Citrus Sinensis ID: 045193

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MVTIPLLAADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGKNCYQ
Secondary Structure (PSIPRED)
cEEEEEEEEccccccccccEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEcEEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccEEEHEHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcEEEEEEcEEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
mvtipllaadnrkrVLVGgwkskedlsephvteiGRFAVMstkkrsknefkfksvekgktkvvSSTNYRLILVVKDGKNCYQ
Flexible Loop (DISEMBL)
mvtipllaadnrkrvlvggwkskedlsephvteigrfavmstkkrsknefkfksvekgktkvvsstnyrlilvvkdgkncyq
Low Complexity Region (SEG)
MVTIPLLAADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGKNCYQ
Disordered region (IsUnstruct)
******LAA*NRKRVLVGGWK***********EIGRFA**********************KVVSSTNYRLILVVKDG*****
Disordered Region (DISOPRED)
MVTIPL*AADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLIL**********
Disordered Region (DISEMBL)
MVTIPLLAADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGKNCYQ
Disordered Region (DISPRO)
MVTIPLLAADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVTIPLLAADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGKNCYQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q6TPK4	116	Cysteine proteinase inhib	N/A	no	0.804	0.568	0.424	8e-11
Q41916	122	Cysteine proteinase inhib	yes	no	0.743	0.5	0.491	1e-10
Q10J94	123	Cysteine proteinase inhib	yes	no	0.743	0.495	0.393	2e-08
Q10Q46	113	Cysteine proteinase inhib	no	no	0.719	0.522	0.35	3e-05
Q10Q47	117	Putative cysteine protein	no	no	0.670	0.470	0.385	0.0003

>sp|Q6TPK4|CYT1_ACTDE Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa PE=1 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 44/66 (66%)

Query: 12 RKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLI 71
          RK V  GGW+  E L+   V ++ +FAV    K++ +E +++SV +G T+VV+ TNYRL+
Sbjct: 24 RKLVAAGGWRPIESLNSAEVQDVAQFAVSEHNKQANDELQYQSVVRGYTQVVAGTNYRLV 83

Query: 72 LVVKDG 77
          +  KDG
Sbjct: 84 IAAKDG 89

Specific inhibitor of papain family cysteine proteinases. Inhibits papain, chymopapain, bromelain, ficin, human cathepsins B, H and L, actinidain and house dustmite endopeptidase 1, but does not inhibit human bleomycin hydrolase. Inhibits papain with an IC(50) of 2.47 nM. Does not inhibit cysteine proteinases belonging to other families including clostripain, streptopain and calpain.
Actinidia deliciosa (taxid: 3627)

>sp|Q41916|CYT5_ARATH Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana GN=CYS5 PE=2 SV=2

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 41/61 (67%)

Query: 17 VGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKD 76
          VGGW    ++++P V EIG FAV    KRS++  KF++V  G+T+VVS TNYRL +   D
Sbjct: 28 VGGWSPISNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSGETQVVSGTNYRLKVAAND 87

Query: 77 G 77
          G
Sbjct: 88 G 88

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10J94|CYT8_ORYSJ Cysteine proteinase inhibitor 8 OS=Oryza sativa subsp. japonica GN=Os03g0429000 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 16 LVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVK 75
          LVGGW    D+ +PH+ E+G +AV      S +  +F+ V  G+ +VVS  NYRL++   
Sbjct: 31 LVGGWSPITDVGDPHIQELGGWAVERHASLSSDGLRFRRVTSGEQQVVSGMNYRLVVSAS 90

Query: 76 D 76
          D
Sbjct: 91 D 91

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10Q46|CYT6_ORYSJ Cysteine proteinase inhibitor 6 OS=Oryza sativa subsp. japonica GN=Os03g0210200 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 19 GWKSKEDLSEPHVTEIGRFAVMSTKKRS-KNEFKFKSVEKGKTKVVSSTNYRLILVVKDG 77
          GW   +++ +PH+ E+GR+A+    + S  +E  F  V  G+ +VVS  NYRL +    G
Sbjct: 22 GWSPIKNIDDPHIQELGRWAITENNRVSPSDELTFHRVTGGEQQVVSGMNYRLEIEAASG 81

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10Q47|CYT7_ORYSJ Putative cysteine proteinase inhibitor 7 OS=Oryza sativa subsp. japonica GN=Os03g0210100 PE=3 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 17 VGGWKSKEDLSEPHVTEIGRFAVMSTKKR-SKNEFKFKSVEKGKTKVVSSTNYRLIL 72
          VG W+   D+++PHV E+GR+AV    +  +     F+ V  G+ +VV+  NYRL L
Sbjct: 27 VGSWEPV-DINDPHVQELGRWAVAEEDRGVAAGGLTFERVTDGEKQVVAGVNYRLTL 82

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
11596186	118	cystatin-like protein [Citrus x paradisi	0.963	0.669	0.632	9e-20
297741794	146	unnamed protein product [Vitis vinifera]	0.804	0.452	0.484	3e-11
359495539	118	PREDICTED: cysteine proteinase inhibitor	0.804	0.559	0.484	4e-11
225469984	112	PREDICTED: cysteine proteinase inhibitor	0.768	0.562	0.507	4e-11
147854421	118	hypothetical protein VITISV_013491 [Viti	0.804	0.559	0.484	5e-11
289583687	120	phytocystatin 5 [Brassica rapa subsp. pe	0.743	0.508	0.508	1e-10
297790905	122	hypothetical protein ARALYDRAFT_494218 [	0.780	0.524	0.468	2e-10
89257481	120	cystatin domain containing protein [Bras	0.743	0.508	0.491	3e-10
449527163	118	PREDICTED: cysteine proteinase inhibitor	0.865	0.601	0.486	5e-10
357480545	117	Cysteine proteinase inhibitor [Medicago	0.841	0.589	0.449	5e-10

>gi|11596186|gb|AAG38521.1|AF283536_1 cystatin-like protein [Citrus x paradisi]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 60/79 (75%)

Query: 1  MVTIPLLAADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKT 60
          +  +PLLAA +RK  LVGGWK  ED  E HV EIG+FAV    K+SK+  KF+SVEKG+T
Sbjct: 13 LSVVPLLAAGDRKGALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGET 72

Query: 61 KVVSSTNYRLILVVKDGKN 79
          +VVS TNYRLILVVKDG +
Sbjct: 73 QVVSGTNYRLILVVKDGPS 91

Source: Citrus x paradisi

Species: Citrus x paradisi

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741794|emb|CBI33099.3| unnamed protein product [Vitis vinifera]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 45/66 (68%)

Query: 12  RKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLI 71
           R   L GGW+  +++S+P V EIG FAV    K++    KF+SV  G+T+VVS TNYRL+
Sbjct: 54  RTEALAGGWRPIKNISDPRVQEIGEFAVTEHNKQATESLKFQSVVSGETQVVSGTNYRLV 113

Query: 72  LVVKDG 77
           +V +DG
Sbjct: 114 VVAEDG 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495539|ref|XP_003635016.1| PREDICTED: cysteine proteinase inhibitor 1-like [Vitis vinifera]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 45/66 (68%)

Query: 12 RKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLI 71
          R   L GGW+  +++S+P V EIG FAV    K++    KF+SV  G+T+VVS TNYRL+
Sbjct: 26 RTEALAGGWRPIKNISDPRVQEIGEFAVTEHNKQATESLKFQSVVSGETQVVSGTNYRLV 85

Query: 72 LVVKDG 77
          +V +DG
Sbjct: 86 VVAEDG 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469984|ref|XP_002277752.1| PREDICTED: cysteine proteinase inhibitor 5-like [Vitis vinifera]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 45/63 (71%)

Query: 15 VLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVV 74
           L+GGW   ED+  PHV EIG+FAV +  K +  + KF+SV KG+T+VV+ TNYRL ++ 
Sbjct: 24 ALLGGWSPIEDVKNPHVQEIGKFAVEAHNKLTATKLKFQSVIKGQTQVVAGTNYRLTVMA 83

Query: 75 KDG 77
          K+G
Sbjct: 84 KNG 86

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854421|emb|CAN82794.1| hypothetical protein VITISV_013491 [Vitis vinifera]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 45/66 (68%)

Query: 12 RKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLI 71
          R   L GGW+  +++S+P V EIG FAV    K++    KF+SV  G+T+VVS TNYRL+
Sbjct: 26 RTEALAGGWRPIKNISDPXVQEIGEFAVTEHNKQAXESLKFQSVVSGETQVVSGTNYRLV 85

Query: 72 LVVKDG 77
          +V +DG
Sbjct: 86 VVAEDG 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289583687|gb|ADD10748.1| phytocystatin 5 [Brassica rapa subsp. pekinensis]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 43/61 (70%)

Query: 17 VGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKD 76
          VGGW+   D+++PHV EIGRF+V     +SK+  KF +V  G+T+VV+  NYRLI+ V D
Sbjct: 26 VGGWRPLSDVNDPHVVEIGRFSVSEYNMQSKSGLKFVAVVSGETQVVAGMNYRLIVAVND 85

Query: 77 G 77
          G
Sbjct: 86 G 86

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790905|ref|XP_002863337.1| hypothetical protein ARALYDRAFT_494218 [Arabidopsis lyrata subsp. lyrata] gi|297309172|gb|EFH39596.1| hypothetical protein ARALYDRAFT_494218 [Arabidopsis lyrata subsp. lyrata]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 44/64 (68%)

