Citrus Sinensis ID: 045232

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
MNIIKLIVSAFSATLIVSSIIVVLVAVTTKHDDNVNWEAKKSPLRKAVNQLCAPTSFTDLCIETLNRANTSDPKELIKAMIIRSHEAIAKLHELADSMAKELANVNDTYDQRNDLGDCMEMLQLCMVDLQKTVDIIEANQLDTLSYQADEIMPKLNAVITFQKACLAGFKRKSRPQKENLTGPMQESRQLGSIALTTIYELPRHLHYFNMEERILPPGFLKPFQTGEVYKFPPWFSTANRELLAIPKEMLTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIYGDGNTKTFVVLHQPILERIGRSIENSATVSVMAEGFMAREIGIISNFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDATAIIQNSWILVRRPNRTTRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPLGPYATTAFRFLEYNNNGPSANTTNRVKWSGVKEIDKNEALAFTVSTLLDPRDQWM
ccccEEHHHHHHHHHHHHHHHHEEEEEEcccccccccccccccHHHHHHHccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHccccccccEEEEEEEEcEEEEEEEEEccccccEEEEEccccccEEEEccccccccccccccccEEEEEcccEEEEccEEEcccccccccEEEEEEcccEEEEEccEEEcccccEEcccccEEEEccEEEEEcEEEEcccEEEEEccEEEEEccccccccEEEEccccccccccEEEEEccEEEEcccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccHHHHHccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHccccccccccEEEEEccccccccHHHHHHHcccccccccEEEEEEEccEEEEEEEEccccEEEEEEEcEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEEEEEcccccccccccccccccEEEEcHHHHHHccHHHHHccccccc
MNIIKLIVSAFSATLIVSSIIVVLVAVTTkhddnvnweakkSPLRKAVnqlcaptsfTDLCIETLnrantsdpKELIKAMIIRSHEAIAKLHELADSMAKELANVndtydqrndLGDCMEMLQLCMVDLQKTVDIIEANqldtlsyqadeiMPKLNAVITFQKACLagfkrksrpqkenltgpmqesrqlGSIALTTIyelprhlhyfnmeerilppgflkpfqtgevykfppwfstaNRELLAipkemltpsavvaqdgtgqfYTIGSalhsypddikeGMIYAIYVKAGLYEEQVTINYYHRnvfiygdgntKTFVVLHQPILERigrsiensaTVSVMAEGFMAREIGiisnfgpdarrANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIIsgtrdfitgDATAIIQNSWilvrrpnrttrNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRtylgrplgpyatTAFRFLeynnngpsanttnrvkwsgvkeidkneaLAFTVStlldprdqwm
MNIIKLIVSAFSATLIVSSIIVVLVAVTTKHDDNVNWEAKKSPLRKAVNQLCAPTSFTDLCIETlnrantsdpkELIKAMIIRSHEAIAKLHELADSMAKELANVNDTYDQRNDLGDCMEMLQLCMVDLQKTVDIIEANQLDTLSYQADEIMPKLNAVITFQKACLAgfkrksrpqkenltgpmqesrqlGSIALTTIYELPRHLHYFNMEERILPPGFLKPFQTGEVYKFPPWFSTANRELLAIPKEMLTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIYGDGNTKTFVVLHQPILErigrsiensATVSVMAEGFMAREIGIISNFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDATAIIqnswilvrrpnrTTRNIVTahardlksqttafVLQKCVLLADKALWEDRYKFRTYLGRPLGPYATTAFRFLEYnnngpsanttnrVKWSGVkeidknealaftvstlldprdqwm
MNIIKLIVSAFsatlivssiivvlvavttKHDDNVNWEAKKSPLRKAVNQLCAPTSFTDLCIETLNRANTSDPKELIKAMIIRSHEAIAKLHELADSMAKELANVNDTYDQRNDLGDCMEMLQLCMVDLQKTVDIIEANQLDTLSYQADEIMPKLNAVITFQKACLAGFKRKSRPQKENLTGPMQESRQLGSIALTTIYELPRHLHYFNMEERILPPGFLKPFQTGEVYKFPPWFSTANRELLAIPKEMLTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIYGDGNTKTFVVLHQPILERIGRSIENSATVSVMAEGFMAREIGIISNFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDATAIIQNSWILVRRPNRTTRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPLGPYATTAFRFLEYNNNGPSANTTNRVKWSGVKEIDKNEALAFTVSTLLDPRDQWM
**IIKLIVSAFSATLIVSSIIVVLVAVTTKHDDNVNWEAKKSPLRKAVNQLCAPTSFTDLCIETLNRANTSDPKELIKAMIIRSHEAIAKLHELADSMAKELANVNDTYDQRNDLGDCMEMLQLCMVDLQKTVDIIEANQLDTLSYQADEIMPKLNAVITFQKACLAGF********************LGSIALTTIYELPRHLHYFNMEERILPPGFLKPFQTGEVYKFPPWFSTANRELLAIPKEMLTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIYGDGNTKTFVVLHQPILERIGRSIENSATVSVMAEGFMAREIGIISNFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDATAIIQNSWILVRRPNRTTRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPLGPYATTAFRFLEYNNNGPSANTTNRVKWSGVKEIDKNEALAFTVSTL********
***IKLIVSAFSATLIVSSIIVVLVA***********************QLCAPTSFTDLCI****************AMIIRSHEAIAKLHE*******************NDLGDCMEMLQLCMVDLQKTV**************ADEIMPKLNAVITFQKACLAGFKRK********************IALTTIYELP******************************PWFSTANRELLAIPKEMLTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIYGDGNTKTFVVLHQPILERIGRSIENSATVSVMAEGFMAREIGIISNFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDATAIIQNSWILVRRPNRTTRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPLGPYATTAFRFLEYNNNGPSANTTNRVKWSGVKEIDKNEALAFTVSTLLDPRDQWM
MNIIKLIVSAFSATLIVSSIIVVLVAVTTKHDDNVNWEAKKSPLRKAVNQLCAPTSFTDLCIETLNRANTSDPKELIKAMIIRSHEAIAKLHELADSMAKELANVNDTYDQRNDLGDCMEMLQLCMVDLQKTVDIIEANQLDTLSYQADEIMPKLNAVITFQKACLAGFKRKSRPQKENLTGPMQESRQLGSIALTTIYELPRHLHYFNMEERILPPGFLKPFQTGEVYKFPPWFSTANRELLAIPKEMLTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIYGDGNTKTFVVLHQPILERIGRSIENSATVSVMAEGFMAREIGIISNFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDATAIIQNSWILVRRPNRTTRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPLGPYATTAFRFLEYNNNGPSANTTNRVKWSGVKEIDKNEALAFTVSTLLDPRDQWM
*NIIKLIVSAFSATLIVSSIIVVLVAVTT*************PLRKAVNQLCAPTSFTDLCIETLNRANTSDPKELIKAMIIRSHEAIAKLHELADSMAKELANVNDTYDQRNDLGDCMEMLQLCMVDLQKTVDIIEANQLDTLSYQADEIMPKLNAVITFQKACLAGFKRKSRPQKENLTGPMQESRQLGSIALTTIYELPRHLHYFNME******************KFPPWFSTANRELLAIPKEMLTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIYGDGNTKTFVVLHQPILERIGRSIENSATVSVMAEGFMAREIGIISNFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDATAIIQNSWILVRRPNRTTRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPLGPYATTAFRFLEYNNNGPSANTTNRVKWSGVKEIDKNEALAFTVSTLLDPRD***
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNIIKLIVSAFSATLIVSSIIVVLVAVTTKHDDNVNWEAKKSPLRKAVNQLCAPTSFTDLCIETLNRANTSDPKELIKAMIIRSHEAIAKLHELADSMAKELANVNDTYDQRNDLGDCMEMLQLCMVDLQKTVDIIEANQLDTLSYQADEIMPKLNAVITFQKACLAGFKRKSRPQKENLTGPMQESRQLGSIALTTIYELPRHLHYFNMEERILPPGFLKPFQTGEVYKFPPWFSTANRELLAIPKEMLTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIYGDGNTKTFVVLHQPILERIGRSIENSATVSVMAEGFMAREIGIISNFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDATAIIQNSWILVRRPNRTTRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPLGPYATTAFRFLEYNNNGPSANTTNRVKWSGVKEIDKNEALAFTVSTLLDPRDQWM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query531 2.2.26 [Sep-21-2011]
Q3E8Z8 732 Putative pectinesterase/p yes no 0.939 0.681 0.290 1e-66
P41510584 Probable pectinesterase/p N/A no 0.979 0.890 0.306 7e-65
Q7Y201614 Probable pectinesterase/p no no 0.856 0.741 0.317 1e-63
Q9SMY6609 Putative pectinesterase/p no no 0.894 0.779 0.302 2e-63
Q42608571 Pectinesterase/pectineste N/A no 0.900 0.837 0.312 6e-63
Q8GX86 669 Probable pectinesterase/p no no 0.952 0.756 0.286 8e-63
Q9FJ21571 Probable pectinesterase/p no no 0.951 0.884 0.301 2e-62
O80722588 Pectinesterase 4 OS=Arabi no no 0.958 0.865 0.296 1e-60
Q5MFV8595 Pectinesterase 5 OS=Arabi no no 0.962 0.858 0.290 5e-60
Q5MFV6588 Probable pectinesterase/p no no 0.983 0.887 0.290 7e-60
>sp|Q3E8Z8|PME28_ARATH Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1 Back     alignment and function desciption
 Score =  254 bits (650), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 164/565 (29%), Positives = 273/565 (48%), Gaps = 66/565 (11%)

