Citrus Sinensis ID: 045340

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MDNNYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKISCIFLSGFCPILAFLGPGCFERCRLIPKHAVQDLI
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHcccccccccccHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHcccHHHHHcccccHHHHHccccEEEcccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHccEHHEHccccHHHHHcccccHHHcccccHHHHHHcc
Coil and Loop (DISEMBL)
mdnnysrwkskgvrdcdhsstsdgtsedmvefgkgksnDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRiennfmpeeeeaarndstkisCIFLsgfcpilaflgpgcfercrliPKHAVQDLI
Flexible Loop (DISEMBL)
mdnnysrwkskgvrdcdhsstsdgtsedmveFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFriennfmpeeeEAARNDSTKISCIFLSGFCPILAFLGPGCFERCRLIPKHAVQDLI
Low Complexity Region (SEG)
MDNNYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKISCIFLSGFCPILAFLGPGCFERCRLIPKHAVQDLI
Disordered region (IsUnstruct)
*****************************************KEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFM***********TKISCIFLSGFCPILAFLGPGCFERCRLIPKHA*****
Disordered Region (DISOPRED)
MDNNYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKISCIFLSGFCPILAFLGPGCFERCRLIPKHAVQDLI
Disordered Region (DISEMBL)
****************************MVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKISCIFLSGFCPILAFLGPGCFERCRLIPKHAVQDLI
Disordered Region (DISPRO)
*****SRWKSKGV**CDH*STSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKISCIFLSGFCPILAFLGPGCFERCRLIPKHAVQDLI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNNYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKISCIFLSGFCPILAFLGPGCFERCRLIPKHAVQDLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
O81057	149	SKP1-like protein 14 OS=A	yes	no	0.507	0.463	0.478	1e-10
O49484	152	SKP1-like protein 11 OS=A	no	no	0.411	0.368	0.535	7e-10
Q9LSX8	152	SKP1-like protein 10 OS=A	no	no	0.411	0.368	0.482	1e-09
O65674	152	SKP1-like protein 12 OS=A	no	no	0.411	0.368	0.517	2e-09
P52285	162	SCF ubiquitin ligase comp	yes	no	0.426	0.358	0.5	3e-09
Q557E4	162	SCF ubiquitin ligase comp	yes	no	0.426	0.358	0.5	3e-09
O81058	200	SKP1-like protein 19 OS=A	no	no	0.419	0.285	0.456	4e-09
Q8TGW7	165	E3 ubiquitin ligase compl	N/A	no	0.404	0.333	0.545	5e-09
C5FHU9	165	E3 ubiquitin ligase compl	N/A	no	0.404	0.333	0.545	6e-09
A1C9U5	159	E3 ubiquitin ligase compl	N/A	no	0.404	0.345	0.545	7e-09

>sp|O81057|ASK14_ARATH SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 46/69 (66%)

Query: 31  EFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEE 90
           EF K      + ++LL ANYLNI  +LD   +T+A+RIK+K+ E IR+ F IEN+F PEE
Sbjct: 77  EFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEE 136

Query: 91  EEAARNDST 99
           E A R ++ 
Sbjct: 137 EAAVRKENA 145

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.
Arabidopsis thaliana (taxid: 3702)

>sp|O49484|ASK11_ARATH SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 43  EMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
           E++L ANYLNI  +LD   +T+A+ IK K+ E IR  F IEN+F PEEEEA R ++
Sbjct: 92  ELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKEN 147

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSX8|ASK10_ARATH SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 42/56 (75%)

Query: 43  EMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
           ++++ ANYLNI  +LD   +T+A+ IK+ +VE+ RKFF IEN++  EEEEA R ++
Sbjct: 92  DLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRREN 147

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|O65674|ASK12_ARATH SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 43  EMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
           E++L ANYLNI  + D   +T+A+ IK K+ E IR  F IEN+F PEEEEA R ++
Sbjct: 92  ELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKEN 147

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.

Arabidopsis thaliana (taxid: 3702)

>sp|P52285|SKP1A_DICDI SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 41  LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
           L E++L ANYL+I  +LD   +T+AN I+ K+ E IRK F I+N+F PEEEE  R ++
Sbjct: 96  LFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKEN 153

Dictyostelium discoideum (taxid: 44689)

>sp|Q557E4|SKP1B_DICDI SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 41  LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
           L E++L ANYL+I  +LD   +T+AN I+ K+ E IRK F I+N+F PEEEE  R ++
Sbjct: 96  LFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKEN 153

Dictyostelium discoideum (taxid: 44689)

>sp|O81058|ASK19_ARATH SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 42/57 (73%)

Query: 43  EMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDST 99
           +++L ANYLN+  + D  ++T+A+ IK+ + E +R+ F IEN+F PEEEEA RN++ 
Sbjct: 130 DIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENA 186

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8TGW7|SKP1_ARTOT E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma otae GN=sconC PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 41  LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAAR 95
           L E++L ANYL+I  +LD   +T+AN IK KS E IRK F I+N+F PEEE+  R
Sbjct: 102 LFEIILAANYLDIKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEEDQIR 156

Essential component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Controls sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Arthroderma otae (taxid: 63405)

>sp|C5FHU9|SKP1_ARTOC E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) GN=sconC PE=3 SV=1

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 41  LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAAR 95
           L E++L ANYL+I  +LD   +T+AN IK KS E IRK F I+N+F PEEE+  R
Sbjct: 102 LFEIILAANYLDIKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEEDQIR 156

Essential component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Controls sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) (taxid: 554155)

>sp|A1C9U5|SKP1_ASPCL E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=sconC PE=3 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 41  LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAAR 95
           L E++L ANYL+I  +LD   +T+AN IK KS E IRK F I+N+F PEEE+  R
Sbjct: 97  LFEIILAANYLDIKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEEDQIR 151

Essential component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Controls sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
338227616	180	SKP1 [Hevea brasiliensis]	0.595	0.45	0.456	1e-12
118482935	184	unknown [Populus trichocarpa]	0.492	0.364	0.537	7e-12
224081401	151	predicted protein [Populus trichocarpa]	0.492	0.443	0.537	1e-11
255544596	173	skp1, putative [Ricinus communis] gi|223	0.536	0.421	0.479	5e-11
356555221	183	PREDICTED: SCF ubiquitin ligase complex	0.5	0.371	0.529	1e-10
357451571	205	Fimbriata-associated protein [Medicago t	0.492	0.326	0.485	2e-10
357451617	196	Fimbriata-associated protein [Medicago t	0.492	0.341	0.470	2e-10
386688462	177	SFB-interacting Skp1-like protein 1 [Pru	0.492	0.378	0.447	3e-10
451320833	190	SLF-interacting Skp1-like protein 1 [Pyr	0.492	0.352	0.447	7e-10
357447221	226	Kinase-like protein [Medicago truncatula	0.433	0.261	0.525	2e-09

>gi|338227616|gb|AEI90837.1| SKP1 [Hevea brasiliensis]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 55/81 (67%)

Query: 18  HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIR 77
            S+  D       +F K  SN++L+E++L  NYL++  +LD L + +A+RIKNKSVEY+R
Sbjct: 90  ESAPEDARKAYDADFVKELSNEQLRELILAVNYLDVKNLLDVLNQAVADRIKNKSVEYVR 149

Query: 78  KFFRIENNFMPEEEEAARNDS 98
           +FF IEN+F PEEE   R ++
Sbjct: 150 QFFGIENDFTPEEEARLREEN 170

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482935|gb|ABK93380.1| unknown [Populus trichocarpa]

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 50/67 (74%)

Query: 31  EFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEE 90
           EF K KS+ +L +M+ VANYL I ++LD L + +A+RI+NKSVEY+R FF I+N+F  EE
Sbjct: 107 EFLKEKSDKDLVDMIPVANYLEIKDLLDVLNQAVADRIENKSVEYVRSFFGIDNDFTAEE 166

Query: 91  EEAARND 97
           E A R +
Sbjct: 167 EAALRQE 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081401|ref|XP_002306396.1| predicted protein [Populus trichocarpa] gi|222855845|gb|EEE93392.1| predicted protein [Populus trichocarpa]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 50/67 (74%)

Query: 31  EFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEE 90
           EF K KS+ +L +M+ VANYL I ++LD L + +A+RI+NKSVEY+R FF I+N+F  EE
Sbjct: 79  EFLKEKSDKDLVDMIPVANYLEIKDLLDVLNQAVADRIENKSVEYVRSFFGIDNDFTAEE 138

Query: 91  EEAARND 97
           E A R +
Sbjct: 139 EAALRQE 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544596|ref|XP_002513359.1| skp1, putative [Ricinus communis] gi|223547267|gb|EEF48762.1| skp1, putative [Ricinus communis]

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 50/73 (68%)

Query: 19  SSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRK 78
           S + D  +E    F    +N+E+KE++L  NYL +  +LD LT  +A RI+NKSVEY+RK
Sbjct: 83  SGSEDAKNEYDKSFLNEINNEEIKELILAVNYLEVKYLLDVLTNAVAKRIENKSVEYVRK 142

