Citrus Sinensis ID: 045016

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLVPIQDC
Secondary Structure (PSIPRED)
cEEEHHHcccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccEEEccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHHHHcccHHHcccEEEEcccccHHHHHHHccccccHHHHccEEEEccccccHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHccHHHHccEEEEccccHHHHHHHHccHHHccHHcccccEEEEcccc
Coil and Loop (DISEMBL)
MIRRFLRARDLDIEKASAMLLKYLSWRrdfvpnglisESEIQNHLAKNILNmqgfdkkgrPILVAFAsrhkpsdgtledFKRFVVYCLDKIcakmpkgheKFVYIGdlqgwgyscSDIRAYLACLSILQdcfperlgklyivHAPKLFMTVWKVVYpfiddntkkKIVFVENKnltstlldeidksqlpdiyggklplvpiqdc
Flexible Loop (DISEMBL)
mirrflrardldieKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGRPILVAFASrhkpsdgtledFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKnltstlldeidksqlpdiyggklplvpiqdc
Low Complexity Region (SEG)
MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLVPIQDC
Disordered region (IsUnstruct)
*****LRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLV*****
Disordered Region (DISOPRED)
MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPL**IQD*
Disordered Region (DISEMBL)
MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLVPIQDC
Disordered Region (DISPRO)
MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLVPIQ**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLVPIQDC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q55CU8	364	Random slug protein 5 OS=	no	no	0.916	0.513	0.315	3e-20
Q99MS0	403	SEC14-like protein 2 OS=R	yes	no	0.921	0.466	0.303	1e-15
P58875	403	SEC14-like protein 2 OS=B	yes	no	0.921	0.466	0.308	1e-15
Q92503	715	SEC14-like protein 1 OS=H	yes	no	0.931	0.265	0.283	2e-15
Q99J08	403	SEC14-like protein 2 OS=M	yes	no	0.921	0.466	0.293	3e-15
O76054	403	SEC14-like protein 2 OS=H	no	no	0.921	0.466	0.289	2e-14
Q0V9N0	707	SEC14-like protein 5 OS=X	no	no	0.936	0.270	0.261	2e-14
O43304	696	SEC14-like protein 5 OS=H	no	no	0.877	0.257	0.261	3e-14
Q9M0R2	668	Patellin-5 OS=Arabidopsis	no	no	0.941	0.287	0.288	1e-13
Q5SPP0	329	Clavesin-2 OS=Danio rerio	no	no	0.936	0.580	0.310	3e-13

>sp|Q55CU8|RSC5_DICDI Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 19/206 (9%)

Query: 4   RFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGRPIL 63
           R+LRAR+  + K+  ML   L WR+ F P  +    +I+   +   + +   DKKGRPI+
Sbjct: 78  RYLRARNYIVSKSEKMLRDTLEWRKKFRPQDIQLGGDIREIGSAGCVYVNKRDKKGRPII 137

Query: 64  VAFASRHKPSDGTLED------FKRFVVYCLDKICAKM--PKGHEKFVYIGDLQGWGYSC 115
            A      P + TL++      FK  +VY L++  ++M  PKG E+F +I D + +G   
Sbjct: 138 FAV-----PRNDTLKNVPSELKFKN-LVYWLEQGFSRMDEPKGIEQFCFIVDYKDFGSGN 191

Query: 116 SDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNL 175
            D++  L  +  L D  PER+G+   +  P LF   WK++ PF+++ T  K+ F+ +K +
Sbjct: 192 MDMKTNLEAMHFLLDHCPERMGQSLFLDPPALFWFAWKIISPFLNEVTLSKVRFINSKKV 251

Query: 176 T-----STLLDEIDKSQLPDIYGGKL 196
                 + LL+ +D   L    GG L
Sbjct: 252 DGKRTFAELLEYVDIENLEQNLGGNL 277

Dictyostelium discoideum (taxid: 44689)

>sp|Q99MS0|S14L2_RAT SEC14-like protein 2 OS=Rattus norvegicus GN=Sec14l2 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 23/211 (10%)

Query: 4   RFLRARDLDIEKASAMLLKYLSWRRDFVPNGLIS---ESEIQNHLAKNILNMQGFDKKGR 60
           R+LRAR  D++K+ AML K++ +R+    + +IS      IQ +L+       G+D  G 
Sbjct: 40  RWLRARSFDLQKSEAMLRKHVEFRKQKDIDKIISWQPPEVIQQYLSGGRC---GYDLDGC 96

Query: 61  PI------------LVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDL 108
           P+            L+  AS+       + D +  +  C  +  AK+ K  E    I D 
Sbjct: 97  PVWYDIIGPLDAKGLLFSASKQDLLRTKMRDCELLLQECTQQ-TAKLGKKIETITMIYDC 155

Query: 109 QGWGYSC---SDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKK 165
           +G G        + AY   L++ ++ +PE L +L++V APKLF   + ++ PF+ ++T+K
Sbjct: 156 EGLGLKHLWKPAVEAYGEFLTMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRK 215

Query: 166 KIVFVENKNLTSTLLDEIDKSQLPDIYGGKL 196
           KI+ V   N    LL  I   QLP  YGG +
Sbjct: 216 KIM-VLGANWKEVLLKHISPDQLPVEYGGTM 245

Carrier protein. Binds to some hydrophobic molecules and promotes their transfer between the different cellular sites. Binds with high affinity to alpha-tocopherol. Also binds with a weaker affinity to other tocopherols and to tocotrienols. May have a transcriptional activatory activity via its association with alpha-tocopherol (By similarity). Probably recognizes and binds some squalene structure, suggesting that it may regulate cholesterol biosynthesis by increasing the transfer of squalene to a metabolic active pool in the cell.

Rattus norvegicus (taxid: 10116)

>sp|P58875|S14L2_BOVIN SEC14-like protein 2 OS=Bos taurus GN=SEC14L2 PE=1 SV=2

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 23/211 (10%)

Query: 4   RFLRARDLDIEKASAMLLKYLSWRRDFVPNGLIS---ESEIQNHLAKNILNMQGFDKKGR 60
           R+LRAR+ +++K+ AML K++ +R+    + ++S      +Q +L+     M G+D +G 
Sbjct: 40  RWLRARNFNLQKSEAMLRKHVEFRKQKDIDNIMSWQPPEVVQQYLSGG---MCGYDLEGS 96

Query: 61  PI------------LVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDL 108
           PI            L+  AS+       + D +  +  C+ +   KM K  E    I D 
Sbjct: 97  PIWYDIIGPLDAKGLLLSASKQDLFKTKMRDCELLLQECV-RQTEKMGKKIEATTLIYDC 155

Query: 109 QGWGYSC---SDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKK 165
           +G G        + AY   L + ++ +PE L +L+IV APKLF   + +V PF+ ++T+K
Sbjct: 156 EGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFIVKAPKLFPVAYNLVKPFLSEDTRK 215

Query: 166 KIVFVENKNLTSTLLDEIDKSQLPDIYGGKL 196
           KI  V   N    LL  I   QLP  YGG +
Sbjct: 216 KIQ-VLGANWKEVLLKYISPDQLPVEYGGTM 245

Carrier protein. Binds to some hydrophobic molecules and promotes their transfer between the different cellular sites. Binds with high affinity to alpha-tocopherol. Also binds with a weaker affinity to other tocopherols and to tocotrienols. May have a transcriptional activatory activity via its association with alpha-tocopherol. Probably recognizes and binds some squalene structure, suggesting that it may regulate cholesterol biosynthesis by increasing the transfer of squalene to a metabolic active pool in the cell.

Bos taurus (taxid: 9913)

>sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 25/215 (11%)

Query: 2   IRRFLRARDLDIEKASAMLLKYLSWRR----DFVPNGLISESEIQNHLAKNILNMQGFDK 57
           I RFLRARD +I+KA  ++ + L+WR+    D++         +Q++ A         DK
Sbjct: 280 ILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILETWTPPQVLQDYYAGG---WHHHDK 336

Query: 58  KGRPILVAFASRHKPSDGTL-----EDFKRFVVYCLDKICAKMPKGHEKF-------VYI 105
            GRP+ V    +   + G +     E   R+V+   ++   +  +  + F         +
Sbjct: 337 DGRPLYVLRLGQMD-TKGLVRALGEEALLRYVLSINEEGLRRCEENTKVFGRPISSWTCL 395

Query: 106 GDLQGWGYSC---SDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDN 162
            DL+G          ++A L  + +++  +PE LG+L I+ AP++F  +W +V PFIDDN
Sbjct: 396 VDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRLLILRAPRVFPVLWTLVSPFIDDN 455

Query: 163 TKKKIVFVENKNLTST--LLDEIDKSQLPDIYGGK 195
           T++K +     +      LLD IDK  +PD   G+
Sbjct: 456 TRRKFLIYAGNDYQGPGGLLDYIDKEIIPDFLSGE 490

Homo sapiens (taxid: 9606)

>sp|Q99J08|S14L2_MOUSE SEC14-like protein 2 OS=Mus musculus GN=Sec14l2 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 23/211 (10%)

Query: 4   RFLRARDLDIEKASAMLLKYLSWRRDFVPNGLIS---ESEIQNHLAKNILNMQGFDKKGR 60
           R+LRAR  D++K+ AML K++ +R+    + +IS      IQ +L+       G+D  G 
Sbjct: 40  RWLRARSFDLQKSEAMLRKHVEFRKQKDIDKIISWQPPEVIQQYLSGGRC---GYDLDGC 96

Query: 61  PI------------LVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDL 108
           P+            L+  AS+       + D +  +  C+ +   K+ K  E    I D 
Sbjct: 97  PVWYDIIGPLDAKGLLFSASKQDLLRTKMRDCELLLQECIQQ-TTKLGKKIETITMIYDC 155

Query: 109 QGWGYSC---SDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKK 165
           +G G        + AY   L++ ++ +PE L +L++V APKLF   + ++ PF+ ++T++
Sbjct: 156 EGLGLKHLWKPAVEAYGEFLTMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRR 215

Query: 166 KIVFVENKNLTSTLLDEIDKSQLPDIYGGKL 196
           KI+ V   N    LL  I   QLP  YGG +
Sbjct: 216 KIM-VLGANWKEVLLKHISPDQLPVEYGGTM 245

Carrier protein. Binds to some hydrophobic molecules and promotes their transfer between the different cellular sites. Binds with high affinity to alpha-tocopherol. Also binds with a weaker affinity to other tocopherols and to tocotrienols. May have a transcriptional activatory activity via its association with alpha-tocopherol. Probably recognizes and binds some squalene structure, suggesting that it may regulate cholesterol biosynthesis by increasing the transfer of squalene to a metabolic active pool in the cell.

Mus musculus (taxid: 10090)

>sp|O76054|S14L2_HUMAN SEC14-like protein 2 OS=Homo sapiens GN=SEC14L2 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 23/211 (10%)

Query: 4   RFLRARDLDIEKASAMLLKYLSWRRDFVPNGLIS---ESEIQNHLAKNILNMQGFDKKGR 60
           R+LRAR  D++K+ AML K++ +R+    + +IS      IQ +L+     M G+D  G 
Sbjct: 40  RWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGG---MCGYDLDGC 96

Query: 61  PI------------LVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDL 108
           P+            L+  AS+       + + +  +  C  +   K+ +  E    I D 
Sbjct: 97  PVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQT-TKLGRKVETITIIYDC 155

Query: 109 QGWGYSC---SDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKK 165
           +G G        + AY   L + ++ +PE L +L++V APKLF   + ++ PF+ ++T+K
Sbjct: 156 EGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRK 215

Query: 166 KIVFVENKNLTSTLLDEIDKSQLPDIYGGKL 196
           KI+ V   N    LL  I   Q+P  YGG +
Sbjct: 216 KIM-VLGANWKEVLLKHISPDQVPVEYGGTM 245

Carrier protein. Binds to some hydrophobic molecules and promotes their transfer between the different cellular sites. Binds with high affinity to alpha-tocopherol. Also binds with a weaker affinity to other tocopherols and to tocotrienols. May have a transcriptional activatory activity via its association with alpha-tocopherol. Probably recognizes and binds some squalene structure, suggesting that it may regulate cholesterol biosynthesis by increasing the transfer of squalene to a metabolic active pool in the cell.

Homo sapiens (taxid: 9606)

>sp|Q0V9N0|S14L5_XENTR SEC14-like protein 5 OS=Xenopus tropicalis GN=sec14l1 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 23/214 (10%)

Query: 2   IRRFLRARDLDIEKASAMLLKYLSWRR----DFVPNGLISESEIQNHLAKNILNMQGFDK 57
           I RFLRARD ++EKA  ML + LSWR+    D++         ++ + A         DK
Sbjct: 276 ILRFLRARDFNMEKAREMLCQSLSWRKQHQVDYILQTWQPPRVLEEYYAGG---WHYHDK 332

Query: 58  KGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSC-- 115
            GRP+ +    +           +  ++  +  I  +  K  E+         W ++C  
Sbjct: 333 DGRPLYILRLGQVDTKGLVKALGEEAILRHVLSINEEGQKRCEENTRQFGRPIWSWTCLV 392

Query: 116 ------------SDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNT 163
                         ++A L  + +++  +PE LG+L IV AP++F  +W +V PFI++N+
Sbjct: 393 DLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRLLIVRAPRVFPVLWTLVSPFINENS 452

Query: 164 KKKIVFVENKNLT--STLLDEIDKSQLPDIYGGK 195
           ++K +     N      + D +DK  +PD  GG+
Sbjct: 453 RQKFLIYSGNNYQGPGGIADYVDKEIVPDFLGGE 486

Xenopus tropicalis (taxid: 8364)

>sp|O43304|S14L5_HUMAN SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE=2 SV=3

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 47/226 (20%)

Query: 2   IRRFLRARDLDIEKASAMLLKYLSWRRD---------FVPNGLISESEIQNHLAKNI--- 49
           I RFLRA D  ++KA  ML + LSWR+          + P  L+ E        ++I   
Sbjct: 267 ILRFLRAHDFHLDKAREMLRQSLSWRKQHQVDLLLQTWQPPALLEEFYAGGWHYQDIDGR 326

Query: 50  ----LNMQGFDKKG-----------RPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAK 94
               L +   D KG           R +L       K  +G+     R +          
Sbjct: 327 PLYILRLGQMDTKGLMKAVGEEALLRHVLSVNEEGQKRCEGSTRQLGRPI---------- 376

Query: 95  MPKGHEKFVYIGDLQGWGYSC---SDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTV 151
                  +  + DL+G          ++A L  + +++D +PE LG+L IV AP++F  +
Sbjct: 377 -----SSWTCLLDLEGLNMRHLWRPGVKALLRMIEVVEDNYPETLGRLLIVRAPRVFPVL 431