Query: 17 VGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKD 76
          VGGW    ++++PHV EIG FAV    KRS++  KF++V +G+T+VV+ TNYRL +   D
Sbjct: 28 VGGWSPISNVTDPHVVEIGEFAVSEYNKRSESGLKFETVVRGETQVVAGTNYRLTVAAND 87

Query: 77 GKNC 80
          G+  
Sbjct: 88 GEGA 91

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89257481|gb|ABD64972.1| cystatin domain containing protein [Brassica oleracea]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 43/61 (70%)

Query: 17 VGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKD 76
          VGGW+   D+++PHV EIG+F+V    K+SK   KF +V  G+++VV+  NYRLI+ V D
Sbjct: 26 VGGWRPLSDVNDPHVVEIGKFSVSEYNKQSKAGLKFVAVVSGESQVVAGMNYRLIVAVND 85

Query: 77 G 77
          G
Sbjct: 86 G 86

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527163|ref|XP_004170582.1| PREDICTED: cysteine proteinase inhibitor 5-like [Cucumis sativus]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 9  ADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKN-EFKFKSVEKGKTKVVSSTN 67
          A  RK  ++GGW    DL +PHV EIG+FAV    K+SK    +FKSV  G+T+VV+ TN
Sbjct: 21 AAARKGSMLGGWSKIPDLKDPHVEEIGKFAVAEYNKQSKGVAIEFKSVVSGETQVVAGTN 80

Query: 68 YRLILVVKDGKN 79
          YRL++  K G++
Sbjct: 81 YRLLIDAKRGES 92

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480545|ref|XP_003610558.1| Cysteine proteinase inhibitor [Medicago truncatula] gi|355511613|gb|AES92755.1| Cysteine proteinase inhibitor [Medicago truncatula]

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query: 9  ADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNY 68
          A  R +   GGW   +D+++PHVTEI  FAV    +RS  + KF+ V  G+++VV+ TNY
Sbjct: 20 AAARNQFAPGGWSPIDDINDPHVTEIANFAVTEYDRRSGAKLKFEKVINGESQVVAGTNY 79

Query: 69 RLILVVKDG 77
          RL L   DG
Sbjct: 80 RLTLSASDG 88

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:2168973	122	AT5G47550 [Arabidopsis thalian	0.902	0.606	0.441	6.4e-12
UNIPROTKB|Q6TPK4	116	Q6TPK4 "Cysteine proteinase in	0.939	0.663	0.363	2.2e-11
TAIR|locus:2130709	117	AT4G16500 [Arabidopsis thalian	0.743	0.521	0.360	3.4e-06
TAIR|locus:2058515	125	CYSA "cystatin A" [Arabidopsis	0.792	0.52	0.272	0.00073

TAIR|locus:2168973 AT5G47550 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/77 (44%), Positives = 49/77 (63%)

Query:     1 MVTIPLLAADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKT 60
             +V +PL A+   +   VGGW    ++++P V EIG FAV    KRS++  KF++V  G+T
Sbjct:    15 VVLLPLYASAAAR---VGGWSPISNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSGET 71

Query:    61 KVVSSTNYRLILVVKDG 77
             +VVS TNYRL +   DG
Sbjct:    72 QVVSGTNYRLKVAANDG 88

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IDA

UNIPROTKB|Q6TPK4 Q6TPK4 "Cysteine proteinase inhibitor 1" [Actinidia deliciosa (taxid:3627)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 28/77 (36%), Positives = 47/77 (61%)

Query:     1 MVTIPLLAADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKT 60
             ++ +       RK V  GGW+  E L+   V ++ +FAV    K++ +E +++SV +G T
Sbjct:    13 LLALSAAVVGGRKLVAAGGWRPIESLNSAEVQDVAQFAVSEHNKQANDELQYQSVVRGYT 72

Query:    61 KVVSSTNYRLILVVKDG 77
             +VV+ TNYRL++  KDG
Sbjct:    73 QVVAGTNYRLVIAAKDG 89

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IDA

TAIR|locus:2130709 AT4G16500 [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query:    17 VGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKD 76
             +G  K  +++S+P V  + ++A+    K SK +  F  V +G T+VVS T Y L +  KD
Sbjct:    29 LGSRKPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTKYDLKIAAKD 88

Query:    77 G 77
             G
Sbjct:    89 G 89

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0030234 "enzyme regulator activity" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2058515 CYSA "cystatin A" [Arabidopsis thaliana (taxid:3702)]

 Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
 Identities = 18/66 (27%), Positives = 34/66 (51%)

Query:    13 KRVLVGGWKS-KEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLI 71
             K +++GG    + + +   +  + RFA+    K+     +FK + K + +VV+ T Y L 
Sbjct:    31 KTMMLGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLT 90

Query:    72 LVVKDG 77
             L  K+G
Sbjct:    91 LEAKEG 96


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.367    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        82   0.00091  102 3  11 22  0.44    29
                                                     29  0.43    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  506 (54 KB)
  Total size of DFA:  93 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.28u 0.26s 9.54t   Elapsed:  00:00:01
  Total cpu time:  9.28u 0.26s 9.54t   Elapsed:  00:00:01
  Start:  Sat May 11 05:21:02 2013   End:  Sat May 11 05:21:03 2013

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00013094001 SubName- Full=Chromosome undetermined scaffold_435, whole genome shotgun sequence; Flags- Fragment; (140 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	82
cd00042	105	cd00042, CY, Cystatin-like domain; Cystatins are a	8e-05
smart00043	107	smart00043, CY, Cystatin-like domain	3e-04
pfam00031	92	pfam00031, Cystatin, Cystatin domain	6e-04

>gnl|CDD|238002 cd00042, CY, Cystatin-like domain; Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins

 Score = 37.5 bits (87), Expect = 8e-05
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 18 GGWKSKEDLSEPHVTEIGRFAVMS-TKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKD 76
          GG       ++P V E+  FAV    KK +    +F  V   K++VV+ TNY + +   D
Sbjct: 1  GGPSDI-PANDPEVQELADFAVAEYNKKSNDKYLEFFKVLSAKSQVVAGTNYYITVEAGD 59

Query: 77 GK 78
            
Sbjct: 60 TN 61

However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains. Length = 105

>gnl|CDD|214484 smart00043, CY, Cystatin-like domain

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 16 LVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKN--EFKFKSVEKGKTKVVSSTNYRLILV 73
           +GG  S    ++P V E   FAV    K+S +  E +   V   K++VV+ TNY L + 
Sbjct: 2  CLGGP-SDVPPNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNYYLKVE 60

Query: 74 VKDGKNC 80
          V +  NC
Sbjct: 61 VGET-NC 66

Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains. Length = 107

>gnl|CDD|215667 pfam00031, Cystatin, Cystatin domain

 Score = 35.0 bits (81), Expect = 6e-04
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 25 DLSEPHVTEIGRFAVMSTKKRSKNE-FKFKSVEKGKTKVVSSTNYRLILVVKDGKNC 80
          + ++P V E   FA+     +S N  F+   V + K++VV+  NY + + V +  NC
Sbjct: 7  NDNDPEVQEALDFALAKYNAKSNNYYFELVEVLRAKSQVVAGMNYYIKVEVGET-NC 62

Very diverse family. Attempts to define separate sub-families failed. Typically, either the N-terminal or C-terminal end is very divergent. But splitting into two domains would make very short families. pfam00666 are related to this family but have not been included. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
PF00031	94	Cystatin: Cystatin domain; InterPro: IPR000010 Pep	99.8
smart00043	107	CY Cystatin-like domain. Cystatins are a family of	99.75
cd00042	105	CY Substituted updates: Jan 30, 2002	99.75
PF07430	202	PP1: Phloem filament protein PP1; InterPro: IPR009	99.62
PF07430	202	PP1: Phloem filament protein PP1; InterPro: IPR009	99.08
TIGR01638	92	Atha_cystat_rel Arabidopsis thaliana cystatin-rela	98.72
PF06907	220	Latexin: Latexin; InterPro: IPR009684 This family	88.38
PF05679	499	CHGN: Chondroitin N-acetylgalactosaminyltransferas	88.17
TIGR01572	265	A_thl_para_3677 Arabidopsis paralogous family TIGR	86.22

>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.80  E-value=6e-19  Score=106.58  Aligned_cols=59  Identities=29%  Similarity=0.433  Sum_probs=54.7

Q ss_pred             cceEECCCCCCHHHHHHHHHHHHHHHhhcCCcee--EeeEEEEEEEeecceEEEEEEEEeeC
Q 045193           18 GGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFK--FKSVEKGKTKVVSSTNYRLILVVKDG   77 (82)
Q Consensus        18 Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~--~~~V~~~~~QVVaG~nY~l~v~~~~g   77 (82)
                      |||+++ |++||+++++++||+.+||+++++.+.  +.+|+++++|||+|++|+|+++++++
T Consensus         1 Gg~~~~-~~~dp~v~~~~~~al~~~N~~~~~~~~~~~~~v~~a~~QvV~G~~Y~i~~~~~~t   61 (94)
T PF00031_consen    1 GGPSPV-DPNDPEVQEAAEFALDKFNEQSNSGYKFKLVKVISATTQVVAGINYYIEFEVGET   61 (94)
T ss_dssp             SSEEEE-CTTSHHHHHHHHHHHHHHHHHSTTSEEEEEEEEEEEEEEESSSEEEEEEEEEEEE
T ss_pred             CCCccC-CCCCHHHHHHHHHHHHHHHHhCcccCcceeeeeeEEEEeecCCceEEEEEEEEcc
Confidence            899999 789999999999999999999866554  58999999999999999999999885

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....

