+|.++.+.+.+++.++..++.+++|+++||+ |||+++.++.++..+...+.++.+..
T Consensus 45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~---------- 112 (447)
T d1pw4a_ 45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA---------- 112 (447)
T ss_dssp HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHH----------
T ss_pred HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchh----------
Confidence 34445666 5899999999999999999999999999999995 99999998873222222222221210
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhheee
Q 044630 94 IHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTLVLLITSTIVAYVQ 173 (343)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~iG~~ig~~~~~~l~ 173 (343)
..+.+.+++.+++.|+ +.|...+...++++|.++++ +|++.++++..+.++|..+++.+.+++.
T Consensus 113 ---------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 176 (447)
T d1pw4a_ 113 ---------TSSIAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGM 176 (447)
T ss_dssp ---------HSSSSHHHHHHHHHHH-HHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred ---------hhhHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHhh------cccccccccccccchhhhhhhhhhhhHh
Confidence 0135678888999999 99999999999999999754 3889999999999999999998888766
Q ss_pred e--ccccccchhHHHHHHHHHHHHHh
Q 044630 174 T--VSWAWGFTIPTVCLFCGLVLLFA 197 (343)
Q Consensus 174 ~--~gw~~~F~i~~~~~~l~~~~~~~ 197 (343)
+ .+|+..|.+.++..++..++.+.
T Consensus 177 ~~~~~w~~~~~~~~~~~~~~~~~~~~ 202 (447)
T d1pw4a_ 177 AWFNDWHAALYMPAFCAILVALFAFA 202 (447)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhHHHHHHHHHH
Confidence 6 68999999887766554444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.4e-11 Score=112.59 Aligned_cols=165 Identities=16% Similarity=0.110 Sum_probs=99.0
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHhhc
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF---LLGMLMVTLTAIV 80 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~---~~g~~~l~~~~~~ 80 (343)
+..+++....+.++.|+++++|+|.++.+.+.+++.....++.+++|+++||+ ||||+++++. .++..++.+....
T Consensus 18 ~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~~~~~~~~~~~~ 96 (417)
T d1pv7a_ 18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFG 96 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHHTHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34455556667888999999999999999999999999999999999999995 9999998876 2222222221100
Q ss_pred CCCCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH
Q 044630 81 PQLRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL 160 (343)
Q Consensus 81 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i 160 (343)
+ ......++...+.+. +.+...+.......+..+ ++.+.+....+........
T Consensus 97 ~----------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 149 (417)
T d1pv7a_ 97 P----------------------LLQYNILVGSIVGGI-YLGFCFNAGAPAVEAFIE----KVSRRSNFEFGRARMFGCV 149 (417)
T ss_dssp H----------------------HHHTTCHHHHHHTTT-TGGGGGTTHHHHHHHHHH----HHHHHHSCCHHHHHHHHHH
T ss_pred h----------------------hHHHHHHHHHHHhhh-cccccccchhhccccccc----chhhhhHHHHHHHhhhhcc
Confidence 0 011112222222233 333333322222222211 1112344455566677788
Q ss_pred HHHHHHhhhheeeeccccccchhHHHHHHHHHHHHH
Q 044630 161 VLLITSTIVAYVQTVSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 161 G~~ig~~~~~~l~~~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
|..+++.+.+++.+.+|+..+........+..++.+
T Consensus 150 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (417)
T d1pv7a_ 150 GWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185 (417)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHH
Confidence 888888888888775555555554444433333333
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=5.4e-10 Score=104.15 Aligned_cols=166 Identities=13% Similarity=0.075 Sum_probs=121.4
Q ss_pred hhhHHhhhhhHHHHHHhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHhhcCC
Q 044630 4 FERLGSFGIMAIFTVYLLNEYNVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGF-LLGMLMVTLTAIVPQ 82 (343)
Q Consensus 4 ~e~~~~yg~~~~L~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~-~~g~~~l~~~~~~~~ 82 (343)
+-....+++..+++.|+.+.++++..+++.......+...++.+++|+++||+ +|++...... ............ ..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~ 337 (447)
T d1pw4a_ 260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTLVTIATIVY-WM 337 (447)
T ss_dssp HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHHHHHHHHHT-TS
T ss_pred hhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHHHHHHHHHH-Hh
Confidence 34456678888899999999999999999999999999999999999999995 8765433332 111111111111 10
Q ss_pred CCCCCCCCccccccccCCCCcchHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHHHHHHH-H
Q 044630 83 LRPPHCTNEERIHGQCIGPNRNQLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYYTTFTL-V 161 (343)
Q Consensus 83 ~~~~~c~~~~~~~~~~~~~~~~~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y~~~~i-G 161 (343)
. ...+.+...+..++.|+ +.++..+....+..|.++++ .|+++.++.+...++ |
T Consensus 338 -~-----------------~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~~g 392 (447)
T d1pw4a_ 338 -N-----------------PAGNPTVDMICMIVIGF-LIYGPVMLIGLHALELAPKK------AAGTAAGFTGLFGYLGG 392 (447)
T ss_dssp -C-----------------CTTCHHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTT------HHHHHHHHHHHHHHHHH
T ss_pred -c-----------------ccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHH
Confidence 0 01235566667777888 88888888889999998754 378888988887777 5
Q ss_pred HHHHHhhhheeee-ccccccchhHHHHHHHHHHHHH
Q 044630 162 LLITSTIVAYVQT-VSWAWGFTIPTVCLFCGLVLLF 196 (343)
Q Consensus 162 ~~ig~~~~~~l~~-~gw~~~F~i~~~~~~l~~~~~~ 196 (343)
.++++.+.+++.+ .||+..|.+.+++.+++.++..
T Consensus 393 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999 9999999887776666655443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=7.6e-10 Score=100.64 Aligned_cols=144 Identities=5% Similarity=0.004 Sum_probs=108.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccCCCCcc
Q 044630 25 NVSQAYVAAKFGAWNGVADFLTVIFAFLADAYIGKFVTIVLGFLLGMLMVTLTAIVPQLRPPHCTNEERIHGQCIGPNRN 104 (343)
Q Consensus 25 g~s~~~a~~~~~~~~~~~~~~~l~gG~laDr~lGr~~~i~~~~~~g~~~l~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 104 (343)
+.+....+.......+...++.++.+++.||+ ||++.+.++..+..+........+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 310 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT----------------------- 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC-----------------------
T ss_pred ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc-----------------------
Confidence 44455666667777788888999999999995 999999888732222222222211
Q ss_pred hHHHHHHHHHHHHHhccCCCccchhhhhhccCCCCCcchhhhHHHHHHHHH-HHHHHHHHHHHhhhheeee-ccccccch
Q 044630 105 QLAFLHVAMFWLAVGGAGGIRPCSIPFAVDQFDSRTDKGRKEINSFFNWYY-TTFTLVLLITSTIVAYVQT-VSWAWGFT 182 (343)
Q Consensus 105 ~~~~l~~~l~l~~~~G~g~~~~~~~a~~ad~~~~~~~~~~~~~~~~f~~~y-~~~~iG~~ig~~~~~~l~~-~gw~~~F~ 182 (343)
+.+.+++...+.++ +.+...+...+++.|.+|++ .|++.++..+ ....+|..+++.+.|++.| .||+..|.
T Consensus 311 ~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~ 383 (417)
T d1pv7a_ 311 SALEVVILKTLHMF-EVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSCGG------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ccchhhHHHHHHHH-HHHHHHHHHHHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 35666777778889 99999999999999999754 3788888765 4567999999999999999 99999999
Q ss_pred hHHHHHHHHHHHHHhcc
Q 044630 183 IPTVCLFCGLVLLFAGM 199 (343)
Q Consensus 183 i~~~~~~l~~~~~~~~~ 199 (343)
+.+++.+++.++.++..
T Consensus 384 ~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 384 VLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88877766665554443
|