Citrus Sinensis ID: 044938

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MYGQSRCGGSTNMMPSDYAVLDSVRQHLLDESETGLSSVSSASSKSNGAPPTYCRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQVAEAAPAPALPEERGAPAPAVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKRSTPEPSSSTDSGSVSPKRRRKVAALASVPVQAGMKMESGVGQVARVASCTRGDQPLVS
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHcccccccccccEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHcHEEHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEccccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccccccccHHccHHccccccccHcccccccccEEEEEEEccccccEEEcc
Coil and Loop (DISEMBL)
mygqsrcggstnmmpsdyAVLDSVRQHLLdesetglssvssassksngapptycrsssfsrlypcltdnwgdlplrendsedMLVFNFLRDaltvgwvpqeqlaesdrhqvaeaapapalpeergapapavvpsrgkhyrgvrqrpwgkfaaeirdpakngarVWLGTFETAEDAALAYDRAAYRMRGsrallnfplrinsgepepvrikskrstpepssstdsgsvspkRRRKVAALAsvpvqagmkmesgVGQVARVAsctrgdqplvs
Flexible Loop (DISEMBL)
mygqsrcggstnmmpSDYAVLDSVRQHLLDESEtglssvssassksngapPTYCRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQVAEAApapalpeergapapavvpsrgkhyrgvrqrpwgkfaaeirdpakngARVWLGTFETAEDAALAYDRAAYRMRGSRAllnfplrinsgepepvrikskrstpepssstdsgsvspkrrRKVAALasvpvqagmkmesgvGQVARvasctrgdqplvs
Low Complexity Region (SEG)
MYGQSRCGGSTNMMPSDYAVLDSVRQHLLDEsetglssvssassksNGAPPTYCRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQVaeaapapalpeergapapaVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETaedaalaydraayrMRGSRALLNFPLRINSGEPEPVRIKSKRstpepssstdsgsvspKRRRKVAALASVPVQAGMKMESGVGQVARVASCTRGDQPLVS
Disordered region (IsUnstruct)
*********************************************************SFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVP*********************************************RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRI************************************************************************
Disordered Region (DISOPRED)
***************SDYAVLDSVRQHLLDESETGLS********************************WGDLPLRENDSEDMLVFNFLRD**************************************************VRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRI*****************************************************************GDQPLV*
Disordered Region (DISEMBL)
*********STNMMPSDYAVLDSVRQHLL*************************RSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQVAEAAPAPALPEERGAPAPAVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPE*********************************ASVPVQAGMKMESGVGQVARVASCTRGDQPLVS
Disordered Region (DISPRO)
**************PSDYAVLDSVRQHLLDES****************************RLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVP*************************************KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRIN**************************************************SGVGQVARVASCTRGDQPLVS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYGQSRCGGSTNMMPSDYAVLDSVRQHLLDESETGLSSVSSASSKSNGAPPTYCRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQVAEAAPAPALPEERGAPAPAVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKRSTPEPSSSTDSGSVSPKRRRKVAALASVPVQAGMKMESGVGQVARVASCTRGDQPLVS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
O80337	268	Ethylene-responsive trans	yes	no	0.896	0.906	0.549	3e-68
Q40479	233	Ethylene-responsive trans	N/A	no	0.804	0.935	0.555	8e-61
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.804	0.919	0.567	5e-60
Q84XB3	244	Ethylene-responsive trans	N/A	no	0.752	0.836	0.565	2e-57
Q40476	236	Ethylene-responsive trans	N/A	no	0.785	0.902	0.543	4e-57
O80338	243	Ethylene-responsive trans	no	no	0.826	0.921	0.468	1e-53
Q8L9K1	226	Ethylene-responsive trans	no	no	0.638	0.765	0.543	5e-44
O04681	161	Pathogenesis-related gene	N/A	no	0.405	0.683	0.538	2e-30
Q8VZ91	282	Ethylene-responsive trans	no	no	0.328	0.315	0.578	4e-26
Q9LW48	282	Ethylene-responsive trans	N/A	no	0.276	0.265	0.666	5e-26

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  258 bits (659), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 149/271 (54%), Positives = 176/271 (64%), Gaps = 28/271 (10%)

Query: 16  SDYAVLDSVRQHLLDESETGLS-----SVSSASSKSNGAPPTYCRSSSFSRLYPCLTDNW 70
           SDYA L+S+R+HLL ESE  LS     SV+ +        P Y R+ SFS+LYPC T++W
Sbjct: 9   SDYAFLESIRRHLLGESEPILSESTASSVTQSCVTGQSIKPVYGRNPSFSKLYPCFTESW 68

Query: 71  GDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDR-----------HQVAEAAPAPA 119
           GDLPL+ENDSEDMLV+  L DA   GW P    ++ DR              A     P 
Sbjct: 69  GDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAAVDSVPV 128

Query: 120 LPEERGAPAPAVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAY 179
             E+    + AV  ++GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAY
Sbjct: 129 KKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAY 188

Query: 180 DRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKRSTPEPSSSTDSGSVSPKRRRKVAALA 239
           DRAA+RMRGSRALLNFPLR+NSGEP+PVRIKSKRS+   S+       +PK+RR VA   
Sbjct: 189 DRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSSFSSSNENG----APKKRRTVA--- 241

Query: 240 SVPVQAGMKMESGVGQVARVASCTRGDQPLV 270
                AG  M+ G+     V    RGD+ LV
Sbjct: 242 -----AGGGMDKGLTVKCEVVEVARGDRLLV 267

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  233 bits (595), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 131/236 (55%), Positives = 163/236 (69%), Gaps = 18/236 (7%)

Query: 46  SNGAPPTYCRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVP----QE 101
           S   PPT     SFS L PCLTD WGDLPL+ +DSEDM+++  L DALT GW P      
Sbjct: 6   STELPPT-----SFSSLMPCLTDTWGDLPLKVDDSEDMVIYGLLSDALTAGWTPFNLTST 60

Query: 102 QLAESDRHQVAEAA-PAPAL-PEERGAPAPAVVPSRGKHYRGVRQRPWGKFAAEIRDPAK 159
           ++    R ++  A  P P++ P      A AVVP +G+HYRGVRQRPWGKFAAEIRDPAK
Sbjct: 61  EIKAEPREEIEPATIPVPSVAPPAETTTAQAVVP-KGRHYRGVRQRPWGKFAAEIRDPAK 119