Query: 79  FFRIENNFMPEEE 91
           FF +E++F PEEE
Sbjct: 143 FFAVESDFTPEEE 155

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555221|ref|XP_003545933.1| PREDICTED: SCF ubiquitin ligase complex protein SKP1b-like [Glycine max]

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 49/68 (72%)

Query: 31  EFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEE 90
           EF K    DE+ E++L ANYLN+  +LD LT+ +A+ IKNKSVE++RKFF I N+F PEE
Sbjct: 105 EFVKTLGMDEVFELILAANYLNMKTLLDILTKIIADFIKNKSVEFVRKFFNIVNDFTPEE 164

Query: 91  EEAARNDS 98
           E   R ++
Sbjct: 165 EAKIREEN 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451571|ref|XP_003596062.1| Fimbriata-associated protein [Medicago truncatula] gi|355485110|gb|AES66313.1| Fimbriata-associated protein [Medicago truncatula]

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 31  EFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENN-FMPE 89
           EF K   N+E+K++ L ANYL+  ++LD+ ++ +A+RI+NKSVEY+RK+F IE+  F+P 
Sbjct: 106 EFVKNLDNEEVKDLFLAANYLDTKKLLDFTSQVIADRIENKSVEYVRKYFGIEDTEFLPG 165

Query: 90  EEEAARND 97
           EEE  R +
Sbjct: 166 EEEKLREE 173

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451617|ref|XP_003596085.1| Fimbriata-associated protein [Medicago truncatula] gi|355485133|gb|AES66336.1| Fimbriata-associated protein [Medicago truncatula]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 31  EFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENN-FMPE 89
           EF K   N+E+K++ L ANYL++ ++LD+ ++ +A+RI NKSVEY+RK+F +E+  F+P 
Sbjct: 89  EFVKNLDNEEVKDLFLAANYLDMKKLLDFTSQVIADRIANKSVEYVRKYFGVEDTEFLPG 148

Query: 90  EEEAARND 97
           EEE  R +
Sbjct: 149 EEEKLREE 156

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|386688462|gb|AFJ21661.1| SFB-interacting Skp1-like protein 1 [Prunus avium]

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 51/67 (76%)

Query: 31  EFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEE 90
           +F K ++ + + E++L A+YL++ ++L+ L + +A+RIKNKSVEY+RK F +EN+F PEE
Sbjct: 100 DFVKDETTEHIMELILAADYLHVDDLLEVLNQCVADRIKNKSVEYVRKLFGVENDFTPEE 159

Query: 91  EEAARND 97
           E+  R +
Sbjct: 160 EQKLREE 166

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451320833|emb|CCH26218.1| SLF-interacting Skp1-like protein 1 [Pyrus x bretschneideri]

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 50/67 (74%)

Query: 31  EFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEE 90
           +F K ++   + E+ L A+YLN+ +ML+ L + +A+RIKNKSVEY+R+ F +E++F PEE
Sbjct: 113 DFVKDETTGNVMELTLAADYLNVDQMLEVLNQCVADRIKNKSVEYVRQLFGVESDFTPEE 172

Query: 91  EEAARND 97
           E+  R++
Sbjct: 173 EQKLRDE 179

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447221|ref|XP_003593886.1| Kinase-like protein [Medicago truncatula] gi|355482934|gb|AES64137.1| Kinase-like protein [Medicago truncatula]

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 43/59 (72%)

Query: 37  SNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAAR 95
           +NDELKE LL  +YLN+  + + LT+ +A+RIKNK+V Y+R +F IEN+   EEE A R
Sbjct: 74  NNDELKEFLLAVHYLNMESLFEVLTQAVADRIKNKNVVYVRNYFGIENDLTAEEEAAIR 132

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2056956	149	SK14 "AT2G03170" [Arabidopsis	0.5	0.456	0.485	1.3e-11
TAIR|locus:2093094	152	SK10 "AT3G21860" [Arabidopsis	0.544	0.486	0.402	3.5e-11
TAIR|locus:2124281	152	SK11 "AT4G34210" [Arabidopsis	0.411	0.368	0.535	4.5e-11
WB|WBGene00004807	176	skr-1 [Caenorhabditis elegans	0.558	0.431	0.487	5.8e-11
UNIPROTKB|G5ECU1	176	skr-1 "Protein SKR-1" [Caenorh	0.558	0.431	0.487	5.8e-11
TAIR|locus:2139504	152	SK12 "AT4G34470" [Arabidopsis	0.411	0.368	0.517	1.2e-10
FB|FBgn0026176	161	skpB "skpB" [Drosophila melano	0.558	0.472	0.448	1.5e-10
UNIPROTKB|G4N3J5	168	MGG_04978 "E3 ubiquitin ligase	0.632	0.511	0.426	2e-10
DICTYBASE|DDB_G0269230	162	fpaA "ubiquitin ligase subunit	0.426	0.358	0.5	2.5e-10
DICTYBASE|DDB_G0273615	162	fpaB-2 "ubiquitin ligase subun	0.426	0.358	0.5	2.5e-10

TAIR|locus:2056956 SK14 "AT2G03170" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 33/68 (48%), Positives = 46/68 (67%)

Query:    31 EFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEE 90
             EF K      + ++LL ANYLNI  +LD   +T+A+RIK+K+ E IR+ F IEN+F PEE
Sbjct:    77 EFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEE 136

Query:    91 EEAARNDS 98
             E A R ++
Sbjct:   137 EAAVRKEN 144

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2093094 SK10 "AT3G21860" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 31/77 (40%), Positives = 51/77 (66%)

Query:    25 TSEDMVEFGKG---KSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFR 81
             + ED+ ++ K    K    + ++++ ANYLNI  +LD   +T+A+ IK+ +VE+ RKFF 
Sbjct:    71 SDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFN 130

Query:    82 IENNFMPEEEEAARNDS 98
             IEN++  EEEEA R ++
Sbjct:   131 IENDYTHEEEEAVRREN 147

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2124281 SK11 "AT4G34210" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query:    43 EMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
             E++L ANYLNI  +LD   +T+A+ IK K+ E IR  F IEN+F PEEEEA R ++
Sbjct:    92 ELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKEN 147

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00004807 skr-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 38/78 (48%), Positives = 49/78 (62%)

Query:    21 TSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFF 80
             T D  S D VEF K      L E++L ANYL+I  +LD   +T+AN IK KS E IR+ F
Sbjct:    96 TDDIGSWD-VEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKSPEEIRRTF 153

Query:    81 RIENNFMPEEEEAARNDS 98
              I+N+F PEEEE  R ++
Sbjct:   154 NIKNDFTPEEEEQIRKEN 171

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

UNIPROTKB|G5ECU1 skr-1 "Protein SKR-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 38/78 (48%), Positives = 49/78 (62%)

Query:    21 TSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFF 80
             T D  S D VEF K      L E++L ANYL+I  +LD   +T+AN IK KS E IR+ F
Sbjct:    96 TDDIGSWD-VEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKSPEEIRRTF 153

Query:    81 RIENNFMPEEEEAARNDS 98
              I+N+F PEEEE  R ++
Sbjct:   154 NIKNDFTPEEEEQIRKEN 171

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2139504 SK12 "AT4G34470" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query:    43 EMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
             E++L ANYLNI  + D   +T+A+ IK K+ E IR  F IEN+F PEEEEA R ++
Sbjct:    92 ELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKEN 147

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

FB|FBgn0026176 skpB "skpB" [Drosophila melanogaster (taxid:7227)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 35/78 (44%), Positives = 49/78 (62%)

Query:    21 TSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFF 80
             T D +S D  +F K      L E++L ANYLNI  +LD   +T+AN IK KS + IR  F
Sbjct:    80 TDDISSWD-ADFLK-VDQGTLFELILAANYLNIQGLLDVTCKTVANMIKGKSPQAIRDTF 137

Query:    81 RIENNFMPEEEEAARNDS 98
              I+N+F+P+EEE  R ++
Sbjct:   138 AIQNDFLPQEEEQVRKEN 155

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|G4N3J5 MGG_04978 "E3 ubiquitin ligase complex SCF subunit scon-3" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 38/89 (42%), Positives = 53/89 (59%)

Query:    13 VRDCDHSSTSDGTSEDMVEFG-KGKSNDE--LKEMLLVANYLNITEMLDYLTETLANRIK 69
             V+  D  S S   + D+ E+  K    D+  L E++L +NYL+I  +LD   +T+AN IK
Sbjct:    74 VQTSDEDSESRKKTTDIDEWDQKFMQVDQEMLFEIILASNYLDIKPLLDVGCKTVANMIK 133

Query:    70 NKSVEYIRKFFRIENNFMPEEEEAARNDS 98
              KS E IRK F I N+F PEEEE  R ++
Sbjct:   134 GKSPEEIRKTFNITNDFTPEEEEQIRREN 162

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0269230 fpaA "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query:    41 LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
             L E++L ANYL+I  +LD   +T+AN I+ K+ E IRK F I+N+F PEEEE  R ++
Sbjct:    96 LFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKEN 153