Query: 5   KLIVSAFSATLIVSSIIVVLVAVTTKHDDNVNWEAKKSPLRKAVNQLCAPTSFTDLCIET 64
           + ++ + S+ L++S ++ V + V+    DN   E   + + KA+  +CAPT + + C +T
Sbjct: 15  RYVIISISSVLLISMVVAVTIGVSVNKSDNAGDEEITTSV-KAIKDVCAPTDYKETCEDT 73

Query: 65  LNR--ANTSDPKELIKAMIIRSHEAIAKLHELADSMAKELANVNDTYDQRND--LGDCME 120
           L +   +TSDP EL+K          A + +++D   K    +    D R    L  C E
Sbjct: 74  LRKDAKDTSDPLELVKTAFN------ATMKQISDVAKKSQTMIELQKDPRAKMALDQCKE 127

Query: 121 MLQLCMVDLQKTVDIIEANQLDTLSYQADEIMPKL----NAVITFQKACLAGFKRKSRPQ 176
           ++   + +L K+ + +   +     ++ DE + KL    +A I+ ++ CL GF+      
Sbjct: 128 LMDYAIGELSKSFEELGKFEF----HKVDEALVKLRIWLSATISHEQTCLDGFQGTQGNA 183

Query: 177 KENLTGPMQESRQLGSIALTTIYELPRHLHYFNMEE----RILPPGFLKPFQTGEVYKFP 232
            E +   ++ + QL    L  + E+  +L    + E    R+L              +FP
Sbjct: 184 GETIKKALKTAVQLTHNGLAMVTEMSNYLGQMQIPEMNSRRLL------------SQEFP 231

Query: 233 PWFSTANRELLAIPKEMLTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGL 292
            W     R LL  P   + P  VVAQDG+GQ+ TI  AL+  P   K+   + +++K G+
Sbjct: 232 SWMDARARRLLNAPMSEVKPDIVVAQDGSGQYKTINEALNFVPK--KKNTTFVVHIKEGI 289

Query: 293 YEEQVTINYYHRNVFIYGDGNTKTFVVLHQPILERIGRSIENSATVSVMAEGFMAREIGI 352
           Y+E V +N    ++   GDG  KT +   +    + G +   +ATV+++ + F+A+ I  
Sbjct: 290 YKEYVQVNRSMTHLVFIGDGPDKTVISGSKSY--KDGITTYKTATVAIVGDHFIAKNIAF 347

Query: 353 ISNFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDA 412
            +  G    +A A+ V AD+++F +C+ DGYQ TL A ++RQFY +C ISGT DF+ GDA
Sbjct: 348 ENTAGAIKHQAVAIRVLADESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDA 407

Query: 413 TAIIQNSWILVRRPNRTTRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYL 472
            A+ QN  +LVR+P       +TAH R    ++T FVLQ C ++ +      + + +TYL
Sbjct: 408 AAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKEQSKTYL 467

Query: 473 GRP--------------------------LGPYATTAFRFLEYNNNGPSANTTNRVKWSG 506
           GRP                          LG +      + E  N GP A  T RV W G
Sbjct: 468 GRPWKEYSRTIIMNTFIPDFVPPEGWQPWLGEFGLNTLFYSEVQNTGPGAAITKRVTWPG 527