Query: 160 NGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKRSTPEPS 219
           NGARVWLGT+ETAE+AALAYD+AAYRMRGS+ALLNFP RI   EPEPVR+ +KR +PEP+
Sbjct: 120 NGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVRLTAKRRSPEPA 179

Query: 220 SSTDSGSV---SPKRRRKVAALASVPVQAGMKMESGVGQVA-RVASCTRGDQPLVS 271
           SS+ S ++   SPKRRRK  A+A+   +  ++  S   QV  ++     G+Q LVS
Sbjct: 180 SSSISSALENGSPKRRRK--AVAAKKAELEVQSRSNAMQVGCQMEQFPVGEQLLVS 233

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  231 bits (588), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 131/231 (56%), Positives = 163/231 (70%), Gaps = 13/231 (5%)

Query: 51  PTYCRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVP----QEQLAES 106
           P Y R+SSFS L PCLTD WGDLPL+ +DSEDM+++  L DALT GW P      ++   
Sbjct: 10  PVYHRTSSFSSLMPCLTDTWGDLPLKVDDSEDMVIYGLLSDALTTGWTPFNLTSTEIKAE 69

Query: 107 DRHQVAEA-APAPAL-PEERGAPAPAVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARV 164
            R ++  A +P P++ P      A AVVP +G+HYRGVRQRPWGKFAAEIRDPAKNGARV
Sbjct: 70  PREEIEPATSPVPSVAPPAETTTAQAVVP-KGRHYRGVRQRPWGKFAAEIRDPAKNGARV 128

Query: 165 WLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKRSTPEPSSSTDS 224
           WLGT+ETAE+AALAYD+AAYRMRGS+ALLNFP RI   EPEPVR+  KR +PEP+SS+ S
Sbjct: 129 WLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVRLTVKRRSPEPASSSIS 188

Query: 225 GSVS---PKRRRKVAALASVPVQAGMKMESGVGQV-ARVASCTRGDQPLVS 271
            +     PKRRRK  A+A+   +  ++  S V QV  ++     G+Q LVS
Sbjct: 189 PASENSLPKRRRK--AVAAKQAELEVQSRSNVMQVGCQMEQFPVGEQLLVS 237

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q84XB3|ERF1_SOLLC Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1

 Score =  222 bits (566), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 121/214 (56%), Positives = 151/214 (70%), Gaps = 10/214 (4%)

Query: 51  PTYCRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQ 110
           P YCRSSSFS L PCLT++WGDLPL+ NDSEDM+++ FL+DA ++GW P    +E  + +
Sbjct: 18  PVYCRSSSFSSLMPCLTESWGDLPLKVNDSEDMVIYGFLQDAFSIGWTPSNLTSEEVKLE 77

Query: 111 VAEAAPAPALPEERGAP--APAVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGT 168
             E    PA+      P  APA +  +G+HYRGVRQRPWGKFAAEIRDPAKNGARVWLGT
Sbjct: 78  PREEI-EPAMSTSVSPPTVAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGT 136

Query: 169 FETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKR---STPEPSSSTDSG 225
           +E+AE+AALAY +AA+RMRG++ALLNFP RI   EPEPVR+  KR    +   S S+ S 
Sbjct: 137 YESAEEAALAYGKAAFRMRGTKALLNFPHRIGLNEPEPVRVTVKRRLSESASSSVSSASE 196

Query: 226 SVSPKRRRKVAALASVPVQAGMKMESGVGQVARV 259
           S SPKRRRK  A      QA +++ES    V +V
Sbjct: 197 SGSPKRRRKGVAAK----QAELEVESRGPNVMKV 226

Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways.

Solanum lycopersicum (taxid: 4081)

>sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1

 Score =  221 bits (564), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 126/232 (54%), Positives = 155/232 (66%), Gaps = 19/232 (8%)

Query: 48  GAPPTYCRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVP-----QEQ 102
           G  P Y R+SSFSRL PCLT+ WGDLPL+ +DSEDM+++  L+DAL VGW P      E 
Sbjct: 16  GEFPVYRRNSSFSRLIPCLTETWGDLPLKVDDSEDMVIYTLLKDALNVGWSPFNFSAGEV 75

Query: 103 LAESDRHQVAEAAPAPALPEERGAPAPAVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGA 162
            +E    ++  +            P       RG+HYRGVR+RPWGKFAAEIRDPAKNGA
Sbjct: 76  KSEQREEEIVVSPAETTAAPAAELP-------RGRHYRGVRRRPWGKFAAEIRDPAKNGA 128

Query: 163 RVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSK-RSTPEPSSS 221
           RVWLGT+ET E+AA+AYD+AAYRMRGS+A LNFP RI   EPEPVR+ +K R++PEP+SS
Sbjct: 129 RVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLNEPEPVRVTAKRRASPEPASS 188

Query: 222 TDSGSVSPKRRRK-VAALASVPVQAGMKMESGVGQVA-RVASCTRGDQPLVS 271
           +++   SPKRRRK VA   S  V+   K  S V Q   +V   TR  Q LVS
Sbjct: 189 SENS--SPKRRRKAVATEKSEAVEVESK--SNVLQTGCQVELLTRRHQLLVS 236

Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  209 bits (533), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/290 (46%), Positives = 167/290 (57%), Gaps = 66/290 (22%)

Query: 1   MYGQSRCGGSTNMMPSDYAVLDSVRQHLLD---ESETGLSSVSSASSKSNGAPPTYCRSS 57
           MYGQ         + SDYA+L+S+ +HLL    E+E  L+  + +S              
Sbjct: 1   MYGQCN-------IESDYALLESITRHLLGGGGENELRLNESTPSS-------------- 39

Query: 58  SFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGW----------VPQEQLAESD 107
                  C T++WG LPL+ENDSEDMLV+  L+DA                P  ++  ++
Sbjct: 40  -------CFTESWGGLPLKENDSEDMLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTE 92

Query: 108 RHQVAEAAPAPALPEERGAPAPAVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLG 167
                E  P  A+P    A        + KHYRGVRQRPWGKFAAEIRDPAKNGARVWLG
Sbjct: 93  NFTAMEEKPKKAIPVTETA-------VKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLG 145

Query: 168 TFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKR------STPEPSSS 221
           TFETAEDAALAYD AA+RMRGSRALLNFPLR+NSGEP+PVRI SKR      S+   +SS
Sbjct: 146 TFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKRSSSSSSSSSSSTSS 205

Query: 222 TDSGSVSPKRRRKVAALASVPVQAGMKMESGVGQVARVASCTRGDQPLVS 271
           +++G +  KRRRK   L S  VQ  +K E        V   TR D+ LVS
Sbjct: 206 SENGKL--KRRRKAENLTSEVVQ--VKCE--------VGDETRVDELLVS 243

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2

 Score =  177 bits (450), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 100/184 (54%), Positives = 125/184 (67%), Gaps = 11/184 (5%)

Query: 39  VSSASSKSNGAPP-TYCRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGW 97
           +SS+ S +NG     Y R+ SFS +   L DNW DLPL  +DS+DM ++N LRDA++ GW
Sbjct: 1   MSSSDSVNNGVNSRMYFRNPSFSNV--ILNDNWSDLPLSVDDSQDMAIYNTLRDAVSSGW 58

Query: 98  VPQEQLAESDRHQVAEAAPAPALPEERGAPAPAVVPSRGKHYRGVRQRPWGKFAAEIRDP 157
            P      S     AE    PA  +  G+ AP     +G  YRGVR+RPWGKFAAEIRDP
Sbjct: 59  TPSVPPVTSP----AEENKPPAT-KASGSHAPR---QKGMQYRGVRRRPWGKFAAEIRDP 110

Query: 158 AKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKRSTPE 217
            KNGARVWLGT+ET EDAA+AYDRAA+++RGS+A LNFP  I S + EPVRI+ +R +PE
Sbjct: 111 KKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRPRRRSPE 170

Query: 218 PSSS 221
           PS S
Sbjct: 171 PSVS 174

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/130 (53%), Positives = 90/130 (69%), Gaps = 20/130 (15%)

Query: 72  DLPLRENDSEDMLVFNFLR--DALTVGWVPQEQLAESDRHQVAEAAPAPALPEERGAPAP 129
           DLPL ENDS++M+++  L   +AL + ++PQ       R+Q+        LP        
Sbjct: 8   DLPLNENDSQEMVLYEVLNEANALNIPYLPQ-------RNQL--------LPRNNILRPL 52

Query: 130 AVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGS 189
             +   GK YRGVR+RPWGK+AAEIRD A++GARVWLGTFETAE+AALAYDRAA+RMRG+
Sbjct: 53  QCI---GKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGA 109

Query: 190 RALLNFPLRI 199
           +ALLNFP  I
Sbjct: 110 KALLNFPSEI 119

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|Q8VZ91|EF103_ARATH Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2

 Score =  118 bits (295), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 65/95 (68%), Gaps = 6/95 (6%)

Query: 110 QVAEAAPAPALPEERGAPAPAVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTF 169
           Q A   P P LP       P V     +HYRGVR RPWGKFAAEIRDP + G RVWLGTF
Sbjct: 114 QFATGNPKPELP------VPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTF 167

Query: 170 ETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEP 204
           ETA +AA AYD+ A+R+RGS+A+LNFPL ++   P
Sbjct: 168 ETAIEAARAYDKEAFRLRGSKAILNFPLEVDKWNP 202

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW48|ERF5_NICSY Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1

 Score =  118 bits (295), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 63/75 (84%)

Query: 131 VVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSR 190
           + P+  KHYRGVRQRPWGKFAAEIRDP + G RVWLGTF+TA +AA AYDRAAY++RGS+
Sbjct: 130 LAPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSK 189

Query: 191 ALLNFPLRINSGEPE 205
           A++NFPL + + + E
Sbjct: 190 AIVNFPLEVANFKQE 204

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
224074209	280	AP2/ERF domain-containing transcription	0.933	0.903	0.574	4e-79
213950351	255	AP2/EREBP transcription factor [Gossypiu	0.874	0.929	0.636	2e-78
151301818	255	ethylene responsive element binding prot	0.874	0.929	0.632	8e-77
224113541	283	AP2/ERF domain-containing transcription	0.929	0.890	0.579	1e-75
356540552	240	PREDICTED: ethylene-responsive transcrip	0.830	0.937	0.602	2e-73
255583191	284	Ethylene-responsive transcription factor	0.929	0.887	0.586	9e-73
316986186	287	ethylene responsive factor, partial [Pru	0.944	0.891	0.566	5e-71
292668959	276	AP2 domain class transcription factor [M	0.937	0.920	0.577	7e-71
449469359	250	PREDICTED: ethylene-responsive transcrip	0.881	0.956	0.573	1e-69
222427679	282	ethylene responsive transcription factor	0.948	0.911	0.560	6e-69

>gi|224074209|ref|XP_002304302.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222841734|gb|EEE79281.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  300 bits (769), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 170/296 (57%), Positives = 206/296 (69%), Gaps = 43/296 (14%)

Query: 1   MYGQSRCGGSTNMMPSDYAVLDSVRQHLLDESETGLSSVSSA----------SSKSNGAP 50
           MYGQS       +   DYA LD VR HL  E+ +   + + +          +  +N  P
Sbjct: 1   MYGQSL------LDQPDYAFLDPVRLHLQGETVSTAPTTTCSYTPAITTTTAAPAANYTP 54

Query: 51  P-TYCRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQ---EQLAES 106
           P  YCRS+SFS LYPCLT+NWGDLPL+ +DSEDM ++  LRDA+TVGWVP    +QL + 
Sbjct: 55  PLVYCRSTSFSSLYPCLTENWGDLPLKVDDSEDMFLYAVLRDAVTVGWVPSLKTDQLVQP 114

Query: 107 D--------RHQVAEAAPAPALPEERGAPAPAVVPSRGKHYRGVRQRPWGKFAAEIRDPA 158
           +           +A + P+ A+P       PAV+PS+GKHYRGVRQRPWGKFAAEIRDPA
Sbjct: 115 NFPLVKLEPTENLAVSPPSTAVPVAE----PAVLPSKGKHYRGVRQRPWGKFAAEIRDPA 170

Query: 159 KNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKRSTPEP 218
           KNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLR+NSGEP+PVR+ SKRS+PEP
Sbjct: 171 KNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSPEP 230

Query: 219 SSSTDSGSVSPKRRRKV---AALASVPVQAGMKMESGVG-QVARVASCTRGDQPLV 270
           SSS DSG  SPKRR+KV   A  A+V  +AG+++ +GVG QV      T G+Q LV
Sbjct: 231 SSSVDSG--SPKRRKKVGGTAGAATVVAKAGLEIGNGVGCQVG-----THGEQMLV 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|213950351|gb|ACJ54440.1| AP2/EREBP transcription factor [Gossypium hirsutum]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/245 (63%), Positives = 182/245 (74%), Gaps = 8/245 (3%)