>smart00043 CY Cystatin-like domain

Probab=99.75  E-value=2.6e-18  Score=106.18  Aligned_cols=61  Identities=31%  Similarity=0.465  Sum_probs=57.3

Q ss_pred             cccceEECCCCCCHHHHHHHHHHHHHHHhhcCCcee--EeeEEEEEEEeecceEEEEEEEEeeC
Q 045193           16 LVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFK--FKSVEKGKTKVVSSTNYRLILVVKDG   77 (82)
Q Consensus        16 ~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~--~~~V~~~~~QVVaG~nY~l~v~~~~g   77 (82)
                      ++|||+++ +.+||+++++++||+.+||+++++.|.  +++++++++|||+|++|+|++++.++
T Consensus         2 ~~Gg~~~~-~~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~~v~~a~~QvvaG~~y~l~~~v~~t   64 (107)
T smart00043        2 CLGGPSDV-PPNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNYYLKVEVGET   64 (107)
T ss_pred             CCCCCccC-CCCCHHHHHHHHHHHHHHHHhcccchhhhhhhhheeeeeeecceEEEEEEEEEec
Confidence            68999999 789999999999999999999998887  58999999999999999999999875

Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.

>cd00042 CY Substituted updates: Jan 30, 2002

Probab=99.75  E-value=1e-17  Score=103.02  Aligned_cols=59  Identities=32%  Similarity=0.507  Sum_probs=55.7

Q ss_pred             cceEECCCCCCHHHHHHHHHHHHHHHhhcCCc-eeEeeEEEEEEEeecceEEEEEEEEeeC
Q 045193           18 GGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNE-FKFKSVEKGKTKVVSSTNYRLILVVKDG   77 (82)
Q Consensus        18 Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~-~~~~~V~~~~~QVVaG~nY~l~v~~~~g   77 (82)
                      |||.++ +++||+++++++||+.+||+++++. +.+.+|+++++|||+|++|+|++++.+.
T Consensus         1 gg~~~~-~~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~i~~~~~QvvaG~~y~i~~~~~~t   60 (105)
T cd00042           1 GGPSDI-PANDPEVQELADFAVAEYNKKSNDKYLEFFKVLSAKSQVVAGTNYYITVEAGDT   60 (105)
T ss_pred             CCCccC-CCCCHHHHHHHHHHHHHHHhhcCccceeEEEEEEEEEEEEeeeEEEEEEEEecc
Confidence            899998 7999999999999999999999988 7779999999999999999999999875

>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1

Probab=99.62  E-value=5.5e-15  Score=100.64  Aligned_cols=69  Identities=28%  Similarity=0.512  Sum_probs=61.9

Q ss_pred             eeeccCcccccceEECCCCCCHHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEeec--ceEEEEEEEEeeC
Q 045193            8 AADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVS--STNYRLILVVKDG   77 (82)
Q Consensus         8 ~~~~~~~~~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QVVa--G~nY~l~v~~~~g   77 (82)
                      .+.+..++...+|.+++|+++|++|++++|||.||| +.+++++|.+|.+++.|=++  |++|+|+|.+.|+
T Consensus       105 ~v~pv~~p~~~~Wi~I~nin~p~VQeLgkFAV~EhN-K~gd~LkF~KV~eGw~q~l~~d~ikYrLhI~AkDg  175 (202)
T PF07430_consen  105 VVYPVATPQSKKWIPIPNINNPFVQELGKFAVIEHN-KAGDKLKFEKVYEGWYQDLGNDGIKYRLHIVAKDG  175 (202)
T ss_pred             eeccccCcccCCCEECCCCCcHHHHHHHHHHHHHHh-hcCCceEEEEEeeEEEEeccCCCceEEEEEEeecC
Confidence            445666777899999999999999999999999999 57899999999999999664  7999999999998

This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].

>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1

Probab=99.08  E-value=2.4e-10  Score=78.05  Aligned_cols=66  Identities=29%  Similarity=0.407  Sum_probs=60.2

Q ss_pred             ccCcccccceEECCCCCCHHHHHHHHHHHHHHHhhcCCceeEeeEEEEE--EEeecceEEEEEEEEee
Q 045193           11 NRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGK--TKVVSSTNYRLILVVKD   76 (82)
Q Consensus        11 ~~~~~~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~--~QVVaG~nY~l~v~~~~   76 (82)
                      |.+....+||.+++|+.+|.+|+++.|++.+++.+.++.++|.+|++++  .|...+++|||.+++.|
T Consensus         1 ~~~~~~~~~w~~ip~v~~~~~q~v~~~~veq~k~~~~~~l~~~~v~egwy~el~~~~~~yrlhv~a~d   68 (202)
T PF07430_consen    1 CGQVPFSPKWIKIPDVKEPCLQEVAKFAVEQFKIQYGDSLKFRSVVEGWYFELCPNSLKYRLHVKAID   68 (202)
T ss_pred             CCCcccCcccccCCcccchHHHHHHHHHHHHHhhhcccceeeeeeeeceeecccccceeEEEeehhhh
Confidence            3456678999999999999999999999999999999999999999999  56889999999998765

This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].

>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein

Probab=98.72  E-value=8.6e-08  Score=58.86  Aligned_cols=53  Identities=6%  Similarity=0.042  Sum_probs=49.1

Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEeecceEEEEEEEEeeCc
Q 045193           26 LSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGK   78 (82)
Q Consensus        26 ~~d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QVVaG~nY~l~v~~~~g~   78 (82)
                      .+.+.+..++++|+++||...+..+.|++|++|..|..+|..|+|++.+.|..
T Consensus        10 T~rd~~~~la~~al~k~N~~~~t~lEfV~vVrAn~~~~~g~~~yITF~Ard~~   62 (92)
T TIGR01638        10 TNRDLLERLSYVASKKYNDTKFLNLELVEVVRANYRGGAKSKSYITFEARDKP   62 (92)
T ss_pred             CHHHHHHHHHHHHHHHhhhhcCceEEEEEEEEEEeeccceEEEEEEEEEecCC
Confidence            45677899999999999999999999999999999999999999999998864

This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.

>PF06907 Latexin: Latexin; InterPro: IPR009684 This family consists of several animal specific latexin and proteins related to latexin that belong to MEROPS proteinase inhibitor family I47, clan I- []

Probab=88.38  E-value=5.4  Score=28.12  Aligned_cols=53  Identities=15%  Similarity=0.254  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhcCCcee---EeeEEEEEEEeec--ceEEEEEEEEeeC
Q 045193           25 DLSEPHVTEIGRFAVMSTKKRSKNEFK---FKSVEKGKTKVVS--STNYRLILVVKDG   77 (82)
Q Consensus        25 ~~~d~~vq~~a~fAv~~~n~~s~~~~~---~~~V~~~~~QVVa--G~nY~l~v~~~~g   77 (82)
                      +++.-..+.+|+-|..=+|-+.++..+   +.+|.+|+..++.  |-+|.|++.+.+-
T Consensus         3 ~p~h~~a~rAA~va~hy~N~~~GSP~~l~~l~~V~~a~~e~ip~~G~Ky~L~FSte~~   60 (220)
T PF06907_consen    3 NPSHRPAQRAARVAQHYINYRAGSPSRLFVLQQVQKARAEDIPGEGCKYDLVFSTEEY   60 (220)
T ss_dssp             -TTSHHHHHHHHHHHHHHHHHH-BTTB-EEEEEEEEEEEEEETTTEEEEEEEEEEEET
T ss_pred             CCcchHHHHHHHHHHHHhccccCCCceeeehhhhhhhhheeccCCCCEEEEEEEhHHh
Confidence            455666788999888888876665443   3799999999764  8999999998774

Latexin, a protein possessing inhibitory activity against rat carboxypeptidase A1 (CPA1) and CPA2 (MEROPS peptidase family M14A), is expressed in a neuronal subset in the cerebral cortex and cells in other neural and non-neural tissues of rat [, ]. OCX-32, the 32 kDa eggshell matrix protein, is present at high levels in the uterine fluid during the terminal phase of eggshell formation, and is localised predominantly in the outer eggshell. The timing of OCX-32 secretion into the uterine fluid suggests that it may play a role in the termination of mineral deposition []. OCX-32 protein possesses limited identity (32%) to two unrelated proteins: latexin and to a skin protein that is encoded by a retinoic acid receptor-responsive gene, TIG1. Tazarotene Induced Gene 1 (TIG1) is a putative 228 transmembrane protein with a small N-terminal intracellular region, a single membrane-spanning hydrophobic region, and a large C-terminal extracellular region containing a glycosylation signal. TIG1 is up-regulated by retinoic acid receptor but not by retinoid X receptor-specific synthetic retinoids []. TIG1 may be a tumour suppressor gene whose diminished expression is involved in the malignant progression of prostate cancer [].; PDB: 1WNH_A 2BO9_B.