Query: 507 VKEIDKNEALAFTVSTLLDPRDQWM 531
           +K++   E L FT +  +   D W+
Sbjct: 528 IKKLSDEEILKFTPAQYIQ-GDAWI 551
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|P41510|PME_BRANA Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1 Back     alignment and function description
>sp|Q7Y201|PME13_ARATH Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=2 Back     alignment and function description
>sp|Q9SMY6|PME45_ARATH Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1 Back     alignment and function description
>sp|Q42608|PME_BRACM Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1 Back     alignment and function description
>sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2 Back     alignment and function description
>sp|Q9FJ21|PME58_ARATH Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1 Back     alignment and function description
>sp|O80722|PME4_ARATH Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1 Back     alignment and function description
>sp|Q5MFV8|PME5_ARATH Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2 Back     alignment and function description
>sp|Q5MFV6|PME37_ARATH Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
359479993566 PREDICTED: probable pectinesterase/pecti 0.962 0.902 0.371 8e-90
359480243565 PREDICTED: probable pectinesterase/pecti 0.962 0.904 0.365 7e-89
224070571560 predicted protein [Populus trichocarpa] 0.954 0.905 0.377 7e-89
147818957 1542 hypothetical protein VITISV_040170 [Viti 0.958 0.330 0.366 1e-87
449463555567 PREDICTED: putative pectinesterase/pecti 0.973 0.911 0.351 2e-87
225432177570 PREDICTED: putative pectinesterase/pecti 0.956 0.891 0.350 2e-85
297736811576 unnamed protein product [Vitis vinifera] 0.956 0.881 0.350 2e-85
224054290559 predicted protein [Populus trichocarpa] 0.907 0.862 0.364 2e-84
449463553560 PREDICTED: probable pectinesterase/pecti 0.911 0.864 0.355 4e-84
255575436557 Pectinesterase-4 precursor, putative [Ri 0.894 0.852 0.372 1e-82
>gi|359479993|ref|XP_003632385.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 207/557 (37%), Positives = 315/557 (56%), Gaps = 46/557 (8%)

Query: 3   IIKLIVSAFSATLIVSSIIVVLVAVTTKH-DDNVNWEAKKSPLRKAVNQLCAPTSFTDLC 61
           I K +VS  S  L+V  +I+ +V+VT  H  D  + +   S   KAV  +CA   + D C
Sbjct: 2   IGKAVVSGISLFLVVG-VIIGIVSVTRPHGSDRTDGDTNMSSSMKAVASVCATADYKDAC 60

Query: 62  IETLN----RANTSDPKELIKAMIIRSHEAIAKLHELADSMAKELANVNDTYDQRNDLGD 117
           ++TL+      +++ PK+ I+A +  + + I     L++ + +     ND+  Q   LGD
Sbjct: 61  MQTLSPVPKNGSSATPKDYIQAAVQVTIKQIKSSMNLSEKLFQA---TNDSRTQMA-LGD 116

Query: 118 CMEMLQLCMVDLQKTVDIIEANQLDTLSYQADEIMPKLNAVITFQKACLAGFKRKSRPQK 177
           C ++LQ  + +LQ++   +  + L TL   + EIM  L+A +++Q+ CL G   + R Q 
Sbjct: 117 CKDLLQFAIDELQESFSSVGESDLQTLDQLSTEIMNWLSAAVSYQQTCLDGVI-EPRFQA 175

Query: 178 ENLTGPMQESRQLGSIALTTIYELPRHLHYFNMEERILPPG--FLKPFQTGEVYKFPPWF 235
               G +  + QL S AL  + +L + L  FN+   + P     L   +      +P WF
Sbjct: 176 AMQKG-LLNATQLTSNALAIVSDLSQILTKFNVPLDLKPNSRRLLGEIEVLGHDGYPTWF 234

Query: 236 STANRELLAIPKE-MLTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYE 294
           S  +R+LLA+     LTP+A+VA+DG+G F TI +AL +YP ++K    Y IYVKAG+Y 
Sbjct: 235 SATDRKLLALQDNGRLTPNAIVAKDGSGHFTTIAAALAAYPKNLKGR--YVIYVKAGIYR 292

Query: 295 EQVTINYYHRNVFIYGDGNTKTFVVLHQPILERIGRSIENSATVSVMAEGFMAREIGIIS 354
           E +T+   H NV++YGDG  KT V   +    R G +   +AT S + +GF+AR +G ++
Sbjct: 293 EYITVTKDHVNVYMYGDGPRKTIVTGTK--CYRDGITTYKTATFSAIGKGFVARSMGFVN 350

Query: 355 NFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDATA 414
             GPD  +A AL V++D + F +CR+DGYQ TL  QA+RQFY NC+ISGT DFI GD+T 
Sbjct: 351 TAGPDGHQAVALRVQSDMSAFFNCRMDGYQDTLYVQAHRQFYRNCVISGTIDFIFGDSTT 410

Query: 415 IIQNSWILVRRPNRTTRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGR 474
           +IQNS I+VRRPN   +N VTA  +  K +TT  V+  C ++ ++ L+ DR+K  ++LGR
Sbjct: 411 VIQNSLIIVRRPNDKQQNTVTAQGKTEKRETTGLVIHDCRIVPEQKLFPDRFKIPSFLGR 470

Query: 475 PLGPYATT-------------------AFRFL-------EYNNNGPSANTTNRVKWSGVK 508
           P  PY+ T                   A +F+       EY N GP ANT +RV W G +
Sbjct: 471 PWKPYSKTIIMETTLGDFIQPAGWTPWAGKFVPNTLLYAEYGNLGPGANTHSRVTWKGYR 530

Query: 509 EID-KNEALAFTVSTLL 524
            I  +NEAL +TV++ +
Sbjct: 531 IIKTRNEALQYTVNSFI 547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359480243|ref|XP_002275819.2| PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224070571|ref|XP_002303172.1| predicted protein [Populus trichocarpa] gi|222840604|gb|EEE78151.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147818957|emb|CAN67129.1| hypothetical protein VITISV_040170 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463555|ref|XP_004149499.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 28-like [Cucumis sativus] gi|449511953|ref|XP_004164099.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 28-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225432177|ref|XP_002275000.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 28 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736811|emb|CBI26012.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224054290|ref|XP_002298186.1| predicted protein [Populus trichocarpa] gi|222845444|gb|EEE82991.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449463553|ref|XP_004149498.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Cucumis sativus] gi|449529419|ref|XP_004171697.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255575436|ref|XP_002528620.1| Pectinesterase-4 precursor, putative [Ricinus communis] gi|223531965|gb|EEF33778.1| Pectinesterase-4 precursor, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
TAIR|locus:2125959609 AT4G33230 [Arabidopsis thalian 0.813 0.709 0.309 3.3e-63
TAIR|locus:2041384588 VGDH1 [Arabidopsis thaliana (t 0.480 0.433 0.391 2.6e-61
TAIR|locus:2041364595 VGD1 "VANGUARD1" [Arabidopsis 0.468 0.418 0.389 1.1e-60
TAIR|locus:2066210614 AT2G26450 [Arabidopsis thalian 0.713 0.617 0.319 1.8e-60
TAIR|locus:2078057 669 AT3G05610 [Arabidopsis thalian 0.822 0.653 0.308 2e-59
TAIR|locus:2098013588 VGDH2 "VANGUARD 1 homolog 2" [ 0.425 0.384 0.427 6.6e-59
TAIR|locus:2083308568 AT3G06830 [Arabidopsis thalian 0.802 0.75 0.331 2.3e-58
TAIR|locus:2129865701 AT4G15980 [Arabidopsis thalian 0.487 0.369 0.372 5.3e-54
TAIR|locus:2143340 732 AT5G27870 [Arabidopsis thalian 0.785 0.569 0.316 4.9e-53
TAIR|locus:2197056587 PME2 "pectin methylesterase 2" 0.879 0.795 0.281 1.3e-51
TAIR|locus:2125959 AT4G33230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 552 (199.4 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 138/446 (30%), Positives = 235/446 (52%)