Query: 16  SDYAVLDSVRQHLLDESETGLSSVSSASSKSNGAPPTYCRSSSFSRLYPCLTDNWGDLPL 75
           SD  +LDS+R+HLL ES     + S+  +    APP +CRSSSFSRLYPCLTD WGDLPL
Sbjct: 10  SDLMMLDSIRRHLLGESSDLRFTSSNDCTNVGAAPPMFCRSSSFSRLYPCLTDTWGDLPL 69

Query: 76  RENDSEDMLVFNFLRDALTVGWVPQEQLAES------DRHQVAEAAPAPALPEERGAPAP 129
           +ENDSEDMLVF +LRDALTVGW P +  + +      +  ++        +P    A  P
Sbjct: 70  KENDSEDMLVFGYLRDALTVGWAPSDHSSPTFPPIKPEPQEIPTETAVKEVPTVANAAVP 129

Query: 130 AVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGS 189
            VVP++GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYD+AAYRMRGS
Sbjct: 130 TVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDKAAYRMRGS 189

Query: 190 RALLNFPLRINSGEPEPVRIKSKRS--TPEPSSSTDSGSVSPKRRRKVAALASVPVQAGM 247
           RALLNFPLR+NSGEP+PVRI SKR+   P  SSS+ S + SPKRRRKV + A V  QAG+
Sbjct: 190 RALLNFPLRVNSGEPDPVRITSKRATPEPSTSSSSGSENGSPKRRRKVGSAAPVVAQAGL 249

Query: 248 KMESG 252
            M  G
Sbjct: 250 NMGFG 254

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|151301818|gb|ABN50365.2| ethylene responsive element binding protein 1 [Gossypium barbadense]

 Score =  292 bits (748), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 155/245 (63%), Positives = 181/245 (73%), Gaps = 8/245 (3%)

Query: 16  SDYAVLDSVRQHLLDESETGLSSVSSASSKSNGAPPTYCRSSSFSRLYPCLTDNWGDLPL 75
           SD  +LDS+R+ LL ES     + S+  +    APP +CRSSSFSRLYPCLTD WGDLPL
Sbjct: 10  SDLMMLDSIRRLLLGESSDLRFTSSNDCTNVGAAPPMFCRSSSFSRLYPCLTDIWGDLPL 69

Query: 76  RENDSEDMLVFNFLRDALTVGWVPQEQLAES------DRHQVAEAAPAPALPEERGAPAP 129
           +ENDSEDMLVF +LRDALTVGW P +  + +      +  ++        +P    A  P
Sbjct: 70  KENDSEDMLVFGYLRDALTVGWAPSDHSSPTFPPIKPEPQEIPTETAVKEVPTVANAAVP 129

Query: 130 AVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGS 189
            VVP++GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYD+AAYRMRGS
Sbjct: 130 TVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDKAAYRMRGS 189

Query: 190 RALLNFPLRINSGEPEPVRIKSKRS--TPEPSSSTDSGSVSPKRRRKVAALASVPVQAGM 247
           RALLNFPLR+NSGEP+PVRI SKR+   P  SSS+ S + SPKRRRKV + A V  QAG+
Sbjct: 190 RALLNFPLRVNSGEPDPVRITSKRATPEPSTSSSSGSENGSPKRRRKVGSAAPVVAQAGL 249

Query: 248 KMESG 252
            M  G
Sbjct: 250 NMGFG 254

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113541|ref|XP_002332558.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|224144214|ref|XP_002336120.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222835042|gb|EEE73491.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222873207|gb|EEF10338.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 168/290 (57%), Positives = 196/290 (67%), Gaps = 38/290 (13%)

Query: 9   GSTNMMPSDYAVLDSVRQHLLDESETGLSSVSSASSKSNGAP------------------ 50
           G   +  SDYA L+SVR HLL E     +S ++ASS  N A                   
Sbjct: 3   GENFLDQSDYAFLESVRMHLLGEP----TSPTTASSCFNPASTNSAMSAAAATTPATCTP 58

Query: 51  -PTYCRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQ---EQLAES 106
            P YCRS+SFS LYPCLT+NWGDLPL+ +DSEDM ++  L DA+TVGWVP    +Q  E 
Sbjct: 59  VPVYCRSTSFSSLYPCLTENWGDLPLKVDDSEDMFLYGVLSDAVTVGWVPSLKTDQFIEP 118

Query: 107 DRHQVAEAAPAPAL---PEERGAPA--PAVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNG 161
           +   V +  P+  L   P    AP   PAVVPS+GKHYRGVRQRPWGKFAAEIRDPAKNG
Sbjct: 119 NLPAV-KLEPSENLTISPPRTEAPIAEPAVVPSKGKHYRGVRQRPWGKFAAEIRDPAKNG 177

Query: 162 ARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKRSTPEPSSS 221
           ARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLR+NSGEP PVR+ SKRS+PE SSS
Sbjct: 178 ARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPAPVRVTSKRSSPERSSS 237

Query: 222 TDSGSVSPKRRRKVAALASVPVQAGMKMESGVG-QVARVASCTRGDQPLV 270
            +S S+  K+    A  A+V  QAG++M +GVG QV      T G+Q LV
Sbjct: 238 VESASLKRKKVGGTAGTATVVPQAGLEMRNGVGCQVG-----THGEQLLV 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540552|ref|XP_003538752.1| PREDICTED: ethylene-responsive transcription factor 1A-like [Glycine max]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/249 (60%), Positives = 178/249 (71%), Gaps = 24/249 (9%)

Query: 1   MYGQSRCGGSTNMMPSDYAVLDSVRQHLLDESETGLSSVSSASSKSNGAPPTYCRSSSFS 60
           MYGQS          SD A+LDS+R+HLL +SE       + +S   G+ P Y RSSSF 
Sbjct: 1   MYGQS-------CYESDLALLDSIRRHLLGDSEEHRFGAPNVNS---GSTPLYSRSSSFG 50

Query: 61  RLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQVA-------- 112
           RLYPCL+++WG+LPL E+DSEDML++  LRDA+ VGWVP    +  +    A        
Sbjct: 51  RLYPCLSNDWGELPLMEDDSEDMLLYGVLRDAVNVGWVPSLDASSPESFSSAFMPPVTVK 110