Query: 152 WKVVYPFIDDNTKKKIVFVENKNLTST--LLDEIDKSQLPDIYGGK 195
           W ++ PFI++NT++K +     N      L+D +D+  +PD  GG+
Sbjct: 432 WTLISPFINENTRRKFLIYSGSNYQGPGGLVDYLDREVIPDFLGGE 477

Homo sapiens (taxid: 9606)

>sp|Q9M0R2|PATL5_ARATH Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 16/208 (7%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGR 60
           ++ +FLRARD   ++A +ML K L WR DF    L+ E+ + + L K ++ MQG DK+  
Sbjct: 341 VLLKFLRARDFKPQEAYSMLNKTLQWRIDFNIEELLDEN-LGDDLDK-VVFMQGQDKENH 398

Query: 61  PILVAFASRHKPSD---GTLED------FKRFVVYCLDKICAKM---PKGHEKFVYIGDL 108
           P+        +  D    T  D      F R+ +  L+K    +     G      + DL
Sbjct: 399 PVCYNVYGEFQNKDLYQKTFSDEEKRERFLRWRIQFLEKSIRNLDFVAGGVSTICQVNDL 458

Query: 109 QGW-GYSCSDIR-AYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKK 166
           +   G   +++R A    L +LQD +PE + K   ++ P  ++  ++++ PF+   +K K
Sbjct: 459 KNSPGPGKTELRLATKQALHLLQDNYPEFVSKQIFINVPWWYLAFYRIISPFMSQRSKSK 518

Query: 167 IVFVENKNLTSTLLDEIDKSQLPDIYGG 194
           +VF        TLL  I    +P  YGG
Sbjct: 519 LVFAGPSRSAETLLKYISPEHVPVQYGG 546

Carrier protein that may be involved in membrane-trafficking events associated with cell plate formation during cytokinesis. Binds to some hydrophobic molecules such as phosphoinositides and promotes their transfer between the different cellular sites.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5SPP0|CLVS2_DANRE Clavesin-2 OS=Danio rerio GN=clvs2 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 96/206 (46%), Gaps = 15/206 (7%)

Query: 2   IRRFLRARDLDIEKASAMLLKYLSWRR---DFVPNGLISESEIQNHLAKNILN-MQGFDK 57
           I RFLRAR  +  +A  +L +Y  +R+   D   N   ++  I+  L       +   D+
Sbjct: 54  ILRFLRARKFNHFEAFRLLAQYFEYRQQNLDMFKNLKATDPGIKQALKDGFPGVLSNLDR 113

Query: 58  KGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGY-SCS 116
            GR ILV FA+    S  T  D  R ++  L+ +          FV I D   + +   S
Sbjct: 114 YGRKILVLFAANWDQSRYTFVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQAS 173

Query: 117 DIRAYLACLSI--LQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKN 174
            +   +  L+I  LQD FP R G ++ V+ P     ++ V+ PF+ D T+K+I F+   N
Sbjct: 174 KLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVIRPFLKDKTRKRI-FMHGNN 232

Query: 175 LTS---TLLDEIDKSQLPDIYGGKLP 197
           L S    +L EI    LP   GG LP
Sbjct: 233 LNSLHQLILPEI----LPSELGGMLP 254

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
225425276	246	PREDICTED: random slug protein 5 [Vitis	1.0	0.829	0.740	7e-87
118482491	255	unknown [Populus trichocarpa]	0.995	0.796	0.738	3e-86
224057850	231	predicted protein [Populus trichocarpa]	0.995	0.878	0.738	7e-86
15223439	255	protein sec fourteen-like protein-20 [Ar	1.0	0.8	0.730	1e-84
297848338	256	hypothetical protein ARALYDRAFT_470113 [	1.0	0.796	0.720	4e-83
224072465	230	predicted protein [Populus trichocarpa]	0.995	0.882	0.709	4e-82
255543222	257	aspartate semialdehyde dehydrogenase, pu	1.0	0.793	0.691	3e-81
225456509	256	PREDICTED: random slug protein 5 [Vitis	1.0	0.796	0.676	2e-80
449468906	284	PREDICTED: random slug protein 5-like [C	0.990	0.711	0.705	2e-80
217074166	272	unknown [Medicago truncatula]	1.0	0.75	0.671	7e-80

>gi|225425276|ref|XP_002271441.1| PREDICTED: random slug protein 5 [Vitis vinifera] gi|296085533|emb|CBI29265.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (833), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 151/204 (74%), Positives = 173/204 (84%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGR 60
           MIRRFLRARDLDI+KASA+LLKYL WRR F+PNG IS SEI N LA+N L MQG DKKGR
Sbjct: 43  MIRRFLRARDLDIDKASALLLKYLGWRRAFMPNGYISASEIPNELAQNKLFMQGQDKKGR 102

Query: 61  PILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRA 120
           PI V + +RHKP  G LE+FKRFVVY L+KICA MP G EKF+ I D++GWGY+ SDIRA
Sbjct: 103 PITVVYGARHKPYKGNLEEFKRFVVYSLEKICASMPGGEEKFISIADIEGWGYTNSDIRA 162

Query: 121 YLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLL 180
           YLA LSILQDC+PERLGKL++VH P +FMT WKVVYPFID  TKKKI+FVENKN+ STLL
Sbjct: 163 YLAALSILQDCYPERLGKLFLVHVPYVFMTAWKVVYPFIDSKTKKKIIFVENKNIKSTLL 222

Query: 181 DEIDKSQLPDIYGGKLPLVPIQDC 204
            +ID++QLPD+YGGKLPLVPIQD 
Sbjct: 223 GDIDENQLPDVYGGKLPLVPIQDS 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482491|gb|ABK93168.1| unknown [Populus trichocarpa]

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 169/203 (83%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGR 60
           MIRRFLRAR+LDIEKAS + LKYLSWRR  +PNG IS SEI N LA+N L MQGFDK+ R
Sbjct: 52  MIRRFLRARELDIEKASTLFLKYLSWRRSIIPNGFISSSEIPNELAQNKLFMQGFDKQNR 111

Query: 61  PILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRA 120
           PI+V F + HKP  G+LE+FKRFV Y LD+ICA+MP G EKFV I DL+GWGY+ SDIR 
Sbjct: 112 PIVVVFGAGHKPYKGSLEEFKRFVAYTLDRICARMPAGQEKFVSIADLEGWGYTNSDIRG 171

Query: 121 YLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLL 180
           YLA LSILQDCFPERLGKL+IVH P +FMT WKVVYPFID  TKKKI+FVENK L STLL
Sbjct: 172 YLAALSILQDCFPERLGKLFIVHVPYIFMTAWKVVYPFIDSKTKKKIIFVENKKLRSTLL 231

Query: 181 DEIDKSQLPDIYGGKLPLVPIQD 203
            +ID+SQLPD+YGGKL LVPIQD
Sbjct: 232 GDIDESQLPDVYGGKLSLVPIQD 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057850|ref|XP_002299355.1| predicted protein [Populus trichocarpa] gi|222846613|gb|EEE84160.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (824), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 169/203 (83%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGR 60
           MIRRFLRAR+LDIEKAS + LKYLSWRR  +PNG IS SEI N LA+N L MQGFDK+ R
Sbjct: 29  MIRRFLRARELDIEKASTLFLKYLSWRRSIIPNGFISSSEIPNELAQNKLFMQGFDKQNR 88

Query: 61  PILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRA 120
           PI+V F + HKP  G+LE+FKRFV Y LD+ICA+MP G EKFV I DL+GWGY+ SDIR 
Sbjct: 89  PIVVVFGAGHKPYKGSLEEFKRFVAYTLDRICARMPAGQEKFVSIADLEGWGYTNSDIRG 148

Query: 121 YLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLL 180
           YLA LSILQDCFPERLGKL+IVH P +FMT WKVVYPFID  TKKKI+FVENK L STLL
Sbjct: 149 YLAALSILQDCFPERLGKLFIVHVPYIFMTAWKVVYPFIDSKTKKKIIFVENKKLRSTLL 208

Query: 181 DEIDKSQLPDIYGGKLPLVPIQD 203
            +ID+SQLPD+YGGKL LVPIQD
Sbjct: 209 GDIDESQLPDVYGGKLSLVPIQD 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223439|ref|NP_171669.1| protein sec fourteen-like protein-20 [Arabidopsis thaliana] gi|8671832|gb|AAF78395.1|AC009273_1 Strong similarity to polyphosphoinositide binding protein Ssh2 from soybean gb|AF024652. It contains a CRAL/TRIO domain PF|00650. EST gb|AI995792 comes from this gene [Arabidopsis thaliana] gi|21554088|gb|AAM63169.1| polyphosphoinositide binding protein, putative [Arabidopsis thaliana] gi|23297520|gb|AAN12987.1| putative polyphosphoinositide-binding protein [Arabidopsis thaliana] gi|332189193|gb|AEE27314.1| protein sec fourteen-like protein-20 [Arabidopsis thaliana]

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 149/204 (73%), Positives = 168/204 (82%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGR 60
           MIRRFLRARDLDIEKAS M L YL+W+R  +P G I E+EI N L+ N + MQG DK GR
Sbjct: 52  MIRRFLRARDLDIEKASTMFLNYLTWKRSMLPKGHIPEAEIANDLSHNKMCMQGHDKMGR 111

Query: 61  PILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRA 120
           PI VA  +RH PS G  ++FKRFVVY L+KICA+MP+G EKFV IGDLQGWGYS  DIR 
Sbjct: 112 PIAVAIGNRHNPSKGNPDEFKRFVVYTLEKICARMPRGQEKFVAIGDLQGWGYSNCDIRG 171

Query: 121 YLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLL 180
           YLA LS LQDC+PERLGKLYIVHAP +FMT WKV+YPFID NTKKKIVFVENK LT TLL
Sbjct: 172 YLAALSTLQDCYPERLGKLYIVHAPYIFMTAWKVIYPFIDANTKKKIVFVENKKLTPTLL 231

Query: 181 DEIDKSQLPDIYGGKLPLVPIQDC 204
           ++ID+SQLPDIYGGKLPLVPIQ+ 
Sbjct: 232 EDIDESQLPDIYGGKLPLVPIQET 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848338|ref|XP_002892050.1| hypothetical protein ARALYDRAFT_470113 [Arabidopsis lyrata subsp. lyrata] gi|297337892|gb|EFH68309.1| hypothetical protein ARALYDRAFT_470113 [Arabidopsis lyrata subsp. lyrata]

 Score =  312 bits (800), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 147/204 (72%), Positives = 167/204 (81%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGR 60
           MIRRFLRARD DIEKAS M LKYL+W+R  +P G I E+EI N L+ N + MQG DK GR
Sbjct: 53  MIRRFLRARDHDIEKASTMFLKYLTWKRSMLPKGHIPEAEIANDLSHNKVCMQGHDKMGR 112

Query: 61  PILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRA 120
           PI+VA  +RH PS G  ++FKRF VY L+KICA+MP+G EKFV IGDLQGWGYS  DIR 
Sbjct: 113 PIVVAIGNRHNPSKGNPDEFKRFFVYTLEKICARMPRGQEKFVSIGDLQGWGYSNCDIRG 172

Query: 121 YLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLL 180
           YLA LS LQDC+PERLGKLYIVHAP +FMT WKV+YP ID NTKKKIVFVENK LT TLL
Sbjct: 173 YLAALSTLQDCYPERLGKLYIVHAPYIFMTAWKVIYPLIDANTKKKIVFVENKKLTPTLL 232

Query: 181 DEIDKSQLPDIYGGKLPLVPIQDC 204
           ++ID+SQLPDIYGGKLPLVPIQ+ 
Sbjct: 233 EDIDESQLPDIYGGKLPLVPIQET 256

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072465|ref|XP_002303745.1| predicted protein [Populus trichocarpa] gi|222841177|gb|EEE78724.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 144/203 (70%), Positives = 166/203 (81%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGR 60
           MIRRFLRAR+LDIEKAS +  KYLSWRR F+PNG I+ SEI N LA+N   MQG DK+ R
Sbjct: 28  MIRRFLRARELDIEKASILFQKYLSWRRSFIPNGFIAPSEIPNELAQNKFFMQGADKQNR 87

Query: 61  PILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRA 120
           P++V F +RHKP  G+ E+FKRFVVY L++ICA MP G EKFV I DL+GWGYS SDIR 
Sbjct: 88  PVVVVFGARHKPYKGSFEEFKRFVVYTLERICAIMPAGEEKFVSIADLKGWGYSNSDIRG 147

Query: 121 YLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLL 180
           YLA LSILQDC+PERLGKL+IVH P +FMT WKVV PFID  TK KI+FVENK L STLL
Sbjct: 148 YLAALSILQDCYPERLGKLFIVHVPYIFMTAWKVVSPFIDRKTKNKIIFVENKKLKSTLL 207

Query: 181 DEIDKSQLPDIYGGKLPLVPIQD 203
           ++ID+SQLPD+YGGKL LVPIQD
Sbjct: 208 EDIDESQLPDVYGGKLSLVPIQD 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543222|ref|XP_002512674.1| aspartate semialdehyde dehydrogenase, putative [Ricinus communis] gi|223548635|gb|EEF50126.1| aspartate semialdehyde dehydrogenase, putative [Ricinus communis]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 141/204 (69%), Positives = 166/204 (81%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGR 60
           MIRRFLRAR+ DIEKAS +LLKYLSWRR F+PNG +  SEI   LA+N L MQG DKK  
Sbjct: 54  MIRRFLRAREHDIEKASNLLLKYLSWRRSFIPNGSVYPSEIPKELAQNKLFMQGVDKKNH 113

Query: 61  PILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRA 120
           PI+V F ++HKP  G LE+FKRFV + LD+ICA+MP G EKFV I D++GWGY+ SDIR 
Sbjct: 114 PIVVVFGAKHKPYKGNLEEFKRFVAFTLDRICARMPDGQEKFVAIADIEGWGYTNSDIRG 173

Query: 121 YLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLL 180
           YLA LSILQD +PERL KL+IVH P +FMT WKV+YPFID  TKKKI+FVENK L+STLL
Sbjct: 174 YLAALSILQDYYPERLAKLFIVHVPYIFMTAWKVIYPFIDSKTKKKIIFVENKKLSSTLL 233