Query:    40 KKSPLRKAVNQLCAPTSFTDLCIETLNRANTSDPKELIKAMIIRSHEAIAKLHELADSMA 99
             K   + K +  LC  T +   C  TL      D  +     +++S  AI  +++  D + 
Sbjct:    87 KAGQVDKIIQTLCNSTLYKPTCQNTLKNETKKDTPQTDPRSLLKS--AIVAVNDDLDQVF 144

Query:   100 KELANVN-DTYDQRNDLGDCMEMLQLCMVDLQKTVDIIEANQLDTLSYQADEIMPKLNAV 158
             K + ++  +  D ++ +  C  ++     +L  ++  I  ++++  +    ++   L+AV
Sbjct:   145 KRVLSLKTENKDDKDAIAQCKLLVDEAKEELGTSMKRINDSEVNNFAKIVPDLDSWLSAV 204

Query:   159 ITFQKACLAGFKRKSRPQKENLTGPMQESRQLGSIALTTIYELPRHLHYF-NMEERILPP 217
             +++Q+ C+ GF+      K  +      S+ L S +L  I  L  +L     ++ R+L  
Sbjct:   205 MSYQETCVDGFEEGKL--KTEIRKNFNSSQVLTSNSLAMIKSLDGYLSSVPKVKTRLLLE 262

Query:   218 GFLKPFQTGEVYKFPPWFSTANRELL-AIPKEMLTPSAVVAQDGTGQFYTIGSALHSYPD 276
                   +T  +     W S   R +L A+  + L P+A VA+DG+G F TI +AL + P 
Sbjct:   263 ARSSAKETDHITS---WLSNKERRMLKAVDVKALKPNATVAKDGSGNFTTINAALKAMPA 319

Query:   277 DIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIYGDGNTKTFVVLHQPILERIGRSIENSA 336
                +G  Y IY+K G+Y+E V I+    NV + GDG+ KT V  ++   ++I   +  +A
Sbjct:   320 KY-QGR-YTIYIKHGIYDESVIIDKKKPNVTMVGDGSQKTIVTGNKSHAKKIRTFL--TA 375

Query:   337 TVSVMAEGFMAREIGIISNFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFY 396
             T     EGFMA+ +G  +  GP+  +A A+ V++D++VF++CR +GYQ TL A  +RQ+Y
Sbjct:   376 TFVAQGEGFMAQSMGFRNTAGPEGHQAVAIRVQSDRSVFLNCRFEGYQDTLYAYTHRQYY 435

Query:   397 LNCIISGTRDFITGDATAIIQNSWILVRRPNRTTRNIVTAHARDLKSQTTAFVLQKCVLL 456
              +C+I GT DFI GDA AI QN  I +R+     +N VTA  R  K QTT FV+  C + 
Sbjct:   436 RSCVIIGTVDFIFGDAAAIFQNCDIFIRKGLPGQKNTVTAQGRVDKFQTTGFVIHNCTVA 495

Query:   457 ADKALWEDRYKFRTYLGRPLGPYATT 482
              ++ L   + +F++YLGRP  P++ T
Sbjct:   496 PNEDLKPVKAQFKSYLGRPWKPHSRT 521
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0009860 "pollen tube growth" evidence=RCA
TAIR|locus:2041384 VGDH1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041364 VGD1 "VANGUARD1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066210 AT2G26450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078057 AT3G05610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098013 VGDH2 "VANGUARD 1 homolog 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083308 AT3G06830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129865 AT4G15980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143340 AT5G27870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197056 PME2 "pectin methylesterase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00030089
hypothetical protein (560 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-99
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 3e-93
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 4e-78
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-76
PLN02314586 PLN02314, PLN02314, pectinesterase 4e-76
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-75
PLN02197588 PLN02197, PLN02197, pectinesterase 5e-74
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 4e-68
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 2e-67
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 9e-64
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 3e-61
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 2e-59
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 3e-58
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 6e-57
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-56
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 9e-56
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-54
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 3e-53
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-52
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-52
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 2e-52
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 2e-42
PLN02432293 PLN02432, PLN02432, putative pectinesterase 1e-32
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 4e-31
PLN02497331 PLN02497, PLN02497, probable pectinesterase 4e-30
PLN02773317 PLN02773, PLN02773, pectinesterase 5e-29
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 2e-24
PLN02304379 PLN02304, PLN02304, probable pectinesterase 2e-23
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 2e-21
PLN02176340 PLN02176, PLN02176, putative pectinesterase 2e-19
PLN02634359 PLN02634, PLN02634, probable pectinesterase 5e-18
PLN02671359 PLN02671, PLN02671, pectinesterase 8e-18
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 2e-15
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 2e-15
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 1e-14
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 4e-09
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 1e-05
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  312 bits (801), Expect = 1e-99
 Identities = 175/571 (30%), Positives = 287/571 (50%), Gaps = 66/571 (11%)

Query: 5   KLIVSAFSATLIVSSIIVVLVAVTTKHDDN---------------VNWEAKKSPLRKAVN 49
           ++I+ A SA ++V+++   + A  +  + +               V  E+  S + K + 
Sbjct: 24  RIIIGAVSALVVVAAVAGGVFAYVSYENKSQNQSGNGNNSSKDSPVKSESPVSQVDKIIQ 83

Query: 50  QLCAPTSFTDLCIETLNRANTSD-----PKELIKAMIIRSHEAIAKLHELADSMAKELAN 104
            +C  T +   C  TL +    D     PK+L+K+ I   ++ + K+ +   S   E  +
Sbjct: 84  TVCNATLYKQTCENTLKKGTEKDPSLAQPKDLLKSAIKAVNDDLDKVLKKVLSFKFENPD 143