GO:0005515 "protein binding" evidence=IPI

GO:0030587 "sorocarp development" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

DICTYBASE|DDB_G0273615 fpaB-2 "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query:    41 LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
             L E++L ANYL+I  +LD   +T+AN I+ K+ E IRK F I+N+F PEEEE  R ++
Sbjct:    96 LFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKEN 153

GO:0030587 "sorocarp development" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
pfam01466	78	pfam01466, Skp1, Skp1 family, dimerisation domain	8e-19
COG5201	158	COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen	8e-12
TIGR03998	528	TIGR03998, thiol_BshC, bacillithiol biosynthesis c	0.003

>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain

 Score = 74.5 bits (184), Expect = 8e-19
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query: 38 NDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARND 97
           D L +++L ANYLNI  +LD   + +A+ IK K+ E IR+ F IEN+F PEEEE  R +
Sbjct: 13 QDTLFDLILAANYLNIKGLLDLACQKVADMIKGKTPEEIREIFGIENDFTPEEEEEIRKE 72

Length = 78

>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

 Score = 58.8 bits (142), Expect = 8e-12
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 12/94 (12%)

Query: 16  CDHSSTSDGTSEDMVEFGKGKSNDE------------LKEMLLVANYLNITEMLDYLTET 63
            +H ++S    E+ +E  K K +D             L E+ L ANYL I  +LD   + 
Sbjct: 58  MEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKI 117

Query: 64  LANRIKNKSVEYIRKFFRIENNFMPEEEEAARND 97
           +A  I+ KS E IR+ F IEN+F PEEE   R +
Sbjct: 118 VAEMIRGKSPEEIRETFNIENDFTPEEERRIRKE 151

Length = 158

>gnl|CDD|234437 TIGR03998, thiol_BshC, bacillithiol biosynthesis cysteine-adding enzyme BshC

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 45  LLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKISCI 104
           L   N   IT+ +++L + L   I+ K    +++F RI+ N  P      R         
Sbjct: 445 LAEKNLAKITKQVEFLEKRLLRAIRRKHDVELQQFDRIQTNLRPNGALQER--------- 495

Query: 105 FLSGFCPILAFLGPGCFER 123
            +      L   GP   E+
Sbjct: 496 -VWNVFYYLNKYGPDLIEK 513

Members of this protein family are BshC, an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 528

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	100.0
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	100.0
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	99.96
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	99.39
KOG3473	112	consensus RNA polymerase II transcription elongati	97.05
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	96.88
PHA02713	557	hypothetical protein; Provisional	95.96
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	95.16
PHA02790	480	Kelch-like protein; Provisional	94.81
KOG3433	203	consensus Protein involved in meiotic recombinatio	94.55
PHA03098	534	kelch-like protein; Provisional	94.2
COG5124	209	Protein predicted to be involved in meiotic recomb	93.94
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.33
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	92.77
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	84.47
KOG2716	230	consensus Polymerase delta-interacting protein PDI	81.46

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-36  Score=231.54  Aligned_cols=102  Identities=37%  Similarity=0.505  Sum_probs=92.4

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCC--------chHH----HhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGT--------SEDM----VEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANR   67 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~--------~~~l----~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~   67 (136)
                      |+||+|.||+|||+||+ |+++++..        ..++    ++|++ +|.++||+|+.|||||+|++|+++||++||+|
T Consensus        48 l~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk-~d~~tLfdli~AAnyLdi~gLl~~~ck~va~m  126 (162)
T KOG1724|consen   48 LPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLK-VDQGTLFDLILAANYLDIKGLLDLTCKTVANM  126 (162)
T ss_pred             cCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHh-cCHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence            68999999999999999 99874311        1113    99999 49999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHcCCCCCCCHHHHHHHhhhhchhhh
Q 045340           68 IKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKISC  103 (136)
Q Consensus        68 ikgKt~eEIR~~fgI~~D~T~EEee~ir~en~w~~~  103 (136)
                      +|||||+|||+.|||++|+||||++++|++|.|+++
T Consensus       127 ikgktpeEir~~f~I~~d~t~eE~~~~~~e~~~~~~  162 (162)
T KOG1724|consen  127 IKGKTPEEIREIFNIENDETPEEEEAIRKENEWAFE  162 (162)
T ss_pred             HccCCHHHHHHHcCCCCCCChhHHHHHhhccccccC
Confidence            999999999999999999999999999999999874

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-35  Score=220.17  Aligned_cols=102  Identities=33%  Similarity=0.370  Sum_probs=91.0

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchH----------H--HhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSED----------M--VEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANR   67 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~----------l--~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~   67 (136)
                      +|||.|.+|.||++||+ |++....++.+          .  +.|+++ |+++|++++.|||||+|++|+++||+.||+|
T Consensus        43 ~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~v-DqemL~eI~laaNYL~ikpLLd~gCKivaem  121 (158)
T COG5201          43 APNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEV-DQEMLLEICLAANYLEIKPLLDLGCKIVAEM  121 (158)
T ss_pred             ccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHh-hHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence            47999999999999999 76643222211          2  567787 9999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHcCCCCCCCHHHHHHHhhhhchhhh
Q 045340           68 IKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKISC  103 (136)
Q Consensus        68 ikgKt~eEIR~~fgI~~D~T~EEee~ir~en~w~~~  103 (136)
                      |+||||+|||++|||+|||||||+++||+||.|+++
T Consensus       122 irgkSpeeir~tfni~ndfTpEEe~~irkEnEWaed  157 (158)
T COG5201         122 IRGKSPEEIRETFNIENDFTPEEERRIRKENEWAED  157 (158)
T ss_pred             HccCCHHHHHHHhCCCCCCCHHHHHHHHHhcccccc
Confidence            999999999999999999999999999999999986

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=99.96  E-value=4.6e-29  Score=169.35  Aligned_cols=73  Identities=47%  Similarity=0.601  Sum_probs=63.4

Q ss_pred             HhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHhhhhchhhh
Q 045340           30 VEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKISC  103 (136)
Q Consensus        30 ~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fgI~~D~T~EEee~ir~en~w~~~  103 (136)
                      ++|++. +.+.|++|+.||+||+|++|++++|++||++|+||||+|||++|||++|+|+||++++|++|+|+++
T Consensus         6 ~~F~~~-~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e~~w~~~   78 (78)
T PF01466_consen    6 QEFLDV-DNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKENEWAFE   78 (78)
T ss_dssp             HHHT-S--HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHHCCCTB-
T ss_pred             HHHHHc-CHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHHcchhcC
Confidence            689976 9999999999999999999999999999999999999999999999999999999999999999975

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>smart00512 Skp1 Found in Skp1 protein family

Probab=99.39  E-value=4.5e-13  Score=94.49  Aligned_cols=52  Identities=33%  Similarity=0.463  Sum_probs=43.5

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCc-----hHH-HhhccCCChhHHHHHHHhhhhhch
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTS-----EDM-VEFGKGKSNDELKEMLLVANYLNI   53 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~-----~~l-~~Fl~~ld~~~L~~Li~AAnyL~I   53 (136)
                      +++|+|.+|++|++||+ |+.++....     .++ .+|++. ++++|++|++|||||+|
T Consensus        46 l~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~-d~~~l~dLl~AAnyL~I  104 (104)
T smart00512       46 LPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKI-DQETLFELILAANYLDI  104 (104)
T ss_pred             CCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcC-CHHHHHHHHHHHHhhCC
Confidence            58999999999999999 887653221     223 899995 99999999999999997

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=97.05  E-value=0.00056  Score=49.04  Aligned_cols=50  Identities=22%  Similarity=0.186  Sum_probs=35.9

Q ss_pred             CCCcHHHHHHHHHhhcCCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhch
Q 045340            2 DNNYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNI   53 (136)
Q Consensus         2 ~nV~s~~L~kViewC~H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I   53 (136)
                      ++++|.+|+||.+|..++-.=.....++-+| +. ..++.++|++|||||++
T Consensus        63 ~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF-~I-ppemaleLL~aAn~Lec  112 (112)
T KOG3473|consen   63 RDIPSHILEKVCEYLAYKVRYTNSSTEIPEF-DI-PPEMALELLMAANYLEC  112 (112)
T ss_pred             ccchHHHHHHHHHHhhheeeeccccccCCCC-CC-CHHHHHHHHHHhhhhcC
Confidence            5789999999999998221101111234567 44 89999999999999974

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=96.88  E-value=0.00052  Score=44.22  Aligned_cols=19  Identities=32%  Similarity=0.407  Sum_probs=16.1

Q ss_pred             CCCCcHHHHHHHHHhhcCC
Q 045340            1 MDNNYSRWKSKGVRDCDHS   19 (136)
Q Consensus         1 i~nV~s~~L~kViewC~H~   19 (136)
                      +++|+|++|+||++||+|.
T Consensus        42 l~~v~~~~L~kViewc~~H   60 (62)
T PF03931_consen   42 LPNVSSRILKKVIEWCEHH   60 (62)
T ss_dssp             ETTS-HHHHHHHHHHHHHH
T ss_pred             cCccCHHHHHHHHHHHHhc
Confidence            5799999999999999864