Query: 113 ---EAAPAP---ALPEERGAPAPAVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWL 166
              +  PAP     P     PAPAVVP++GKHYRGVRQRPWGKFAAEIRDPAKNGARVWL
Sbjct: 111 SETDLFPAPEPICNPPVVQGPAPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWL 170

Query: 167 GTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKRSTPEPSSSTDSGS 226
           GTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVR+ +KR++ EP SS++SGS
Sbjct: 171 GTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRVTAKRASAEPCSSSESGS 230

Query: 227 VSPKRRRKV 235
              KR++ V
Sbjct: 231 WVKKRKKVV 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583191|ref|XP_002532361.1| Ethylene-responsive transcription factor 1A, putative [Ricinus communis] gi|223527948|gb|EEF30034.1| Ethylene-responsive transcription factor 1A, putative [Ricinus communis]

 Score =  279 bits (714), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 163/278 (58%), Positives = 198/278 (71%), Gaps = 26/278 (9%)

Query: 16  SDYAVLDSVRQHLLDESETGLSSVSSASSKSN------GAPPTYCRSSSFSRLYPCLTDN 69
           S+YA ++SVR+HLL+  E+ +SS SS  S +       G  P YCRSSSFS LYPCL++N
Sbjct: 10  SNYAAIESVRRHLLEGGESIMSSFSSNISNTTPAVATTGPKPVYCRSSSFSSLYPCLSEN 69

Query: 70  WGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQ--LAES---DRHQVAEAAPAPALPEER 124
           WGDLPL+ +D EDML++  LRDALTVGWVPQ+   L +S   D   ++     P +PEE 
Sbjct: 70  WGDLPLKADDYEDMLLYGVLRDALTVGWVPQDNFPLVKSEPLDNFPLSSLPLPPPMPEEI 129

Query: 125 GAPAPAVVP-----------SRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAE 173
             P P V             ++GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAE
Sbjct: 130 FTPPPVVTAQPSPPVASPAVAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAE 189

Query: 174 DAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKRSTPEPSSSTDSGSVSPKRRR 233
           DAALAYDRAAYRMRGSRALLNFPLR+N+GEP+PVR+ SKRS+    SS+ S S SPKRR+
Sbjct: 190 DAALAYDRAAYRMRGSRALLNFPLRVNNGEPDPVRVTSKRSS-PEPSSSSSESGSPKRRK 248

Query: 234 KVAALASVPVQAGMKMESGVGQVARVASCTRGDQPLVS 271
           K A   SV  QAG+++   V +  +VA+ T G+Q LVS
Sbjct: 249 KAA--VSVKAQAGVQL-GNVARCQQVANGTHGEQQLVS 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316986186|gb|ADU76349.1| ethylene responsive factor, partial [Prunus persica]

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 171/302 (56%), Positives = 203/302 (67%), Gaps = 46/302 (15%)

Query: 1   MYGQSRCGGSTNMMPSDYAVLDSVRQHLLDESETGLSSVSSASSKSNGAPPTYCRSSSFS 60
           M+GQS          +D  +LDS+R+HLL E++  + + S A+S S    P + RSSSFS
Sbjct: 1   MFGQSGTD-------ADITLLDSIRRHLLGETDLRVGN-SMANSISG---PIFSRSSSFS 49

Query: 61  RLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQ---------- 110
            LYPCLT+NWGDLPL+E+DSEDM+++  LRDA+ V WVP      +D             
Sbjct: 50  SLYPCLTENWGDLPLKEDDSEDMVLYGVLRDAVNVCWVPSLGSGSTDTRSLNFSVKLEPE 109

Query: 111 -------VAEAAPAPALPEERGAPA----------PAVVPSRGKHYRGVRQRPWGKFAAE 153
                  V E  PAP  P     PA          PAVVP++GKHYRGVRQRPWGKFAAE
Sbjct: 110 VLTPVSTVPEKKPAPVQPARPVQPARPVQQPSQAGPAVVPAKGKHYRGVRQRPWGKFAAE 169

Query: 154 IRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKR 213
           IRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLR+NSGEP+PVR+ SKR
Sbjct: 170 IRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKR 229

Query: 214 STPEPSSSTDSGSVSPKRRRKVAALASVPVQAGMKMESGVGQV----ARVASCTRGDQPL 269
           S+  P  S+ S S SPKRR+KVA L   P QAG++M +G+GQ       V SCTRG+Q L
Sbjct: 230 SS--PEPSSSSESGSPKRRKKVAVLN--PAQAGLEMGAGIGQEQVGGQVVVSCTRGEQLL 285

Query: 270 VS 271
           VS
Sbjct: 286 VS 287

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668959|gb|ADE41134.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  273 bits (697), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 168/291 (57%), Positives = 205/291 (70%), Gaps = 37/291 (12%)

Query: 1   MYGQSRCGGSTNMMPSDYAVLDSVRQHLLDESETGLSSVSSASSKSNGAPPTYCRSSSFS 60
           MYGQS          SDY +L+S+R+H L E++  + +  S S    G+ P + RSSSFS
Sbjct: 1   MYGQSGAD-------SDYILLESIRRHFLGETDLLIGNPMSNS----GSGPIFSRSSSFS 49

Query: 61  RLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQ----------------EQLA 104
            LYPCLT+NWGDLPL+E+DSEDM+++  LRDA++VGWVP                 E L 
Sbjct: 50  SLYPCLTENWGDLPLKEDDSEDMVLYGVLRDAVSVGWVPSGSSDTCSYGFSVKSEPEVLP 109

Query: 105 ESDRHQVAEAAPAPALPEERGAPA-PAVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGAR 163
             DR  V E   AP  P ++ A A PAVVP++GKHYRGVRQRPWGKFAAEIRDPAKNGAR
Sbjct: 110 PVDR--VPEKKAAPVQPVQKSAEAVPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGAR 167

Query: 164 VWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKRSTPEPSSSTD 223
           VWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLR+NSGEP+PVR+ + + +    SS+ 
Sbjct: 168 VWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRV-TSKRSSSEPSSSS 226

Query: 224 SGSVSPKRRRKVAALASVPVQAGMKMESGVGQV---ARVA-SCTRGDQPLV 270
           S + SPKRR+K  A  S PVQAG++M +G+GQ     +VA S TRG+Q LV
Sbjct: 227 SENGSPKRRKK--ADGSSPVQAGLEMGAGMGQKQVGGQVAVSVTRGEQLLV 275