>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase

Probab=88.17  E-value=2.7  Score=32.50  Aligned_cols=50  Identities=16%  Similarity=0.310  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEe--ecceEEEEEEEEeeC
Q 045193           28 EPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKV--VSSTNYRLILVVKDG   77 (82)
Q Consensus        28 d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QV--VaG~nY~l~v~~~~g   77 (82)
                      -.++.++.+.|+...|+.+...+.|.+++.+...+  .-|+.|.|.+.....
T Consensus       160 ~~dl~~vi~~a~~~ln~~~~~~~~~~~l~~GY~R~dp~rG~~Y~Ldl~l~~~  211 (499)
T PF05679_consen  160 REDLDDVIEQAMEELNRKSRRVLEFRDLINGYRRFDPTRGMDYILDLLLKYK  211 (499)
T ss_pred             HHHHHHHHHHHHHHHhccccccEEeeeeeeEEEEecCCCCceEEEEEEEeec
Confidence            36789999999999998888889999999998775  679999999876543

Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane

>TIGR01572 A_thl_para_3677 Arabidopsis paralogous family TIGR01572

Probab=86.22  E-value=0.78  Score=33.09  Aligned_cols=49  Identities=14%  Similarity=0.228  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHhhcCCceeEeeEEEEEEEeecceEEEEEEEEeeCcc
Q 045193           31 VTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGKN   79 (82)
Q Consensus        31 vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QVVaG~nY~l~v~~~~g~~   79 (82)
                      +.-.|+.++-.||...+.+++|..|.+.-++..+=+.|+|++++-|-..
T Consensus        42 vklyAr~GLH~YN~~~GTNlel~~v~K~N~~~~~~~syyITL~A~DP~s   90 (265)
T TIGR01572        42 VKIYARVGLHRYNFLEGTNLELDHVDKFNKRMCALSSYYITLLAVDPDS   90 (265)
T ss_pred             HHHHHHhhhhhhhhccCccceehhhhhhccchhhheeeeEEEEEecCCc
Confidence            5888999999999999999999999999999998999999999988643

This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
1eqk_A	102	Oryzacystatin-I; alpha and beta proteins, cystatin	3e-14
2l4v_A	135	Cystatin; protease inhibitor, hydrolase inhibitor;	1e-13
3mwz_A	115	Sialostatin L2; antiparallel beta-sheet, hydrolase	5e-12
2w9q_A	87	Multicystatin; protease inhibitor, thiol protease	2e-11
3ima_B	91	Cysteine proteinase inhibitor; cystatin, tarocysta	3e-10
3l0r_A	115	Cystatin-2, OMC2; SOFT TICK, protease inhibitor, t	2e-09
3gax_A	120	Cystatin-C; cysteine protease inhibitor, 3D domain	6e-07
2kxg_A	95	Aspartic protease inhibitor; sqapi, protein, hydro	3e-06
2ch9_A	131	Cystatin F; inhibitor, cysteine protease inhibitor	4e-06
1roa_A	122	Cystatin D; inhibitor of cysteine pepidases, prote	5e-05
1yvb_I	111	Cystatin; cysteine protease-inhibitor complex, hyd	8e-05

>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2 Length = 102

 Score = 61.1 bits (148), Expect = 3e-14
 Identities = 17/67 (25%), Positives = 37/67 (55%)

Query: 11 NRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRL 70
          +    ++GG +   + ++ H+ ++ RFAV    K++ +  +F+ +   K +VV+ T Y  
Sbjct: 3  SDGGPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYF 62

Query: 71 ILVVKDG 77
           + VK+G
Sbjct: 63 TIEVKEG 69

>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus} Length = 135

 Score = 60.5 bits (146), Expect = 1e-13
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 8   AADNRKRVLVGGWKSK--EDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSS 65
             + R+  ++GG       + +     ++ RFAV     ++    +F  V K K +VVS 
Sbjct: 34  DQEPREHPIMGGIYDAPLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSG 93

Query: 66  TNYRLILVVKDG 77
             + L + V D 
Sbjct: 94  MMHYLTVEVNDA 105

>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A Length = 115

 Score = 55.8 bits (134), Expect = 5e-12
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 13 KRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEK---GKTKVVSSTNYR 69
          +  L GG++ + +  +P   E+  +A  +   +   +  F +V +    +T+ V+ TNYR
Sbjct: 2  ELALRGGYRERSNQDDPEYLEMAHYATSTWSAQQPGKTHFDTVVEVMKVETQTVAGTNYR 61

Query: 70 LILVVKDGK 78
          L L V +  
Sbjct: 62 LTLKVAEST 70

>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A Length = 87

 Score = 53.7 bits (129), Expect = 2e-11
 Identities = 13/61 (21%), Positives = 23/61 (37%)

Query: 19 GWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGK 78
          G  +  + +     E+ RFA+    K+     +F      K +VV+   Y + L   D  
Sbjct: 1  GIVNVPNPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDA 60

Query: 79 N 79
           
Sbjct: 61 G 61

>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} Length = 91

 Score = 50.7 bits (121), Expect = 3e-10
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 16 LVGGWKSKEDL-SEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVV 74
          L+GG    E   +   V E+ RFAV    K+     +F  + K K +VVS   + L + V
Sbjct: 2  LMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVEV 61

Query: 75 KD 76
           +
Sbjct: 62 IE 63

>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata} Length = 115

 Score = 49.4 bits (117), Expect = 2e-09
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 16 LVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVV 74
          + GGW  + D +E    E+  FA  S  +  +      +V++ +T+VV+  NY+L + +
Sbjct: 3  IPGGWTRQ-DPTEARFLELAHFATSSQTEGREFYDTVVTVKEVETQVVAGMNYKLTIEI 60

>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 1r4c_A Length = 120

 Score = 42.8 bits (100), Expect = 6e-07
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 8  AADNRKRVLVGGWKSKEDLSEPHVTEIGRFAV--MSTKKRSKNEFKFKSVEKGKTKVVSS 65
          ++  +   LVGG      + E  V     FAV   +         +   V + + ++V+ 
Sbjct: 1  SSPGKPPRLVGGPM-DASVEEEGVRRALDFAVGEYNKASNDMYHSRACQVVRARKQIVAG 59

Query: 66 TNYRLILVVKD 76
           NY L + +  
Sbjct: 60 VNYFLDVELCR 70

>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima} Length = 95

 Score = 40.2 bits (93), Expect = 3e-06
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 25 DLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKT---KVVSSTNYRLILVVKDG 77
           +++P V EI  FA+   K+ ++       V+ G+           Y LIL  K  
Sbjct: 13 SVNDPRVKEIAEFAL---KQHAEQNLILAGVDAGQIIKGIPHWDNYYNLILSAKHS 65

>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens} Length = 131

 Score = 41.0 bits (95), Expect = 4e-06
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 8  AADNRKRVLVGGWKSKEDLSEPHVTEIGRFAV--MSTKKRSKNEFKFKSVEKGKTKVVSS 65
          + D   RV  G  K     ++P V +  R++V   +        FK   + +   ++V  
Sbjct: 8  SQDLNSRVKPGFPK-TIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKG 66

Query: 66 TNYRLILVVKD 76
            Y L + +  
Sbjct: 67 LKYMLEVEIGR 77

>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A Length = 122

 Score = 37.6 bits (86), Expect = 5e-05
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 8  AADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRS---KNEFKFKSVEKGKTKVVS 64
          +A  + R L GG     DL++  V     FA+    K     +   +   V     ++V 
Sbjct: 2  SASAQSRTLAGGIH-ATDLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVG 60

Query: 65 STNYRLILVVKD 76
            NY   +    
Sbjct: 61 GVNYYFNVKFGR 72

>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A Length = 111

 Score = 37.0 bits (85), Expect = 8e-05
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 16 LVGGWKSKEDLSEPHVTEIGRFAV--MSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILV 73
          L+G      D ++  +    +FA+   +     K   +   V   K ++VS   Y L + 
Sbjct: 2  LLGAPV-PVDENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVE 60

Query: 74 VKD 76
          +  
Sbjct: 61 IGR 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
3ima_B	91	Cysteine proteinase inhibitor; cystatin, tarocysta	99.92
1eqk_A	102	Oryzacystatin-I; alpha and beta proteins, cystatin	99.91
3ul5_A	139	Canecystatin-1; defense, hydrolase inhibitor; 2.30	99.89
2l4v_A	135	Cystatin; protease inhibitor, hydrolase inhibitor;	99.88
2w9q_A	87	Multicystatin; protease inhibitor, thiol protease	99.87
2oct_A	98	Cystatin B; stefin, amyloid, domain-swapping, hand	99.87
1cyu_A	98	Cystatin A, stefin A; proteinase inhibitor (cystei	99.86
2o9u_X	97	Monellin chain B and monellin chain A; alternative	99.86
3mwz_A	115	Sialostatin L2; antiparallel beta-sheet, hydrolase	99.85
3gax_A	120	Cystatin-C; cysteine protease inhibitor, 3D domain	99.85
1yvb_I	111	Cystatin; cysteine protease-inhibitor complex, hyd	99.85
2ch9_A	131	Cystatin F; inhibitor, cysteine protease inhibitor	99.85
1roa_A	122	Cystatin D; inhibitor of cysteine pepidases, prote	99.84
2kxg_A	95	Aspartic protease inhibitor; sqapi, protein, hydro	99.82
3l0r_A	115	Cystatin-2, OMC2; SOFT TICK, protease inhibitor, t	99.81
2bo9_B	222	Human latexin, MUM; metallocarboxypeptidase, X-RAY	88.7
1kwi_A	101	Protegrin-3 precursor; cathelicidin motif, disulfi	84.98

>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} SCOP: d.17.1.0

Probab=99.92  E-value=1.3e-24  Score=131.59  Aligned_cols=65  Identities=31%  Similarity=0.433  Sum_probs=57.1