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>PHA02713 hypothetical protein; Provisional

Probab=95.96  E-value=0.032  Score=49.74  Aligned_cols=63  Identities=13%  Similarity=0.114  Sum_probs=48.7

Q ss_pred             CCCCcHHHHHHHHHhhcCCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHH
Q 045340            1 MDNNYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRK   78 (136)
Q Consensus         1 i~nV~s~~L~kViewC~H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR~   78 (136)
                      |.+|+..+|+.|++|+....               ++.+.+.+|+.||++|+|+.|.+.||+.+.+.+.-.+-=+|+.
T Consensus        71 l~~v~~~~~~~ll~y~Yt~~---------------i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~  133 (557)
T PHA02713         71 LQMFDKDAVKNIVQYLYNRH---------------ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYH  133 (557)
T ss_pred             eccCCHHHHHHHHHHhcCCC---------------CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHH
Confidence            35678888888888877311               2455688999999999999999999999988877666666654

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=95.16  E-value=0.041  Score=34.87  Aligned_cols=47  Identities=15%  Similarity=0.174  Sum_probs=32.5

Q ss_pred             CCCcHHHHHHHHHhhcCCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHH
Q 045340            2 DNNYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLT   61 (136)
Q Consensus         2 ~nV~s~~L~kViewC~H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c   61 (136)
                      ++++..+++.+++|+.+..-            . ++...+.+++.+|+++++++|.+.|+
T Consensus        44 ~~~~~~~f~~~l~~ly~~~~------------~-~~~~~~~~l~~~a~~~~~~~l~~~c~   90 (90)
T smart00225       44 DDVSPEDFRALLEFLYTGKL------------D-LPEENVEELLELADYLQIPGLVELCE   90 (90)
T ss_pred             cCCCHHHHHHHHHeecCcee------------e-cCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence            45666666666666663211            1 13447889999999999999998763

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PHA02790 Kelch-like protein; Provisional

Probab=94.81  E-value=0.056  Score=47.11  Aligned_cols=54  Identities=4%  Similarity=-0.102  Sum_probs=33.0

Q ss_pred             CCcHHHHHHHHHhhcCCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhc
Q 045340            3 NNYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIK   69 (136)
Q Consensus         3 nV~s~~L~kViewC~H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ik   69 (136)
                      +|+..+|+.|++|..-..            +. ++.+.+.+|+.||++|+|+.+.+.||+.+...|.
T Consensus        68 ~v~~~~l~~lldy~YTg~------------l~-it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~  121 (480)
T PHA02790         68 DLDIHSLTSIVIYSYTGK------------VY-IDSHNVVNLLRASILTSVEFIIYTCINFILRDFR  121 (480)
T ss_pred             CcCHHHHHHHHHhheeee------------EE-EecccHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            577777888887765111            11 1444566677777777777777777666655433

>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.55  E-value=0.056  Score=42.68  Aligned_cols=38  Identities=34%  Similarity=0.404  Sum_probs=31.3

Q ss_pred             HHhhhhh--chHHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Q 045340           45 LLVANYL--NITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFM   87 (136)
Q Consensus        45 i~AAnyL--~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fgI~~D~T   87 (136)
                      +.|||.-  ||--|.+++|+..     |.-+.+||+.||||.||.
T Consensus       161 ~eaanrwtDnI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d  200 (203)
T KOG3433|consen  161 AEAANRWTDNIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD  200 (203)
T ss_pred             HHHHhhhhhhHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence            3455533  8889999999876     999999999999999984

>PHA03098 kelch-like protein; Provisional

Probab=94.20  E-value=0.13  Score=44.78  Aligned_cols=55  Identities=15%  Similarity=0.185  Sum_probs=34.4

Q ss_pred             cHHHHHHHHHhhcCCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCC
Q 045340            5 YSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKS   72 (136)
Q Consensus         5 ~s~~L~kViewC~H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt   72 (136)
                      +.++++.|++|.....            +. ++.+.+.+|+.||++|+++.|.+.|++.+...+.-.+
T Consensus        55 ~~~~~~~~l~y~Ytg~------------~~-i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~n  109 (534)
T PHA03098         55 DYDSFNEVIKYIYTGK------------IN-ITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN  109 (534)
T ss_pred             CHHHHHHHHHHhcCCc------------eE-EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhH
Confidence            5566666666655211            11 2455577777777777777777777777766654433

>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]

Probab=93.94  E-value=0.059  Score=42.48  Aligned_cols=31  Identities=35%  Similarity=0.479  Sum_probs=27.6

Q ss_pred             chHHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Q 045340           52 NITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFM   87 (136)
Q Consensus        52 ~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fgI~~D~T   87 (136)
                      +|.-|.++.|+..     |.-|+|||+.||||.|+.
T Consensus       174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld  204 (209)
T COG5124         174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLD  204 (209)
T ss_pred             hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchh
Confidence            6888999999876     899999999999999874

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.33  E-value=0.16  Score=45.61  Aligned_cols=54  Identities=20%  Similarity=0.170  Sum_probs=39.2

Q ss_pred             CCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhc
Q 045340            2 DNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIK   69 (136)
Q Consensus         2 ~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ik   69 (136)
                      .+|++.+|+.+++|+. ..             +. ++.+..-+|+.||++|+|+++.+.||..+...+-
T Consensus        81 ~~v~~~~l~~ll~y~Yt~~-------------i~-i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~  135 (571)
T KOG4441|consen   81 EGVDPETLELLLDYAYTGK-------------LE-ISEDNVQELLEAASLLQIPEVVDACCEFLESQLD  135 (571)
T ss_pred             ecCCHHHHHHHHHHhhcce-------------EE-echHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence            4567777777777765 32             12 3667788889999999999999999988776543

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=92.77  E-value=0.15  Score=34.51  Aligned_cols=29  Identities=24%  Similarity=0.394  Sum_probs=26.1

Q ss_pred             hhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 045340           38 NDELKEMLLVANYLNITEMLDYLTETLAN   66 (136)
Q Consensus        38 ~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~   66 (136)
                      .+.+.+++.+|++|+++.|.+.|++.+..
T Consensus        81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~  109 (111)
T PF00651_consen   81 DENVEELLELADKLQIPELKKACEKFLQE  109 (111)
T ss_dssp             TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            66799999999999999999999998754

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=84.47  E-value=1.2  Score=34.67  Aligned_cols=41  Identities=34%  Similarity=0.315  Sum_probs=31.8

Q ss_pred             HHHHHhhhhh--chHHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Q 045340           42 KEMLLVANYL--NITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFM   87 (136)
Q Consensus        42 ~~Li~AAnyL--~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fgI~~D~T   87 (136)
                      .....|||.-  ||-.|..++++.     -|.+.+++|+.||||+||.
T Consensus       145 ~~~~~~anrwTDNI~~l~~~~~~k-----~~~~~~~i~k~f~Ip~d~d  187 (188)
T PF03962_consen  145 KIAKEAANRWTDNIFSLKSYLKKK-----FGMDEEDIRKEFGIPEDFD  187 (188)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHh-----cCCCHHHHHHHcCCccccC
Confidence            3344477665  688888888775     3999999999999999984

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]

Probab=81.46  E-value=6.2  Score=32.02  Aligned_cols=35  Identities=26%  Similarity=0.411  Sum_probs=32.2

Q ss_pred             ChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCC
Q 045340           37 SNDELKEMLLVANYLNITEMLDYLTETLANRIKNK   71 (136)
Q Consensus        37 d~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgK   71 (136)
                      +..+|-+|+.=|.|-.+.+|+++|..+++..+++.
T Consensus        74 ~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~  108 (230)
T KOG2716|consen   74 SEKELKELLREAEFYLLDGLVELCQSAIARLIRGY  108 (230)
T ss_pred             chHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCc
Confidence            45689999999999999999999999999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	136
1fqv_B	149	Insights Into Scf Ubiquitin Ligases From The Struct		1e-08
3l2o_A	149	Structure-Based Mechanism Of Dimerization-Dependent		1e-08
2e31_B	166	Structural Basis For Selection Of Glycosylated Subs		2e-08
2ast_A	159	Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len		2e-08
1p22_B	145	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-08
2p1m_A	160	Tir1-ask1 Complex Structure Length = 160		4e-08
1nex_A	169	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-08
3mks_A	169	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		7e-08
1fs1_B	141	Insights Into Scf Ubiquitin Ligases From The Struct		2e-06
1ldk_D	133	Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu		2e-04

>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 41  LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
           L E++L ANYL+I  +LD   +T+AN IK K+ E IRK F I+N+F  EEE   R ++
Sbjct: 86  LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 143

>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 41  LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
           L E++L ANYL+I  +LD   +T+AN IK K+ E IRK F I+N+F  EEE   R ++
Sbjct: 86  LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 143