Query: 105 VNDTYDQRNDLGDCMEMLQLCMVDLQKTVDIIEANQLDTLSYQADEIMPKLNAVITFQKA 164
             D  +      DC  +++    +L+ ++  I  ++++ L+    ++   L+AV+++Q+ 
Sbjct: 144 EKDAIE------DCKLLVEDAKEELKASISRI-NDEVNKLAKNVPDLNNWLSAVMSYQET 196

Query: 165 CLAGFKRKSRPQKENLTGPMQESRQLGSIALTTIYELPRHLHYFN----MEERILPPGFL 220
           C+ GF       K  +    + S++L S +L  +  L   L  F+    +   +L     
Sbjct: 197 CIDGFPEG--KLKSEMEKTFKSSQELTSNSLAMVSSLTSFLSSFSVPKVLNRHLLAKESN 254

Query: 221 KPFQTGEVYKFPPWFSTANRELL-AIPKEMLTPSAVVAQDGTGQFYTIGSALHSYPDDIK 279
            P    +    P W S  +R +L A+  + L P+A VA+DG+G F TI  AL + P    
Sbjct: 255 SPSLEKD--GIPSWMSNEDRRMLKAVDVDALKPNATVAKDGSGNFTTISDALAAMPAKY- 311

Query: 280 EGMIYAIYVKAGLYEEQVTINYYHRNVFIYGDGNTKTFVVLHQPILERIGRSIENSATVS 339
           EG  Y IYVK G+Y+E VT++    NV +YGDG+ KT V  ++   + + R+   +AT  
Sbjct: 312 EGR-YVIYVKQGIYDETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGV-RTFR-TATFV 368

Query: 340 VMAEGFMAREIGIISNFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNC 399
            + EGFMA+ +G  +  GP+  +A A+ V++D+++F++CR +GYQ TL AQ +RQFY +C
Sbjct: 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSC 428

Query: 400 IISGTRDFITGDATAIIQNSWILVRRPNRTTRNIVTAHARDLKSQTTAFVLQKCVLLADK 459
           +I+GT DFI GDA AI QN  I VR+P    +N VTA  R  K +TT  VLQ C +  D+
Sbjct: 429 VITGTIDFIFGDAAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDE 488

Query: 460 ALWEDRYKFRTYLGRPLGPYATT--------------------------AFRFLEYNNNG 493
            L   + + ++YLGRP   ++ T                             + EYNN G
Sbjct: 489 DLKPVKTEVKSYLGRPWKEFSRTIVMESTIEDVIDPVGWLRWEGDFALDTLYYAEYNNKG 548

Query: 494 PSANTTNRVKWSGVKEIDKNEALAFTVSTLL 524
           P   TT RVKW G   I+K EA+ +TV   L
Sbjct: 549 PGGATTARVKWPGYHVINKEEAMKYTVGPFL 579

Length = 596
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 531
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02176340 putative pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02634359 probable pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.94
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.93
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.91
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.38
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.79
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.59
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.39
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.22
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.79
KOG1777 625 consensus Putative Zn-finger protein [General func 97.06
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.72
PLN02793443 Probable polygalacturonase 96.69
PLN03003 456 Probable polygalacturonase At3g15720 96.6
PLN02218431 polygalacturonase ADPG 96.43
PLN02671359 pectinesterase 96.41
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.37
PLN03010409 polygalacturonase 96.22
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.91
PLN02634359 probable pectinesterase 95.73
PLN02480343 Probable pectinesterase 95.73
PLN02773317 pectinesterase 95.56
smart00656190 Amb_all Amb_all domain. 95.35
PLN02155394 polygalacturonase 95.35
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.15
PLN02176340 putative pectinesterase 94.83
PLN02682369 pectinesterase family protein 94.11
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 93.87
PLN02304379 probable pectinesterase 93.74
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 93.72
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 93.56
PLN02432293 putative pectinesterase 93.37
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 93.2
PLN02497331 probable pectinesterase 93.15
PLN02170529 probable pectinesterase/pectinesterase inhibitor 93.12
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 93.09
PLN02665366 pectinesterase family protein 93.08
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.07
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 92.95
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 92.88
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 92.78
PLN02197588 pectinesterase 92.68
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 92.62
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 92.3
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.27
PLN02916502 pectinesterase family protein 91.79
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 91.71
PLN02313587 Pectinesterase/pectinesterase inhibitor 91.69
PLN02506537 putative pectinesterase/pectinesterase inhibitor 91.62
PLN02416541 probable pectinesterase/pectinesterase inhibitor 91.45
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 91.36
PRK10531422 acyl-CoA thioesterase; Provisional 91.34
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 91.33
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 90.83
PLN02484587 probable pectinesterase/pectinesterase inhibitor 90.74
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 90.6
PLN02201520 probable pectinesterase/pectinesterase inhibitor 90.33
smart00722146 CASH Domain present in carbohydrate binding protei 88.56
PLN02301548 pectinesterase/pectinesterase inhibitor 88.48
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 87.86
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 87.72
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 86.67
PLN02314586 pectinesterase 86.55
PLN02188404 polygalacturonase/glycoside hydrolase family prote 85.2
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 84.25
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 81.05
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=5.4e-129  Score=1059.33  Aligned_cols=511  Identities=31%  Similarity=0.554  Sum_probs=459.3

Q ss_pred             CcceeehhHHHHHHHHHHhheeeEEeeccCCCCCCcccCCCchhHHHhccCCCCCChhcHHHhhhcc--CCCCHHHHHHH
Q 045232            2 NIIKLIVSAFSATLIVSSIIVVLVAVTTKHDDNVNWEAKKSPLRKAVNQLCAPTSFTDLCIETLNRA--NTSDPKELIKA   79 (531)
Q Consensus         2 ~~~~~~~~~~s~~llv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~C~~T~yp~lC~~sL~~~--~~~dp~~L~~~   79 (531)
                      ++||++|++|+++|||++||++++.+..+.+++++ .+...++++.|+.+|+.|+||++|+++|+++  ...+|++|+++
T Consensus        11 ~~~~~~~~~~~~~llv~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~Ikt~C~sT~YP~lC~sSLs~~~~~~~~p~dLi~a   89 (670)
T PLN02217         11 RKKRYVIISISSVLLISMVVAVTIGVSVNKSDNEG-KGEITTSVKAIKDVCAPTDYKETCEDTLRKDAKNTSDPLELVKT   89 (670)
T ss_pred             ccceeehHHHHHHHHHHHHHheeEEEeccccCCCC-ccccchHHHHHHHHhcCCCCcHHHHHHhhhhcccCCCHHHHHHH
Confidence            46799999999999999999999888755433222 2234466779999999999999999999986  35689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCccchhHHHHHHH
Q 045232           80 MIIRSHEAIAKLHELADSMAKELANVNDTYDQRNDLGDCMEMLQLCMVDLQKTVDIIEANQLDTLSYQADEIMPKLNAVI  159 (531)
Q Consensus        80 al~~a~~~a~~a~~~~~~ll~~~~~~~~~~~~~~aL~dC~e~y~davd~L~~s~~~l~~~~~~~~~~~~~dv~twLSAAl  159 (531)
                      +|+++++++.++...+.++.. ..   .+++++.||+||+|+|++++|+|++++++|...+...+...++|++|||||||
T Consensus        90 aL~vTl~a~~~a~~~~s~L~~-~~---~~~r~k~AL~DClELlddAvDeL~~Sl~~L~~~~~~~~~~~~dDvqTWLSAAL  165 (670)
T PLN02217         90 AFNATMKQISDVAKKSQTMIE-LQ---KDPRTKMALDQCKELMDYAIGELSKSFEELGKFEFHKVDEALIKLRIWLSATI  165 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-hc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHH
Confidence            999999999999999888743 23   37899999999999999999999999999985444444556799999999999