Q ss_pred             ccccceEECC-CCCCHHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEeecceEEEEEEEEeeCcc
Q 045193           15 VLVGGWKSKE-DLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGKN   79 (82)
Q Consensus        15 ~~~Gg~~~i~-~~~d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QVVaG~nY~l~v~~~~g~~   79 (82)
                      +++|||++++ +++||++|++++||+.+||+++|+.|.|.+|+++++|||+|+||+|++++++|+.
T Consensus         1 ~~~GG~~~~~~~~~d~~v~~~a~fav~~~n~~~n~~~~~~~Vv~a~~QVVaG~nY~l~v~~~~~~~   66 (91)
T 3ima_B            1 ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVEVIEGGK   66 (91)
T ss_dssp             CCBTCEEC------CHHHHHHHHHHHHHHHHHHTCCCEEEEEEEEEEEESSSEEEEEEEEEEETTE
T ss_pred             CCCcccccCcCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEEEeccEEEEEEEEEecCCc
Confidence            4789999996 6899999999999999999999999999999999999999999999999999753

>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2

Probab=99.91  E-value=9.4e-24  Score=129.85  Aligned_cols=66  Identities=26%  Similarity=0.470  Sum_probs=62.0

Q ss_pred             CcccccceEECCCCCCHHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEeecceEEEEEEEEeeCc
Q 045193           13 KRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGK   78 (82)
Q Consensus        13 ~~~~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QVVaG~nY~l~v~~~~g~   78 (82)
                      ...++|||++++|++||+++++++||+.+||+++|+.|.|.+|+++++|||+|+||+|+|++++++
T Consensus         5 ~~~~~GG~~~~~~~~~~~v~~~a~~Av~~~n~~~n~~~~~~~Vv~a~~QVVaG~~Y~l~v~~~~~~   70 (102)
T 1eqk_A            5 GGPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGD   70 (102)
T ss_dssp             SCSCSSSSEEECCTTCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEESSSEEEEEEEEEEETT
T ss_pred             cCCCCcccccCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEeccEEEEEEEEEecCC
Confidence            356899999985689999999999999999999999999999999999999999999999999975

>3ul5_A Canecystatin-1; defense, hydrolase inhibitor; 2.30A {Saccharum officinarum} PDB: 3ul6_A*

Probab=99.89  E-value=6.8e-23  Score=132.91  Aligned_cols=67  Identities=24%  Similarity=0.395  Sum_probs=51.8

Q ss_pred             cCcccccceEECC--CCCCHHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEeecceEEEEEEEEee-Cc
Q 045193           12 RKRVLVGGWKSKE--DLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKD-GK   78 (82)
Q Consensus        12 ~~~~~~Gg~~~i~--~~~d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QVVaG~nY~l~v~~~~-g~   78 (82)
                      ....++|||++++  +++||++|++++||+.+||+++|+.|.|++|+++++|||+|+||+|+|++.+ ++
T Consensus        41 ~~~~~~GG~~~i~~~~~ndpeVqela~fAV~e~Nkksn~~l~~~kVv~a~sQVVAG~nY~L~V~a~d~~g  110 (139)
T 3ul5_A           41 RRVGMVGDVRDAPAGHENDLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAGTMHHFTVQVKEAGG  110 (139)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEEEEEEEEEECSSC
T ss_pred             CCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEEEecCEEEEEEEEEecCCC
Confidence            3456899999995  6899999999999999999999999999999999999999999999999998 43

>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus}

Probab=99.88  E-value=1.2e-22  Score=131.11  Aligned_cols=69  Identities=25%  Similarity=0.337  Sum_probs=63.1

Q ss_pred             eccCcccccceEECC--CCCCHHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEeecceEEEEEEEEeeCc
Q 045193           10 DNRKRVLVGGWKSKE--DLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGK   78 (82)
Q Consensus        10 ~~~~~~~~Gg~~~i~--~~~d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QVVaG~nY~l~v~~~~g~   78 (82)
                      .+....++|||++++  +++|++++++++||+.+||+++|+.|.|++|+++++|||+|+||+|+|++++++
T Consensus        36 ~~~~~~~~GG~~~i~~~~~nd~evqe~a~fAv~e~N~~sn~~~~f~kVv~a~~QVVAG~nY~l~vev~~~~  106 (135)
T 2l4v_A           36 EPREHPIMGGIYDAPLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVEVNDAG  106 (135)
T ss_dssp             CCCCCCCCCCSSCCCCTTTTSHHHHHHHHHHHHHHHHHTSCCCEEEEEEEEEEECSSSEEEEEEEEEEETT
T ss_pred             ccccCCCCCccCcCCCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEecCEEEEEEEEEecCC
Confidence            344477899999993  289999999999999999999999999999999999999999999999999974

>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A

Probab=99.87  E-value=5.4e-22  Score=118.72  Aligned_cols=59  Identities=22%  Similarity=0.354  Sum_probs=56.9

Q ss_pred             ceEECCCCCCHHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEeecceEEEEEEEEeeC
Q 045193           19 GWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDG   77 (82)
Q Consensus        19 g~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QVVaG~nY~l~v~~~~g   77 (82)
                      ||++++|++||+++++++||+.+||+++|+.++|.+|+++++|||+|+||+|+++++++
T Consensus         1 G~~~~~~~~d~~v~~~~~fAv~~~n~~~n~~~~~~~vv~a~~QVVaG~~Y~l~v~~~~~   59 (87)
T 2w9q_A            1 GIVNVPNPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDD   59 (87)
T ss_dssp             CCEECSSTTSHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEEEEESSSEEEEEEEEEEET
T ss_pred             CcccCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEeccEEEEEEEEEecC
Confidence            79999889999999999999999999999999999999999999999999999999984

>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR isomerization, protein binding; 1.40A {Homo sapiens} PDB: 1stf_I*

Probab=99.87  E-value=1.8e-22  Score=124.03  Aligned_cols=62  Identities=18%  Similarity=0.207  Sum_probs=58.4

Q ss_pred             cccceEECCCCCCHHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEeecceEEEEEEEEeeCc
Q 045193           16 LVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGK   78 (82)
Q Consensus        16 ~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QVVaG~nY~l~v~~~~g~   78 (82)
                      ++|||+++ +++||++|++++||+.++|+++|..+.+.+++++++|||||+||+|++++++++
T Consensus         2 m~GG~~~~-~~~~~evq~i~~~a~~~~n~~~~~~~~~~~vv~~~tQVVAG~NY~ikv~v~~~~   63 (98)
T 2oct_A            2 MSGAPSAT-QPATAETQHIADQVRSQLEEKYNKKFPVFKAVSFKSQVVAGTNYFIKVHVGDED   63 (98)
T ss_dssp             CCSSCCCC-EECCHHHHHHHHHHHHHHHHHHTSCCSCCEEEEEEEEEEEEEEEEEEEECSTTC
T ss_pred             CcccCcCC-CCCCHHHHHHHHHHHHHHHhhcCCccceeEEEEEEEEEeCCEEEEEEEEECCCc
Confidence            79999999 579999999999999999999999999999999999999999999999997754

>1cyu_A Cystatin A, stefin A; proteinase inhibitor (cysteine); NMR {Homo sapiens} SCOP: d.17.1.2 PDB: 1cyv_A 1gd3_A 1dvc_A 1dvd_A 1n9j_A 1nb3_I* 1nb5_I* 3k9m_C 3kfq_C 3kse_D* 1gd4_A

Probab=99.86  E-value=3.8e-23  Score=126.34  Aligned_cols=62  Identities=23%  Similarity=0.311  Sum_probs=59.1

Q ss_pred             cccceEECCCCCCHHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEeecceEEEEEEEEeeCc
Q 045193           16 LVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGK   78 (82)
Q Consensus        16 ~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QVVaG~nY~l~v~~~~g~   78 (82)
                      ++|||+++ +++||+++++++||+.++|+++|+.|++.+|+++++|||||+||+|++++++++
T Consensus         2 ~~GG~~~~-~~~d~ev~~~a~~av~~~n~~~n~~~~~~~vv~a~~QVVaG~nY~l~v~~~~~~   63 (98)
T 1cyu_A            2 IPGGLSEA-KPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNK   63 (98)
T ss_dssp             CCSSCSSE-EESCTTHHHHHHHTCTTTTTSSCCSSSCEEEEEEEEECSSSCEEEEEEEECSSC
T ss_pred             CCcccccC-CCCCHHHHHHHHHHHHHHHhhcCCCcceEEEEEEEEEEecceEEEEEEEEcCCc
Confidence            68999999 799999999999999999999999999999999999999999999999998854

>2o9u_X Monellin chain B and monellin chain A; alternative conformations, 3-10 polyproline II helix, plant protein; 1.15A {Dioscoreophyllum cumminsii} SCOP: d.17.1.1 PDB: 3pxm_A 1m9g_A 3pyj_A 1fa3_A 1iv7_A 3q2p_A 1iv9_A 1mnl_A 1mol_A 1fuw_A 4mon_B 3mon_B 1krl_B 4mon_A 1krl_A 3mon_A 2q33_B* 2q33_A*

Probab=99.86  E-value=3.5e-22  Score=122.69  Aligned_cols=58  Identities=24%  Similarity=0.495  Sum_probs=55.0

Q ss_pred             ccceEECCCCCCHHHHHHHHHHHHHHHhhc-CCceeEeeEEEE-----------EEEeecceEEEEEEEEeeC
Q 045193           17 VGGWKSKEDLSEPHVTEIGRFAVMSTKKRS-KNEFKFKSVEKG-----------KTKVVSSTNYRLILVVKDG   77 (82)
Q Consensus        17 ~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s-~~~~~~~~V~~~-----------~~QVVaG~nY~l~v~~~~g   77 (82)
                      .|||++| |+ ||++|++|+|||++||+++ ++.++|.+|+++           ++| |+|+||+|+|++.++
T Consensus         1 ~Ggw~~i-dv-~~~iqela~FAV~e~nk~~~~~~L~f~~Vv~~~~~~~~~~~~~~~Q-VaG~nY~Ltlea~d~   70 (97)
T 2o9u_X            1 MGEWEII-DI-GPFTQNLGKFAVDEENKIGQYGRLTFNKVIRPCMKKTIYENEGFRE-IKGYEYQLYVYASDK   70 (97)
T ss_dssp             -CCCEEE-CC-SHHHHHHHHHHHHHHHHHCTTCSCCEEEEEEEEEEEEEECSSSSCS-EEEEEEEEEEEETTE
T ss_pred             CCCceEC-CC-CHHHHHHHHHHHHHHhccccCCCcEEEEEEEcccccccccchhhee-eccEEEEEEEEEeCC
Confidence            4999999 99 9999999999999999987 899999999999           999 999999999999876

>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A

Probab=99.85  E-value=3.3e-21  Score=120.32  Aligned_cols=62  Identities=27%  Similarity=0.442  Sum_probs=56.6

Q ss_pred             cccccceEECCCC-CCHHHHHHHHHHHHHHHhhcC-Cce--eEeeEEEEEEEeecceEEEEEEEEee
Q 045193           14 RVLVGGWKSKEDL-SEPHVTEIGRFAVMSTKKRSK-NEF--KFKSVEKGKTKVVSSTNYRLILVVKD   76 (82)
Q Consensus        14 ~~~~Gg~~~i~~~-~d~~vq~~a~fAv~~~n~~s~-~~~--~~~~V~~~~~QVVaG~nY~l~v~~~~   76 (82)
                      +.++|||+++ ++ +||+++++++||+.+||++++ +.+  ++.+|+++++|||+|+||+|++++++
T Consensus         3 ~~~~Gg~~~~-~~~~~~~v~~~~~~av~~~N~~sn~~~~~~~~~~V~~a~~QvVaG~~Y~l~v~v~~   68 (115)
T 3mwz_A            3 LALRGGYRER-SNQDDPEYLEMAHYATSTWSAQQPGKTHFDTVVEVMKVETQTVAGTNYRLTLKVAE   68 (115)
T ss_dssp             CCCSSCCEEE-CTTSCTHHHHHHHHHHHHHHHTSTTCCEEEEEEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred             cccCCcceEC-CCCCCHHHHHHHHHHHHHHHhhcCCcccceeeeeeeEEEeeccCCEEEEEEEEEEe
Confidence            4689999999 56 999999999999999999998 665  55899999999999999999999975

>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} SCOP: d.17.1.2 PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 3sva_A 3s67_A 1r4c_A

Probab=99.85  E-value=4.5e-21  Score=120.55  Aligned_cols=67  Identities=24%  Similarity=0.240  Sum_probs=55.1

Q ss_pred             eccCcccccceEECCCCCCHHHHHHHHHHHHHHHhhcCCc--eeEeeEEEEEEEeecceEEEEEEEEeeC
Q 045193           10 DNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNE--FKFKSVEKGKTKVVSSTNYRLILVVKDG   77 (82)
Q Consensus        10 ~~~~~~~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~--~~~~~V~~~~~QVVaG~nY~l~v~~~~g   77 (82)
                      ...++.++|||+++ +++||+++++++||+.+||+++++.  +++.+|+++++|||+|+||+|++++++.
T Consensus         3 ~~~~~~~~Gg~~~~-~~~d~~v~~~a~~av~~~N~~sn~~~~~~~~~v~~a~~QvVaG~~Y~l~v~v~~t   71 (120)
T 3gax_A            3 PGKPPRLVGGPMDA-SVEEEGVRRALDFAVGEYNKASNDMYHSRACQVVRARKQIVAGVNYFLDVELCRT   71 (120)
T ss_dssp             ---------CCEEE-CTTSHHHHHHHHHHHHHHHHHCCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEE
T ss_pred             CcccCccCCCCEeC-CCCCHHHHHHHHHHHHHHHhccCCcceeeEEEEEEEEEEEecCeEEEEEEEEEee
Confidence            34566789999999 7999999999999999999999988  5679999999999999999999999874

>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A

Probab=99.85  E-value=3.2e-21  Score=119.12  Aligned_cols=62  Identities=19%  Similarity=0.285  Sum_probs=58.8

Q ss_pred             cccceEECCCCCCHHHHHHHHHHHHHHHhhcCCce--eEeeEEEEEEEeecceEEEEEEEEeeCc
Q 045193           16 LVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEF--KFKSVEKGKTKVVSSTNYRLILVVKDGK   78 (82)
Q Consensus        16 ~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~--~~~~V~~~~~QVVaG~nY~l~v~~~~g~   78 (82)
                      ++|||+++ +++||+++++++||+.+||+++|+.+  ++.+|+++++|||+|+||+|++++++++
T Consensus         2 ~~Gg~~~~-~~~d~~v~~~~~~av~~~N~~s~~~~~~~l~~v~~a~~QvVaG~~y~l~v~v~~t~   65 (111)
T 1yvb_I            2 LLGAPVPV-DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIGRTT   65 (111)
T ss_dssp             CTTCEECC-CTTCHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCCEEEESSSEEEEEEEEEEEBS
T ss_pred             CCCCceEC-CCCCHHHHHHHHHHHHHHHHhCCCcceeEEEEEEEEEEEEECCeEEEEEEEEEccc
Confidence            68999999 89999999999999999999999887  7799999999999999999999999874

>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens}

Probab=99.85  E-value=6.1e-21  Score=121.96  Aligned_cols=70  Identities=20%  Similarity=0.266  Sum_probs=63.0

Q ss_pred             eeeeccCcccccceEECCCCCCHHHHHHHHHHHHHHHhhcCCce--eEeeEEEEEEEeecceEEEEEEEEeeC
Q 045193            7 LAADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEF--KFKSVEKGKTKVVSSTNYRLILVVKDG   77 (82)
Q Consensus         7 ~~~~~~~~~~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~--~~~~V~~~~~QVVaG~nY~l~v~~~~g   77 (82)
                      ++.......++|||+++ +++||+++++++||+.+||+++|+.+  ++.+|+++++|||+|+||+|+++++++
T Consensus         7 ~~~~~~~~~~~Gg~~~~-~~~d~ev~e~a~~Av~~~N~~sn~~~~~~l~~V~~a~~QVVaG~~Y~l~v~v~~t   78 (131)
T 2ch9_A            7 CSQDLNSRVKPGFPKTI-KTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRT   78 (131)
T ss_dssp             CCSCTTCSSCCCCCEEC-CTTCHHHHHHHHHHHHHHHHHSCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEE
T ss_pred             hHhHhhcccCCCCCeeC-CCCCHHHHHHHHHHHHHHHHhCCCCcceEEEEEEEeeeEecCCeEEEEEEEEEcc
Confidence            44555667789999999 79999999999999999999999987  559999999999999999999999874

>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A

Probab=99.84  E-value=5.5e-21  Score=120.27  Aligned_cols=65  Identities=23%  Similarity=0.314  Sum_probs=57.1

Q ss_pred             Ccc-cccceEECCCCCCHHHHHHHHHHHHHHHhh-cCCceeE--eeEEEEEEEeecceEEEEEEEEeeCc
Q 045193           13 KRV-LVGGWKSKEDLSEPHVTEIGRFAVMSTKKR-SKNEFKF--KSVEKGKTKVVSSTNYRLILVVKDGK   78 (82)
Q Consensus        13 ~~~-~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~-s~~~~~~--~~V~~~~~QVVaG~nY~l~v~~~~g~   78 (82)
                      +.. ++|||+++ +++||+++++++||+.+||++ +|+.+.|  .+|+++++|||+|+||+|++++++++
T Consensus         6 ~~~~~~Gg~~~~-~~~d~~v~~~a~~Av~~~N~~~s~~~~~~~l~~v~~a~~QVVaG~~Y~l~v~v~~t~   74 (122)
T 1roa_A            6 QSRTLAGGIHAT-DLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTT   74 (122)
T ss_dssp             ------CCEEEE-CTTSHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             ccCcCCCCCeEC-CCCCHHHHHHHHHHHHHHHhcccCCCceeEEEEEEEEEEEEECCeEEEEEEEEEccc
Confidence            345 89999999 899999999999999999999 9999866  99999999999999999999998864

>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima}

Probab=99.82  E-value=2.3e-20  Score=114.22  Aligned_cols=59  Identities=24%  Similarity=0.456  Sum_probs=55.6

Q ss_pred             cccccceEECCCCCCHHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEeecce-----EEEEEEEEeeCc
Q 045193           14 RVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSST-----NYRLILVVKDGK   78 (82)
Q Consensus        14 ~~~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QVVaG~-----nY~l~v~~~~g~   78 (82)
                      .+++|||+++ |++||++|++|+||+++||++   .+.|.+|+++  |||+|+     ||+|+|+++++.
T Consensus         3 ~~~~Gg~~~i-~~nd~~v~e~a~fAv~e~N~~---~l~~~~Vv~a--QVVaG~~~~~~~Y~L~l~~~~~~   66 (95)
T 2kxg_A            3 GPAIGEVIGI-SVNDPRVKEIAEFALKQHAEQ---NLILAGVDAG--QIIKGIPHWDNYYNLILSAKHSP   66 (95)
T ss_dssp             CCSSCCCCCC-CTTCHHHHHHHHHHHHHCCTT---CCEEEEEEEE--EEECSSCSSCCEEEEEEEEESCT
T ss_pred             CCCCCcceEC-CCCCHHHHHHHHHHHHHHHhh---CcEEEEEEEE--eEecCccccCccEEEEEEEecCC
Confidence            4689999999 999999999999999999987   7999999999  999999     999999999974

>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata}

Probab=99.81  E-value=5.2e-20  Score=115.47  Aligned_cols=60  Identities=28%  Similarity=0.555  Sum_probs=54.6

Q ss_pred             ccccceEECCCCCCHHHHHHHHHHHHHHHhhcCCce--eEeeEEEEEEEeecceEEEEEEEEeeC
Q 045193           15 VLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEF--KFKSVEKGKTKVVSSTNYRLILVVKDG   77 (82)
Q Consensus        15 ~~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~--~~~~V~~~~~QVVaG~nY~l~v~~~~g   77 (82)
                      .++|||+++ +++||+++++++||+.  |+++++.+  ++.+|+++++|||+|+||+|++++++.
T Consensus         2 ~~~GG~~~i-~~~d~~v~~~a~~Av~--N~~s~~~~~~~~~kV~~a~~QVVaG~~Y~i~v~v~~t   63 (115)
T 3l0r_A            2 SIPGGWTRQ-DPTEARFLELAHFATS--SQTEGREFYDTVVTVKEVETQVVAGMNYKLTIEISPS   63 (115)
T ss_dssp             -CCCSCEEE-CTTCHHHHHHHHHHHT--TCCTTCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEE
T ss_pred             CCcccceeC-CCCCHHHHHHHHHHHh--ccccCCCcceEEEEEEEEEEEEEeeEEEEEEEEEecc
Confidence            478999999 7899999999999999  88888887  569999999999999999999999864

>2bo9_B Human latexin, MUM; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: d.17.1.5 d.17.1.5 PDB: 1wnh_A

Probab=88.70  E-value=3.1  Score=28.36  Aligned_cols=53  Identities=11%  Similarity=0.145  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhcCCcee---EeeEEEEEEEeec--ceEEEEEEEEeeC
Q 045193           25 DLSEPHVTEIGRFAVMSTKKRSKNEFK---FKSVEKGKTKVVS--STNYRLILVVKDG   77 (82)
Q Consensus        25 ~~~d~~vq~~a~fAv~~~n~~s~~~~~---~~~V~~~~~QVVa--G~nY~l~v~~~~g   77 (82)
                      +++.-..+.+|+-|..=+|-..++...   +.+|.+|+.+.+.  |-+|.|++.+.+-
T Consensus         4 ~psh~~a~rAA~vA~hy~N~~~gSP~~l~~L~~V~~a~a~~ip~~G~Ky~l~Fs~e~~   61 (222)
T 2bo9_B            4 PPTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEI   61 (222)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEET
T ss_pred             CCcchHHHHHHHHHHHHhhcccCCCceeeehhhhhhhhhhhccCCCcEEEEEEEeeee
Confidence            456667788999888888877665443   4799999999874  7999999998774

>1kwi_A Protegrin-3 precursor; cathelicidin motif, disulfide, MAD, selenocystine, antimicrobial protein; 2.19A {Sus scrofa} SCOP: d.17.1.3 PDB: 1lxe_A 1n5h_A 1n5p_A 1pfp_A

Probab=84.98  E-value=3.1  Score=25.06  Aligned_cols=47  Identities=15%  Similarity=-0.014  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEe---e-cceEEEEEEEEee
Q 045193           29 PHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKV---V-SSTNYRLILVVKD   76 (82)
Q Consensus        29 ~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QV---V-aG~nY~l~v~~~~   76 (82)
                      .-++++..-||+.||+++.... +.+.++..-+-   . -++++.+.+.+.+
T Consensus         3 lsY~EAv~~Av~~~N~~S~~~n-lFRLl~~~p~p~~~~d~~~~~~v~FtIkE   53 (101)
T 1kwi_A            3 LSYREAVLRAVDRLNEQSSEAN-LYRLLELDQPPKADEDPGTPKPVSFTVKE   53 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSSE-EEEEEEEC---------CCCEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHHhcCCCccc-eeeeecccCCCccCCCCCCcceeEEEEee
Confidence            3578899999999999875443 34455444332   2 3566766666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	82
d1eqka_	102	d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza	2e-12
d1r4ca_	110	d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [Ta	1e-05
d1roaa_	111	d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [Ta	3e-05
d1cewi_	108	d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [T	1e-04

>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Phytocystatin
species: Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]

 Score = 55.3 bits (133), Expect = 2e-12
 Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 7  LAADNRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSST 66
          +++D     ++GG +   + ++ H+ ++ RFAV    K++ +  +F+ +   K +VV+ T
Sbjct: 1  MSSDGG--PVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGT 58

Query: 67 NYRLILVVKDG 77
           Y   + VK+G
Sbjct: 59 LYYFTIEVKEG 69

>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 1e-05
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 18 GGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFK--SVEKGKTKVVSSTNYRLILVVK 75
          GG      + E  V     FAV    K S + +  +   V + + ++V+  NY L + + 
Sbjct: 1  GGPMDA-SVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELG 59

Query: 76 DG 77
            
Sbjct: 60 RT 61

>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 3e-05
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 18 GGWKSKEDLSEPHVTEIGRFAVMSTKKRS---KNEFKFKSVEKGKTKVVSSTNYRLILVV 74
          GG  +  DL++  V     FA+    K     +   +   V     ++V   NY   +  
Sbjct: 1  GGIHAT-DLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKF 59

Query: 75 KDG 77
             
Sbjct: 60 GRT 62

>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.4 bits (81), Expect = 1e-04
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 18 GGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFK--SVEKGKTKVVSSTNYRLILVVK 75
          G      D ++  +    +FA+    + S +++  +   V   K ++VS   Y L + + 
Sbjct: 1  GAP-VPVDENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIG 59

Query: 76 DG 77
            
Sbjct: 60 RT 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1eqka_	102	Phytocystatin {Japanese rice (Oryza sativa), subsp	99.91
d1roaa_	111	Cystatin D {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1cewi_	108	Cystatin {Chicken (Gallus gallus) [TaxId: 9031]}	99.8
d1r4ca_	110	Cystatin C {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1stfi_	98	Cystatin B (stefin B) {Human (Homo sapiens) [TaxId	99.72
d1nb5i_	98	Cystatin A (stefin A) {Human (Homo sapiens) [TaxId	99.67
d1kwia_	98	Cathelicidin motif of protegrin-3 {Pig (Sus scrofa	99.0
d2o9ux1	96	Monellin, B & A chains together {Serendipity berry	95.16
d2bo9b1	98	Latexin {Human (Homo sapiens) [TaxId: 9606]}	94.9

>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Phytocystatin
species: Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]

Probab=99.91  E-value=1.2e-24  Score=132.97  Aligned_cols=68  Identities=25%  Similarity=0.459  Sum_probs=63.7

Q ss_pred             ccCcccccceEECCCCCCHHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEeecceEEEEEEEEeeCc
Q 045193           11 NRKRVLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGK   78 (82)
Q Consensus        11 ~~~~~~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QVVaG~nY~l~v~~~~g~   78 (82)
                      ....+++|||+|++|++||+++++++||+.+||+++++.|+|++|+++++|||+|+||+|++++.+++
T Consensus         3 ~~~~~l~GG~~~i~d~nd~~v~e~a~~Av~~~N~~~~~~~~~vkV~~a~~QVVaG~~Y~i~v~~~~~~   70 (102)
T d1eqka_           3 SDGGPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGD   70 (102)
T ss_dssp             CCSCSCSSSSEEECCTTCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEESSSEEEEEEEEEEETT
T ss_pred             cCCCcccCCcccCCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEEEeeeeccceeEEEEEEEccCC
Confidence            34567999999987899999999999999999999999999999999999999999999999999874

>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.6e-20  Score=114.38  Aligned_cols=59  Identities=22%  Similarity=0.284  Sum_probs=54.2

Q ss_pred             cceEECCCCCCHHHHHHHHHHHHHHHhhcCC-cee--EeeEEEEEEEeecceEEEEEEEEeeC
Q 045193           18 GGWKSKEDLSEPHVTEIGRFAVMSTKKRSKN-EFK--FKSVEKGKTKVVSSTNYRLILVVKDG   77 (82)
Q Consensus        18 Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~-~~~--~~~V~~~~~QVVaG~nY~l~v~~~~g   77 (82)
                      |||+++ |++||+++++++||+.+||+++|+ .+.  +.+|++|++|||+|++|+|++++++.
T Consensus         1 GG~~~~-~~~d~~v~~~~~~Av~~~N~~sn~~~~~~~l~~V~~a~~QVVaG~~Y~l~~~i~~T   62 (111)
T d1roaa_           1 GGIHAT-DLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRT   62 (111)
T ss_dssp             CCEEEE-CTTSHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             CCCccC-CCCCHHHHHHHHHHHHHHHHhcCCccceeEEEEEEEEEEEEecCcEEEEEEEEEec
Confidence            899999 899999999999999999999884 454  59999999999999999999999764

>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.80  E-value=1.1e-19  Score=110.78  Aligned_cols=58  Identities=19%  Similarity=0.246  Sum_probs=55.2

Q ss_pred             cceEECCCCCCHHHHHHHHHHHHHHHhhcCCceeE--eeEEEEEEEeecceEEEEEEEEee
Q 045193           18 GGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKF--KSVEKGKTKVVSSTNYRLILVVKD   76 (82)
Q Consensus        18 Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~~--~~V~~~~~QVVaG~nY~l~v~~~~   76 (82)
                      |||.++ |++||+++++++||+.+||+++++.+.|  .+|++|++|||+|++|+|++++++
T Consensus         1 Gg~~~~-~~~d~~v~~~~~~Av~~~N~~s~~~~~~~~~~V~~a~~QVVaG~~Y~l~~~i~~   60 (108)
T d1cewi_           1 GAPVPV-DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIGR   60 (108)
T ss_dssp             CCCEEC-CTTCHHHHHHHHHHTHHHHTTSCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred             CCCccC-CCCCHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEEEEEeecCcEEEEEEEEEe
Confidence            899999 8999999999999999999999998775  799999999999999999999976

>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.9e-19  Score=110.01  Aligned_cols=59  Identities=24%  Similarity=0.280  Sum_probs=55.9

Q ss_pred             cceEECCCCCCHHHHHHHHHHHHHHHhhcCCceeE--eeEEEEEEEeecceEEEEEEEEeeC
Q 045193           18 GGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKF--KSVEKGKTKVVSSTNYRLILVVKDG   77 (82)
Q Consensus        18 Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~~--~~V~~~~~QVVaG~nY~l~v~~~~g   77 (82)
                      |||.++ |++||+++++++||+.+||+++++.+.|  .+|++|++|||+|++|+|++++++.
T Consensus         1 Gg~~~~-~~~d~~v~~~~~~Av~~~N~~s~~~~~~~~~kV~~a~~QvVaG~~Y~l~~~i~~T   61 (110)
T d1r4ca_           1 GGPMDA-SVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRT   61 (110)
T ss_dssp             CCCEEC-CTTSHHHHHHHHHHHHHHHHHCCCSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred             CCCccC-CCCCHHHHHHHHHHHHHHHhhCCccceeEEEEEEEEEEEeccCCEEEEEEEEeec
Confidence            899999 8999999999999999999999998876  8999999999999999999999763

>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin B (stefin B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.9e-18  Score=103.90  Aligned_cols=63  Identities=17%  Similarity=0.212  Sum_probs=58.5

Q ss_pred             ccccceEECCCCCCHHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEeecceEEEEEEEEeeCc
Q 045193           15 VLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGK   78 (82)
Q Consensus        15 ~~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QVVaG~nY~l~v~~~~g~   78 (82)
                      .+||||++. .+.+|++|++++....+.+.++|..+...++++.++|||||+||+|++++++++
T Consensus         1 mm~GG~s~~-~~at~Eiq~i~d~Vk~~~e~k~~~k~~~f~av~yktQvVaG~NYfIKV~vg~~~   63 (98)
T d1stfi_           1 MMSGAPSAT-QPATAETQHIADQVRSQLEEKYNKKFPVFKAVSFKSQVVAGTNYFIKVHVGDED   63 (98)
T ss_dssp             CCBSCCCCC-EECCHHHHHHHHTTHHHHHHHHTCCCSCCEEEEEEEEESSEEEEEEEEECSSSC
T ss_pred             CcCCCCCCC-CCCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEEEEEEcceeEEEEEEeCCCc
Confidence            379999998 578999999999999999999999999999999999999999999999998763

>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin A (stefin A)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.3e-17  Score=98.60  Aligned_cols=63  Identities=22%  Similarity=0.315  Sum_probs=58.1

Q ss_pred             ccccceEECCCCCCHHHHHHHHHHHHHHHhhcCCceeEeeEEEEEEEeecceEEEEEEEEeeCc
Q 045193           15 VLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDGK   78 (82)
Q Consensus        15 ~~~Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~~~~V~~~~~QVVaG~nY~l~v~~~~g~   78 (82)
                      .+||||++. .+.+|++|++++....+.+.+.|..+.-++.++.++|||||+||+|+++++++.
T Consensus         1 mm~GG~s~~-~~at~Eiq~I~d~Vk~~le~k~g~~~~~F~av~yktQvVAGtNYfIKV~vG~~~   63 (98)
T d1nb5i_           1 MIPGGLSEA-KPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNK   63 (98)
T ss_dssp             CCTTSCCCC-EECCHHHHHHHHHHHHHHHHHHCCCCSCCEEEEEEEEESSEEEEEEEEECSSSC
T ss_pred             CccCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEEEEcceeEEEEEEeCCCc
Confidence            479999998 577999999999999999999999999999999999999999999999997763

>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cathelicidin motif
domain: Cathelicidin motif of protegrin-3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.00  E-value=3.2e-10  Score=67.16  Aligned_cols=48  Identities=15%  Similarity=0.029  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCcee--EeeEEEEEEEee-cceEEEEEEEEeeC
Q 045193           30 HVTEIGRFAVMSTKKRSKNEFK--FKSVEKGKTKVV-SSTNYRLILVVKDG   77 (82)
Q Consensus        30 ~vq~~a~fAv~~~n~~s~~~~~--~~~V~~~~~QVV-aG~nY~l~v~~~~g   77 (82)
                      .+++++++|+.+||+++++.+.  +.+|.+++.|+| +|++|+|++.+++.
T Consensus         3 sy~eav~~Al~~~N~~s~~~~~f~l~~v~~a~~q~v~~g~~y~l~f~i~eT   53 (98)
T d1kwia_           3 SYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKET   53 (98)
T ss_dssp             HHHHHHHHHHHHHHHHCCSSEEEEEEEEC---------CCCEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCCcccEEEEEEeecceeeecCCcEEEEEEEEEEe
Confidence            5899999999999999998765  489999999988 89999999999763

>d2o9ux1 d.17.1.1 (X:1001-1096) Monellin, B & A chains together {Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Monellin
domain: Monellin, B & A chains together
species: Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]

Probab=95.16  E-value=0.025  Score=31.56  Aligned_cols=57  Identities=26%  Similarity=0.522  Sum_probs=42.0

Q ss_pred             cceEECCCCCCHHHHHHHHHHHHHHHhhcC-CceeEeeEEEEEEE----------eecceEEEEEEEEee
Q 045193           18 GGWKSKEDLSEPHVTEIGRFAVMSTKKRSK-NEFKFKSVEKGKTK----------VVSSTNYRLILVVKD   76 (82)
Q Consensus        18 Gg~~~i~~~~d~~vq~~a~fAv~~~n~~s~-~~~~~~~V~~~~~Q----------VVaG~nY~l~v~~~~   76 (82)
                      |.|.-| |+ -|..|.+++|||++-|+-.. ..+.|.+|++--..          -..|..|.|-+-+++
T Consensus         1 geweii-di-gpftqnlgkfavdeenkigqygrltfnkvirpcmkktiyenegfreikgyeyqlyvyasd   68 (96)
T d2o9ux1           1 GEWEII-DI-GPFTQNLGKFAVDEENKIGQYGRLTFNKVIRPCMKKTIYENEGFREIKGYEYQLYVYASD   68 (96)
T ss_dssp             CCCEEE-CC-SHHHHHHHHHHHHHHHHHCTTCSCCEEEEEEEEEEEEEECSSSSCSEEEEEEEEEEEETT
T ss_pred             CCceEE-Ee-cchhhhhcceeecccccccccceeehhHHhHHHhhhhhhcccCceeccCcEEEEEEEecc
Confidence            678888 67 79999999999999998644 67888888864211          235777777766544

>d2bo9b1 d.17.1.5 (B:1-98) Latexin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Latexin-like
domain: Latexin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.12  Score=29.74  Aligned_cols=55  Identities=11%  Similarity=0.128  Sum_probs=43.2

Q ss_pred             ECCCCCCHHHHHHHHHHHHHHHhhcCCcee---EeeEEEEEEEeec--ceEEEEEEEEeeC
Q 045193           22 SKEDLSEPHVTEIGRFAVMSTKKRSKNEFK---FKSVEKGKTKVVS--STNYRLILVVKDG   77 (82)
Q Consensus        22 ~i~~~~d~~vq~~a~fAv~~~n~~s~~~~~---~~~V~~~~~QVVa--G~nY~l~v~~~~g   77 (82)
                      ++ +++.-..+.+|+-|..=+|-+.++..+   +.+|.+|..+++.  |-+|+|++.+.+-
T Consensus         2 ei-~psh~pA~rAA~vA~hy~N~~~GSP~rl~~L~~V~~a~~e~ip~~G~Ky~L~Fs~e~~   61 (98)
T d2bo9b1           2 EI-PPTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEI   61 (98)
T ss_dssp             BC-CTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEET
T ss_pred             CC-CCcchHHHHHHHHHHHHhhcccCCCceeeehhHHHhhhhhhccccCcEEEEEEEhhhc
Confidence            35 566777888999888888877665433   4799999999874  8999999998763