>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 43  EMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
           E++L ANYL+I  +LD   +T+AN IK K+ E IRK F I+N+F  EEE   R ++
Sbjct: 105 ELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 160

>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 41  LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
           L E++L ANYL+I  +LD   +T+AN IK K+ E IRK F I+N+F  EEE   R ++
Sbjct: 82  LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 139

>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 16/103 (15%)
Query: 1   MDNNYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELK---------------EML 45
           + N  S+  +K +  C     +  +  + VE G   S+D+LK               E++
Sbjct: 44  LPNVTSKILAKVIEYCKRHVEAAASKAEAVE-GAATSDDDLKAWDADFMKIDQATLFELI 102
Query: 46  LVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMP 88
           L ANYLNI  +LD   +T+A+ IK K+ E IR  F I+N+F P
Sbjct: 103 LAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTP 145

>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 41  LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
           L E++L ANYLNI  +LD   + +A  I+ +S E IR+ F I N+F PEEE A R ++
Sbjct: 106 LYEIILAANYLNIKPLLDAGCKVVAEXIRGRSPEEIRRTFNIVNDFTPEEEAAIRREN 163

>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 41  LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARNDS 98
           L E++L ANYLNI  +LD   + +A  I+ +S E IR+ F I N+F PEEE A R ++
Sbjct: 106 LYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRREN 163

>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 41  LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNF 86
           L E++L ANYL+I  +LD   +T+AN IK K+ E IRK F I+N+F
Sbjct: 94  LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 139

>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 133

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 41  LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFF 80
           L E++L ANYL+I  +LD   +T+AN IK K+ E IRK F
Sbjct: 93  LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	1e-12
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	2e-11
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	6e-11
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	7e-10

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169

 Score = 60.2 bits (145), Expect = 1e-12
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query: 38  NDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAARND 97
            + L E++L ANYLNI  +LD   + +A  I+ +S E IR+ F I N+F PEEE A R +
Sbjct: 103 QEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRE 162

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160

 Score = 56.0 bits (134), Expect = 6e-11
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 17  DHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYI 76
             +++ D       +F K      L E++L ANYLNI  +LD   +T+A+ IK K+ E I
Sbjct: 75  GAATSDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEI 133

Query: 77  RKFFRIENNFMPEEEEAARND 97
           R  F I+N+F PEEEE  R +
Sbjct: 134 RTTFNIKNDFTPEEEEEVRRE 154

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141

 Score = 52.7 bits (126), Expect = 7e-10
 Identities = 24/49 (48%), Positives = 33/49 (67%)

Query: 38  NDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNF 86
              L E++L ANYL+I  +LD   +T+AN IK K+ E IRK F I+N+F
Sbjct: 91  QGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	100.0
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	100.0
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	100.0
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	99.97
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	99.36
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	99.34
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	99.33
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.08
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	97.47
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	96.9
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	96.78
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	96.72
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	96.69
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	96.42
2vpk_A	116	Myoneurin; transcription regulation, transcription	96.38
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	96.37
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	96.34
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	96.32
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	96.29
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	96.12
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	96.03
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	95.9
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	95.61
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	95.07
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	94.86
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	93.27
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	93.07
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	90.54

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=100.00  E-value=1.4e-40  Score=253.31  Aligned_cols=102  Identities=34%  Similarity=0.410  Sum_probs=88.9

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCC--------c---hHH-HhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGT--------S---EDM-VEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANR   67 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~--------~---~~l-~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~   67 (136)
                      +|||+|.+|+||++||+ |++++...        .   .++ ++|+++ |.++||+|++|||||+|++|+++||++||+|
T Consensus        54 lpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~v-d~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~  132 (169)
T 3v7d_A           54 VPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKV-DQEMLYEIILAANYLNIKPLLDAGCKVVAEM  132 (169)
T ss_dssp             CTTCCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            68999999999999999 98775321        1   123 889996 9999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHcCCCCCCCHHHHHHHhhhhchhhh
Q 045340           68 IKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKISC  103 (136)
Q Consensus        68 ikgKt~eEIR~~fgI~~D~T~EEee~ir~en~w~~~  103 (136)
                      |+||||||||++|||+||||||||+++|+||+|+++
T Consensus       133 ikgktpeeiR~~f~I~nd~t~eEe~~ir~en~W~~~  168 (169)
T 3v7d_A          133 IRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWAED  168 (169)
T ss_dssp             HTTCCHHHHHHHHTCCCCCCHHHHHHHHTTC-----
T ss_pred             HcCCCHHHHHHHcCCCCCCCHHHHHHHHHhcccccc
Confidence            999999999999999999999999999999999987

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=100.00  E-value=5.9e-39  Score=241.76  Aligned_cols=102  Identities=36%  Similarity=0.538  Sum_probs=73.5

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCC----------CchHH----HhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDG----------TSEDM----VEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLA   65 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~----------~~~~l----~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA   65 (136)
                      +|||+|.+|+||++||+ |++++..          ...++    ++|+++ |.++||+|+.|||||+|++|+++||++||
T Consensus        44 l~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~v-d~~~l~eLi~AAnyL~I~~Lldl~c~~vA  122 (160)
T 2p1m_A           44 LPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKI-DQATLFELILAANYLNIKNLLDLTCQTVA  122 (160)
T ss_dssp             CTTSCHHHHHHHHHC-------------------------------------------CHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            68999999999999999 8865421          11122    889996 99999999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHcCCCCCCCHHHHHHHhhhhchhhh
Q 045340           66 NRIKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKISC  103 (136)
Q Consensus        66 ~~ikgKt~eEIR~~fgI~~D~T~EEee~ir~en~w~~~  103 (136)
                      +||+||||+|||++|||+||||||||++||+||+|+++
T Consensus       123 ~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~en~w~~~  160 (160)
T 2p1m_A          123 DMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE  160 (160)
T ss_dssp             HTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCccccC
Confidence            99999999999999999999999999999999999974

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=99.97  E-value=1.3e-32  Score=203.36  Aligned_cols=87  Identities=37%  Similarity=0.499  Sum_probs=70.5

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCC---------chH---H-HhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGT---------SED---M-VEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLAN   66 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~---------~~~---l-~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~   66 (136)
                      +|||+|.+|+||++||+ |++++...         ..+   + ++|+++ |.++||+|+.|||||+|++|+++||++||+
T Consensus        41 l~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~v-d~~~l~eLi~AAnyL~I~~Lldl~c~~vA~  119 (141)
T 1fs1_B           41 LPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKV-DQGTLFELILAANYLDIKGLLDVTCKTVAN  119 (141)
T ss_dssp             CTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCS-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhC-CHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            68999999999999999 88765211         112   3 889996 999999999999999999999999999999


Q ss_pred             HhcCCCHHHHHHHcCCCCCCCH
Q 045340           67 RIKNKSVEYIRKFFRIENNFMP   88 (136)
Q Consensus        67 ~ikgKt~eEIR~~fgI~~D~T~   88 (136)
                      +|+||||||||++|||+|||||
T Consensus       120 ~ikgkt~eeiR~~f~I~~d~tp  141 (141)
T 1fs1_B          120 MIKGKTPEEIRKTFNIKNDFTE  141 (141)
T ss_dssp             HHTTCCHHHHHHHTC-------
T ss_pred             HHcCCCHHHHHHHcCCCCCCCC
Confidence            9999999999999999999997

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=99.36  E-value=6.5e-14  Score=97.68  Aligned_cols=51  Identities=25%  Similarity=0.319  Sum_probs=41.0

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCC--CCchHHHhhccCCChhHHHHHHHhhhhhch
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSD--GTSEDMVEFGKGKSNDELKEMLLVANYLNI   53 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~--~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I   53 (136)
                      +|||+|.+|+||++||+ |++++.  ....++.+| ++ |+++||+|+.|||||||
T Consensus        46 lp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w-~v-d~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           46 LKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF-EI-PTEMSLELLLAADYLSI   99 (99)
T ss_dssp             ETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC-CC-CHHHHHHHHHHHHHHCC
T ss_pred             cCCcCHHHHHHHHHHHHHhcccCCCccccccCCCc-cC-CHHHHHHHHHHHHHhCc
Confidence            58999999999999999 885432  112235567 65 99999999999999997

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=99.34  E-value=1.4e-13  Score=98.17  Aligned_cols=50  Identities=22%  Similarity=0.205  Sum_probs=40.8

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhch
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNI   53 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I   53 (136)
                      +|||+|.+|+||++||+ |++++.. ..++.+| ++ |+++||+|++|||||+|
T Consensus        62 lpnV~s~iL~kVieyc~~h~~~~~~-~~~i~~w-~v-d~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           62 FREIPSHVLSKVCMYFTYKVRYTNS-STEIPEF-PI-APEIALELLMAANFLDC  112 (112)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHSSC-SSCCCCC-CC-CHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhhhccCC-cCCCCCc-cc-CHHHHHHHHHHHHHhCc
Confidence            68999999999999999 8764321 2234567 65 99999999999999997

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=99.33  E-value=9.9e-14  Score=96.18  Aligned_cols=50  Identities=22%  Similarity=0.205  Sum_probs=40.5

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhch
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNI   53 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I   53 (136)
                      +|||+|.+|+||++||+ |++++.. .+++.+| ++ |+++||+|+.|||||+|
T Consensus        46 l~~V~~~iL~kVieyc~~h~~~~~~-~~~i~~w-~v-d~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           46 FREIPSHVLSKVCMYFTYKVRYTNS-STEIPEF-PI-APEIALELLMAANFLDC   96 (96)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHSC-CSCCCCC-CC-CTTTHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHccccCCC-cccCCCc-cc-CHHHHHHHHHHHHHhCc
Confidence            68999999999999999 8754321 1234557 65 99999999999999997

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.08  E-value=1.9e-11  Score=84.27  Aligned_cols=49  Identities=22%  Similarity=0.216  Sum_probs=39.6

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhc
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLN   52 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~   52 (136)
                      +|||+|.+|+||++||+ |++++.. ..++.+| ++ +.+.|++|+.|||||+
T Consensus        47 l~~V~~~iL~kViey~~~h~~~~~~-~~~i~~~-~i-~~~~l~eLl~AAnyL~   96 (97)
T 4ajy_C           47 FREIPSHVLSKVCMYFTYKVRYTNS-STEIPEF-PI-APEIALELLMAANFLD   96 (97)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHTTC-CSCCCCC-CC-CGGGHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhcccCCC-cCCCCcC-cC-CHHHHHHHHHHHhhhC
Confidence            68999999999999999 8765421 1224556 54 9999999999999998

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=97.47  E-value=5.7e-05  Score=53.64  Aligned_cols=60  Identities=8%  Similarity=0.048  Sum_probs=42.0

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHH
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVE   74 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~e   74 (136)
                      |++++.++++.+++|+. .+-.              ++.+.+.+|+.||++|+|+.|.+.|++.+...+.|+++.
T Consensus        65 l~~~~~~~f~~lL~fiYtg~~~--------------i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~~  125 (135)
T 2yy9_A           65 LPAGFAEIFGLLLDFFYTGHLA--------------LTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQS  125 (135)
T ss_dssp             ECGGGHHHHHHHHHHHHHSCCC--------------CCTTTHHHHHHHHHHTTCHHHHHHHHHCCC---------
T ss_pred             eCCCCHHHHHHHHHHHhCCCCC--------------CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCCC
Confidence            46788888999999988 4321              244568999999999999999999999999998888764

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=96.90  E-value=0.0024  Score=44.04  Aligned_cols=54  Identities=13%  Similarity=0.097  Sum_probs=43.2

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHh
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRI   68 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~i   68 (136)
                      +++++.++++.+++|+. -.-.              ++.+.+.+|+.||++|++++|.+.|++.+.+.|
T Consensus        67 l~~~~~~~f~~ll~~~Ytg~~~--------------~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I  121 (121)
T 1buo_A           67 LDFLSPKTFQQILEYAYTATLQ--------------AKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ  121 (121)
T ss_dssp             ECSSCHHHHHHHHHHHHHSCCC--------------CCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             eCCCCHHHHHHHHHhhcCCCcC--------------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence            46788888888888888 3221              144568999999999999999999999987654

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=96.78  E-value=0.0015  Score=45.50  Aligned_cols=53  Identities=9%  Similarity=-0.054  Sum_probs=41.3

Q ss_pred             CCCCcHHHHHHHHHhhcCCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 045340            1 MDNNYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLAN   66 (136)
Q Consensus         1 i~nV~s~~L~kViewC~H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~   66 (136)
                      +++|+..+++.+++|+....            +. ++.+.+.+|+.||++|+|++|.+.|++++.+
T Consensus        65 l~~v~~~~f~~ll~fiYtg~------------~~-i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~  117 (119)
T 3m5b_A           65 GEGISPSTFAQLLNFVYGES------------VE-LQPGELRPLQEAARALGVQSLEEACWRARGD  117 (119)
T ss_dssp             CSSCCHHHHHHHHHHHTTCC------------EE-ECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             eCCCCHHHHHHHHHHHcCCC------------cC-cCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            46788999999999987211            12 2566789999999999999999999998754

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=96.72  E-value=0.0035  Score=41.93  Aligned_cols=53  Identities=8%  Similarity=-0.068  Sum_probs=41.4

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANR   67 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~   67 (136)
                      +++++..+++.+++|+. -.-.              ++.+.+.+|+.||+++++++|.+.|.+.+.+.
T Consensus        55 l~~~~~~~f~~~l~~iYt~~~~--------------~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~  108 (109)
T 2vkp_A           55 IPDVEPAAFLILLKYMYSDEID--------------LEADTVLATLYAAKKYIVPALAKACVNFLETS  108 (109)
T ss_dssp             ETTSCHHHHHHHHHHHHHCCCC--------------CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHcCCCcc--------------CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            35677888888888877 3221              24566889999999999999999999998764

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=96.69  E-value=0.0056  Score=43.90  Aligned_cols=63  Identities=6%  Similarity=0.025  Sum_probs=47.9

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHH
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIR   77 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR   77 (136)
                      +++++..+++.+++|+. ..-             . ++.+.+.+|+.+|+++++++|.+.|.+.+...+...+.-++.
T Consensus        78 l~~~~~~~f~~~l~~~Yt~~~-------------~-~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~  141 (172)
T 3htm_A           78 INDVEPEVFKEMMCFIYTGKA-------------P-NLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL  141 (172)
T ss_dssp             ECSSCHHHHHHHHHHHHHSCC-------------T-TGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHH
T ss_pred             ecCCCHHHHHHHHHHHhCCCC-------------C-CcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            35677777777777776 321             1 145568899999999999999999999999887777766554

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=96.42  E-value=0.0089  Score=40.75  Aligned_cols=50  Identities=14%  Similarity=0.070  Sum_probs=37.7

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHH
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETL   64 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~I   64 (136)
                      +++++..+++.+++|+. ..-             . ++.+.+.+|+.||+++++++|.+.|.+.+
T Consensus        69 l~~~~~~~f~~ll~~~Yt~~~-------------~-~~~~~~~~ll~~A~~~~i~~L~~~C~~~L  119 (120)
T 2if5_A           69 IDFVSAEALTALMDFAYTATL-------------T-VSTANVGDILSAARLLEIPAVSHVCADLL  119 (120)
T ss_dssp             CCSSCHHHHHHHHHHHHHSCC-------------C-CCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHcCCCC-------------c-cCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            35667777777777776 321             1 24567899999999999999999998765

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=96.38  E-value=0.008  Score=40.85  Aligned_cols=50  Identities=14%  Similarity=0.058  Sum_probs=40.1

Q ss_pred             CCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 045340            2 DNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLA   65 (136)
Q Consensus         2 ~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA   65 (136)
                      ++++.++++.+++|+. -.-.              ++.+.+.+|+.||++|++++|.+.|++.+.
T Consensus        65 ~~~~~~~f~~ll~~~Yt~~~~--------------~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~  115 (116)
T 2vpk_A           65 SQVKADGFQKLLEFIYTGTLN--------------LDSWNVKEIHQAADYLKVEEVVTKCKIKME  115 (116)
T ss_dssp             TTCCHHHHHHHHHHHHHSCCC--------------CCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHcCCCcc--------------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            3788899999999988 3221              144568899999999999999999998763

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=96.37  E-value=0.0045  Score=42.54  Aligned_cols=50  Identities=12%  Similarity=0.133  Sum_probs=39.0

Q ss_pred             CCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 045340            2 DNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLA   65 (136)
Q Consensus         2 ~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA   65 (136)
                      ++++.++++.+++|+. -.-.              ++.+.+.+|+.||++|++++|.+.|++.++
T Consensus        67 ~~~~~~~f~~ll~~~Ytg~~~--------------i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~  117 (119)
T 2q81_A           67 DISNAAGLGQVLEFMYTAKLS--------------LSPENVDDVLAVATFLQMQDIITACHALKS  117 (119)
T ss_dssp             GGCCHHHHHHHHHHHHHSCCC--------------CCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHcCCCCc--------------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            4567788888888877 3221              244568899999999999999999998874

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=96.34  E-value=0.0085  Score=46.06  Aligned_cols=58  Identities=12%  Similarity=0.091  Sum_probs=34.8

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCC
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKS   72 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt   72 (136)
                      +++|+..+++.+++|+. -.-.              ++.+.+.+|+.||++|++++|.+.|++.+...+.-.+
T Consensus        77 l~~v~~~~f~~ll~~~Yt~~~~--------------i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n  135 (256)
T 3hve_A           77 LEGISVMVMREILDYIFSGQIR--------------LNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAEN  135 (256)
T ss_dssp             CSSCCHHHHHHHHHHHHHSCCC--------------CC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSST
T ss_pred             eCCCCHHHHHHHHhhccCCCCc--------------ccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhh
Confidence            46788888888888887 3321              1233455566666666666666666665555444333

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=96.32  E-value=0.0033  Score=43.89  Aligned_cols=59  Identities=5%  Similarity=0.036  Sum_probs=39.3

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCH
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSV   73 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~   73 (136)
                      +++++..+++.+++|+. ..-.              ++.+.+.+|+.+|+++++++|.+.|++.+...+...+.
T Consensus        69 l~~~~~~~~~~~l~~~Y~~~~~--------------~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~  128 (145)
T 4eoz_A           69 INDVEPEVFKEMMCFIYTGKAP--------------NLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENA  128 (145)
T ss_dssp             ECSSCHHHHHHHHHHHHHSCCT--------------TGGGTHHHHHHHHHHTTCHHHHHHHHCC----------
T ss_pred             ecCCCHHHHHHHHHhhccCccC--------------CcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHH
Confidence            46788888888888887 4321              13456789999999999999999999998876654443

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=96.29  E-value=0.0089  Score=41.24  Aligned_cols=50  Identities=8%  Similarity=0.008  Sum_probs=40.4

Q ss_pred             CCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 045340            2 DNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLA   65 (136)
Q Consensus         2 ~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA   65 (136)
                      ++++..+++.+++|+. -.-.              ++.+.+.+|+.||++|++++|.+.|.+.+.
T Consensus        74 ~~~~~~~f~~ll~~~Ytg~~~--------------~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~  124 (127)
T 1r29_A           74 PEINPEGFNILLDFMYTSRLN--------------LREGNIMAVMATAMYLQMEHVVDTCRKFIK  124 (127)
T ss_dssp             TTSCHHHHHHHHHHHHHSCCC--------------CCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHcCCCcC--------------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            6788888888888887 3221              145668899999999999999999998875

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=96.12  E-value=0.0042  Score=42.70  Aligned_cols=51  Identities=10%  Similarity=0.058  Sum_probs=39.1

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLA   65 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA   65 (136)
                      +++++.++++.+++|+. -.-.              ++.+.+.+|+.||++|++++|.+.|++.+.
T Consensus        64 l~~~~~~~f~~ll~~iYtg~~~--------------~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~  115 (119)
T 3b84_A           64 LPAGFAEIFGLLLDFFYTGHLA--------------LTSGNRDQVLLAARELRVPEAVELCQSFKP  115 (119)
T ss_dssp             ECGGGHHHHHHHHHHHHHSCCC--------------CCTTTHHHHHHHHHHTTCHHHHHHHHHCC-
T ss_pred             eCCCCHHHHHHHHHHHcCCCCc--------------cCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            36778888888888887 3221              134557899999999999999999998764

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=96.03  E-value=0.006  Score=42.95  Aligned_cols=54  Identities=9%  Similarity=0.033  Sum_probs=41.5

Q ss_pred             CCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcC
Q 045340            3 NNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKN   70 (136)
Q Consensus         3 nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikg   70 (136)
                      +|+...++.+++|+. -.-             . ++.+.+.+|+.||++|++++|.+.|++.+...+..
T Consensus        81 ~v~~~~~~~lL~~~Ytg~~-------------~-i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~  135 (138)
T 2z8h_A           81 EVTVKGFEPLIQFAYTAKL-------------I-LSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD  135 (138)
T ss_dssp             TSCHHHHHHHHHHHHHSCC-------------C-CCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred             CCCHHHHHHHHHHhcCCCc-------------c-cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence            677777777887777 321             1 24556899999999999999999999988766543

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=95.90  E-value=0.0091  Score=42.60  Aligned_cols=50  Identities=12%  Similarity=0.100  Sum_probs=38.2

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHH
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETL   64 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~I   64 (136)
                      +++++..+++.+++|+. -.-             . ++.+.+.+|+.||++|++++|.+.|++.+
T Consensus        93 l~~v~~~~f~~lL~fiYtg~~-------------~-i~~~~v~~ll~~A~~l~i~~L~~~C~~~L  143 (144)
T 2ppi_A           93 LEGISVMVMREILDYIFSGQI-------------R-LNEDTIQDVVQAADLLLLTDLKTLCCEFL  143 (144)
T ss_dssp             CCSSCHHHHHHHHHHHTTSCC-------------C-CCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             eCCCCHHHHHHHHHHHhCCCC-------------C-CCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence            46677788888888876 221             1 24567899999999999999999998653

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=95.61  E-value=0.019  Score=44.65  Aligned_cols=60  Identities=12%  Similarity=0.094  Sum_probs=42.5

Q ss_pred             CCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHH
Q 045340            3 NNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYI   76 (136)
Q Consensus         3 nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEI   76 (136)
                      +|+..+++.+++|+. ..-             . ++.+.+.+|+.||++|++++|.+.|++.+...+...+.-.+
T Consensus        87 ~v~~~~f~~ll~~~Ytg~~-------------~-i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i  147 (279)
T 3i3n_A           87 GPEPDTVEAVIEYMYTGRI-------------R-VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAI  147 (279)
T ss_dssp             CSCHHHHHHHHHHHHHSEE-------------E-EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHH
T ss_pred             CCCHHHHHHHHHhhCcCCc-------------c-cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHH
Confidence            788899999999987 321             1 13445777888888888888888888777776666555444

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=95.07  E-value=0.049  Score=42.84  Aligned_cols=62  Identities=6%  Similarity=0.012  Sum_probs=43.6

Q ss_pred             CCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHH
Q 045340            2 DNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIR   77 (136)
Q Consensus         2 ~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR   77 (136)
                      ++++..+++.+++|+. ..-             . ++.+.+.+|+.||+++++++|...|.+.+...+...+.-++-
T Consensus       219 ~~~~~~~f~~~L~~iYt~~~-------------~-~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l  281 (312)
T 3hqi_A          219 NDVEPEVFKEMMCFIYTGKA-------------P-NLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL  281 (312)
T ss_dssp             CSSCHHHHHHHHHHHHHSCC-------------T-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHH
T ss_pred             cCCCHHHHHHHHHhhcCCCC-------------C-ChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            4555555666666555 221             1 134678999999999999999999999998777666665543

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=94.86  E-value=0.0054  Score=42.65  Aligned_cols=50  Identities=14%  Similarity=0.132  Sum_probs=34.6

Q ss_pred             CCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 045340            3 NNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLAN   66 (136)
Q Consensus         3 nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~   66 (136)
                      +++.++++.+++|+. ..-             . ++.+.+.+|+.||++|++++|.+.|++.+..
T Consensus        76 ~~~~~~f~~ll~~iYtg~~-------------~-i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~  126 (129)
T 3ga1_A           76 AVQPQSFQQILSFCYTGRL-------------S-MNVGDQDLLMYTAGFLQIQEIMEKGTEFFLK  126 (129)
T ss_dssp             TCCHHHHHHHHHHHHHSEE-------------E-CCTTTHHHHHHHHHHTTBTTSSCC-------
T ss_pred             CCCHHHHHHHHHHHhCCcc-------------c-cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            788888888888887 321             1 2455688999999999999999999988753

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=93.27  E-value=0.11  Score=35.45  Aligned_cols=46  Identities=11%  Similarity=0.044  Sum_probs=34.9

Q ss_pred             CCCCcHHHHHHHHHhhcCCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHH
Q 045340            1 MDNNYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLD   58 (136)
Q Consensus         1 i~nV~s~~L~kViewC~H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~   58 (136)
                      +++++..+++.+++|+....-+           . ++.+.+.+|+.||++|+|++|.+
T Consensus        70 l~~~~~~~f~~~l~~~Ytg~~~-----------~-~~~~~~~~ll~~A~~l~i~~L~~  115 (116)
T 3fkc_A           70 LSFIRAEIFAEILNYIYSSKIV-----------R-VRSDLLDELIKSGQLLGVKFIAA  115 (116)
T ss_dssp             ECSSCHHHHHHHHHHHTTSCCC-----------S-CCHHHHHHHHHHHHHHTCHHHHT
T ss_pred             eCCCCHHHHHHHHHhhcCCCcC-----------C-CCHHHHHHHHHHHHHhCccccCc
Confidence            4678889999999998721110           1 25677889999999999999865

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=93.07  E-value=0.0054  Score=42.24  Aligned_cols=48  Identities=13%  Similarity=0.081  Sum_probs=34.9

Q ss_pred             CC-CcHHHHHHHHHhhcCCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHH
Q 045340            2 DN-NYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTE   62 (136)
Q Consensus         2 ~n-V~s~~L~kViewC~H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~   62 (136)
                      ++ ++..+++.+++|+....            +. ++.+.+.+|+.||++|++++|.+.|++
T Consensus        75 ~~~~~~~~f~~~l~~iYtg~------------~~-~~~~~v~~ll~~A~~l~i~~L~~~C~~  123 (125)
T 3ohu_A           75 PEEVTARGFGPLLQFAYTAK------------LL-LSRENIREVIRCAEFLRMHNLEDSCFS  123 (125)
T ss_dssp             CTTCCHHHHHHHHHHHTTSE------------EE-ECTTTHHHHHHHHHHHTBSSCTTSSCC
T ss_pred             CCCCCHHHHHHHHHhHcCCc------------eE-ECHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            44 77777777777776211            11 255678999999999999999887764

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=90.54  E-value=0.022  Score=39.30  Aligned_cols=48  Identities=8%  Similarity=0.021  Sum_probs=34.9

Q ss_pred             CCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHH
Q 045340            3 NNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETL   64 (136)
Q Consensus         3 nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~I   64 (136)
                      +|+.+.++.+++|+. -.-             . ++.+.+.+|+.||++|++++|.+.|++.+
T Consensus        74 ~v~~~~f~~lL~~iYtg~~-------------~-i~~~~v~~ll~~A~~~~~~~L~~~C~~~l  122 (124)
T 2ihc_A           74 EVTVKGFEPLIQFAYTAKL-------------I-LSKENVDEVCKCVEFLSVHNIEESCFQFL  122 (124)
T ss_dssp             TSCHHHHHHHHHHHHHSEE-------------E-EETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred             CcCHHHHHHHHHHhcCCCc-------------c-cCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            566666666666665 211             1 24566899999999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1nexa1	70	a.157.1.1 (A:116-185) Centromere DNA-binding prote	3e-18
d1fs1b1	55	a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45,	2e-11

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 70

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.2 bits (175), Expect = 3e-18
 Identities = 27/58 (46%), Positives = 37/58 (63%)

Query: 38 NDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAAR 95
           + L E++L ANYLNI  +LD   + +A  I+ +S E IR+ F I N+F PEEE A R
Sbjct: 13 QEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR 70

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (129), Expect = 2e-11
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 38 NDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFF 80
             L E++L ANYL+I  +LD   +T+AN IK K+ E IRK F
Sbjct: 12 QGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	99.96
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	99.88
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	99.31
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	98.29
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	98.1
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	96.88
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	96.49
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	85.29

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.1e-30  Score=168.88  Aligned_cols=65  Identities=46%  Similarity=0.627  Sum_probs=63.1

Q ss_pred             HhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHh
Q 045340           30 VEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEEEAAR   95 (136)
Q Consensus        30 ~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fgI~~D~T~EEee~ir   95 (136)
                      ++|+++ |.++||+|+.|||||+|++|++++|++||++|+||||+|||++|||++|+||||++++|
T Consensus         6 ~~F~~~-d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f~I~~D~t~eEe~~ir   70 (70)
T d1nexa1           6 REFLKV-DQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR   70 (70)
T ss_dssp             HHHTCS-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHTCC
T ss_pred             HHHHhc-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHhcC
Confidence            789986 99999999999999999999999999999999999999999999999999999999886

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.1e-23  Score=131.49  Aligned_cols=51  Identities=47%  Similarity=0.591  Sum_probs=49.5

Q ss_pred             HhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHcC
Q 045340           30 VEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFR   81 (136)
Q Consensus        30 ~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fg   81 (136)
                      ++|+++ |.++||+|+.|||||+|++|++++|++||++||||||||||++||
T Consensus         5 ~~F~~~-d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ikgKt~eeiR~~fn   55 (55)
T d1fs1b1           5 QEFLKV-DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN   55 (55)
T ss_dssp             HHHTCS-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred             HHHHHc-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence            689996 999999999999999999999999999999999999999999997

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=8.5e-14  Score=95.33  Aligned_cols=51  Identities=25%  Similarity=0.319  Sum_probs=41.0

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCC--CCchHHHhhccCCChhHHHHHHHhhhhhch
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSD--GTSEDMVEFGKGKSNDELKEMLLVANYLNI   53 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~--~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I   53 (136)
                      +++|+|.+|+||++||+ |++.+.  ....++.+| ++ +++.||+|+.|||||+|
T Consensus        46 l~~V~s~iL~kViey~~~h~~~~~~~~~~~~~~ef-dv-d~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          46 LKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF-EI-PTEMSLELLLAADYLSI   99 (99)
T ss_dssp             ETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC-CC-CHHHHHHHHHHHHHHCC
T ss_pred             cCCCChHHHHHHHHHHHHhhhCcCcccccccCCCC-CC-CHHHHHHHHHHHhhhCC
Confidence            58999999999999999 876542  122334566 65 99999999999999997

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.9e-12  Score=88.15  Aligned_cols=49  Identities=22%  Similarity=0.216  Sum_probs=38.1

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhc
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLN   52 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~   52 (136)
                      +|||+|++|+||++||+ |...+.. ..++.+| ++ +++.||+|+.||||||
T Consensus        46 L~nV~s~iL~kViey~~~h~~~~~~-~~~~~~f-di-~~~~l~eLi~AAnyLd   95 (96)
T d2c9wc1          46 FREIPSHVLSKVCMYFTYKVRYTNS-STEIPEF-PI-APEIALELLMAANFLD   95 (96)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHTC-----CCCCC-CC-CHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHhhccCcCC-cCCCCCC-cC-CHHHHHHHHHHHhhhc
Confidence            68999999999999999 7665431 1223445 65 9999999999999997

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=1.7e-07  Score=60.03  Aligned_cols=23  Identities=17%  Similarity=0.057  Sum_probs=21.3

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCC
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSD   23 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~   23 (136)
                      ++||+|.+|+||++||+ |+++|+
T Consensus        48 l~~V~s~iL~kVieyc~~H~~dp~   71 (72)
T d1nexa2          48 VPNVRSSVLQKVIEWAEHHRDSNF   71 (72)
T ss_dssp             CTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred             CCCcCHHHHHHHHHHHHHccCCCC
Confidence            68999999999999999 999875

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.9e-07  Score=56.29  Aligned_cols=21  Identities=19%  Similarity=0.262  Sum_probs=19.2

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCC
Q 045340            1 MDNNYSRWKSKGVRDCD-HSST   21 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~   21 (136)
                      +|||+|++|+||++||+ |+++
T Consensus        40 l~~V~s~iL~kVieyc~~H~~d   61 (61)
T d1fs1b2          40 LPNVNAAILKKVIQWCTHHKDD   61 (61)
T ss_dssp             CTTCCHHHHHHHHHHHHHHTTC
T ss_pred             cCCcCHHHHHHHHHHHHHccCC
Confidence            68999999999999999 8864

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.001  Score=45.11  Aligned_cols=50  Identities=14%  Similarity=0.139  Sum_probs=40.0

Q ss_pred             CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHH
Q 045340            1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETL   64 (136)
Q Consensus         1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~I   64 (136)
                      +++|++.+++.+++|+. -+-             . ++.+.+.+|+.||++|++++|.+.|++.+
T Consensus        67 ~~~v~~~~f~~ll~~~Ytg~i-------------~-l~~~~v~~ll~~A~~l~~~~L~~~C~~~L  117 (121)
T d1buoa_          67 LDFLSPKTFQQILEYAYTATL-------------Q-AKAEDLDDLLYAAEILEIEYLEEQCLKML  117 (121)
T ss_dssp             ECSSCHHHHHHHHHHHHHSCC-------------C-CCGGGHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHheEcccc-------------C-CcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            46788888888888887 321             1 25566889999999999999999999877

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0029  Score=42.34  Aligned_cols=49  Identities=8%  Similarity=0.013  Sum_probs=35.9

Q ss_pred             CCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHH
Q 045340            2 DNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETL   64 (136)
Q Consensus         2 ~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~I   64 (136)
                      ++|+++.++.+++|+. -.-             . ++.+.+.+++.||++|+|++|.+.|.+.+
T Consensus        70 ~~v~~~~f~~ll~~~Ytg~~-------------~-i~~~~v~~ll~~A~~l~i~~L~~~C~~~L  119 (122)
T d1r29a_          70 PEINPEGFNILLDFMYTSRL-------------N-LREGNIMAVMATAMYLQMEHVVDTCRKFI  119 (122)
T ss_dssp             TTSCHHHHHHHHHHHHHSCC-------------C-CCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHhhhcCCee-------------c-CchhhHHHHHHHHHHHCcHHHHHHHHHHH
Confidence            4566666666666665 221             1 25667899999999999999999998876

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.29  E-value=0.35  Score=28.25  Aligned_cols=39  Identities=8%  Similarity=0.279  Sum_probs=26.1

Q ss_pred             hhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHcC
Q 045340           38 NDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFR   81 (136)
Q Consensus        38 ~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fg   81 (136)
                      ...+..++.|+.--+=..+     ..||.-+.|||++|++.+..
T Consensus         4 rrdF~~Fi~a~ekyGR~d~-----~~Ia~e~~~Kt~eEV~~Y~~   42 (52)
T d1ofcx1           4 KRDFNQFIKANEKYGRDDI-----DNIAKDVEGKTPEEVIEYNA   42 (52)
T ss_dssp             HHHHHHHHHHHHHHCTTCH-----HHHTTSSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhH-----HHHHHHhcCCCHHHHHHHHH
Confidence            3445555665555544433     56788889999999998753