Q ss_pred             hhHHHHhhhhcCC-CCcccccccccchhhhHHHHHHHHHhhcccccccccccccccCCCCCCCCCcCCCcCCCCCCcccc
Q 045232          160 TFQKACLAGFKRK-SRPQKENLTGPMQESRQLGSIALTTIYELPRHLHYFNMEERILPPGFLKPFQTGEVYKFPPWFSTA  238 (531)
Q Consensus       160 t~~~TC~DgF~e~-~~~~~~~l~~~~~~~~~L~SnaLAiv~~l~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~p~w~~~~  238 (531)
                      |||+||+|||++. +.+ +..|...+.++.+|+||+|||++.+...+.++.++..  ..|  ++++ +   +||.|++..
T Consensus       166 TnQdTClDGF~~~~~~v-k~~m~~~l~nvseLtSNALAmv~~lss~~~~~~~~~~--~~r--~l~~-~---~~P~W~~~~  236 (670)
T PLN02217        166 SHEQTCLDGFQGTQGNA-GETIKKALKTAVQLTHNGLAMVSEMSNYLGQMQIPEM--NSR--RLLS-Q---EFPSWMDQR  236 (670)
T ss_pred             hchhHHHHhhhhhchHH-HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCc--ccc--cccc-c---CCCCCCChh
Confidence            9999999999764 356 7788899999999999999999998876665444221  257  7776 3   799999999


Q ss_pred             ccccccCCCCCCCCcEEEcCCCCCCCCcHHHHHhhCcCCCCCccEEEEEEecceeeeeEEEecccCCeEEeecCCCCeEE
Q 045232          239 NRELLAIPKEMLTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIYGDGNTKTFV  318 (531)
Q Consensus       239 ~~~~l~~~~~~~~~~~~V~~dg~g~f~TIq~Ai~aa~~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~Itl~G~g~~~tiI  318 (531)
                      +||||+.+...++++++|++||+|+|+|||+||+++|+++++  |++|+|++|+|+|+|.|+++|++|+|+|+|+++|||
T Consensus       237 dRrlL~~~~~~~~~~~vVa~dGsG~f~TIq~Av~a~P~~~~~--r~vI~Ik~GvY~E~V~I~~~k~~i~l~Gdg~~~TiI  314 (670)
T PLN02217        237 ARRLLNAPMSEVKPDIVVAQDGSGQYKTINEALNFVPKKKNT--TFVVHIKAGIYKEYVQVNRSMTHLVFIGDGPDKTVI  314 (670)
T ss_pred             hhhhhcCCcccCCccEEECCCCCCCccCHHHHHHhccccCCc--eEEEEEeCCceEEEEEEcCCCCcEEEEecCCCCeEE
Confidence            999998765567899999999999999999999999998877  999999999999999999999999999999999999


Q ss_pred             EecccccccCCccccceeEEEEecCcEEEEEEEEeecCCCCCCceeEEEeecCeEEEEeceecccccEEEecccceeEee
Q 045232          319 VLHQPILERIGRSIENSATVSVMAEGFMAREIGIISNFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLN  398 (531)
Q Consensus       319 ~~~~~~~~~~g~~t~~sat~~v~~~~~~~~~lt~~N~~~~~~~qAvAl~~~~d~~~~~nc~~~g~QDTl~~~~gr~~f~~  398 (531)
                      +|+.+.. + |++|++++||.|.|++|+++||||+|++|+.++|||||++.+|+++||||+|+|||||||++.+||||++
T Consensus       315 t~~~~~~-d-g~~T~~SAT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~  392 (670)
T PLN02217        315 SGSKSYK-D-GITTYKTATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRD  392 (670)
T ss_pred             EcCCccC-C-CCCccceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEe
Confidence            9998765 6 8899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeeceeeeecCceeEEEeeEEEEecCCCCCceEEEeccccCCCCceeEEEEccEEcccCCccccccccceeeccCCCC
Q 045232          399 CIISGTRDFITGDATAIIQNSWILVRRPNRTTRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPLGP  478 (531)
Q Consensus       399 c~I~G~vDfIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~  478 (531)
                      |||+|+||||||+|.++||+|+|+++++..++.|+||||+|.++.+++||||+||+|++++++.+.+...++||||||++
T Consensus       393 C~I~GtVDFIFG~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~  472 (670)
T PLN02217        393 CTISGTIDFLFGDAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKE  472 (670)
T ss_pred             CEEEEeccEEecCceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCccccccccccceeeccCCCC
Confidence            99999999999999999999999999887778899999999999999999999999999987655555678999999999


Q ss_pred             CCeee--------------------------eeeeeecccCCCCCCCCcccCCCcccCCHHHHhcCcccccccCCCCCC
Q 045232          479 YATTA--------------------------FRFLEYNNNGPSANTTNRVKWSGVKEIDKNEALAFTVSTLLDPRDQWM  531 (531)
Q Consensus       479 ~s~~v--------------------------~~f~Ey~~~Gpga~~s~R~~~~~~~~l~~~~a~~yt~~~~~~g~~~W~  531 (531)
                      |+|||                          +||+||+|+|||+++++||+|+|+++|+.+||.+||+++||+| ++||
T Consensus       473 ysrvVf~~t~l~~~I~P~GW~~W~~~~~~~t~~yaEY~n~GpGa~~s~Rv~W~g~~~lt~~eA~~ft~~~fi~g-~~Wl  550 (670)
T PLN02217        473 YSRTIIMNTFIPDFVPPEGWQPWLGDFGLNTLFYSEVQNTGPGAAITKRVTWPGIKKLSDEEILKFTPAQYIQG-DAWI  550 (670)
T ss_pred             CceEEEEecccCCeEcCcccCccCCCCCCCceEEEEeccccCCCCcCCCccccCcccCCHHHHHHhhHHhccCC-CCCC
Confidence            99999                          8999999999999999999999999999999999999999999 9997