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469359|ref|XP_004152388.1| PREDICTED: ethylene-responsive transcription factor 2-like [Cucumis sativus]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 153/267 (57%), Positives = 178/267 (66%), Gaps = 28/267 (10%)

Query: 11  TNMMPSDYAVLDSVRQHLLDESETGLSSVSSASSKSNGAP-PTYCRSSSFSRLYPCLTDN 69
           T    SD+  LD +R+HLL ES+     +S+A++   G P P + RS SFS L PCL DN
Sbjct: 4   TTKSESDFCFLDPIRRHLLGESD-----ISAAAAAPLGRPTPVFTRSGSFSSLIPCLEDN 58

Query: 70  WGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQVAEAAPAPALPEERGAP-- 127
           WGDLPL+ +DSEDM++   LRDA+ VGWVP     +    +V        L      P  
Sbjct: 59  WGDLPLKVDDSEDMMLAAVLRDAVGVGWVPSLGSCDFGFSEVKSEPEVIPLSFPAVLPNV 118

Query: 128 --APAVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYR 185
              P VVP +GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGT+ETAEDAALAYDRAAYR
Sbjct: 119 TMKPTVVPEKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYR 178

Query: 186 MRGSRALLNFPLRINSGEPEPVRIKSKRSTPEPSSSTDSGSVSPKRRRKV-AALASVPVQ 244
           MRGSRALLNFPLR+NSGEPEPVR+ SKRS+PE SS       SPKRR+KV +A+ SV VQ
Sbjct: 179 MRGSRALLNFPLRVNSGEPEPVRVTSKRSSPEVSS-------SPKRRKKVGSAVESVGVQ 231

Query: 245 AGMKMESGVGQVARVASCTRGDQPLVS 271
              +          VAS T G Q  VS
Sbjct: 232 VEQQ----------VASFTHGGQLFVS 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222427679|gb|ACM49849.1| ethylene responsive transcription factor 1a [Prunus salicina]

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 166/296 (56%), Positives = 200/296 (67%), Gaps = 39/296 (13%)

Query: 1   MYGQSRCGGSTNMMPSDYAVLDSVRQHLLDESETGLSSVSSASSKSNGAPPTYCRSSSFS 60
           M+GQS          +D  +LDS+R+HLL E++  + + S A+S +    P + RSSSFS
Sbjct: 1   MFGQSGTD-------ADITLLDSIRRHLLGETDLRIGN-SMANSVTG---PIFSRSSSFS 49

Query: 61  RLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDR------------ 108
            LYPCLT+NWGDLPL+E+DSEDM+++  LRDA+ VGWVP      +D             
Sbjct: 50  SLYPCLTENWGDLPLKEDDSEDMVLYGVLRDAVNVGWVPSLGSGSADTCSLNFSVKSEPE 109

Query: 109 -----HQVAEAAPAPALP----EERGAPAPAVVPSRGKHYRGVRQRPWGKFAAEIRDPAK 159
                 +V E  P+P  P    ++     PAVVP++GKHYRGVRQRPWGKFAAEIRDPAK
Sbjct: 110 VLTPVSEVPEKKPSPVQPVRPAKQPAQAGPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAK 169

Query: 160 NGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKRSTPEPS 219
           NGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLR+NSGEPEPVR+ SKRS+    
Sbjct: 170 NGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSS-PEP 228

Query: 220 SSTDSGSVSPKRRRKVAALASVPVQAGMKM----ESGVGQVARVASCTRGDQPLVS 271
           SS+ S S SPKRR+KVA L   P QAG++M             V SCTRG+Q LVS
Sbjct: 229 SSSSSESGSPKRRKKVAVLD--PAQAGLEMGAGIGQQQVGGQVVVSCTRGEQLLVS 282

Source: Prunus salicina

Species: Prunus salicina

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.896	0.906	0.453	2.1e-52
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.446	0.497	0.581	2.3e-46
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.258	0.231	0.742	1.9e-39
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.557	0.668	0.453	1.1e-30
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.284	0.256	0.558	2.9e-22
TAIR|locus:2129106	282	ERF6 "AT4G17490" [Arabidopsis	0.273	0.262	0.540	6.6e-21
TAIR|locus:2086223	218	ERF1 "ethylene response factor	0.217	0.270	0.610	2.2e-20
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.284	0.348	0.5	4.5e-20
TAIR|locus:2151576	201	AT5G61590 [Arabidopsis thalian	0.276	0.373	0.538	1.2e-17
TAIR|locus:2156171	248	AT5G61890 [Arabidopsis thalian	0.247	0.270	0.588	8.6e-17

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 123/271 (45%), Positives = 143/271 (52%)

Query:    16 SDYAVLDSVRQHLLDEXXXXXXXXXXXXXXXN-----GAPPTYCRSSSFSRLYPCLTDNW 70
             SDYA L+S+R+HLL E               +        P Y R+ SFS+LYPC T++W
Sbjct:     9 SDYAFLESIRRHLLGESEPILSESTASSVTQSCVTGQSIKPVYGRNPSFSKLYPCFTESW 68

Query:    71 GDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQVXXXXXXXXXXXXXXXX--- 127
             GDLPL+ENDSEDMLV+  L DA   GW P    ++ DR                      
Sbjct:    69 GDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAAVDSVPV 128

Query:   128 --------XXXVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXX 179
                        V  ++GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET        
Sbjct:   129 KKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAY 188

Query:   180 XXXXXXMRGSRALLNFPLRINSGEPEPVRIKSKRXXXXXXXXXXXXXXXXKRRRKVAALA 239
                   MRGSRALLNFPLR+NSGEP+PVRIKSKR                K+RR VAA  
Sbjct:   189 DRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSSFSSSNENGAP----KKRRTVAA-- 242

Query:   240 SVPVQAGMKMESGVGQVARVASCTRGDQPLV 270
                   G  M+ G+     V    RGD+ LV
Sbjct:   243 ------GGGMDKGLTVKCEVVEVARGDRLLV 267

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
 Identities = 75/129 (58%), Positives = 79/129 (61%)

Query:   135 RGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLN 194
             + KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET              MRGSRALLN
Sbjct:   113 KAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLN 172

Query:   195 FPLRINSGEPEPVRIKSKRXXXXXXXXXXXXXXXX----KRRRKVAALASVPVQAGMKME 250
             FPLR+NSGEP+PVRI SKR                    KRRRK   L S  VQ  +K E
Sbjct:   173 FPLRVNSGEPDPVRITSKRSSSSSSSSSSSTSSSENGKLKRRRKAENLTSEVVQ--VKCE 230

Query:   251 SGVGQVARV 259
               VG   RV
Sbjct:   231 --VGDETRV 237

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 272 (100.8 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
 Identities = 52/70 (74%), Positives = 54/70 (77%)

Query:   132 VPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRA 191
             V SRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTF++              MRGSRA
Sbjct:   142 VASRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYDRAAYRMRGSRA 201

Query:   192 LLNFPLRINS 201
             LLNFPLRI S
Sbjct:   202 LLNFPLRIGS 211

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 73/161 (45%), Positives = 90/161 (55%)

Query:    53 YCRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQVX 112
             Y R+ SFS +   L DNW DLPL  +DS+DM ++N LRDA++ GW P      S   +  
Sbjct:    16 YFRNPSFSNVI--LNDNWSDLPLSVDDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEE-- 71

Query:   113 XXXXXXXXXXXXXXXXXXVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETX 172
                                   +G  YRGVR+RPWGKFAAEIRDP KNGARVWLGT+ET 
Sbjct:    72 ------NKPPATKASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETP 125

Query:   173 XXXXXXXXXXXXXMRGSRALLNFPLRINSGEPEPVRIKSKR 213
                          +RGS+A LNFP  I S + EPVRI+ +R
Sbjct:   126 EDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRPRR 166

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
 Identities = 43/77 (55%), Positives = 51/77 (66%)

Query:   137 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 196
             KHYRGVRQRPWGKFAAEIRDP K G+RVWLGTF+T              +RGS+A+LNFP
Sbjct:   154 KHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFP 213

Query:   197 LRINSGEPEPVRIKSKR 213
             L +   +P     + KR
Sbjct:   214 LEVGKWKPRADEGEKKR 230

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2129106 ERF6 "AT4G17490" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
 Identities = 40/74 (54%), Positives = 47/74 (63%)

Query:   131 VVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSR 190
             V     +HYRGVR RPWGKFAAEIRDP + G RVWLGTFET              +RGS+
Sbjct:   129 VAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSK 188

Query:   191 ALLNFPLRINSGEP 204
             A+LNFPL ++   P
Sbjct:   189 AILNFPLEVDKWNP 202

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009644 "response to high light intensity" evidence=IMP

TAIR|locus:2086223 ERF1 "ethylene response factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
 Identities = 36/59 (61%), Positives = 40/59 (67%)

Query:   137 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNF 195
             K YRGVR+RPWGKFAAEIRD  +NG RVWLGTFE+              MRGS A+LNF
Sbjct:    80 KSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNF 138

GO:0003677 "DNA binding" evidence=IEA;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0006952 "defense response" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=IGI;TAS

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
 Identities = 41/82 (50%), Positives = 52/82 (63%)

Query:   137 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 196
             +HYRGVR+RPWGK+AAEIRDP K G RVWLGTF+T              +RGS+A+LNFP
Sbjct:    70 RHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFP 129

Query:   197 LRINSGEP-----EPVRIKSKR 213
             L     E      + + +K+KR
Sbjct:   130 LEAGKHEDLGDNKKTISLKAKR 151

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2151576 AT5G61590 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 42/78 (53%), Positives = 54/78 (69%)

Query:   137 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 196
             +HYRGVR+RPWGKFAAEIRDPAK G+R+WLGTFE+              +RG +A+LNFP
Sbjct:   105 RHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFP 164

Query:   197 LRINSGEPE-PVRIKSKR 213
             L  ++G+ + PV    KR
Sbjct:   165 L--DAGKYDAPVNSCRKR 180

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

TAIR|locus:2156171 AT5G61890 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 40/68 (58%), Positives = 45/68 (66%)

Query:   135 RGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLN 194
             R +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTFET               +GS+A LN
Sbjct:    86 RRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAESAALAYDEAALKFKGSKAKLN 144

Query:   195 FPLRINSG 202
             FP R+  G
Sbjct:   145 FPERVQLG 152

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40479	ERF2_TOBAC	No assigned EC number	0.5550	0.8044	0.9356	N/A	no
O80337	EF100_ARATH	No assigned EC number	0.5498	0.8966	0.9067	yes	no
Q9LW50	ERF2_NICSY	No assigned EC number	0.5670	0.8044	0.9198	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: ERF16 AP2/ERF domain-containing transcription factor (242 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-31
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	9e-30
pfam00847	53	pfam00847, AP2, AP2 domain	1e-12

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  111 bits (280), Expect = 1e-31
 Identities = 44/65 (67%), Positives = 51/65 (78%), Gaps = 1/65 (1%)

Query: 138 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPL 197
            YRGVRQRPWGK+ AEIRDP+K G RVWLGTF+TAE+AA AYDRAA++ RG  A LNFP 
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSK-GKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 198 RINSG 202
            +   
Sbjct: 60  SLYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  106 bits (266), Expect = 9e-30
 Identities = 43/60 (71%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 137 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFP 196
             YRGVRQRPWGK+ AEIRDP   G R+WLGTF+TAE+AA AYDRAA ++RGS A+LNFP
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDP-SGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 137 KHYRGVRQRP-WGKFAAEIRDPAKNGA-RVWLGTFETAEDAALAYDRAAYRMRG 188
             Y+GVR    WG++ AEIRDP +    R  LGTF T E+AA A   A  ++RG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.83
PHA00280	121	putative NHN endonuclease	99.43
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.23

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=3.9e-21  Score=139.74  Aligned_cols=61  Identities=70%  Similarity=1.243  Sum_probs=56.8

Q ss_pred             CcceeeEEcCCCceEEEEecCCCCCeEeecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 044938          137 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLR  198 (271)
Q Consensus       137 S~YRGVr~r~~GKW~AeIr~~~k~Gkri~LGtFdT~EEAA~AYD~AA~~~~G~~A~lNFP~~  198 (271)
                      |+||||+++++|||+|+|+++.. |+++|||+|+|+||||+|||+|+++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~-gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSG-GRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCC-CceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            68999999999999999999532 78999999999999999999999999999999999964

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.83  E-value=2.1e-20  Score=137.69  Aligned_cols=63  Identities=70%  Similarity=1.231  Sum_probs=59.1

Q ss_pred             cceeeEEcCCCceEEEEecCCCCCeEeecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 044938          138 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINS  201 (271)
Q Consensus       138 ~YRGVr~r~~GKW~AeIr~~~k~Gkri~LGtFdT~EEAA~AYD~AA~~~~G~~A~lNFP~~~~~  201 (271)
                      +|+||+++++|||+|+|+++.. |+++|||+|+|+||||+|||.|+++++|.++.+|||.+.|.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~-~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSK-GKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCC-CcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            5999999999999999999754 68999999999999999999999999999999999998885

>PHA00280 putative NHN endonuclease

Probab=99.43  E-value=2.6e-13  Score=112.91  Aligned_cols=58  Identities=14%  Similarity=0.145  Sum_probs=51.9

Q ss_pred             CCCCCCCcceeeEEcC-CCceEEEEecCCCCCeEeecCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 044938          131 VVPSRGKHYRGVRQRP-WGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRAL  192 (271)
Q Consensus       131 ~~~~~~S~YRGVr~r~-~GKW~AeIr~~~k~Gkri~LGtFdT~EEAA~AYD~AA~~~~G~~A~  192 (271)
                      ..+.++|+|+||+|++ .|||+|+|+.   +||+++||.|+++|+|+.||+ ++.++||+||.
T Consensus        61 ~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         61 TPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            3457789999999776 6999999998   899999999999999999997 77899999884

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.23  E-value=2.1e-11  Score=86.45  Aligned_cols=53  Identities=32%  Similarity=0.443  Sum_probs=46.5

Q ss_pred             CcceeeEEcC-CCceEEEEecCCCCC--eEeecCCCCCHHHHHHHHHHHHHHhcCC
Q 044938          137 KHYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRGS  189 (271)
Q Consensus       137 S~YRGVr~r~-~GKW~AeIr~~~k~G--kri~LGtFdT~EEAA~AYD~AA~~~~G~  189 (271)
                      |+|+||++.+ .++|+|+|++...+|  ++++||.|++++||++||+.++.+++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999776 699999999954443  8999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	271
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-25
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		4e-22

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 56/70 (80%)
Query: 134 SRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALL 193
           ++GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET              MRGSRALL
Sbjct: 1   AKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALL 60
Query: 194 NFPLRINSGE 203
           NFPLR+NSGE
Sbjct: 61  NFPLRVNSGE 70

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 49/63 (77%)
Query: 137 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 196
           KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET              MRGSRALLNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
Query: 197 LRI 199
           LR+
Sbjct: 61  LRV 63
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
1gcc_A	63	Ethylene responsive element binding factor 1; tran	3e-42
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  137 bits (348), Expect = 3e-42
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 137 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFP 196
           KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAA+RMRGSRALLNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 197 LRI 199
           LR+
Sbjct: 61  LRV 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 46/323 (14%), Positives = 79/323 (24%), Gaps = 111/323 (34%)

Query: 18  YAVLDSVRQHLLDESETGLSSVSSASSKSNGAPPTYCRSSSFSRLYPCLTDNWGDLPLRE 77
             V D  +  L  E    +  +  +    +G   T        RL+  L         +E
Sbjct: 36  KDVQDMPKSILSKEE---IDHIIMSKDAVSG---TL-------RLFWTLLSK------QE 76

Query: 78  NDSEDMLVFNFLRDALTV--GWVPQEQLAESDRHQVAEAAPAPALPEE----------RG 125
                 +V  F+ + L +   ++    +    R         P++               
Sbjct: 77  E-----MVQKFVEEVLRINYKFL-MSPIKTEQR--------QPSMMTRMYIEQRDRLYND 122

Query: 126 AP--APAVVPSRGKHYRGVRQ-----RP-----------WGK--FAAE-IRDPA---KNG 161
               A   V  R + Y  +RQ     RP            GK   A +         K  
Sbjct: 123 NQVFAKYNVS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 162 ARV-WL--GTFETAED-----AALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRIKSKR 213
            ++ WL      + E        L Y         S    N  LRI+S + E  R+   +
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 214 STPE----------------------------PSSSTDSGSVSPKRRRKVAALASVPVQA 245
                                               TD   +S      +   +      
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHI---SLDHHSM 296

Query: 246 GMKMESGVGQVARVASCTRGDQP 268
            +  +     + +   C   D P
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLP 319

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	91.19

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=7.4e-27  Score=172.22  Aligned_cols=63  Identities=97%  Similarity=1.561  Sum_probs=59.9

Q ss_pred             CcceeeEEcCCCceEEEEecCCCCCeEeecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 044938          137 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRI  199 (271)
Q Consensus       137 S~YRGVr~r~~GKW~AeIr~~~k~Gkri~LGtFdT~EEAA~AYD~AA~~~~G~~A~lNFP~~~  199 (271)
                      .+||||++++||||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.+|.+|||.++
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            479999999999999999999888999999999999999999999999999999999999764

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=91.19  E-value=0.12  Score=39.40  Aligned_cols=28  Identities=21%  Similarity=0.204  Sum_probs=22.2

Q ss_pred             CCCCcceeeEEcC-CCceEEEEecCCCCCeEe
Q 044938          134 SRGKHYRGVRQRP-WGKFAAEIRDPAKNGARV  164 (271)
Q Consensus       134 ~~~S~YRGVr~r~-~GKW~AeIr~~~k~Gkri  164 (271)
                      ...|+|+||+|.+ .+.|.|.-.+   +|+|.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE---TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec---CCeEe
Confidence            3579999999887 5999999998   45553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	271
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-34

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  116 bits (293), Expect = 2e-34
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 137 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFP 196
           KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAA+RMRGSRALLNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 197 LRI 199
           LR+
Sbjct: 61  LRV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2.2e-27  Score=173.93  Aligned_cols=63  Identities=97%  Similarity=1.561  Sum_probs=59.8

Q ss_pred             CcceeeEEcCCCceEEEEecCCCCCeEeecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 044938          137 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRI  199 (271)
Q Consensus       137 S~YRGVr~r~~GKW~AeIr~~~k~Gkri~LGtFdT~EEAA~AYD~AA~~~~G~~A~lNFP~~~  199 (271)
                      .+||||+++++|||+|+|+++.++++++|||+|+|+||||+|||+|+++++|.++.+|||+++
T Consensus         1 ~~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CCcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            369999999999999999999888999999999999999999999999999999999999864