Query: 181 DEIDKSQLPDIYGGKLPLVPIQDC 204
            +ID+SQLPD+YGG+LPLVPIQD 
Sbjct: 234 VDIDESQLPDVYGGRLPLVPIQDS 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456509|ref|XP_002284696.1| PREDICTED: random slug protein 5 [Vitis vinifera] gi|147860850|emb|CAN83160.1| hypothetical protein VITISV_022555 [Vitis vinifera] gi|297734520|emb|CBI15767.3| unnamed protein product [Vitis vinifera]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 138/204 (67%), Positives = 167/204 (81%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGR 60
           MIRRFLRARDLD+EKASA+ L+YL WR+ FVPNG IS S+++N +A+N + +QG DK+GR
Sbjct: 53  MIRRFLRARDLDVEKASALFLRYLKWRQTFVPNGSISLSQVRNEVAQNKMFLQGLDKQGR 112

Query: 61  PILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRA 120
           PI V   ++H    G+L++FKRF+VY  DKIC +MP G EKFV IGDL+GWGYS SD+RA
Sbjct: 113 PISVVLGAKHFQYQGSLDEFKRFLVYAFDKICTRMPPGQEKFVVIGDLEGWGYSNSDMRA 172

Query: 121 YLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLL 180
           YL  LSILQD +PERLGKL+I+HAP +FM +WK+VYPFID NTKKKIV VE   L STLL
Sbjct: 173 YLGALSILQDYYPERLGKLFIIHAPYIFMAIWKIVYPFIDKNTKKKIVLVEKTKLRSTLL 232

Query: 181 DEIDKSQLPDIYGGKLPLVPIQDC 204
           +EID+SQLP IYGGKLPLVPIQD 
Sbjct: 233 EEIDESQLPQIYGGKLPLVPIQDS 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468906|ref|XP_004152162.1| PREDICTED: random slug protein 5-like [Cucumis sativus] gi|449484780|ref|XP_004156977.1| PREDICTED: random slug protein 5-like [Cucumis sativus]

 Score =  303 bits (776), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 144/204 (70%), Positives = 167/204 (81%), Gaps = 2/204 (0%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGR 60
           MIRRFLRARDLDIEKASAM LKYLSWRR  +PNG IS SEI  +L+ N L MQG DKKGR
Sbjct: 83  MIRRFLRARDLDIEKASAMFLKYLSWRRSAIPNGFISPSEISTNLSHNKLFMQGVDKKGR 142

Query: 61  PILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRA 120
           PI+V + +RHK   G +E+F R+V++ L++I ++MP G EKFV IGDLQGWGYS SDIR 
Sbjct: 143 PIIVGYGNRHK--QGNIEEFIRYVIFVLEQISSRMPSGQEKFVCIGDLQGWGYSNSDIRG 200

Query: 121 YLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLL 180
           Y A L ILQDC+PERLGKLYIVH P +FMT WK+VYPFID  TKKKI FVE+K L STLL
Sbjct: 201 YRASLQILQDCYPERLGKLYIVHVPYIFMTAWKMVYPFIDKKTKKKICFVEDKKLRSTLL 260

Query: 181 DEIDKSQLPDIYGGKLPLVPIQDC 204
           ++ID+SQLPD+YGGKL LVPIQDC
Sbjct: 261 NDIDESQLPDVYGGKLSLVPIQDC 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074166|gb|ACJ85443.1| unknown [Medicago truncatula]

 Score =  302 bits (773), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 137/204 (67%), Positives = 171/204 (83%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGR 60
           MIRRFLRARDLD++KASAM LKY+ WR+ FVP+G +S SEI + LA+  + +QG DKKGR
Sbjct: 69  MIRRFLRARDLDVDKASAMFLKYMKWRKSFVPSGSVSPSEIADDLAQEKIYVQGLDKKGR 128

Query: 61  PILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRA 120
           PI+VAFA++H  +   L+ FKR+VV+ L+K+ ++MP G EKFV I D++GWGY+ SDIR 
Sbjct: 129 PIIVAFAAKHFQNKNGLDAFKRYVVFALEKLISRMPPGEEKFVSIADIKGWGYANSDIRG 188

Query: 121 YLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLL 180
           YL  L+ILQD +PERLGKL+IVHAP +FM VWK++YPFIDDNTKKKIVFVENK L +TLL
Sbjct: 189 YLGALTILQDYYPERLGKLFIVHAPYMFMKVWKIIYPFIDDNTKKKIVFVENKKLEATLL 248

Query: 181 DEIDKSQLPDIYGGKLPLVPIQDC 204
           +EID+SQLP+IYGGKLPLVPIQD 
Sbjct: 249 EEIDESQLPEIYGGKLPLVPIQDS 272

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2198135	255	AT1G01630 "AT1G01630" [Arabido	0.995	0.796	0.733	1.1e-78
TAIR|locus:2006732	252	AT1G14820 "AT1G14820" [Arabido	0.985	0.797	0.391	5.4e-31
TAIR|locus:2015066	314	AT1G22180 "AT1G22180" [Arabido	0.926	0.601	0.311	3.4e-22
DICTYBASE|DDB_G0275959	247	DDB_G0275959 "cellular retinal	0.931	0.769	0.321	2.4e-21
TAIR|locus:2025202	296	AT1G75170 "AT1G75170" [Arabido	0.936	0.645	0.318	2.4e-21
TAIR|locus:2138606	301	AT4G08690 "AT4G08690" [Arabido	0.931	0.631	0.290	3.9e-21
DICTYBASE|DDB_G0269182	364	rsc5 "cellular retinaldehyde-b	0.941	0.527	0.308	8e-21
TAIR|locus:2115320	294	AT4G36640 [Arabidopsis thalian	0.946	0.656	0.297	4.4e-20
UNIPROTKB|E1BWX8	681	SEC14L1 "Uncharacterized prote	0.382	0.114	0.4	2.9e-18
UNIPROTKB|F1P060	719	SEC14L5 "Uncharacterized prote	0.377	0.107	0.379	3.4e-18

TAIR|locus:2198135 AT1G01630 "AT1G01630" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 149/203 (73%), Positives = 168/203 (82%)

Query:     1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGR 60
             MIRRFLRARDLDIEKAS M L YL+W+R  +P G I E+EI N L+ N + MQG DK GR
Sbjct:    52 MIRRFLRARDLDIEKASTMFLNYLTWKRSMLPKGHIPEAEIANDLSHNKMCMQGHDKMGR 111

Query:    61 PILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRA 120
             PI VA  +RH PS G  ++FKRFVVY L+KICA+MP+G EKFV IGDLQGWGYS  DIR 
Sbjct:   112 PIAVAIGNRHNPSKGNPDEFKRFVVYTLEKICARMPRGQEKFVAIGDLQGWGYSNCDIRG 171

Query:   121 YLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLL 180
             YLA LS LQDC+PERLGKLYIVHAP +FMT WKV+YPFID NTKKKIVFVENK LT TLL
Sbjct:   172 YLAALSTLQDCYPERLGKLYIVHAPYIFMTAWKVIYPFIDANTKKKIVFVENKKLTPTLL 231

Query:   181 DEIDKSQLPDIYGGKLPLVPIQD 203
             ++ID+SQLPDIYGGKLPLVPIQ+
Sbjct:   232 EDIDESQLPDIYGGKLPLVPIQE 254

GO:0005215 "transporter activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2006732 AT1G14820 "AT1G14820" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 81/207 (39%), Positives = 109/207 (52%)

Query:     2 IRRFLRARDLDIEKASAMLLKYLSWRRDFVP-NGLISESEIQNHLAKNILNMQGFDKKGR 60
             + RFL AR +D  KA+ M + +  WR   VP  G I ESE+Q+ L    + +QG  K G 
Sbjct:    31 LMRFLVARSMDPVKAAKMFVDWQKWRASMVPPTGFIPESEVQDELEFRKVCLQGPTKSGH 90

Query:    61 PILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHE----KFVYIGDLQGWGYSCS 116
             P+++   S+H  S     +FK+FVVY LDK  A    G E    K V + DL    Y   
Sbjct:    91 PLVLVITSKHFASKDPA-NFKKFVVYALDKTIASGNNGKEVGGEKLVAVIDLANITYKNL 149

Query:   117 DIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLT 176
             D R  +     LQ  +PERL K YI+H P  F+TVWK V  F++  T++KIV V +    
Sbjct:   150 DARGLITGFQFLQSYYPERLAKCYILHMPGFFVTVWKFVCRFLEKATQEKIVIVTDGEEQ 209

Query:   177 STLLDEIDKSQLPDIYGGKLPLVPIQD 203
                 +EI    LP+ YGG+  L  IQD
Sbjct:   210 RKFEEEIGADALPEEYGGRAKLTAIQD 236

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=ISS

TAIR|locus:2015066 AT1G22180 "AT1G22180" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 62/199 (31%), Positives = 104/199 (52%)

Query:     2 IRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGRP 61
             I R+L AR+  ++KA+ ML + L WR  + P  +  E   +      I      DK GR 
Sbjct:    49 ITRYLAARNGHVKKATKMLKETLKWRAQYKPEEIRWEEIAREAETGKIYRANCTDKYGRT 108

Query:    62 ILVAFASRHKPSDGTLEDFK---RFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDI 118
             +LV      +PS    + +K   R +VYC++     +P   E+ V++ D  G+  S   +
Sbjct:   109 VLVM-----RPSCQNTKSYKGQIRILVYCMENAILNLPDNQEQMVWLIDFHGFNMSHISL 163

Query:   119 RAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFV-ENKNLTS 177
             +       +LQ+ +PERLG   + + PK+F + +K+V PF++  T  K+ FV  + NL++
Sbjct:   164 KVSRETAHVLQEHYPERLGLAIVYNPPKIFESFYKMVKPFLEPKTSNKVKFVYSDDNLSN 223

Query:   178 TLLDEI-DKSQLPDIYGGK 195
              LL+++ D  QL   +GGK
Sbjct:   224 KLLEDLFDMEQLEVAFGGK 242

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031348 "negative regulation of defense response" evidence=RCA

DICTYBASE|DDB_G0275959 DDB_G0275959 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 63/196 (32%), Positives = 97/196 (49%)

Query:     1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGL--ISESEIQNHLAKNILNMQGFDKK 58
             M  RFLRAR  +++ +  ML + L +R  F   G+  I+ES + N L        G DK 
Sbjct:    42 MTLRFLRARKWNLKDSFDMLYEALKFRATFQDVGVEGITESMVVNELKSGKSYFHGVDKG 101

Query:    59 GRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDI 118
             GRP+ +   SRH   +  L +  R+ VY ++   + +  G E    I D+  +     D 
Sbjct:   102 GRPVCIVKTSRHDSYNRDLNESMRYCVYVMENGKSMLKDGIETCTLIFDMSDFSSKNMDY 161

Query:   119 RAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTST 178
                   + + Q  +PE L K  I++AP +FM +W ++  ++D NT  K+ FV+ K L   
Sbjct:   162 PLVKFMVELFQKFYPESLQKCLILNAPWIFMGIWHIIKHWLDPNTASKVSFVKTKQL--- 218

Query:   179 LLDEIDKSQLPDIYGG 194
              +D I K QL   YGG
Sbjct:   219 -VDYIPKDQLESSYGG 233

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2025202 AT1G75170 "AT1G75170" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 63/198 (31%), Positives = 101/198 (51%)

Query:     2 IRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGF-DKKGR 60
             ++R+L AR+ ++ KA  ML + L WR  F P   I  +E+        +   GF D+ GR
Sbjct:    47 LKRYLEARNWNVGKAKKMLEETLKWRSSFKPEE-IRWNEVSGEGETGKVYKAGFHDRHGR 105

Query:    61 PILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS-DIR 119
              +L+           +LE+  + +VY ++     +P+  E+  ++ D  GW  S S  I+
Sbjct:   106 TVLILRPGLQNTK--SLENQMKHLVYLIENAILNLPEDQEQMSWLIDFTGWSMSTSVPIK 163

Query:   120 AYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTL 179
             +    ++ILQ+ +PERL   ++ + P+LF   WK+V  FID  T  K+ FV  KN  S  
Sbjct:   164 SARETINILQNHYPERLAVAFLYNPPRLFEAFWKIVKYFIDAKTFVKVKFVYPKNSESVE 223

Query:   180 LDE--IDKSQLPDIYGGK 195
             L     D+  LP  +GGK
Sbjct:   224 LMSTFFDEENLPTEFGGK 241

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=ISS

TAIR|locus:2138606 AT4G08690 "AT4G08690" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 57/196 (29%), Positives = 99/196 (50%)

Query:     2 IRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGRP 61
             + R+LRAR+  ++KA+ ML + L WR  + P  +  E          I      DK GRP
Sbjct:    46 VLRYLRARNWHVKKATKMLKETLKWRVQYKPEEICWEEVAGEAETGKIYRSSCVDKLGRP 105

Query:    62 ILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRAY 121
             +L+   S       +++   R++VYC++     +P G E+ V++ D  G+  +   +R  
Sbjct:   106 VLIMRPSVENSK--SVKGQIRYLVYCMENAVQNLPPGEEQMVWMIDFHGYSLANVSLRTT 163

Query:   122 LACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFV--ENKNLTSTL 179
                  +LQ+ +PERL    + + PK F   WKV  PF++  T+ K+ FV  ++ N T  +
Sbjct:   164 KETAHVLQEHYPERLAFAVLYNPPKFFEPFWKVARPFLEPKTRNKVKFVYSDDPN-TKVI 222

Query:   180 LDE-IDKSQLPDIYGG 194
             ++E  D  ++   +GG
Sbjct:   223 MEENFDMEKMELAFGG 238

GO:0005215 "transporter activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0042546 "cell wall biogenesis" evidence=RCA

DICTYBASE|DDB_G0269182 rsc5 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 62/201 (30%), Positives = 104/201 (51%)

Query:     4 RFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGRPIL 63
             R+LRAR+  + K+  ML   L WR+ F P  +    +I+   +   + +   DKKGRPI+
Sbjct:    78 RYLRARNYIVSKSEKMLRDTLEWRKKFRPQDIQLGGDIREIGSAGCVYVNKRDKKGRPII 137

Query:    64 VAFASRHKPSDGTLEDFK-RFVVYCLDKICAKM--PKGHEKFVYIGDLQGWGYSCSDIRA 120
              A   R+        + K + +VY L++  ++M  PKG E+F +I D + +G    D++ 
Sbjct:   138 FA-VPRNDTLKNVPSELKFKNLVYWLEQGFSRMDEPKGIEQFCFIVDYKDFGSGNMDMKT 196

Query:   121 YLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLT---- 176
              L  +  L D  PER+G+   +  P LF   WK++ PF+++ T  K+ F+ +K +     
Sbjct:   197 NLEAMHFLLDHCPERMGQSLFLDPPALFWFAWKIISPFLNEVTLSKVRFINSKKVDGKRT 256

Query:   177 -STLLDEIDKSQLPDIYGGKL 196
              + LL+ +D   L    GG L
Sbjct:   257 FAELLEYVDIENLEQNLGGNL 277

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2115320 AT4G36640 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 60/202 (29%), Positives = 104/202 (51%)

Query:     2 IRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGF-DKKGR 60
             +RRFL AR+ D+EKA  M+ + L WR  + P   I  +++ +       +   F D++GR
Sbjct:    44 LRRFLDARNWDVEKAKKMIQETLKWRSTYKPQE-IRWNQVAHEGETGKASRASFHDRQGR 102

Query:    61 PILVAFASRHKPSDGTLEDFK-RFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSD-I 118
              +L+    R    + T ++   R +VY L+     +PKG ++  ++ D  GW  + +  +
Sbjct:   103 VVLIM---RPAMQNSTSQEGNIRHLVYLLENAIINLPKGQKQMSWLIDFTGWSMAVNPPM 159

Query:   119 RAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTST 178
             +     + ILQ+ +PERLG  ++ + P+LF  V++    F+D  T +K+ FV  K+  S 
Sbjct:   160 KTTREIIHILQNYYPERLGIAFLYNPPRLFQAVYRAAKYFLDPRTAEKVKFVYPKDKASD 219

Query:   179 LL--DEIDKSQLPDIYGGKLPL 198
              L     D   LP  +GG+  L
Sbjct:   220 ELMTTHFDVENLPKEFGGEATL 241

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

UNIPROTKB|E1BWX8 SEC14L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
 Identities = 32/80 (40%), Positives = 50/80 (62%)

Query:   118 IRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTS 177
             ++A L  + +++  +PE LG+L I+ AP++F  +W +V PFIDDNT+KK +     +   
Sbjct:   377 VKALLRIIEVVEANYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRKKFLIYAGNDYQG 436

Query:   178 T--LLDEIDKSQLPDIYGGK 195
                LLD IDK  +PD  GG+
Sbjct:   437 PGGLLDYIDKEIIPDFLGGE 456

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1P060 SEC14L5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
 Identities = 30/79 (37%), Positives = 50/79 (63%)

Query:   118 IRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTS 177
             ++A L  + +++D +PE LG+L IV AP++F  +W +V PFI++NT++K +     N   
Sbjct:   416 VKALLRIIEVVEDNYPETLGRLLIVRAPRVFPVLWTLVSPFINENTRQKFLIYSGNNYQG 475

Query:   178 T--LLDEIDKSQLPDIYGG 194
                L+D +DK  +PD  GG
Sbjct:   476 PGGLVDYVDKEVIPDFLGG 494

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006206001 SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (204 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
smart00516	158	smart00516, SEC14, Domain in homologues of a S	6e-44
cd00170	157	cd00170, SEC14, Sec14p-like lipid-binding domain	7e-42
pfam00650	152	pfam00650, CRAL_TRIO, CRAL/TRIO domain	3e-40
pfam13716	149	pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain	8e-15
pfam03765	48	pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma	4e-05
smart01100	48	smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom	4e-04

>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S

 Score =  143 bits (363), Expect = 6e-44
 Identities = 64/147 (43%), Positives = 89/147 (60%), Gaps = 3/147 (2%)

Query: 53  QGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGH--EKFVYIGDLQG 110
           +G+DK GRP+L+  A R      TLE+  R++VY L+KI  +  K    E F  I DL+G
Sbjct: 13  RGYDKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQEEKKTGGIEGFTVIFDLKG 72

Query: 111 WGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFV 170
              S  D+      L ILQD +PERLGK+YI++ P  F  +WK++ PF+D+ T++KI FV
Sbjct: 73  LSMSNPDLSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFLDEKTREKIRFV 132

Query: 171 ENKNLTSTLLDEIDKSQLPDIYGGKLP 197
            N +    LL+ IDK QLP+  GG L 
Sbjct: 133 GNDSK-EELLEYIDKEQLPEELGGTLD 158

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158

>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain

 Score =  138 bits (349), Expect = 7e-42
 Identities = 59/147 (40%), Positives = 83/147 (56%), Gaps = 5/147 (3%)

Query: 52  MQGFDKKGRPILVAFASRHKPSD-GTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQG 110
           + G DK+GRP+L+  A     S     E+  R++VY L+K+  +  +  E FV I DL+G
Sbjct: 13  LGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKG 72

Query: 111 WGYS--CSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIV 168
              S    D       L ILQD +PERL  +YI++ P  F  +WK+V PF+ + T+KKIV
Sbjct: 73  LSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIV 132

Query: 169 FVENKNLTSTLLDEIDKSQLPDIYGGK 195
           F+ +      LL  IDK QLP+ YGG 
Sbjct: 133 FLGSDK--EELLKYIDKEQLPEEYGGT 157

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157

>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain

 Score =  133 bits (338), Expect = 3e-40
 Identities = 61/146 (41%), Positives = 83/146 (56%), Gaps = 5/146 (3%)

Query: 54  GFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGH-EKFVYIGDLQGWG 112
           G DK+GRP+L     RH P   +LE+  RF+V  L++    +P+G  E    I D++G  
Sbjct: 8   GRDKEGRPVLYLRPGRHDPKKSSLEELVRFLVLVLERALLLLPEGQIEGITVIIDMKGLS 67

Query: 113 YSCSDIRAY---LACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVF 169
            S  D          L ILQD +PERLGK+ IV+AP +F  +WK++ PF+D  T++KI F
Sbjct: 68  LSNMDKWPISFLKKILKILQDNYPERLGKILIVNAPWIFNVIWKLIKPFLDPKTREKIHF 127

Query: 170 VENKNLTSTLLDEIDKSQLPDIYGGK 195
            +N NL   LL  I   QLP  YGG 
Sbjct: 128 HKNSNL-EELLKYIPPEQLPKEYGGT 152

Length = 152

>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain

 Score = 68.1 bits (167), Expect = 8e-15
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 53  QGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWG 112
            G DK+GRP+LV F ++  P+   L+D  R + Y L  +  ++    + FV + D  G  
Sbjct: 6   GGRDKEGRPVLV-FDAKRLPAS-DLDDLDRLLFYLLSILSEELKP--KGFVVVIDHTGVT 61

Query: 113 YSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFID--DNTKKKIVFV 170
            +            +L   FP+ L  +YIVH         K +          KKK+++V
Sbjct: 62  RNKPSWSWLKKLYKLLPRAFPKNLKAVYIVHPSTFLKKFLKTLGRLFSSKKLFKKKVIYV 121

Query: 171 ENKNLTSTLLDEIDKSQLPDIYGGKLP 197
            +    S L + ID +QLP   GG L 
Sbjct: 122 SSL---SELSEYIDPTQLPLELGGVLS 145

This family includes divergent members of the CRAL-TRIO domain family. This family includes ECM25 that contains a divergent CRAL-TRIO domain identified by Gallego and colleagues. Length = 149

>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 1  MIRRFLRARDLDIEKASAMLLKY 23
           + RFLRAR  D+EKA  ML K 
Sbjct: 26 FLLRFLRARKFDVEKAIKMLKKT 48

This all-alpha domain is found to the N-terminus of pfam00650. Length = 48

>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 14/23 (60%), Positives = 16/23 (69%)

Query: 1  MIRRFLRARDLDIEKASAMLLKY 23
           + RFLRAR  D+EKA  ML KY
Sbjct: 26 FLLRFLRARKFDVEKAKEMLEKY 48

Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG1470	324	consensus Phosphatidylinositol transfer protein PD	100.0
KOG1471	317	consensus Phosphatidylinositol transfer protein SE	100.0
PF00650	159	CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T	100.0
smart00516	158	SEC14 Domain in homologues of a S. cerevisiae phos	100.0
cd00170	157	SEC14 Sec14p-like lipid-binding domain. Found in s	99.97
PF13716	149	CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q	99.78
KOG4406	467	consensus CDC42 Rho GTPase-activating protein [Sig	98.92
PF03765	55	CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr	98.26
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	85.91
PF11964	109	SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 Th	85.55
KOG1534	273	consensus Putative transcription factor FET5 [Tran	81.16

>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]

Probab=100.00  E-value=4.7e-48  Score=293.30  Aligned_cols=196  Identities=41%  Similarity=0.722  Sum_probs=187.8

Q ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccCCCCCChhhHHHHHhhCcceeeCCCCCCCcEEEEecCCCCCCCCCHHHH
Q 045016            1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFDKKGRPILVAFASRHKPSDGTLEDF   80 (204)
Q Consensus         1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~~~~~~~~~~~~~l~~~~~~~~g~d~~g~pV~~~~~~~~~~~~~~~~~~   80 (204)
                      |++|||||++|||++|.+++.++++||+.+++...+..+++..++..|.+|+.|.|++||||+|++++.+.++..+.++.
T Consensus        51 cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~qn~~t~~~~  130 (324)
T KOG1470|consen   51 CLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGKAYILGHDKDGRPVLYLRPRPHRQNTKTQKEL  130 (324)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCcEEEecccCCCCeEEEEecCCCCCCCCCHHHH
Confidence            68999999999999999999999999999999766888889999999999999999999999999999998999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhccCCC
Q 045016           81 KRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFID  160 (204)
Q Consensus        81 ~~~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k~~l~  160 (204)
                      .++++|+||.++..++.+++++++++|++|++++|++++..+.+++++++||||||++.+++|+||++..+|+++|||++
T Consensus       131 ~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflD  210 (324)
T KOG1470|consen  131 ERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSNPDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLD  210 (324)
T ss_pred             HHHHHHHHHHHHHhCCCCcceEEEEEecccCcccCCCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceEEEEcCCcchHHHhhcCCCCCCccccCCCCCCc
Q 045016          161 DNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLV  199 (204)
Q Consensus       161 ~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~~~~  199 (204)
                      ++|+.||++..+.   .++.++||++++|+.+||+..+.
T Consensus       211 p~t~~Kv~F~~~~---~~l~~~~d~~~l~s~~GG~~~~~  246 (324)
T KOG1470|consen  211 PKTASKVKFVEPK---DDLSEYFDESQLPSLFGGKLLFE  246 (324)
T ss_pred             hhhhceeEEecCh---hHHHhhCCccccchhhCCCcccc
Confidence            9999999999874   56999999999999999977653

>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-38  Score=250.59  Aligned_cols=198  Identities=33%  Similarity=0.524  Sum_probs=163.4

Q ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccCCCCCChhhHHHHHh-hCcceeeCCCCCCCcEEEEecCCCCCCC----C
Q 045016            1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLA-KNILNMQGFDKKGRPILVAFASRHKPSD----G   75 (204)
Q Consensus         1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~~~~~~~~~~~~~l~-~~~~~~~g~d~~g~pV~~~~~~~~~~~~----~   75 (204)
                      +|+||||+++||+++|.+++.+++.||+++..+...........+. ......+|.|++|+||.+.+.+..+...    .
T Consensus        47 ~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~  126 (317)
T KOG1471|consen   47 NLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRT  126 (317)
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeec
Confidence            4899999999999999999999999999988876544322222222 3456788999999999999999886432    3


Q ss_pred             CHHHHHH--------HHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCCc---cHHHHHHHHHHHhhchhccccceEEEeC
Q 045016           76 TLEDFKR--------FVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS---DIRAYLACLSILQDCFPERLGKLYIVHA  144 (204)
Q Consensus        76 ~~~~~~~--------~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~~---~~~~~~~~~~~~~~~yP~~l~~i~ivn~  144 (204)
                      ...+..+        .+...+|........++.|++.|+|++|++++++   .++.+++++.+++++||++++++||||+
T Consensus       127 ~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~  206 (317)
T KOG1471|consen  127 GSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINA  206 (317)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcC
Confidence            4444444        4445555444444567899999999999999987   5788999999999999999999999999


Q ss_pred             ChhHHHHHHHhccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCCCCCc
Q 045016          145 PKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLV  199 (204)
Q Consensus       145 p~~~~~~~~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~~~~  199 (204)
                      |++++++|++++|||++++++||+++++ ++.++|.++|+++.||.+|||++.+.
T Consensus       207 P~~f~~~~~~ikpfL~~kt~~ki~~~~~-~~~~~L~k~i~~~~LP~~yGG~~~~~  260 (317)
T KOG1471|consen  207 PTIFSALWKVVKPFLDEKTRKKIHVLHS-KDKESLLKYIPPEVLPEEYGGTCGDL  260 (317)
T ss_pred             chhHHHHHHHHhccCCHHHHhhheecCC-CchhhhhhhCCHhhCccccCCCcccc
Confidence            9999999999999999999999995543 45799999999999999999999975

>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=100.00  E-value=5.6e-38  Score=223.82  Aligned_cols=152  Identities=39%  Similarity=0.671  Sum_probs=130.6

Q ss_pred             HHhhCcceeeCCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCC--CCCceEEEEEeCCCCCCCCcc---H
Q 045016           44 HLAKNILNMQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMP--KGHEKFVYIGDLQGWGYSCSD---I  118 (204)
Q Consensus        44 ~l~~~~~~~~g~d~~g~pV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~iiD~~g~~~~~~~---~  118 (204)
                      ..+.+..+++|+|++||||++++++++++...+.+++.+++++.+|.+++.++  .+..|+++|+|++|+++++++   .
T Consensus         3 ~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~~   82 (159)
T PF00650_consen    3 ILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWPI   82 (159)
T ss_dssp             HHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHHH
T ss_pred             HHCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccchh
Confidence            45678889999999999999999999998888899999999999999987654  467999999999999999987   8


Q ss_pred             HHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCC
Q 045016          119 RAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGK  195 (204)
Q Consensus       119 ~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~  195 (204)
                      +.++.+++.++++||++++++||+|+|++++++|+++++|+++++++||+++++.++.++|.+++++++||++||||
T Consensus        83 ~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~lP~~~GG~  159 (159)
T PF00650_consen   83 SFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQLPVEYGGT  159 (159)
T ss_dssp             HHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGSBGGGTSS
T ss_pred             hhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHCchhcCCC
Confidence            99999999999999999999999999999999999999999999999999998777778999999999999999997

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....

>smart00516 SEC14 Domain in homologues of a S

Probab=100.00  E-value=1.5e-33  Score=200.80  Aligned_cols=143  Identities=43%  Similarity=0.753  Sum_probs=135.3

Q ss_pred             CCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHh--CCCCCceEEEEEeCCCCCCCCccHHHHHHHHHHHhhc
Q 045016           54 GFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAK--MPKGHEKFVYIGDLQGWGYSCSDIRAYLACLSILQDC  131 (204)
Q Consensus        54 g~d~~g~pV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~  131 (204)
                      |.|++||||++++++.+++...+.+++++++++.+|.+.+.  .+.+..|+++|+|++|+++++++.+.++.+++.++.+
T Consensus        14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~lk~~~~~~~~~   93 (158)
T smart00516       14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSNPDLSVLRKILKILQDH   93 (158)
T ss_pred             CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCcccccHHHHHHHHHHHHHH
Confidence            79999999999999999988999999999999999998876  5667899999999999999999999999999999999


Q ss_pred             hhccccceEEEeCChhHHHHHHHhccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCCCC
Q 045016          132 FPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLP  197 (204)
Q Consensus       132 yP~~l~~i~ivn~p~~~~~~~~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~~  197 (204)
                      ||++++++||||+|++++++|+++++|+++++++||+++++ ++.++|.+++|+++||.+|||+++
T Consensus        94 yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~-~~~~~L~~~i~~~~lP~~~GG~~~  158 (158)
T smart00516       94 YPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGN-DSKEELLEYIDPEQLPEELGGTLD  158 (158)
T ss_pred             hHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCC-CCHHHHHhhCCHhhCcHhhCCCCC
Confidence            99999999999999999999999999999999999999997 445899999999999999999974

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>cd00170 SEC14 Sec14p-like lipid-binding domain

Probab=99.97  E-value=1.6e-30  Score=184.42  Aligned_cols=146  Identities=40%  Similarity=0.663  Sum_probs=130.4

Q ss_pred             CcceeeCCCCCCCcEEEEecCCCCC-CCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCCc--cHHHHHHH
Q 045016           48 NILNMQGFDKKGRPILVAFASRHKP-SDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS--DIRAYLAC  124 (204)
Q Consensus        48 ~~~~~~g~d~~g~pV~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~~--~~~~~~~~  124 (204)
                      +..+..|.|++||||++++++..+. ...+.++++++.++.+|.+++.......|+++|+|++|.+++++  +.+.++++
T Consensus         9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~   88 (157)
T cd00170           9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKI   88 (157)
T ss_pred             cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHH
Confidence            3344555799999999999996443 33455889999999999998877666679999999999999998  78899999


Q ss_pred             HHHHhhchhccccceEEEeCChhHHHHHHHhccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCC
Q 045016          125 LSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGK  195 (204)
Q Consensus       125 ~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~  195 (204)
                      ++.++++||++++++||||+|++++++|+++++++++++++||+++++.  .++|.+++++++||.+|||+
T Consensus        89 ~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~--~~~L~~~i~~~~Lp~~~GG~  157 (157)
T cd00170          89 LKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD--KEELLKYIDKEQLPEEYGGT  157 (157)
T ss_pred             HHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC--HHHHHhhCChhhCcHhhCCC
Confidence            9999999999999999999999999999999999999999999999874  58999999999999999996

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A

Probab=99.78  E-value=2.9e-19  Score=125.92  Aligned_cols=141  Identities=30%  Similarity=0.475  Sum_probs=95.7

Q ss_pred             cceeeCCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCCc-cHHHHHHHHHH
Q 045016           49 ILNMQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS-DIRAYLACLSI  127 (204)
Q Consensus        49 ~~~~~g~d~~g~pV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~~-~~~~~~~~~~~  127 (204)
                      +++..|+|++|+||+++..... ++..+.+.++.+++..+   ...  -...++++|+|+++.+..+- +...++++.+.
T Consensus         3 ~~~~gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~l---~~~--~~~~~f~vVid~~~~~~~~~~~~~~l~~~~~~   76 (149)
T PF13716_consen    3 FFYPGGRDREGRPVVVFIASRL-PSSDDLERLLLYLLSTL---SEE--VVDKPFSVVIDHTGFSRSSEPSLSWLKQLYKL   76 (149)
T ss_dssp             E-EEEEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHHH----TT--TTTS-EEEEEE-TT--GGG---HHHHHHTTTS
T ss_pred             EEEecccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHhh---hHH--hcCCCEEEEEEcCCCccccCCchHHHHHHHHH
Confidence            3456789999999999998877 44444444444444444   222  23467999999999888654 78999999999


Q ss_pred             HhhchhccccceEEEeCChhHHHHH-HHhccCCCccc-cceEEEEcCCcchHHHhhcCCCCCCccccCCCCCC
Q 045016          128 LQDCFPERLGKLYIVHAPKLFMTVW-KVVYPFIDDNT-KKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPL  198 (204)
Q Consensus       128 ~~~~yP~~l~~i~ivn~p~~~~~~~-~~~k~~l~~~~-~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~~~  198 (204)
                      +...|+.+++++||||++++++... .+.+++.+.+. .+||+.+.+   .++|.++|++++||+++||+.+.
T Consensus        77 l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s---l~~L~~~i~~~qL~~~lp~~~~~  146 (149)
T PF13716_consen   77 LPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS---LSELSKHIDPSQLPESLPGVLQY  146 (149)
T ss_dssp             S-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS---TCGGGGTSGGGG------HHH--
T ss_pred             HHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC---HHHHHhhCCHHHhcccCCCEEec
Confidence            9999999999999999999999999 56666678888 899999987   48999999999999999987653

>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=1.3e-08  Score=80.13  Aligned_cols=123  Identities=23%  Similarity=0.412  Sum_probs=103.6

Q ss_pred             CCCCCCcEEEEecCCCCCCC-CCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCCc-cHHHHHHHHHHHhhch
Q 045016           55 FDKKGRPILVAFASRHKPSD-GTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS-DIRAYLACLSILQDCF  132 (204)
Q Consensus        55 ~d~~g~pV~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~~-~~~~~~~~~~~~~~~y  132 (204)
                      +|++||+|+.+-..++.+.. .+-..+++++.+.+|..++.      .++.++-..|+...+- ...++.+...-+..+|
T Consensus        89 ~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve~------DYt~vYfh~gl~s~nkp~l~~l~~aYke~Dr~~  162 (467)
T KOG4406|consen   89 KDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVEN------DYTLVYFHHGLPSDNKPYLQLLFDAYKELDRNF  162 (467)
T ss_pred             ccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHhc------cceeeehhcCCcccccchHHHHHHHHHHHHHHH
Confidence            69999999999888876433 23334889999999998885      2888888899887776 4677778888888889


Q ss_pred             hccccceEEEeCChhHHHHHHHhccCCCccccceEEEEcCCcchHHHhhcCCCC
Q 045016          133 PERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKS  186 (204)
Q Consensus       133 P~~l~~i~ivn~p~~~~~~~~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~  186 (204)
                      -..++.+|+|++-|+..++|+++||+++.+..+||+.+..   .++|.+++.-+
T Consensus       163 ~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~---lseL~~~l~l~  213 (467)
T KOG4406|consen  163 KKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNS---LSELFEALKLN  213 (467)
T ss_pred             hhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeeh---HHHHHHhhhhh
Confidence            9999999999999999999999999999999999999976   58999887644

>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=98.26  E-value=7.3e-07  Score=51.53  Aligned_cols=23  Identities=57%  Similarity=0.775  Sum_probs=20.4

Q ss_pred             ChHHHHHhcCCCHHHHHHHHHHH
Q 045016            1 MIRRFLRARDLDIEKASAMLLKY   23 (204)
Q Consensus         1 ~LlrfL~~~~~~v~~a~~~l~~~   23 (204)
                      +|+|||||++|||++|.++|.++
T Consensus        33 ~llRFLRARkf~v~~A~~mL~~t   55 (55)
T PF03765_consen   33 FLLRFLRARKFDVEKAFKMLKKT   55 (55)
T ss_dssp             HHHHHHHHTTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHhC
Confidence            58999999999999999999875

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=85.91  E-value=1  Score=24.16  Aligned_cols=19  Identities=26%  Similarity=0.455  Sum_probs=15.2

Q ss_pred             HHHHHhcCCCHHHHHHHHH
Q 045016            3 RRFLRARDLDIEKASAMLL   21 (204)
Q Consensus         3 lrfL~~~~~~v~~a~~~l~   21 (204)
                      ..||.+++||++.|...+-
T Consensus        19 ~~~L~~~~wdle~Av~~y~   37 (43)
T PF14555_consen   19 IQYLEANNWDLEAAVNAYF   37 (43)
T ss_dssp             HHHHHHTTT-HHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHH
Confidence            4789999999999988753

>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised

Probab=85.55  E-value=4.1  Score=26.37  Aligned_cols=77  Identities=17%  Similarity=0.202  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeCC-CCCCCCccHHHHHHHHHHHhhchhccccceEEEeCChhHHHHH
Q 045016           74 DGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQ-GWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVW  152 (204)
Q Consensus        74 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iiD~~-g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~  152 (204)
                      ..+.+++.. +.-.++..+.    ....+.+++|++ +  +..+++.......+.... ....++++=+|-.+.+...+.
T Consensus        10 ~~t~ed~~~-~~~~~~~~~~----~~~~~~ll~d~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~r~AvV~~~~~~~~~~   81 (109)
T PF11964_consen   10 KLTEEDYKE-LLPALEELIA----DHGKIRLLVDLRRD--FEGWSPEARWEDAKFGLK-HLKHFRRIAVVGDSEWIRMIA   81 (109)
T ss_dssp             EE-HHHHHH-HHHHHHHHHT----TSSSEEEEEEEC-C--EEEEHHHHHHHHHHHHCC-CCGGEEEEEEE-SSCCCHHHH
T ss_pred             eeCHHHHHH-HHHHHHHHHh----cCCceEEEEEecCc--cCCCCHHHHHHHHHhchh-hhcccCEEEEEECcHHHHHHH
Confidence            345677766 5555555444    346789999988 6  344556666666655545 888889999999999999988


Q ss_pred             HHhccC
Q 045016          153 KVVYPF  158 (204)
Q Consensus       153 ~~~k~~  158 (204)
                      +++..+
T Consensus        82 ~~~~~~   87 (109)
T PF11964_consen   82 NFFAAF   87 (109)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            888886

This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=81.16  E-value=5.2  Score=29.94  Aligned_cols=98  Identities=13%  Similarity=0.173  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhC------CCCCceEEEEEeCCCCCCCCc----cHHHHHHHHHHHhhchhccccceEEEeCChhH----
Q 045016           83 FVVYCLDKICAKM------PKGHEKFVYIGDLQGWGYSCS----DIRAYLACLSILQDCFPERLGKLYIVHAPKLF----  148 (204)
Q Consensus        83 ~~~~~~e~~~~~~------~~~~~~~~~iiD~~g~~~~~~----~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~----  148 (204)
                      .++|++|+.+...      .+..++-.+|+||-|    ++    -...++++++-++. .--++..+|++.++.+.    
T Consensus        74 gLv~cmEyl~~NldwL~~~~Gd~eddylifDcPG----QIELytH~pVm~~iv~hl~~-~~F~~c~Vylldsqf~vD~~K  148 (273)
T KOG1534|consen   74 GLVYCMEYLLENLDWLEEEIGDVEDDYLIFDCPG----QIELYTHLPVMPQIVEHLKQ-WNFNVCVVYLLDSQFLVDSTK  148 (273)
T ss_pred             cchhHHHHHHHHHHHHHhhccCccCCEEEEeCCC----eeEEeecChhHHHHHHHHhc-ccCceeEEEEeccchhhhHHH
Confidence            4577888766543      244577899999988    43    25677777777766 44566778877776543    


Q ss_pred             --HHHH----HHhccCCCc-cccceEEEEcCCcchHHHhhcCCCC
Q 045016          149 --MTVW----KVVYPFIDD-NTKKKIVFVENKNLTSTLLDEIDKS  186 (204)
Q Consensus       149 --~~~~----~~~k~~l~~-~~~~ki~~~~~~~~~~~L~~~i~~~  186 (204)
                        +...    .++.--+|. .+..|.-++++ ..+++|.++++++
T Consensus       149 fiSG~lsAlsAMi~lE~P~INvlsKMDLlk~-~~k~~l~~Fl~~d  192 (273)
T KOG1534|consen  149 FISGCLSALSAMISLEVPHINVLSKMDLLKD-KNKKELERFLNPD  192 (273)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhhHHHHhhh-hhHHHHHHhcCCc
Confidence              3333    333322332 13344444443 2256788888776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
1olm_A	403	Supernatant Protein Factor In Complex With Rrr-Alph		1e-15
1olm_E	403	Supernatant Protein Factor In Complex With Rrr-Alph		2e-15
3q8g_A	320	Resurrection Of A Functional Phosphatidylinositol T		2e-14
3b74_A	320	Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co		3e-14
1aua_A	296	Phosphatidylinositol Transfer Protein Sec14p From S		2e-13
1o6u_A	403	The Crystal Structure Of Human Supernatant Protein		3e-13
4fmm_A	360	Dimeric Sec14 Family Homolog 3 From Saccharomyces C		1e-12
3hy5_A	316	Crystal Structure Of Cralbp Length = 316		1e-11
1oip_A	278	The Molecular Basis Of Vitamin E Retention: Structu		1e-10
1r5l_A	262	Crystal Structure Of Human Alpha-tocopherol Transfe		3e-10
3hx3_A	316	Crystal Structure Of Cralbp Mutant R234w Length = 3		7e-10

>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 23/211 (10%)
Query: 4   RFLRARDLDIEKASAMLLKYLSWRRDFVPNGLIS---ESEIQNHLAKNILNMQGFDKKGR 60
           R+LRAR  D++K+ AML K++ +R+    + +IS      IQ +L+     M G+D  G 
Sbjct: 40  RWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGG---MCGYDLDGC 96
Query: 61  PI------------LVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDL 108
           P+            L+  AS+       + + +  +  C  +   K+ +  E    I D 
Sbjct: 97  PVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQT-TKLGRKVETITIIYDC 155
Query: 109 QGWGYSC---SDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKK 165
           +G G        + AY   L + ++ +PE L +L++V APKLF   + ++ PF+ ++T+K
Sbjct: 156 EGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRK 215
Query: 166 KIVFVENKNLTSTLLDEIDKSQLPDIYGGKL 196
           KI+ V   N    LL  I   Q+P  YGG +
Sbjct: 216 KIM-VLGANWKEVLLKHISPDQVPVEYGGTM 245

>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 23/211 (10%)
Query: 4   RFLRARDLDIEKASAMLLKYLSWRRDFVPNGLIS---ESEIQNHLAKNILNMQGFDKKGR 60
           R+LRAR  D++K+ AML K++ +R+    + +IS      IQ +L+     M G+D  G 
Sbjct: 40  RWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGG---MCGYDLDGC 96
Query: 61  PI------------LVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDL 108
           P+            L+  AS+       + + +  +  C  +   K+ +  E    I D 
Sbjct: 97  PVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQT-TKLGRKVETITIIYDC 155
Query: 109 QGWGYSC---SDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKK 165
           +G G        + AY   L + ++ +PE L +L++V APKLF   + ++ PF+ ++T+K
Sbjct: 156 EGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRK 215
Query: 166 KIVFVENKNLTSTLLDEIDKSQLPDIYGGKL 196
           KI+ V   N    LL  I   Q+P  YGG +
Sbjct: 216 KIM-VLGANWKEVLLKHISPDQVPVEYGGTM 245

>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 24/214 (11%)
Query: 4   RFLRARDLDIEKASAMLLKYLSWRRDFVPNGLIS------ESEIQNHLAKNILNMQGF-- 55
           RFLRAR  DI  +  M ++   WR ++  N +I       E+E +  +    +  Q +  
Sbjct: 66  RFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHH 125
Query: 56  -DKKGRPILVA------------FASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKF 102
            DK GRP+  A              +  +     +++++ F  Y +     +     E  
Sbjct: 126 VDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETS 185
Query: 103 VYIGDLQGWGYSCS-DIRAYLACLS-ILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFID 160
             + DL+G   S +  + +Y+  ++ I Q+ +PER+GK YI+H+P  F T++K+V PF+D
Sbjct: 186 CTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLD 245
Query: 161 DNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGG 194
             T  KI F+   +    LL +I    LP  YGG
Sbjct: 246 PVTVSKI-FILGSSYKKELLKQIPIENLPVKYGG 278

>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 24/214 (11%)
Query: 4   RFLRARDLDIEKASAMLLKYLSWRRDFVPNGLIS------ESEIQNHLAKNILNMQGF-- 55
           RFLRAR  DI  +  M ++   WR ++  N +I       E+E +  +    +  Q +  
Sbjct: 66  RFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHH 125
Query: 56  -DKKGRPI------------LVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKF 102
            DK GRP+            +    +  +     +++++ F  Y +     +     E  
Sbjct: 126 VDKDGRPLYFEELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETS 185
Query: 103 VYIGDLQGWGYSCS-DIRAYLACLS-ILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFID 160
             + DL+G   S +  + +Y+  ++ I Q+ +PER+GK YI+H+P  F T++K+V PF+D
Sbjct: 186 CTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLD 245
Query: 161 DNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGG 194
             T  KI F+   +    LL +I    LP  YGG
Sbjct: 246 PVTVSKI-FILGSSYKKELLKQIPIENLPVKYGG 278

>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 22/211 (10%)
Query: 4   RFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGF---DKKGR 60
           RFLRAR  D++ A  M      WR+D+  + ++ +              Q +   DK GR
Sbjct: 57  RFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGR 116
Query: 61  PIL---VAFASRHKPSDGTLED---------FKRFVVYCLDKICAKMPKGH--EKFVYIG 106
           P+    +   + H+ +  T E+         ++  V Y L   C++   GH  E    I 
Sbjct: 117 PVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRL-PACSRA-AGHLVETSCTIM 174
Query: 107 DLQGWGYSCS-DIRAYLACLS-ILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTK 164
           DL+G   S +  + +Y+   S I Q+ +PER+GK YI++AP  F T +++  PF+D  T 
Sbjct: 175 DLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTV 234
Query: 165 KKIVFVENKNLTSTLLDEIDKSQLPDIYGGK 195
            KI F+   +    LL +I    LP  +GGK
Sbjct: 235 SKI-FILGSSYQKELLKQIPAENLPVKFGGK 264

>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 23/209 (11%)
Query: 4   RFLRARDLDIEKASAMLLKYLSWRRDFVPNGLIS---ESEIQNHLAKNILNMQGFDKKGR 60
           R+LRAR  D++K+ A L K++ +R+    + +IS      IQ +L+       G+D  G 
Sbjct: 40  RWLRARSFDLQKSEAXLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGXC---GYDLDGC 96
Query: 61  PI------------LVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDL 108
           P+            L+  AS+         + +  +  C  +   K+ +  E    I D 
Sbjct: 97  PVWYDIIGPLDAKGLLFSASKQDLLRTKXRECELLLQECAHQT-TKLGRKVETITIIYDC 155
Query: 109 QGWGYSC---SDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKK 165
           +G G        + AY   L   ++ +PE L +L++V APKLF   + ++ PF+ ++T+K
Sbjct: 156 EGLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRK 215
Query: 166 KIVFVENKNLTSTLLDEIDKSQLPDIYGG 194
           KI  V   N    LL  I   Q+P  YGG
Sbjct: 216 KIX-VLGANWKEVLLKHISPDQVPVEYGG 243

>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces Cerevisiae Presents Some Novel Features Of Structure That Lead To A Surprising "dimer- Monomer" State Change Induced By Substrate Binding Length = 360

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 27/210 (12%)
Query: 4   RFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISES---------EIQNHLAKNILNMQG 54
           R+LRA    ++     +   L+WRR+F  + L  E           ++N   K ++   G
Sbjct: 92  RYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVI--LG 149
Query: 55  FDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGW--- 111
           ++   RPIL     R   +  T     + +V+ L+++   MP G +    + D + +   
Sbjct: 150 YENDARPILYLKPGRQ--NTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDV 207
Query: 112 -----GYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKK 166
                      I      L ILQ  +PERLGK  + + P L  T  K+++PFID  T++K
Sbjct: 208 PKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREK 267
Query: 167 IVFVENKNLTSTLLDEIDKSQLPDIYGGKL 196
           +VF E        +  + K++L  +YGG L
Sbjct: 268 LVFDE------PFVKYVPKNELDSLYGGDL 291

>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp Length = 316

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 13/202 (6%)
Query: 4   RFLRARDLDIEKASAMLLKYLSWRRDF--VPNGLISESEIQNHLAKNILNMQGFDKKGRP 61
           RF+RAR  ++ +A  +L  Y+++R  +  + + L  E+      A     +   DK GR 
Sbjct: 97  RFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRV 156
Query: 62  ILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGW------GYSC 115
           +++      +  + T ++  +   + L+K+          F  I + +G+          
Sbjct: 157 VMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRT 216
Query: 116 SDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNL 175
           SD+R     + +LQD FP R   ++ +H P  F T + VV PF+     ++ VFV   +L
Sbjct: 217 SDLRK---MVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER-VFVHGDDL 272
Query: 176 TSTLLDEIDKSQLPDIYGGKLP 197
            S    EID++ LP  +GG LP
Sbjct: 273 -SGFYQEIDENILPSDFGGTLP 293

>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 17/202 (8%)
Query: 4   RFLRARDLDIEKASAMLLKYLSWRR-------DFVPNGLISESEIQNHLAKNILNMQGFD 56
           RFLRARD D++ A  +L  Y  WR        D  P  +I   +   H       ++  D
Sbjct: 54  RFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGV-----LRSRD 108
Query: 57  KKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS 116
             G  +L+   +   P   T  D  R  +   + I  ++         I DL+GW +S +
Sbjct: 109 PTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHA 168
Query: 117 -DIRAYLA--CLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENK 173
             I   +A    ++L D FP ++  +++++ P +F  V+ ++ PF+ +  K++I  +   
Sbjct: 169 FQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI-HMHGN 227
Query: 174 NLTSTLLDEIDKSQLPDIYGGK 195
           N   +LL       LP  YGG+
Sbjct: 228 NYKQSLLQHF-PDILPLEYGGE 248

>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Query: 4   RFLRARDLDIEKASAMLLKYLSWRR-------DFVPNGLISESEIQNHLAKNILNMQGFD 56
           RFLRARD D++ A  +L  Y  WR        D  P  +I   +   H       ++  D
Sbjct: 38  RFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGV-----LRSRD 92
Query: 57  KKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS 116
             G  +L+   +   P   T  D  R  +   + I  ++         I DL+GW +S +
Sbjct: 93  PTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHA 152
Query: 117 -DIRAYLA--CLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENK 173
             I   +A    ++L D FP ++  +++++ P +F  V+  + PF+ +  K++I      
Sbjct: 153 FQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIKPFLTEKIKERI-HXHGN 211
Query: 174 NLTSTLLDEIDKSQLPDIYGGK 195
           N   +LL       LP  YGG+
Sbjct: 212 NYKQSLLQHF-PDILPLEYGGE 232

>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w Length = 316

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 13/202 (6%)
Query: 4   RFLRARDLDIEKASAMLLKYLSWRRDF--VPNGLISESEIQNHLAKNILNMQGFDKKGRP 61
           RF+RAR  ++ +A  +L  Y+++R  +  + + L  E+      A     +   DK GR 
Sbjct: 97  RFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRV 156
Query: 62  ILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYS------C 115
           + +      +  + T ++  +   + L+K+          F  I + +G+          
Sbjct: 157 VXLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTXQQAASLRT 216
Query: 116 SDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNL 175
           SD+R     +  LQD FP     ++ +H P  F T + VV PF+     ++ VFV   +L
Sbjct: 217 SDLRK---XVDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER-VFVHGDDL 272
Query: 176 TSTLLDEIDKSQLPDIYGGKLP 197
            S    EID++ LP  +GG LP
Sbjct: 273 -SGFYQEIDENILPSDFGGTLP 293

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	2e-60
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	3e-59
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	3e-55
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	4e-49
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	6e-48
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	7e-12
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320

 Score =  190 bits (484), Expect = 2e-60
 Identities = 57/220 (25%), Positives = 86/220 (39%), Gaps = 24/220 (10%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILN--------- 51
            + RFLRAR  DI  +  M ++   WR ++  N +I + E                    
Sbjct: 63  TLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQY 122

Query: 52  MQGFDKKGRPILVAFASRHKPSD----GTLEDFKRFVVYCLDKIC--------AKMPKGH 99
               DK GRP+  A              T +   R +V   +            +     
Sbjct: 123 YHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLI 182

Query: 100 EKFVYIGDLQGWGYSCSD--IRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYP 157
           E    + DL+G   S +   +        I Q+ +PER+GK YI+H+P  F T++K+V P
Sbjct: 183 ETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKP 242

Query: 158 FIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLP 197
           F+D  T  KI  + +      LL +I    LP  YGG   
Sbjct: 243 FLDPVTVSKIFILGSSY-KKELLKQIPIENLPVKYGGTSV 281

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296

 Score =  186 bits (474), Expect = 3e-59
 Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 18/213 (8%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQ---GFDK 57
            + RFLRAR  D++ A  M      WR+D+  + ++ +              Q     DK
Sbjct: 54  TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDK 113

Query: 58  KGRPILVAFASRHKPSD----GTLEDFKRFVVYCLDKICAKMPKGH--------EKFVYI 105
            GRP+           +     + E   + +V+  + +                E    I
Sbjct: 114 DGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTI 173

Query: 106 GDLQGWGYSCSD--IRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNT 163
            DL+G   S +   +        I Q+ +PER+GK YI++AP  F T +++  PF+D  T
Sbjct: 174 MDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVT 233

Query: 164 KKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKL 196
             KI  + +      LL +I    LP  +GGK 
Sbjct: 234 VSKIFILGSSY-QKELLKQIPAENLPVKFGGKS 265

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316

 Score =  177 bits (450), Expect = 3e-55
 Identities = 44/203 (21%), Positives = 86/203 (42%), Gaps = 9/203 (4%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGL--ISESEIQNHLAKNILN-MQGFDK 57
              RF+RAR  ++ +A  +L  Y+++R  + P     +S   ++  +       +   DK
Sbjct: 94  FFLRFIRARKFNVGRAYELLRGYVNFRLQY-PELFDSLSPEAVRCTIEAGYPGVLSSRDK 152

Query: 58  KGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYS--- 114
            GR +++      +  + T ++  +   + L+K+          F  I + +G+      
Sbjct: 153 YGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAA 212

Query: 115 CSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKN 174
                     + +LQD FP     ++ +H P  F T + VV PF+     +++    +  
Sbjct: 213 SLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDD- 271

Query: 175 LTSTLLDEIDKSQLPDIYGGKLP 197
             S    EID++ LP  +GG LP
Sbjct: 272 -LSGFYQEIDENILPSDFGGTLP 293

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403

 Score =  163 bits (414), Expect = 4e-49
 Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 17/212 (8%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILN-MQGFDKKG 59
            + R+LRAR  D++K+ AML K++ +R+    + +IS    +  + + +   M G+D  G
Sbjct: 37  FLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPE-VIQQYLSGGMCGYDLDG 95

Query: 60  RPILVAFASRHKP----SDGTLEDFKRFVVYCLDKI-------CAKMPKGHEKFVYIGDL 108
            P+                 + +D  R  +   + +         K+ +  E    I D 
Sbjct: 96  CPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDC 155

Query: 109 QGWGYSCSD---IRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKK 165
           +G G        + AY   L + ++ +PE L +L++V APKLF   + ++ PF+ ++T+K
Sbjct: 156 EGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRK 215

Query: 166 KIVFVENKNLTSTLLDEIDKSQLPDIYGGKLP 197
           KI+ +        LL  I   Q+P  YGG + 
Sbjct: 216 KIMVLGANWK-EVLLKHISPDQVPVEYGGTMT 246

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262

 Score =  156 bits (397), Expect = 6e-48
 Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 9/203 (4%)

Query: 1   MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPN--GLISESEIQNHLAKNILN-MQGFDK 57
            + RFLRARD D++ A  +L  Y  WR +  P     +    I   L       ++  D 
Sbjct: 35  FLLRFLRARDFDLDLAWRLLKNYYKWRAEC-PEISADLHPRSIIGLLKAGYHGVLRSRDP 93

Query: 58  KGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYS--- 114
            G  +L+   +   P   T  D  R  +   + I  ++         I DL+GW +S   
Sbjct: 94  TGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAF 153

Query: 115 CSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKN 174
                      ++L D FP ++  +++++ P +F  V+ ++ PF+ +  K++I    N  
Sbjct: 154 QITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNN- 212

Query: 175 LTSTLLDEIDKSQLPDIYGGKLP 197
                L +     LP  YGG+  
Sbjct: 213 -YKQSLLQHFPDILPLEYGGEEF 234

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Length = 256

 Score = 61.5 bits (149), Expect = 7e-12
 Identities = 25/145 (17%), Positives = 44/145 (30%), Gaps = 11/145 (7%)

Query: 46  AKNILNMQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYI 105
             +I    G  K G PI    A R K      +     V+  L           + +  +
Sbjct: 9   TLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIV 62

Query: 106 GDLQGWGYSCSDIRAYLA-CLSILQDCFPERLGKLYIVHAPKLFMTVWKVVY-PFIDDNT 163
            DL   G S      +L+    +      + +  +YI +         K           
Sbjct: 63  VDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKG 122

Query: 164 KKKIVFVENKNLTSTLLDEIDKSQL 188
            K++VF++       L + I+  Q 
Sbjct: 123 SKRLVFIDC---PGKLAEHIEHEQQ 144

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 46/195 (23%)

Query: 9   RDLDI-EKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNILNMQGFD-----KKGRPI 62
           R   + +  SA    ++S   D     L +  E+++ L K  L+ +  D         P 
Sbjct: 273 RFKQVTDFLSAATTTHIS--LDHHSMTL-TPDEVKSLLLK-YLDCRPQDLPREVLTTNPR 328

Query: 63  LVA-FASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRAY 121
            ++  A   +    T +++K       DK+   +    E    +  L+      ++ R  
Sbjct: 329 RLSIIAESIRDGLATWDNWKH---VNCDKLTTII----ESS--LNVLEP-----AEYRKM 374

Query: 122 LACLSILQDCFPERLGKLYIVHAP-KLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLL 180
              LS+    FP         H P  L   +W        D  K  ++ V NK    +L+
Sbjct: 375 FDRLSV----FPPS------AHIPTILLSLIW-------FDVIKSDVMVVVNKLHKYSLV 417

Query: 181 DEIDKS---QLPDIY 192
           ++  K     +P IY
Sbjct: 418 EKQPKESTISIPSIY 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	100.0
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	100.0
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	100.0
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	100.0
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	100.0
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	99.63
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	99.47

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*

Probab=100.00  E-value=1e-47  Score=300.20  Aligned_cols=197  Identities=22%  Similarity=0.425  Sum_probs=177.1

Q ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccC-CCCCChhhHHHHHhhCcc-eeeCCCCCCCcEEEEecCCCCCCCCCHH
Q 045016            1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVP-NGLISESEIQNHLAKNIL-NMQGFDKKGRPILVAFASRHKPSDGTLE   78 (204)
Q Consensus         1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~-~~~~~~~~~~~~l~~~~~-~~~g~d~~g~pV~~~~~~~~~~~~~~~~   78 (204)
                      +|+|||||++||+++|.++|+++++||+++.. -..++++++...+..|.. +++|+|++||||++++++.+++...+.+
T Consensus        94 ~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~  173 (316)
T 3hx3_A           94 FFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFD  173 (316)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHH
Confidence            58999999999999999999999999999642 012566777777888875 5789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCCc---cHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHh
Q 045016           79 DFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS---DIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVV  155 (204)
Q Consensus        79 ~~~~~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~~---~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~  155 (204)
                      ++++++++++|.++...+.++.|+++|+|++|++++|+   +++.+++++.+++++||++++++||||+|+++.++|+++
T Consensus       174 ~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~iv  253 (316)
T 3hx3_A          174 EILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVV  253 (316)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHH
Confidence            99999999999887654456689999999999999874   788999999999999999999999999999999999999


Q ss_pred             ccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCCCCCc
Q 045016          156 YPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLV  199 (204)
Q Consensus       156 k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~~~~  199 (204)
                      ++|+++++++||+++++ + .++|.++||+++||++|||++++.
T Consensus       254 kpfl~~kt~~KI~~~~~-~-~~~L~~~I~~~~LP~eyGG~~~~~  295 (316)
T 3hx3_A          254 KPFLKSKLLERVFVHGD-D-LSGFYQEIDENILPSDFGGTLPKY  295 (316)
T ss_dssp             GGGCCHHHHTTEEEEET-C-CHHHHHHSCGGGSBGGGTSSBCCC
T ss_pred             HHhCCHHhhhheEEeCC-C-HHHHHhhCCHhhCcHhhCCCCCCc
Confidence            99999999999999975 3 379999999999999999999843

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*

Probab=100.00  E-value=7.1e-48  Score=294.72  Aligned_cols=196  Identities=25%  Similarity=0.419  Sum_probs=175.4

Q ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccC-CCCCChhhHHHHHhhCcc-eeeCCCCCCCcEEEEecCCCCCCCCCHH
Q 045016            1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVP-NGLISESEIQNHLAKNIL-NMQGFDKKGRPILVAFASRHKPSDGTLE   78 (204)
Q Consensus         1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~-~~~~~~~~~~~~l~~~~~-~~~g~d~~g~pV~~~~~~~~~~~~~~~~   78 (204)
                      +|+|||||++||+++|.++|+++++||+++.. ...+.++++.+.+..|.. +++|+|++||||++++++.+++...+.+
T Consensus        35 ~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~  114 (262)
T 1r5l_A           35 FLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAY  114 (262)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHH
Confidence            58999999999999999999999999999631 112456677777788764 6889999999999999999999889999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCCc---cHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHh
Q 045016           79 DFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS---DIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVV  155 (204)
Q Consensus        79 ~~~~~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~~---~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~  155 (204)
                      ++.++.++++|.++...+.+..|+++|+|++|++++|+   +++.++.++++++++||++++++||||+|++++++|+++
T Consensus       115 ~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~v  194 (262)
T 1r5l_A          115 DVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMI  194 (262)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHH
Confidence            99999999999877654445689999999999999986   578999999999999999999999999999999999999


Q ss_pred             ccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCCCCC
Q 045016          156 YPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPL  198 (204)
Q Consensus       156 k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~~~  198 (204)
                      +||++++|++||+++++ ++.++|.++|| ++||++|||+++.
T Consensus       195 kpfl~~~t~~Ki~~~~~-~~~~~L~~~i~-~~LP~~yGG~~~~  235 (262)
T 1r5l_A          195 KPFLTEKIKERIHMHGN-NYKQSLLQHFP-DILPLEYGGEEFS  235 (262)
T ss_dssp             GGGSCHHHHTTEEECCS-SCHHHHHHHST-TTSCGGGTCSSCC
T ss_pred             HHhcCHHHHhheEEeCC-CcHHHHHHHhh-hhCcHhhCCCCCC
Confidence            99999999999999975 66789999999 9999999999874

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1

Probab=100.00  E-value=2e-46  Score=291.21  Aligned_cols=200  Identities=27%  Similarity=0.412  Sum_probs=171.6

Q ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccCCCCCChhh--HHHHHhh-CcceeeCCCCCCCcEEEEecCCCCCCC---
Q 045016            1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESE--IQNHLAK-NILNMQGFDKKGRPILVAFASRHKPSD---   74 (204)
Q Consensus         1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~~~~~~~~~--~~~~l~~-~~~~~~g~d~~g~pV~~~~~~~~~~~~---   74 (204)
                      +|+|||||++||+++|.++|+++++||++++++......+  ..+.+.. ...+++|+|++||||++++++.+++..   
T Consensus        54 ~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~  133 (296)
T 1aua_A           54 TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNK  133 (296)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhc
Confidence            5899999999999999999999999999987755322111  1233333 334789999999999999999988543   


Q ss_pred             -CCHHHHHHHHHHHHHHHHHhC--------CCCCceEEEEEeCCCCCCCCcc--HHHHHHHHHHHhhchhccccceEEEe
Q 045016           75 -GTLEDFKRFVVYCLDKICAKM--------PKGHEKFVYIGDLQGWGYSCSD--IRAYLACLSILQDCFPERLGKLYIVH  143 (204)
Q Consensus        75 -~~~~~~~~~~~~~~e~~~~~~--------~~~~~~~~~iiD~~g~~~~~~~--~~~~~~~~~~~~~~yP~~l~~i~ivn  143 (204)
                       .+.+++++++++.+|.+++..        ..+++++++|+|++|++++|++  .+.++.++++++++||+|++++||||
T Consensus       134 ~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN  213 (296)
T 1aua_A          134 VTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIIN  213 (296)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEES
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEEC
Confidence             588999999999999876532        2347899999999999999986  67889999999999999999999999


Q ss_pred             CChhHHHHHHHhccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCCCCCccC
Q 045016          144 APKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLVPI  201 (204)
Q Consensus       144 ~p~~~~~~~~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~~~~~~  201 (204)
                      +|++++++|+++|+||+++|++||+++++ ++.++|.++|++++||++|||++++...
T Consensus       214 ~P~~f~~~~~iikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~~LP~~yGG~~~~~~~  270 (296)
T 1aua_A          214 APFGFSTAFRLFKPFLDPVTVSKIFILGS-SYQKELLKQIPAENLPVKFGGKSEVDES  270 (296)
T ss_dssp             CCHHHHHHHHHHGGGSCHHHHTTEEECCS-CCHHHHTTTSCSSSSBGGGTSCBCCCGG
T ss_pred             chHHHHHHHHHHHhhcCHhhcceEEEeCc-ccHHHHHhhCCHhhCcHHhCCCCCCCCC
Confidence            99999999999999999999999999986 5678999999999999999999987653

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*

Probab=100.00  E-value=1.6e-46  Score=293.50  Aligned_cols=201  Identities=29%  Similarity=0.409  Sum_probs=171.9

Q ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccCCCCCChhhH--------HHHH-hhCcceeeCCCCCCCcEEEEecCCCC
Q 045016            1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEI--------QNHL-AKNILNMQGFDKKGRPILVAFASRHK   71 (204)
Q Consensus         1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~~~~~~~~~~--------~~~l-~~~~~~~~g~d~~g~pV~~~~~~~~~   71 (204)
                      +|+|||||++|||++|.++|+++++||+++++|......+.        .+.+ +.+..+++|+|++||||++++++.++
T Consensus        63 ~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d  142 (320)
T 3q8g_A           63 TLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGIN  142 (320)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccC
Confidence            58999999999999999999999999999887654322111        1222 33556889999999999999999998


Q ss_pred             CCC----CCHHHHHHHHHHHHHHHHHhC--------CCCCceEEEEEeCCCCCCCCcc--HHHHHHHHHHHhhchhcccc
Q 045016           72 PSD----GTLEDFKRFVVYCLDKICAKM--------PKGHEKFVYIGDLQGWGYSCSD--IRAYLACLSILQDCFPERLG  137 (204)
Q Consensus        72 ~~~----~~~~~~~~~~~~~~e~~~~~~--------~~~~~~~~~iiD~~g~~~~~~~--~~~~~~~~~~~~~~yP~~l~  137 (204)
                      +..    .+.+++++++++.+|.+++..        ...++++++|+|++|++++++.  .+.++.++.+++++||+|++
T Consensus       143 ~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~  222 (320)
T 3q8g_A          143 LKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMG  222 (320)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEE
T ss_pred             HHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhc
Confidence            754    478899999999999876421        2245789999999999999875  67889999999999999999


Q ss_pred             ceEEEeCChhHHHHHHHhccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCCCCCccCC
Q 045016          138 KLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLVPIQ  202 (204)
Q Consensus       138 ~i~ivn~p~~~~~~~~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~~~~~~~  202 (204)
                      ++||||+|++++++|+++++||++++++||+++++ ++.++|.++|++++||++|||++++.+.+
T Consensus       223 ~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~~LP~~yGG~~~~~~~~  286 (320)
T 3q8g_A          223 KFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGS-SYKKELLKQIPIENLPVKYGGTSVLHNPN  286 (320)
T ss_dssp             EEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCT-THHHHHHHHSCGGGSBGGGTSCBCCSSTT
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCC-CcHHHHHhhCChhhCChhhCCCCCCCCCC
Confidence            99999999999999999999999999999999985 56689999999999999999999986543

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=100.00  E-value=2.1e-45  Score=296.47  Aligned_cols=197  Identities=27%  Similarity=0.473  Sum_probs=171.1

Q ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccCCCCCChhhHHHHHhh-CcceeeCCCCCCCcEEEEecCCCCCC----CC
Q 045016            1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAK-NILNMQGFDKKGRPILVAFASRHKPS----DG   75 (204)
Q Consensus         1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~~~~~~~~~~~~~l~~-~~~~~~g~d~~g~pV~~~~~~~~~~~----~~   75 (204)
                      +|+|||||++||+++|.++|+++++||++++++.... ....+.+.. ...+++|+|++||||++++++.+++.    ..
T Consensus        37 ~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~  115 (403)
T 1olm_A           37 FLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSA  115 (403)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTS
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccC
Confidence            5899999999999999999999999999987765322 111112221 23457899999999999999999875    47


Q ss_pred             CHHHHHHHHHHHHHHHHHhCC-------CCCceEEEEEeCCCCCCCCc---cHHHHHHHHHHHhhchhccccceEEEeCC
Q 045016           76 TLEDFKRFVVYCLDKICAKMP-------KGHEKFVYIGDLQGWGYSCS---DIRAYLACLSILQDCFPERLGKLYIVHAP  145 (204)
Q Consensus        76 ~~~~~~~~~~~~~e~~~~~~~-------~~~~~~~~iiD~~g~~~~~~---~~~~~~~~~~~~~~~yP~~l~~i~ivn~p  145 (204)
                      +.+++++++++++|.+++.+.       .+..|+++|+|++|++++++   .++.++.++++++++||+|++++||||+|
T Consensus       116 ~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P  195 (403)
T 1olm_A          116 SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAP  195 (403)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCC
Confidence            899999999999999888653       24689999999999999997   46788999999999999999999999999


Q ss_pred             hhHHHHHHHhccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCCCCCc
Q 045016          146 KLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLV  199 (204)
Q Consensus       146 ~~~~~~~~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~~~~  199 (204)
                      +++.++|+++||||++++++||+++++ ++.++|.++|++++||++|||++++.
T Consensus       196 ~~f~~i~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~I~~~~LP~~yGG~~~~~  248 (403)
T 1olm_A          196 KLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEYGGTMTDP  248 (403)
T ss_dssp             TTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBGGGTSSBCCT
T ss_pred             HHHHHHHHHHHhhcCHhhhceEEEECh-hHHHHHHhhcChhhCchhhCCCcCCC
Confidence            999999999999999999999999986 66789999999999999999999864

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*

Probab=99.63  E-value=4.1e-16  Score=117.57  Aligned_cols=137  Identities=18%  Similarity=0.187  Sum_probs=113.3

Q ss_pred             HHHhhCcceeeCCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCCc-cHHHH
Q 045016           43 NHLAKNILNMQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS-DIRAY  121 (204)
Q Consensus        43 ~~l~~~~~~~~g~d~~g~pV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~~-~~~~~  121 (204)
                      +.-+.+.+|..|.|++|+||+++..++++.+..+.+.++.+++..++..+      ...+++|+|++|.+..+. +.+++
T Consensus         6 ~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~------~~~y~lV~d~T~~~~~n~p~~~wl   79 (256)
T 3pg7_A            6 ALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSNRFKTDFL   79 (256)
T ss_dssp             THHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGGCCCHHHH
T ss_pred             HHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCCCCcccCCcHHHH
Confidence            33456788888999999999999999999888888877777766666433      267999999999988765 68899


Q ss_pred             HHHHHHHhhchhccccceEEEeCChhHHHHHHH-hccCCCccccceEEEEcCCcchHHHhhcCCCCCC
Q 045016          122 LACLSILQDCFPERLGKLYIVHAPKLFMTVWKV-VYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQL  188 (204)
Q Consensus       122 ~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~-~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~l  188 (204)
                      +.+.+++...|...++++||+|++++++..++. .+++.+.+..+|++++++.   ++|.++|+.++|
T Consensus        80 ~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl---~eL~~~i~~~~L  144 (256)
T 3pg7_A           80 SKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP---GKLAEHIEHEQQ  144 (256)
T ss_dssp             HHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESST---TGGGGTSCGGGC
T ss_pred             HHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCH---HHHHhhcCHHHc
Confidence            999999999999999999999999999876655 4555666788899999874   899999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1r5la2	185	c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot	3e-31
d1olma3	199	c.13.1.1 (A:76-274) Supernatant protein factor (SP	4e-30
d1auaa2	203	c.13.1.1 (A:97-299) C-terminal domain of phosphati	7e-28
d1auaa1	93	a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl	6e-09
d1olma1	75	a.5.3.1 (A:1-75) Supernatant protein factor (SPF),	3e-08
d1r5la1	66	a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei	6e-06

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 3e-31
 Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 5/149 (3%)

Query: 52  MQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGW 111
           ++  D  G  +L+   +   P   T  D  R  +   + I  ++         I DL+GW
Sbjct: 14  LRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGW 73

Query: 112 GYS---CSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIV 168
            +S              ++L D FP ++  +++++ P +F  V+ ++ PF+ +  K++I 
Sbjct: 74  QFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIH 133

Query: 169 FVENKNLTSTLLDEIDKSQLPDIYGGKLP 197
                N     L +     LP  YGG+  
Sbjct: 134 MH--GNNYKQSLLQHFPDILPLEYGGEEF 160

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 4e-30
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 15/160 (9%)

Query: 52  MQGFDKKGRPILVAFASRHKPSD----GTLEDFKRFVVY-------CLDKICAKMPKGHE 100
           M G+D  G P+                 + +D  R  +               K+ +  E
Sbjct: 13  MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVE 72

Query: 101 KFVYIGDLQGWGYSCSD---IRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYP 157
               I D +G G        + AY   L + ++ +PE L +L++V APKLF   + ++ P
Sbjct: 73  TITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKP 132

Query: 158 FIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLP 197
           F+ ++T+KKI+ +        LL  I   Q+P  YGG + 
Sbjct: 133 FLSEDTRKKIMVLGANW-KEVLLKHISPDQVPVEYGGTMT 171

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (254), Expect = 7e-28
 Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 15/159 (9%)

Query: 52  MQGFDKKGRPILVAFASRHKPSD----GTLEDFKRFVVYCLDKI--------CAKMPKGH 99
               DK GRP+           +     + E   + +V+  + +                
Sbjct: 15  YHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLV 74

Query: 100 EKFVYIGDLQGWGYSC-SDIRAYLA-CLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYP 157
           E    I DL+G   S    + +Y+     I Q+ +PER+GK YI++AP  F T +++  P
Sbjct: 75  ETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKP 134

Query: 158 FIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKL 196
           F+D  T  KI  + +      LL +I    LP  +GGK 
Sbjct: 135 FLDPVTVSKIFILGSSYQ-KELLKQIPAENLPVKFGGKS 172

>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: N-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (118), Expect = 6e-09
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 1  MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISE 38
           + RFLRAR  D++ A  M      WR+D+  + ++ +
Sbjct: 54 TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQD 91

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 3e-08
 Identities = 13/36 (36%), Positives = 24/36 (66%)

Query: 1  MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLI 36
           + R+LRAR  D++K+ AML K++ +R+    + +I
Sbjct: 37 FLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNII 72

>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 6e-06
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 1  MIRRFLRARDLDIEKASAMLLKYLSWRRDF 30
           + RFLRARD D++ A  +L  Y  WR + 
Sbjct: 27 FLLRFLRARDFDLDLAWRLLKNYYKWRAEC 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1r5la2	185	Alpha-tocopherol transfer protein {Human (Homo sap	100.0
d1olma3	199	Supernatant protein factor (SPF), middle domain {H	100.0
d1auaa2	203	C-terminal domain of phosphatidylinositol transfer	100.0
d1olma1	75	Supernatant protein factor (SPF), N-terminal domai	99.11
d1auaa1	93	N-terminal domain of phosphatidylinositol transfer	98.91
d1r5la1	66	Alpha-tocopherol transfer protein {Human (Homo sap	98.8
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	86.44
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	81.59

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-37  Score=223.64  Aligned_cols=156  Identities=22%  Similarity=0.317  Sum_probs=140.5

Q ss_pred             HHHHHhhCcce-eeCCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCC---c
Q 045016           41 IQNHLAKNILN-MQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSC---S  116 (204)
Q Consensus        41 ~~~~l~~~~~~-~~g~d~~g~pV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~---~  116 (204)
                      +...++.|... ++|+|++||||+++++++++++..+.+++++++++.+|.+++..+.+.+|+++|+|++|+++++   .
T Consensus         2 i~~~l~~g~~~~lp~rD~~Gr~v~~~r~~~~d~~~~~~~~~~r~~~~~~e~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~   81 (185)
T d1r5la2           2 IIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQI   81 (185)
T ss_dssp             THHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHC
T ss_pred             hHHHHHcCCceecCCCCcCcCEEEEEEcccCCCCCCCHHHHHHHHHHHHHHHHhccccCCceEEEEEECCCCCHHHhhhc
Confidence            34667887765 7899999999999999999999999999999999999987765455668999999999999987   4


Q ss_pred             cHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCCC
Q 045016          117 DIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKL  196 (204)
Q Consensus       117 ~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~  196 (204)
                      +++.+++++++++++||+|++++||||+|++++++|+++|+||++++++||++++++  .+++.+++++++||++|||++
T Consensus        82 ~~~~~~~~~~~~q~~yP~rl~~i~ivn~P~~~~~~~~~vk~fl~~k~~~Ki~~~~~~--~~~~~~~~~~~~LP~~~GG~~  159 (185)
T d1r5la2          82 TPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNN--YKQSLLQHFPDILPLEYGGEE  159 (185)
T ss_dssp             CHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSS--CHHHHHHHSTTTSCGGGTCSS
T ss_pred             cHHHHHHHHHHHHhhCchhhheeEEEcCCHHHHHHHHHHHHhccHHHHhheEEeccc--hHHHHhhcCHHhCCHhcCCCC
Confidence            789999999999999999999999999999999999999999999999999999753  367777788999999999998


Q ss_pred             CC
Q 045016          197 PL  198 (204)
Q Consensus       197 ~~  198 (204)
                      +.
T Consensus       160 ~~  161 (185)
T d1r5la2         160 FS  161 (185)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-37  Score=223.21  Aligned_cols=151  Identities=26%  Similarity=0.463  Sum_probs=136.0

Q ss_pred             ceeeCCCCCCCcEEEEecCCCCCC----CCCHHHHHHHHHHHHHHHHHhC-------CCCCceEEEEEeCCCCCCCCc--
Q 045016           50 LNMQGFDKKGRPILVAFASRHKPS----DGTLEDFKRFVVYCLDKICAKM-------PKGHEKFVYIGDLQGWGYSCS--  116 (204)
Q Consensus        50 ~~~~g~d~~g~pV~~~~~~~~~~~----~~~~~~~~~~~~~~~e~~~~~~-------~~~~~~~~~iiD~~g~~~~~~--  116 (204)
                      ..++|+|++||||++++++++++.    ..+.++++++.++.+|.+++.+       ..+++++++|+|++|++++++  
T Consensus        11 ~~~~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~s~~~~~~   90 (199)
T d1olma3          11 GGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWK   90 (199)
T ss_dssp             BEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCH
T ss_pred             CccccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECCCCchhhhcc
Confidence            358999999999999999999864    4688899999999999887754       245689999999999999988  


Q ss_pred             -cHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCC
Q 045016          117 -DIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGK  195 (204)
Q Consensus       117 -~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~  195 (204)
                       .++.+++++++++++||++++++||||+|++++++|+++|+|++++|++||+++++ ++++.|.++|++++||++|||+
T Consensus        91 ~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~-~~~~~L~~~i~~~~lP~~yGGt  169 (199)
T d1olma3          91 PAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEYGGT  169 (199)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBGGGTSS
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCC-CCHHHHHHhCCHhhCCHHhCCC
Confidence             46889999999999999999999999999999999999999999999999999985 5568899999999999999999


Q ss_pred             CCCccC
Q 045016          196 LPLVPI  201 (204)
Q Consensus       196 ~~~~~~  201 (204)
                      +++.+.
T Consensus       170 ~~~~~~  175 (199)
T d1olma3         170 MTDPDG  175 (199)
T ss_dssp             BCCTTC
T ss_pred             CCCCCC
Confidence            987554

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-35  Score=215.65  Aligned_cols=151  Identities=26%  Similarity=0.362  Sum_probs=135.2

Q ss_pred             cceeeCCCCCCCcEEEEecCCCCCC----CCCHHHHHHHHHHHHHHHHHhC--------CCCCceEEEEEeCCCCCCCCc
Q 045016           49 ILNMQGFDKKGRPILVAFASRHKPS----DGTLEDFKRFVVYCLDKICAKM--------PKGHEKFVYIGDLQGWGYSCS  116 (204)
Q Consensus        49 ~~~~~g~d~~g~pV~~~~~~~~~~~----~~~~~~~~~~~~~~~e~~~~~~--------~~~~~~~~~iiD~~g~~~~~~  116 (204)
                      ..++||+|++||||++++++++++.    ..+.+++++++++.+|.+++..        ...++++++|+|++|++++++
T Consensus        12 p~~~~G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g~s~~~~   91 (203)
T d1auaa2          12 PQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSA   91 (203)
T ss_dssp             CCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHH
T ss_pred             CCcCCCCCCCCCEEEEEECCCCChHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEECCCCChHHh
Confidence            4578999999999999999998853    4588999999999999887532        345689999999999999988


Q ss_pred             c--HHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCC
Q 045016          117 D--IRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGG  194 (204)
Q Consensus       117 ~--~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG  194 (204)
                      .  .+.++.++++++++||++++++||||+|++++++|+++++|++++|++||+++++ ++.+.|.++|++|+||++|||
T Consensus        92 ~~~~~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t~~KI~~~~~-~~~~~L~~~id~~~LP~~~GG  170 (203)
T d1auaa2          92 YSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS-SYQKELLKQIPAENLPVKFGG  170 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS-CCHHHHTTTSCSSSSBGGGTS
T ss_pred             hhHHHHHHHHHHHHHHhChHhhcceEEECCcHHHHHHHHHHHhhcCHHHhhceeecCC-CCHHHHHhhCCHhhChHHhCC
Confidence            4  5678899999999999999999999999999999999999999999999999985 557899999999999999999


Q ss_pred             CCCCcc
Q 045016          195 KLPLVP  200 (204)
Q Consensus       195 ~~~~~~  200 (204)
                      +++|..
T Consensus       171 ~~~~~~  176 (203)
T d1auaa2         171 KSEVDE  176 (203)
T ss_dssp             CBCCCG
T ss_pred             CCcCCC
Confidence            998754

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.6e-11  Score=73.50  Aligned_cols=36  Identities=36%  Similarity=0.616  Sum_probs=33.3

Q ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccCCCCC
Q 045016            1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLI   36 (204)
Q Consensus         1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~~~~~   36 (204)
                      +|+|||||++|||++|.+++++|++||+++++|..+
T Consensus        37 ~LlRFLrAr~fdv~kA~~ml~~~l~WR~~~~vD~Il   72 (75)
T d1olma1          37 FLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNII   72 (75)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGG
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHcCchhhh
Confidence            589999999999999999999999999999987643

>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: N-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=2.8e-10  Score=70.51  Aligned_cols=34  Identities=35%  Similarity=0.689  Sum_probs=31.8

Q ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccCCC
Q 045016            1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNG   34 (204)
Q Consensus         1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~~~   34 (204)
                      +|+|||||++||+++|.+++.++++||++++++.
T Consensus        54 ~llRfLrAr~fd~~~a~~ml~~~l~wR~~~~~d~   87 (93)
T d1auaa1          54 TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDT   87 (93)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHHHhCcch
Confidence            5899999999999999999999999999998764

>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.4e-09  Score=62.75  Aligned_cols=32  Identities=44%  Similarity=0.886  Sum_probs=29.7

Q ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccCC
Q 045016            1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPN   33 (204)
Q Consensus         1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~~   33 (204)
                      +|+||||+++||+++|.++|++|++||+++ |+
T Consensus        27 ~LlrFLRarkf~~~ka~~~l~~y~~~R~~~-pe   58 (66)
T d1r5la1          27 FLLRFLRARDFDLDLAWRLLKNYYKWRAEC-PE   58 (66)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHC-HH
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHHHC-HH
Confidence            589999999999999999999999999995 54

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.44  E-value=0.38  Score=23.61  Aligned_cols=20  Identities=25%  Similarity=0.167  Sum_probs=17.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHH
Q 045016            3 RRFLRARDLDIEKASAMLLK   22 (204)
Q Consensus         3 lrfL~~~~~~v~~a~~~l~~   22 (204)
                      ++=|.+.++||++|.+.|.+
T Consensus        21 i~AL~~t~Gdv~~Aie~Ll~   40 (41)
T d2daha1          21 LQALIATGGDVDAAVEKLRQ   40 (41)
T ss_dssp             HHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHh
Confidence            46688999999999999876

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.59  E-value=0.78  Score=23.48  Aligned_cols=21  Identities=29%  Similarity=0.047  Sum_probs=18.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHH
Q 045016            3 RRFLRARDLDIEKASAMLLKY   23 (204)
Q Consensus         3 lrfL~~~~~~v~~a~~~l~~~   23 (204)
                      ++-|.++++||+.|.+.|.+.
T Consensus        27 i~AL~~t~GdV~~Aie~Ll~~   47 (50)
T d2dnaa1          27 LQALIATDGDTNAAIYKLKSS   47 (50)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHhc
Confidence            467899999999999998753