>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 4e-43
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 3e-42
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 1e-11
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 1e-11
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 1e-11
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 2e-09
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  172 bits (436), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 157/302 (51%), Gaps = 31/302 (10%)
Query: 250 LTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIY 309
           +  +AVVAQDGTG + T+  A+ + PD  K    Y IYVK G Y+E V +     N+ I 
Sbjct: 1   IIANAVVAQDGTGDYQTLAEAVAAAPD--KSKTRYVIYVKRGTYKENVEVASNKMNLMIV 58
Query: 310 GDGNTKTFVVLHQPILERIGRSIENSATVSVMAEGFMAREIGIISNFGPDARRANALYVR 369
           GDG   T +     +++  G +   SAT++ + +GF+ ++I I +  GP   +A AL V 
Sbjct: 59  GDGMYATTITGSLNVVD--GSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVG 116
Query: 370 ADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDATAIIQNSWILVRRPNRT 429
           AD +V   CRID YQ TL A + RQFY +  ++GT DFI G+A  + Q   ++ R+P + 
Sbjct: 117 ADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKY 176
Query: 430 TRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPL------------- 476
            +N+VTA  R   +Q T   +Q C ++A   L     +F TYLGRP              
Sbjct: 177 QQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYL 236
Query: 477 -------------GPYATTAFRFLEYNNNGPSANTTNRVKWSGVKEI-DKNEALAFTVST 522
                        G +A     + E+ NNGP A T+ RVKW G   I D  +A+ FTV+ 
Sbjct: 237 GGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAK 296
Query: 523 LL 524
           L+
Sbjct: 297 LI 298
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 4e-94
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 6e-93
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 4e-71
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 2e-70
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 3e-59
1x91_A153 Invertase/pectin methylesterase inhibitor family p 4e-18
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 3e-17
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 8e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  288 bits (740), Expect = 4e-94
 Identities = 103/307 (33%), Positives = 148/307 (48%), Gaps = 32/307 (10%)

Query: 251 TPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIYG 310
            P+ VVA DG+G + T+  A+ + P+D K    Y I +KAG+Y E V +    +N+   G
Sbjct: 6   GPNVVVAADGSGDYKTVSEAVAAAPEDSKTR--YVIRIKAGVYRENVDVPKKKKNIMFLG 63

Query: 311 DGNTKTFVVLHQPILERIGRSIENSATVSVMAEGFMAREIGIISNFGPDARRANALYVRA 370
           DG T T +   + + +  G +  NSATV+ +  GF+AR+I   +  G    +A AL V +
Sbjct: 64  DGRTSTIITASKNVQD--GSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGS 121

Query: 371 DKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDATAIIQNSWILVRRPNRTT 430
           D + F  C I  YQ +L   + RQF++NC I+GT DFI G+A  ++Q+  I  RRP    
Sbjct: 122 DLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQ 181

Query: 431 RNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPLGPYATTAF------ 484
           +N+VTA  R   +Q T  V+QK  + A   L   +  F TYLGRP   Y+ T        
Sbjct: 182 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSIT 241

Query: 485 --------------------RFLEYNNNGPSANTTNRVKWSGV-KEIDKNEALAFTVSTL 523
                                + EY N G  A T+ RV W G        EA  FT  + 
Sbjct: 242 NVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSF 301

Query: 524 LDPRDQW 530
           +     W
Sbjct: 302 IA-GGSW 307
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.96
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.96
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.95
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.53
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.42
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.83
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.19
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.02
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.95
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.54
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.48
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.47
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.43
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.38
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.25
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.23
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.21
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.21
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.19
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.19
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.18
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.09
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.67
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.63
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.43
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.3
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.28
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.04
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 95.91
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.65
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 95.55
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.07
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.94
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 94.79
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 94.6
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 94.57
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 94.43
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 94.17
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 93.92
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 93.78
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 89.63
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 89.34
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 89.33
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 88.47
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 88.27
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 87.05
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 85.76
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 85.69
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 84.91
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 84.64
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 82.74
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 81.21
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=1.1e-79  Score=628.85  Aligned_cols=276  Identities=39%  Similarity=0.642  Sum_probs=260.2

Q ss_pred             CCcEEEcCCCCCCCCcHHHHHhhCcCCCCCccEEEEEEecceeeeeEEEecccCCeEEeecCCCCeEEEecccccccCCc
Q 045232          251 TPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIYGDGNTKTFVVLHQPILERIGR  330 (531)
Q Consensus       251 ~~~~~V~~dg~g~f~TIq~Ai~aa~~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~Itl~G~g~~~tiI~~~~~~~~~~g~  330 (531)
                      +++++|++||+|+|+|||+||+++|+++++  |++|+|+||+|+|+|.|++.|++|||+|+++++|+|+++.+.. + |.
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~~~~--~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~-~-g~   77 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDKSKT--RYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVV-D-GS   77 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSS--CEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTT-T-TC
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccCCCc--eEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEeccccc-C-CC
Confidence            578999999999999999999999999877  9999999999999999999899999999999999999998755 5 78


Q ss_pred             cccceeEEEEecCcEEEEEEEEeecCCCCCCceeEEEeecCeEEEEeceecccccEEEecccceeEeecEEeeceeeeec
Q 045232          331 SIENSATVSVMAEGFMAREIGIISNFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITG  410 (531)
Q Consensus       331 ~t~~sat~~v~~~~~~~~~lt~~N~~~~~~~qAvAl~~~~d~~~~~nc~~~g~QDTl~~~~gr~~f~~c~I~G~vDfIfG  410 (531)
                      +|+.++||.|.+++|+++||||+|++++.++||+||++.+|+++|+||+|+|||||||++++||||++|+|+|+||||||
T Consensus        78 ~t~~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG  157 (317)
T 1xg2_A           78 TTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFG  157 (317)
T ss_dssp             CSGGGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEE
T ss_pred             cccceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcC
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEeeEEEEecCCCCCceEEEeccccCCCCceeEEEEccEEcccCCccccccccceeeccCCCCCCeee-------
Q 045232          411 DATAIIQNSWILVRRPNRTTRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPLGPYATTA-------  483 (531)
Q Consensus       411 ~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~~v-------  483 (531)
                      +|.++||+|+|+++.+..++.++||||+|+++.+++||||+||+|++++++.++....++||||||++|+|+|       
T Consensus       158 ~~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~  237 (317)
T 1xg2_A          158 NAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLG  237 (317)
T ss_dssp             CCEEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEEC
T ss_pred             CceEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccC
Confidence            9999999999999987767889999999999999999999999999998765544456899999999999999       


Q ss_pred             -------------------eeeeeecccCCCCCCCCcccCCCcccC-CHHHHhcCcccccccCCCCCC
Q 045232          484 -------------------FRFLEYNNNGPSANTTNRVKWSGVKEI-DKNEALAFTVSTLLDPRDQWM  531 (531)
Q Consensus       484 -------------------~~f~Ey~~~Gpga~~s~R~~~~~~~~l-~~~~a~~yt~~~~~~g~~~W~  531 (531)
                                         ++|+||+|+|||+++++||+|+++|+| +++||.+|++.+||+| ++||
T Consensus       238 ~~I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g-~~W~  304 (317)
T 1xg2_A          238 GLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQG-GSWL  304 (317)
T ss_dssp             TTBCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCT-HHHH
T ss_pred             CcccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCC-CCCc
Confidence                               899999999999999999999988776 5799999999999999 7895
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 531
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 8e-80
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 8e-50
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 7e-17
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 5e-12
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  250 bits (640), Expect = 8e-80
 Identities = 105/308 (34%), Positives = 151/308 (49%), Gaps = 32/308 (10%)

Query: 250 LTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIY 309
           + P+ VVA DG+G + T+  A+ + P+D K    Y I +KAG+Y E V +    +N+   
Sbjct: 5   VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTR--YVIRIKAGVYRENVDVPKKKKNIMFL 62

Query: 310 GDGNTKTFVVLHQPILERIGRSIENSATVSVMAEGFMAREIGIISNFGPDARRANALYVR 369
           GDG T T +   + + +  G +  NSATV+ +  GF+AR+I   +  G    +A AL V 
Sbjct: 63  GDGRTSTIITASKNVQD--GSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVG 120

Query: 370 ADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFITGDATAIIQNSWILVRRPNRT 429
           +D + F  C I  YQ +L   + RQF++NC I+GT DFI G+A  ++Q+  I  RRP   
Sbjct: 121 SDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSG 180

Query: 430 TRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPLGPYATTAF----- 484
            +N+VTA  R   +Q T  V+QK  + A   L   +  F TYLGRP   Y+ T       
Sbjct: 181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI 240

Query: 485 ---------------------RFLEYNNNGPSANTTNRVKWSGVKEI-DKNEALAFTVST 522
                                 + EY N G  A T+ RV W G K I    EA  FT  +
Sbjct: 241 TNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGS 300

Query: 523 LLDPRDQW 530
            +     W
Sbjct: 301 FIA-GGSW 307
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.95
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.94
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.92
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.57
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.1
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.28
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.02
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 96.84
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.77
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 96.75
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 96.45
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.91
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.88
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.52
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.15
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 94.85
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.36
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 93.3
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 92.28
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 92.25
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 87.14
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 84.65
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 84.37
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=8.6e-84  Score=654.47  Aligned_cols=278  Identities=37%  Similarity=0.632  Sum_probs=264.5

Q ss_pred             CCCCcEEEcCCCCCCCCcHHHHHhhCcCCCCCccEEEEEEecceeeeeEEEecccCCeEEeecCCCCeEEEecccccccC
Q 045232          249 MLTPSAVVAQDGTGQFYTIGSALHSYPDDIKEGMIYAIYVKAGLYEEQVTINYYHRNVFIYGDGNTKTFVVLHQPILERI  328 (531)
Q Consensus       249 ~~~~~~~V~~dg~g~f~TIq~Ai~aa~~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~Itl~G~g~~~tiI~~~~~~~~~~  328 (531)
                      ..+++++|++||+|||+|||+||+++|.+++.  |++|+|+||+|+|+|.|+++||+|||+|+|++.|+|+++.+.. + 
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~--~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~-~-   79 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPEDSKT--RYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQ-D-   79 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSSCSS--CEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTT-T-
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccCCCC--cEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEeccccc-C-
Confidence            46789999999999999999999999998877  9999999999999999999999999999999999999998765 5 


Q ss_pred             CccccceeEEEEecCcEEEEEEEEeecCCCCCCceeEEEeecCeEEEEeceecccccEEEecccceeEeecEEeeceeee
Q 045232          329 GRSIENSATVSVMAEGFMAREIGIISNFGPDARRANALYVRADKAVFVDCRIDGYQRTLVAQAYRQFYLNCIISGTRDFI  408 (531)
Q Consensus       329 g~~t~~sat~~v~~~~~~~~~lt~~N~~~~~~~qAvAl~~~~d~~~~~nc~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI  408 (531)
                      +.+|+.++||.|.+++|+++||||+|++++.++|||||++.+||++|+||+|+|||||||+++|||||++|+|+|+||||
T Consensus        80 ~~~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFI  159 (319)
T d1gq8a_          80 GSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFI  159 (319)
T ss_dssp             TCCTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCE
T ss_pred             CCccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEE
Confidence            77899999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             ecCceeEEEeeEEEEecCCCCCceEEEeccccCCCCceeEEEEccEEcccCCccccccccceeeccCCCCCCeee-----
Q 045232          409 TGDATAIIQNSWILVRRPNRTTRNIVTAHARDLKSQTTAFVLQKCVLLADKALWEDRYKFRTYLGRPLGPYATTA-----  483 (531)
Q Consensus       409 fG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~~v-----  483 (531)
                      ||+|.++||+|+|+++.+..++.|+||||+|+++.+++||||++|+|+++++..+.....++||||||++|++||     
T Consensus       160 fG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~  239 (319)
T d1gq8a_         160 FGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSS  239 (319)
T ss_dssp             EESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCE
T ss_pred             ecCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecc
Confidence            999999999999999988778889999999999999999999999999999876655667899999999999999     


Q ss_pred             ---------------------eeeeeecccCCCCCCCCcccCCCcc-cCCHHHHhcCcccccccCCCCCC
Q 045232          484 ---------------------FRFLEYNNNGPSANTTNRVKWSGVK-EIDKNEALAFTVSTLLDPRDQWM  531 (531)
Q Consensus       484 ---------------------~~f~Ey~~~Gpga~~s~R~~~~~~~-~l~~~~a~~yt~~~~~~g~~~W~  531 (531)
                                           ++|+||+|+|||+++++||+|++++ +|+++||++|+.++||+| ++||
T Consensus       240 l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G-~~Wl  308 (319)
T d1gq8a_         240 ITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAG-GSWL  308 (319)
T ss_dssp             ECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCG-GGTS
T ss_pred             cccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCC-Cccc
Confidence                                 8999999999999999999999875 799999999999999999 8897
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure