Citrus Sinensis ID: 045399

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800--
MHQGDQTVLSLRPGGGRGGAGGGGGGNSRLFSGSRFDSGAGAAAPSLAFGSFSSDLPFLRPHGGAPPSATGDSRFEGRERVRYTREQLLQLREAAVIDDDILKIKREFESEVFGEEQIWGRAENNPPNQPQSRYSEPDNRDWRRPAQSFPSGEFNRDNREFAGRYDFRQPDGSQFNRQDQLNYQFSRVQMSSNPGGGPAPALIKAEVPWSAKRGNLSEKERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADKLREEVRQMTAPDQESERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLRANNWVPRREEVTAKTITEIHSEAEKNLGLRPGATASIRNSRGMISGAPGVTGPGGMPITRPGSGGMMPGMPGTRKMPGMPGIDNDNWEFPRQRSIPRGDGSGMQPGGRVQSPMINKSSSLNTRLLPQGTGGPMGARSALLQGSGTPPPRPSNFIPGPEPTSQLPIPTKPVTSSPVPAVVEKPLRPAGKLNLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARDIGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLDAALRIISCSPGQNILDSQASDIEACQSLL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcc
ccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHccccHHHHcccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccEcHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHc
mhqgdqtvlslrpgggrggaggggggnsrlfsgsrfdsgagaaapslafgsfssdlpflrphggappsatgdsrfegreRVRYTREQLLQLREAAVIDDDILKIKREfesevfgeeqiwgraennppnqpqsrysepdnrdwrrpaqsfpsgefnrdnrefagrydfrqpdgsqfnrqdqlnYQFSRVqmssnpgggpapalikaevpwsakrgnlseKERVLKTVKGILNKLTPEKFDLLKgqlidsgitSADILKEVISLIFDKavleptfcpMYAQLCSdlneklppfpsdepggkeitFKRVLLNICQEAFEGADKLREEVRQmtapdqeserrDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELlghdsstcpaeeNVEAICQFVNTIgkqldegpksrrinDMYFSRLKelttnpqlaprlRFMVRDVLdlrannwvprreeVTAKTITEIHSEAEknlglrpgatasirnsrgmisgapgvtgpggmpitrpgsggmmpgmpgtrkmpgmpgidndnwefprqrsiprgdgsgmqpggrvqspminkssslntrllpqgtggpmgarsallqgsgtppprpsnfipgpeptsqlpiptkpvtsspvpavvekplrpagklNLDELCRKTISLLEEYFNIRVLEEALMCVEelkspgyhpeVVKEAISLAleknppcvdpvTKLLEYLFTQKVITARDIGTGCLLFGALmddvgidlprapnnfGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLDAALRIIscspgqnildsqaSDIEACQSLL
MHQGDQTVLSLRPGGGRGGAGGGGGGNSRLFSGSRFDSGAGAAAPSLAFGSFSSDLPFLRPHggappsatgdsrfegreRVRYTREQllqlreaavidddilKIKREFESEVfgeeqiwgraennppnqpqsrysepdnrdwrrpaqsfpsgefnrdnREFAGRYDFRQPDGSQFNRQDQLNYQFSRVQMSSNPGGGPAPALIKAEVpwsakrgnlsekervLKTVKGilnkltpekfdllkgqlIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADKLREEVRqmtapdqeserrdkerlvklrtlgnirligellkqkmvpEKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTigkqldegpksrRINDMYFSRLKelttnpqlaprlrFMVRDVLdlrannwvprreevtaktiteihseaeknlglrpgATASIRNSRGmisgapgvtgpggMPITRPGSGGMMPGMPGTRKMPGMPGIDNDNWEFPRQRSIPRGDGSGMQPGGRVQSPMINKSSSLNTRLLPQGTGGPMGARSALLQGSGTPPPRPSNFIPGPEPTSQLPIPTKPVTSSPVPAVVEkplrpagklnlDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARDIGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLDAALRIISCSPGQNILDSQASDIEACQSLL
MHQGDQTVlslrpgggrggaggggggnsrlfsgsrFDSGAGAAAPSLAFGSFSSDLPFLRPHGGAPPSATGDSRFEGRERVRYTREQLLQLREAAVIDDDILKIKREFESEVFGEEQIWGRAENNPPNQPQSRYSEPDNRDWRRPAQSFPSGEFNRDNREFAGRYDFRQPDGSQFNRQDQLNYQFSRVQMSSNPGGGPAPALIKAEVPWSAKRGNLSEKERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADKLREEVRQMTAPDQESERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLRANNWVPRREEVTAKTITEIHSEAEKNLGLRPGATASIRNSRGMISGAPGVTGPGGMPITRpgsggmmpgmpgtrkmpgmpgIDNDNWEFPRQRSIPRGDGSGMQPGGRVQSPMINKSSSLNTRLLPQGTGGPMGARSALLQGSGTPPPRPSNFIPGPEPTSQLPIPTKPVTSSPVPAVVEKPLRPAGKLNLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARDIGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLDAALRIISCSPGQNILDSQASDIEACQSLL
*********************************************************************************RYTREQLLQLREAAVIDDDILKIKREFESEVFGEEQIW*****************************************************************************************************RVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLN**************EITFKRVLLNICQEAFE**************************LVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLD******RINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLRANNWVPRREEVTAKTIT*************************************************************************************************************************************************************************GKLNLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARDIGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLDAALRIISCSPG******************
*********************************************************************************RYTREQLLQLREAA********************************************************************************************************************************KTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNEKLP**********EITFKRVLLNICQEAFEGADKL*****************DKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELT***QLAPRLRFMVRDVLDLRANNWV**********************************************************************************************************************************************************************************RPAGKLNLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARDIGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQ**********Y**SVLDAALRIISC********SQASDIEACQSLL
MHQGDQTVLSLRPGGGRGGAGGGGGGNSRLFSGSRFDSGAGAAAPSLAFGSFSSDLPFLRPHGGAPPSATGDSRFEGRERVRYTREQLLQLREAAVIDDDILKIKREFESEVFGEEQIWGRAEN*****************WRRPAQSFPSGEFNRDNREFAGRYDFRQPDGSQFNRQDQLNYQFSRVQMSSNPGGGPAPALIKAEVPWSAKRGNLSEKERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADKLREEV**************KERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLRANNWVPRREEVTAKTITEIHSEAEKNLGLRPGATASIRNSRGMISGAPGVTGPGGMPITRPGSGGMMPGMPGTRKMPGMPGIDNDNWEFPRQRSIPRGDGSGMQPGGRVQSPMINKSSSLNTRLLPQGTGGPMGARSALLQGSGTPPPRPSNFIPGPEPTSQLPIPTKPVTSSPVPAVVEKPLRPAGKLNLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARDIGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLDAALRIISCSPGQNILDSQASDIEACQSLL
*****QTVLS*************************************************************DSRFEGRERVRYTREQLLQLREAAVIDDDILKIKREFESEVFGEEQ***************************************************************************************************SEKERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADKLREEVRQMT*PDQESERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLRANNWVPRREEVTAKTITEIHSEAEKN*******************************************************************************************************************************************************************NLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARDIGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLDAALRIISCSPGQNILDSQASDIEACQSLL
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHQGDQTVLSLRPGGGRGGAGGGGGGNSRLFSGSRFDSGAGAAAPSLAFGSFSSDLPFLRPHGGAPPSATGDSRFEGRERVRYTREQLLQLREAAVIDDDILKIKREFESEVFGEEQIWGRAENNPPNQPQSRYSEPDNRDWRRPAQSFPSGEFNRDNREFAGRYDFRQPDGSQFNRQDQLNYQFSRVQMSSNPGGGPAPALIKAEVPWSAKRGNLSEKERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADKLREEVRQMTAPDQESERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLRANNWVPRREEVTAKTITEIHSEAEKNLGLRPGATASIRNSRGMISGAPGVTGPGGMPITRPGSGGMMPGMPGTRKMPGMPGIDNDNWEFPRQRSIPRGDGSGMQPGGRVQSPMINKSSSLNTRLLPQGTGGPMGARSALLQGSGTPPPRPSNFIPGPEPTSQLPIPTKPVTSSPVPAVVEKPLRPAGKLNLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARDIGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLDAALRIISCSPGQNILDSQASDIEACQSLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query802 2.2.26 [Sep-21-2011]
Q93ZT6780 Eukaryotic translation in yes no 0.953 0.980 0.633 0.0
Q03387788 Eukaryotic translation in N/A no 0.922 0.939 0.595 0.0
Q84PB3793 Eukaryotic translation in yes no 0.907 0.918 0.619 0.0
Q41583787 Eukaryotic translation in N/A no 0.922 0.940 0.591 0.0
Q6K641780 Eukaryotic translation in no no 0.915 0.941 0.583 0.0
O82233747 Eukaryotic translation in no no 0.908 0.975 0.559 0.0
G5CEW61488 Eukaryotic translation in N/A no 0.684 0.368 0.309 9e-62
B9FXV51792 Eukaryotic translation in no no 0.700 0.313 0.310 1e-61
Q5Z5Q3711 Zinc finger CCCH domain-c no no 0.370 0.417 0.452 2e-61
Q76E231727 Eukaryotic translation in no no 0.370 0.171 0.388 4e-47
>sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1 OS=Arabidopsis thaliana GN=EIF(ISO)4G1 PE=1 SV=1 Back     alignment and function desciption
 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/816 (63%), Positives = 622/816 (76%), Gaps = 51/816 (6%)

Query: 1   MHQGDQTVLSLRPGGGRGGAGGGGGGNSRLFSGSRFDSGAGAAAPSLAFGSFSSDLPFLR 60
           M QGDQTVLSLRPGGGRG               +R    + +++        SSDLP LR
Sbjct: 1   MQQGDQTVLSLRPGGGRG---------------NRLFGSSSSSSSLSFGSLSSSDLPLLR 45

Query: 61  PHGGAPPSAT----GDSRFEGRERVRYTREQLLQLREAAVIDDDILKIKREFESEVFGEE 116
           PHGGAP S+     GDSRF+GRERV+YTREQLL+L+E   + D+IL+++RE  +E+FGEE
Sbjct: 46  PHGGAPASSFPFKGGDSRFDGRERVKYTREQLLELKETTQLSDEILRVQRETAAELFGEE 105

Query: 117 QIWGRAE----NNPPNQPQSRYSEPDNRDWR-RPAQSFPSGEFNRDNREFAGRYDFRQPD 171
             W R E    N  P Q  SR+SEPD+RDWR R  Q  PSGE  R         D R  +
Sbjct: 106 GTWARGESVVSNLVPVQSASRFSEPDSRDWRSRSTQPPPSGE-ERSWDNLREAKDSRYVE 164

Query: 172 GSQFNRQDQLNYQFSRVQMSSNPGGGPAPALIKAEVPWSAKRGNLSEKERVLKTVKGILN 231
            SQ+NRQDQ N QFSR  +SSN GGGPAP L+KAEVPWSA+RGNLSE +RVLKTVKGILN
Sbjct: 165 ASQYNRQDQPNSQFSRANISSNQGGGPAPVLVKAEVPWSARRGNLSENDRVLKTVKGILN 224

Query: 232 KLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPF 291
           KLTPEK+DLLKGQLI+SGITSADILK VI+LIFDKAVLEPTFCPMYA+LCSD+N++LP F
Sbjct: 225 KLTPEKYDLLKGQLIESGITSADILKGVITLIFDKAVLEPTFCPMYAKLCSDINDQLPTF 284

Query: 292 PSDEPGGKEITFKRVLLNICQEAFEGADKLREEVRQMTAPDQESERRDKERLVKLRTLGN 351
           P  EPG KEITFKRVLLNICQEAFEGA +LREE+RQM+APDQE+ER DKE+L+KL+TLGN
Sbjct: 285 PPAEPGDKEITFKRVLLNICQEAFEGASQLREELRQMSAPDQEAERNDKEKLLKLKTLGN 344

Query: 352 IRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLDEGPKSR 411
           IRLIGELLKQKMVPEKIVHHIVQELLG D   CPAEENVEAIC F  TIGKQLD   KS+
Sbjct: 345 IRLIGELLKQKMVPEKIVHHIVQELLGADEKVCPAEENVEAICHFFKTIGKQLDGNVKSK 404

Query: 412 RINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLRANNWVPRREEVTAKTITEIHSEAEKN 471
           RIND+YF RL+ L+ NPQL  RLRFMV++++D+R+N WVPRREE+ A+TITEIH+EAEKN
Sbjct: 405 RINDVYFKRLQALSKNPQLELRLRFMVQNIIDMRSNGWVPRREEMKARTITEIHTEAEKN 464

Query: 472 LGLRPGATASIRNSRGMISG----APGVTGPGGMPITRPGSGGMMPGMPGTRKMPGMPGI 527
           LGLRPGATA++R  RGM+S     +PG   PGG    RPG+GG+MPGMPGTR+MPGMPG+
Sbjct: 465 LGLRPGATANMR--RGMVSSGGPVSPGPVYPGG----RPGAGGLMPGMPGTRRMPGMPGV 518

Query: 528 DNDNWEFPRQRSIPRGDGSGMQPGGRVQSPMINKSSSLNTRLLPQGTGGPM-GARSALLQ 586
           DNDNWE PR RS+ R DG      G + SP ++KS+S+NTRLLPQG+ G M G  SALLQ
Sbjct: 519 DNDNWEVPRTRSMSRRDGP-----GPLHSPAVSKSASMNTRLLPQGSSGIMSGKTSALLQ 573

Query: 587 GSGTPPPRPSNFIPGPEPTSQLPIPTKPVTSSPVPAVVEKPLRPAGKLNLDELCRKTISL 646
           GSG+   RP         T     P + V    VP  VEKP     KL+ + L RKT SL
Sbjct: 574 GSGS-VSRPV--------TVSAERPAQSVAPLTVPVPVEKPQPSGPKLSEEVLQRKTKSL 624

Query: 647 LEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKV 706
           LEEYFN+R+L EAL CVEEL  P YHPE VKEAISL+LEK+PP V+P+  LLEYL ++KV
Sbjct: 625 LEEYFNVRLLGEALQCVEELGLPSYHPEFVKEAISLSLEKSPPVVEPIATLLEYLLSKKV 684

Query: 707 ITARDIGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKMEEEM 766
           +  +D+ TG LL+GA++DD+GIDLP+APNNFGEI+GKLILAGG+DFK+V+EI+ KME++ 
Sbjct: 685 VAPKDLETGFLLYGAMLDDIGIDLPKAPNNFGEIVGKLILAGGVDFKLVREIIGKMEDDR 744

Query: 767 YRKSVLDAALRIISCSP-GQNILDSQASDIEACQSL 801
           ++K V+DAA+RI+  S  G+++L SQA+DIEAC++L
Sbjct: 745 FQKMVVDAAVRIVESSEQGKSLLASQAADIEACRNL 780
Plays a role in the accumulation of some potyvirus during viral infection.
Arabidopsis thaliana (taxid: 3702)
>sp|Q03387|IF4G1_WHEAT Eukaryotic translation initiation factor isoform 4G-1 OS=Triticum aestivum PE=1 SV=2 Back     alignment and function description
>sp|Q84PB3|IF4G1_ORYSJ Eukaryotic translation initiation factor isoform 4G-1 OS=Oryza sativa subsp. japonica GN=Os04g0499300 PE=2 SV=2 Back     alignment and function description
>sp|Q41583|IF4G2_WHEAT Eukaryotic translation initiation factor isoform 4G-2 OS=Triticum aestivum PE=2 SV=1 Back     alignment and function description
>sp|Q6K641|IF4G2_ORYSJ Eukaryotic translation initiation factor isoform 4G-2 OS=Oryza sativa subsp. japonica GN=Os02g0611500 PE=2 SV=1 Back     alignment and function description
>sp|O82233|IF4G2_ARATH Eukaryotic translation initiation factor isoform 4G-2 OS=Arabidopsis thaliana GN=EIF(ISO)4G2 PE=1 SV=1 Back     alignment and function description
>sp|G5CEW6|IF4G_WHEAT Eukaryotic translation initiation factor 4G OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|B9FXV5|IF4G_ORYSJ Eukaryotic translation initiation factor 4G OS=Oryza sativa subsp. japonica GN=Os07g0555200 PE=2 SV=2 Back     alignment and function description
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica GN=Os06g0520600 PE=2 SV=1 Back     alignment and function description
>sp|Q76E23|IF4G_ARATH Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query802
224142359793 predicted protein [Populus trichocarpa] 0.978 0.989 0.744 0.0
224091819798 predicted protein [Populus trichocarpa] 0.982 0.987 0.730 0.0
359484894795 PREDICTED: eukaryotic initiation factor 0.978 0.987 0.737 0.0
147833057794 hypothetical protein VITISV_013807 [Viti 0.977 0.987 0.737 0.0
359484892794 PREDICTED: eukaryotic initiation factor 0.977 0.987 0.737 0.0
356562555789 PREDICTED: eukaryotic initiation factor 0.973 0.989 0.726 0.0
356562557792 PREDICTED: eukaryotic initiation factor 0.973 0.986 0.722 0.0
356500679789 PREDICTED: eukaryotic initiation factor 0.970 0.986 0.722 0.0
309296913801 eukaryotic initiation factor iso4G [Cari 0.983 0.985 0.738 0.0
357480009779 Eukaryotic initiation factor iso-4F subu 0.955 0.983 0.680 0.0
>gi|224142359|ref|XP_002324526.1| predicted protein [Populus trichocarpa] gi|222865960|gb|EEF03091.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1184 bits (3062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/810 (74%), Positives = 684/810 (84%), Gaps = 25/810 (3%)

Query: 1   MHQGDQTVLSLRPGGGRGGAGGGGGGNSRLFSGSRFDSGAGAAAPSLAFGSFSSDLPFLR 60
           M QGDQTVLSLRPGGGRG         SRLF+  R +  + + + S++FG    DLP LR
Sbjct: 1   MQQGDQTVLSLRPGGGRG---------SRLFN-PRLEQSSSSTSSSISFG----DLPLLR 46

Query: 61  PHGGAPPSATGDSRFEGRERVRYTREQLLQLREAAVIDDDILKIKREFESEVFGEEQIWG 120
           PHGGA    TGD RFEGRERVRYTR+QLLQLREA VI D+ILKIK+E E+E+FGE+Q W 
Sbjct: 47  PHGGATSFKTGDLRFEGRERVRYTRDQLLQLREAVVIFDEILKIKQEIEAELFGEDQSWS 106

Query: 121 RAENNPPNQPQSRYSEPDNRDWR-RPAQSFPSGEFN-----RDNREFAGRYDFRQPDGSQ 174
           R E NPP Q Q RYSEPDNRDWR R AQ  PSGE       R+NR+F GRYD RQ +G+Q
Sbjct: 107 RGETNPPTQSQIRYSEPDNRDWRGRSAQFSPSGEERSRDSIRENRDFGGRYDSRQQEGNQ 166

Query: 175 FNRQDQLNYQFSRVQMSSNPGGGPAPALIKAEVPWSAKRGNLSEKERVLKTVKGILNKLT 234
            NRQDQLN QF+R Q+SS+ GG PAPAL+KAEVPWS +R NLSEKERVLKTVKGILNKLT
Sbjct: 167 SNRQDQLNSQFARAQISSHQGG-PAPALVKAEVPWSTRRVNLSEKERVLKTVKGILNKLT 225

Query: 235 PEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSD 294
           PEKFD+LKGQLIDSGITS DILK VISLIFDKAVLEPTFCPMYAQLCSDLNEKLP FPSD
Sbjct: 226 PEKFDVLKGQLIDSGITSTDILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPSFPSD 285

Query: 295 EPGGKEITFKRVLLNICQEAFEGADKLREEVRQMTAPDQESERRDKERLVKLRTLGNIRL 354
           EPGGKEITFKRVLLNICQEAFEGADKLREE+RQMTAP+QE ERRDKE+LVKLRTLGN+RL
Sbjct: 286 EPGGKEITFKRVLLNICQEAFEGADKLREELRQMTAPEQELERRDKEKLVKLRTLGNMRL 345

Query: 355 IGELLKQKMVPEKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLDEGPKSRRIN 414
           IGELLKQ MVPEKIVHHIVQELLG D+  CPAEE+VEAICQF NTIGKQLDE PKSRRIN
Sbjct: 346 IGELLKQSMVPEKIVHHIVQELLGPDNKGCPAEESVEAICQFFNTIGKQLDESPKSRRIN 405

Query: 415 DMYFSRLKELTTNPQLAPRLRFMVRDVLDLRANNWVPRREEVTAKTITEIHSEAEKNLGL 474
           D+YF RLKEL +NPQLAPRL+FMVR VLDLR NNW+PRREEV AKTITEIHSEAEK LGL
Sbjct: 406 DVYFGRLKELASNPQLAPRLKFMVRGVLDLRMNNWIPRREEVKAKTITEIHSEAEKTLGL 465

Query: 475 RPGATASIRNSRGMISGAPGVTGPGGMPITRPGSGGMMPGMPGTRKMPGMPGIDNDNWEF 534
           RPGATASIRN+RG+IS APG TGPGG PI RPG+GGMMPGMPGTR+MPGMPGIDNDN E 
Sbjct: 466 RPGATASIRNNRGLISTAPGTTGPGGFPINRPGTGGMMPGMPGTRRMPGMPGIDNDNREI 525

Query: 535 PRQRSIPRGDGSGMQPGGRVQSPMINKSSSLNTRLLPQGTGGPMGAR-SALLQGSGTPPP 593
           PR R +PRGDG  MQ GGRVQSPM NK SSLNTRLLP+G+GG +G R SALL GSG PP 
Sbjct: 526 PRNRPMPRGDGP-MQLGGRVQSPMFNK-SSLNTRLLPEGSGGFIGGRSSALLHGSGGPPS 583

Query: 594 RPSNFIPGPEPTSQLPIPTKPVTSSPVPAVVEKPLRPAGKLNLDELCRKTISLLEEYFNI 653
           RPSN   G EP +Q  +P+K + +  VP V E+P+  A ++N DEL RKT+SLL+EYF++
Sbjct: 584 RPSNSGFGAEPPAQASLPSKTLPAPSVPPVSERPVVSAARVNPDELKRKTVSLLKEYFSV 643

Query: 654 RVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARDIG 713
            +L+EAL CVEELKSPGYHPEVVKEAI +ALE NPPCV+PV KLLEYLF++KV+TA+DIG
Sbjct: 644 LLLDEALQCVEELKSPGYHPEVVKEAIFIALEANPPCVEPVAKLLEYLFSKKVLTAKDIG 703

Query: 714 TGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLD 773
           TGCLL+G+++DD+GIDLP+APNNFGEIIGKL+L GGLDFK+V E+LKKME++MYR+++ D
Sbjct: 704 TGCLLYGSMLDDIGIDLPKAPNNFGEIIGKLVLVGGLDFKMVIEVLKKMEDDMYRRAMFD 763

Query: 774 AALRIISCSP-GQNILDSQASDIEACQSLL 802
           AA+R+I  SP GQ +LD+QAS IEAC+SL 
Sbjct: 764 AAIRVIISSPDGQLVLDTQASAIEACRSLF 793

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224091819|ref|XP_002309358.1| predicted protein [Populus trichocarpa] gi|222855334|gb|EEE92881.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359484894|ref|XP_003633181.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147833057|emb|CAN70546.1| hypothetical protein VITISV_013807 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484892|ref|XP_002277218.2| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356562555|ref|XP_003549535.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356562557|ref|XP_003549536.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356500679|ref|XP_003519159.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Glycine max] Back     alignment and taxonomy information
>gi|309296913|gb|ADO64264.1| eukaryotic initiation factor iso4G [Carica papaya] Back     alignment and taxonomy information
>gi|357480009|ref|XP_003610290.1| Eukaryotic initiation factor iso-4F subunit p82-34 [Medicago truncatula] gi|355511345|gb|AES92487.1| Eukaryotic initiation factor iso-4F subunit p82-34 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query802
TAIR|locus:2174353780 eIFiso4G1 "AT5G57870" [Arabido 0.922 0.948 0.631 2e-246
UNIPROTKB|Q1MSJ1793 eif(iso)4g "Putative eukaryoti 0.918 0.929 0.593 1.1e-222
UNIPROTKB|Q1MSJ4793 eif(iso)4g "Putative eukaryoti 0.918 0.929 0.593 1.4e-222
UNIPROTKB|Q1MSJ0793 eif(iso)4g "Putative eukaryoti 0.918 0.929 0.591 2.9e-222
UNIPROTKB|Q1MSJ3793 eif(iso)4g "Putative eukaryoti 0.918 0.929 0.591 3.7e-222
UNIPROTKB|Q1MSJ2790 eif(iso)4g "Putative eukaryoti 0.915 0.929 0.587 2.7e-219
TAIR|locus:2061370747 eIFiso4G2 "AT2G24050" [Arabido 0.781 0.839 0.596 1.5e-214
TAIR|locus:2131919263 AT4G30680 "AT4G30680" [Arabido 0.307 0.939 0.485 2.5e-58
TAIR|locus:20819271727 EIF4G "AT3G60240" [Arabidopsis 0.357 0.166 0.409 5.9e-57
ZFIN|ZDB-GENE-070112-702 1592 zgc:158450 "zgc:158450" [Danio 0.300 0.151 0.402 7.8e-50
TAIR|locus:2174353 eIFiso4G1 "AT5G57870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2374 (840.7 bits), Expect = 2.0e-246, P = 2.0e-246
 Identities = 493/781 (63%), Positives = 599/781 (76%)

Query:    39 GAGAAAPSLAFGSFSS-DLPFLRPHGGAPPSAT----GDSRFEGRERVRYTREQLLQLRE 93
             G+ +++ SL+FGS SS DLP LRPHGGAP S+     GDSRF+GRERV+YTREQLL+L+E
Sbjct:    23 GSSSSSSSLSFGSLSSSDLPLLRPHGGAPASSFPFKGGDSRFDGRERVKYTREQLLELKE 82

Query:    94 AAVIDDDILKIKREFESEVFGEEQIWGRAE----NNPPNQPQSRYSEPDNRDWR-RPAQS 148
                + D+IL+++RE  +E+FGEE  W R E    N  P Q  SR+SEPD+RDWR R  Q 
Sbjct:    83 TTQLSDEILRVQRETAAELFGEEGTWARGESVVSNLVPVQSASRFSEPDSRDWRSRSTQP 142

Query:   149 FPSGEFNR-DNREFAGRYDFRQPDGSQFNRQDQLNYQFSRVQMSSNPGGGPAPALIKAEV 207
              PSGE    DN   A   D R  + SQ+NRQDQ N QFSR  +SSN GGGPAP L+KAEV
Sbjct:   143 PPSGEERSWDNLREAK--DSRYVEASQYNRQDQPNSQFSRANISSNQGGGPAPVLVKAEV 200

Query:   208 PWSAKRGNLSEKERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKA 267
             PWSA+RGNLSE +RVLKTVKGILNKLTPEK+DLLKGQLI+SGITSADILK VI+LIFDKA
Sbjct:   201 PWSARRGNLSENDRVLKTVKGILNKLTPEKYDLLKGQLIESGITSADILKGVITLIFDKA 260

Query:   268 VLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADKLREEVRQ 327
             VLEPTFCPMYA+LCSD+N++LP FP  EPG KEITFKRVLLNICQEAFEGA +LREE+RQ
Sbjct:   261 VLEPTFCPMYAKLCSDINDQLPTFPPAEPGDKEITFKRVLLNICQEAFEGASQLREELRQ 320

Query:   328 MTAPDQESERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPAE 387
             M+APDQE+ER DKE+L+KL+TLGNIRLIGELLKQKMVPEKIVHHIVQELLG D   CPAE
Sbjct:   321 MSAPDQEAERNDKEKLLKLKTLGNIRLIGELLKQKMVPEKIVHHIVQELLGADEKVCPAE 380

Query:   388 ENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLRAN 447
             ENVEAIC F  TIGKQLD   KS+RIND+YF RL+ L+ NPQL  RLRFMV++++D+R+N
Sbjct:   381 ENVEAICHFFKTIGKQLDGNVKSKRINDVYFKRLQALSKNPQLELRLRFMVQNIIDMRSN 440

Query:   448 NWVPRREEVTAKTITEIHSEAEKNLGLRPGATASIRNSRGMISG----APGVTGPGGMPI 503
              WVPRREE+ A+TITEIH+EAEKNLGLRPGATA++R  RGM+S     +PG   PGG P 
Sbjct:   441 GWVPRREEMKARTITEIHTEAEKNLGLRPGATANMR--RGMVSSGGPVSPGPVYPGGRP- 497

Query:   504 TRXXXXXXXXXXXXXXXXXXXXXIDNDNWEFPRQRSIPRGDGSGMQPGGRVQSPMINKSS 563
                                    +DNDNWE PR RS+ R DG G  P   + SP ++KS+
Sbjct:   498 ---GAGGLMPGMPGTRRMPGMPGVDNDNWEVPRTRSMSRRDGPG--P---LHSPAVSKSA 549

Query:   564 SLNTRLLPQGTGGPM-GARSALLQGSGTPPPRPSNFIPGPEPTSQLPIPTKPVTSSPVPA 622
             S+NTRLLPQG+ G M G  SALLQGSG+   RP   +    P   +     P+T  PVP 
Sbjct:   550 SMNTRLLPQGSSGIMSGKTSALLQGSGSVS-RPVT-VSAERPAQSVA----PLTV-PVP- 601

Query:   623 VVEKPLRPAG-KLNLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAIS 681
              VEKP +P+G KL+ + L RKT SLLEEYFN+R+L EAL CVEEL  P YHPE VKEAIS
Sbjct:   602 -VEKP-QPSGPKLSEEVLQRKTKSLLEEYFNVRLLGEALQCVEELGLPSYHPEFVKEAIS 659

Query:   682 LALEKNPPCVDPVTKLLEYLFTQKVITARDIGTGCLLFGALMDDVGIDLPRAPNNFGEII 741
             L+LEK+PP V+P+  LLEYL ++KV+  +D+ TG LL+GA++DD+GIDLP+APNNFGEI+
Sbjct:   660 LSLEKSPPVVEPIATLLEYLLSKKVVAPKDLETGFLLYGAMLDDIGIDLPKAPNNFGEIV 719

Query:   742 GKLILAGGLDFKVVQEILKKMEEEMYRKSVLDAALRIISCSP-GQNILDSQASDIEACQS 800
             GKLILAGG+DFK+V+EI+ KME++ ++K V+DAA+RI+  S  G+++L SQA+DIEAC++
Sbjct:   720 GKLILAGGVDFKLVREIIGKMEDDRFQKMVVDAAVRIVESSEQGKSLLASQAADIEACRN 779

Query:   801 L 801
             L
Sbjct:   780 L 780
GO:0003723 "RNA binding" evidence=ISS
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0006412 "translation" evidence=ISS
GO:0006413 "translational initiation" evidence=ISS
GO:0016070 "RNA metabolic process" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|Q1MSJ1 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ4 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ0 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ3 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q1MSJ2 eif(iso)4g "Putative eukaryotic translation initiation factor 4 gamma" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
TAIR|locus:2061370 eIFiso4G2 "AT2G24050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131919 AT4G30680 "AT4G30680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081927 EIF4G "AT3G60240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070112-702 zgc:158450 "zgc:158450" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q41583IF4G2_WHEATNo assigned EC number0.59120.92260.9402N/Ano
Q84PB3IF4G1_ORYSJNo assigned EC number0.61940.90770.9180yesno
Q93ZT6IF4G1_ARATHNo assigned EC number0.63350.95380.9807yesno
Q03387IF4G1_WHEATNo assigned EC number0.59560.92260.9390N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query802
pfam02854198 pfam02854, MIF4G, MIF4G domain 4e-53
smart00543200 smart00543, MIF4G, Middle domain of eukaryotic ini 1e-45
pfam02847113 pfam02847, MA3, MA3 domain 6e-31
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 2e-29
>gnl|CDD|217253 pfam02854, MIF4G, MIF4G domain Back     alignment and domain information 
 Score =  182 bits (464), Expect = 4e-53
 Identities = 79/229 (34%), Positives = 124/229 (54%), Gaps = 34/229 (14%)

Query: 223 LKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCS 282
           LK VKG+LNKL+P  F+ +  +L+   ++  ++LK ++ LIF+KAV EP F P YA+LC+
Sbjct: 1   LKKVKGLLNKLSPSNFEKIIDELLKLNMSDKNLLKYILELIFEKAVEEPNFIPAYARLCA 60

Query: 283 DLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADKLREEVRQMTAPDQESERRDKER 342
            LN K P             F  +LLN  QE FE                      ++ER
Sbjct: 61  GLNSKNP------------DFGELLLNRLQEEFEKGV------------------EEEER 90

Query: 343 LVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCP-AEENVEAICQFVNTIG 401
             + R LG +R +GEL   K++ EKI+   ++ELL   +   P  E ++E +   + T G
Sbjct: 91  GNRKRRLGLVRFLGELFNFKVLTEKIILECLKELLESLTEEDPRDEFSLEILLLLLTTCG 150

Query: 402 KQLDEGPKSRRINDMYFSRLKE--LTTNPQLAPRLRFMVRDVLDLRANN 448
           K LD   K +++ D    R+++  L+ +P+L+ RLRFM+ D+++LR N 
Sbjct: 151 KLLDR-EKLKKLMDEILERIQKYLLSADPELSSRLRFMLEDLIELRKNK 198

MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Length = 198
>gnl|CDD|214713 smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 802
KOG0401970 consensus Translation initiation factor 4F, riboso 100.0
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 99.97
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 99.95
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 99.89
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 99.89
KOG2140739 consensus Uncharacterized conserved protein [Gener 99.87
KOG0403 645 consensus Neoplastic transformation suppressor Pdc 99.82
KOG0403 645 consensus Neoplastic transformation suppressor Pdc 99.77
KOG2141822 consensus Protein involved in high osmolarity sign 99.61
KOG2051 1128 consensus Nonsense-mediated mRNA decay 2 protein [ 98.96
KOG3942348 consensus MIF4G domain-containing protein [Transla 98.8
KOG20511128 consensus Nonsense-mediated mRNA decay 2 protein [ 98.16
KOG0401970 consensus Translation initiation factor 4F, riboso 97.77
KOG1104 759 consensus Nuclear cap-binding complex, subunit NCB 96.42
PF1215275 eIF_4G1: Eukaryotic translation initiation factor 92.23
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 89.03
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 87.53
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-67  Score=640.28  Aligned_cols=764  Identities=31%  Similarity=0.426  Sum_probs=542.2

Q ss_pred             CCCCcc---eeeeccCCCCCCCCCCCCCCCccccCCccC-CCCCCCCCCcccCCCCCCCCCcCCCCCCC----CCCCCCC
Q 045399            2 HQGDQT---VLSLRPGGGRGGAGGGGGGNSRLFSGSRFD-SGAGAAAPSLAFGSFSSDLPFLRPHGGAP----PSATGDS   73 (802)
Q Consensus         2 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~   73 (802)
                      +.+++.   +++++|+|.++        ..+.|+..... .+.+.+..+        .-..++.+++.+    .......
T Consensus       142 ~~~~~s~~~~l~~~~~~~~~--------~~~~~~~~~~~s~~~~~~~~s--------~~~~~~~~~~~~~~~~~e~~~~~  205 (970)
T KOG0401|consen  142 QEGEPSSTKALILKKSGEEA--------DDKAFGEPKESSLGEGQADSS--------TPKTSEDGIPFEKPPDPEEQKAS  205 (970)
T ss_pred             cCCCCCcccccccccccccc--------cccccccccccccccccCCCC--------CcccccccCCCCCCCCccccccc
Confidence            345566   99999999987        45566655422 111111111        111123333322    2223445


Q ss_pred             CCCCCcccccCHHHHHHHHHhhcCChHHHHHhhhhhhhhcccccccccCCCCC-CCCCCCcCCCCCCcccCCCCCCCCCC
Q 045399           74 RFEGRERVRYTREQLLQLREAAVIDDDILKIKREFESEVFGEEQIWGRAENNP-PNQPQSRYSEPDNRDWRRPAQSFPSG  152 (802)
Q Consensus        74 ~~~~~~~~~y~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~w~~~~~~~~~~  152 (802)
                      ++....+..|....+++......+++++...+......+..++.+|. ..... +...-.|..++.++||.....+..+.
T Consensus       206 ~~~~~l~~~~~~~~~~~~e~~~~~~d~~~~~~e~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  284 (970)
T KOG0401|consen  206 DRMDALTLAFSEELLLEAENTPRSSDEYVRRIEAEQEPLRPEEPSGL-RAIQKIPEKATERRAEESGRDKPEHEDQTKPA  284 (970)
T ss_pred             ccchhhhhhhhhhhhhhhhhcCCcchHHHHHHHHHhhccCCccchhh-hccccccccccccccccccccccccccccccc
Confidence            55666677888888888776678888888877777788889998882 21111 45556888899999998876665532


Q ss_pred             c--cccccccccCCCCC-CCCCCccCCccchhhhhhhhccccCCCCCCCCcccccccCCCccccCCCChHHHHHHHHHHH
Q 045399          153 E--FNRDNREFAGRYDF-RQPDGSQFNRQDQLNYQFSRVQMSSNPGGGPAPALIKAEVPWSAKRGNLSEKERVLKTVKGI  229 (802)
Q Consensus       153 ~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~en~w~~~r~~~se~e~l~r~Vk~I  229 (802)
                      .  -.+++++.++...+ .++.    .    ....+........++..|++...++..+|...+..++..+++.+.|++|
T Consensus       285 ~~~~~~~~~~~~~~~~~e~~~~----~----~~~~~~~~~~~~~~~~~ps~k~a~~~~~~~~~~~~~~~~~el~~~vrsi  356 (970)
T KOG0401|consen  285 GNRLLDEPRESQPAENGEPAKK----G----VEEVEEVVLNFAQKAPSPSPKRAKSKSDQGAERKDVELKEELAKRVRSL  356 (970)
T ss_pred             ccccccchhhhccccccccccc----c----chhhhHHHHHhccCCCCCcchhhccccccccccchhHHHHHHHHHHhhh
Confidence            2  23344433222211 1110    1    1111122222233455678888889999988887788899999999999


Q ss_pred             hhcCCHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhhCCCCCCCCCCCchhhHHHHHHH
Q 045399          230 LNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLN  309 (802)
Q Consensus       230 LNKLTpenfd~l~~qLl~l~I~s~e~Lk~VI~lIFeKAi~Ep~fs~~YA~LC~~L~~~lp~~~~~e~~~~~~~Frr~LL~  309 (802)
                      ||||||++|+.++.+++++.|++.+.|++||.+||||||.||+||.|||+||..|.. .+.++.-+.++..++||++||+
T Consensus       357 lnkltp~~~~~l~~q~~~~~i~t~~~l~~vi~~vfdkAi~EP~f~~~yA~lc~~l~~-~~~~~~~~~~~~~~~fr~~lL~  435 (970)
T KOG0401|consen  357 LNKLTPERKELLIEQLIELNVDTDDALKEVIELVFDKAINEPTFCAMYARLCFDLEG-PPSEPELDMGGDEINFRRLLLN  435 (970)
T ss_pred             cCCCchHHHHHHHHHHHhhccCcHHHHhHHHHHHHHhhhcccccchhcchhcccccC-CccCCCcCCCCCcccHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998 5555444455678999999999


Q ss_pred             HHHHHHhhhh-hhHHHHHhcCCchH-HHHHHhHHHHHhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCCCCh
Q 045399          310 ICQEAFEGAD-KLREEVRQMTAPDQ-ESERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPAE  387 (802)
Q Consensus       310 rcQeeFe~~~-~~~~e~~~~~~~e~-E~E~~dke~~~Krr~lGnIrFIGELyk~~ml~e~Im~~cI~~LL~~~~~~~p~E  387 (802)
                      +||++|+... ....++..++.+++ |.+.++.+.++++|.+|||+|||+||+..|++++|||.||..||..+.   ++|
T Consensus       436 rcq~~fe~~~~~~~~~~~~~~~~~~~e~~le~~k~~~~~rtlgn~~~ig~l~~~~ml~e~i~~~~v~~Ll~~~~---~~e  512 (970)
T KOG0401|consen  436 RCQKEFEGEDDKIADEYSEAEEPDELEEELEEEKYILRRRTLGNFRFIGELFKLKMLTEKIVHACVQKLLSDDQ---PSE  512 (970)
T ss_pred             HhHHHhhcccHHHHHHhhhhcCchhHHHHHHhccceecCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccc
Confidence            9999999987 66677777776655 666777778899999999999999999999999999999999998642   789


Q ss_pred             hcHHHHHHHHHHHhhhhhcCCchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCCCCccccccCcc-cHHHHHH
Q 045399          388 ENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLRANNWVPRREEVTAK-TITEIHS  466 (802)
Q Consensus       388 e~IE~Lc~LL~tiGk~Ld~~~k~~~~mD~~F~rL~~l~~~~~lssRIRFML~dvidLR~n~W~~r~~~~~pk-ti~eI~~  466 (802)
                      ++|||+|+|++|+|+.||........||.||.+++.+.....+++|+|||+++++|||.++|++|+.+.+++ +|++||.
T Consensus       513 e~ie~lc~f~~tig~~lD~~~~s~r~md~~~~~~k~~~~~~~~s~r~RfM~~~~idlR~~~w~~rr~~~~~~~~ieei~~  592 (970)
T KOG0401|consen  513 ESIECLCRFLTTIGKKLDFSKESPRNMDEYFNSMKNLKRKPQRSNRIRFMLQSVIDLRKSGWGPRRAEETNDKPIEEIAP  592 (970)
T ss_pred             hhhhhHHhhhhcccccccccCcccchhHHHHHHHHHhhhhhhhccchhhhhccccccccccccchhcccCCCCchhhcch
Confidence            999999999999999999754433349999999999999999999999999999999999999999988777 9999999


Q ss_pred             HHHHhcCCCCCcchhhccccCccCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCC
Q 045399          467 EAEKNLGLRPGATASIRNSRGMISGAPGVTG-----PGGMPITRPGSGGMMPGMPGTRKMPGMPGIDNDNWEFPRQRSIP  541 (802)
Q Consensus       467 ea~~~~~~~~~~~~~~r~~r~~~~~~~~~~~-----p~~~~~~~p~~gg~~p~~~~~r~~~~~~g~~~d~~~~~~~~s~~  541 (802)
                      ++.+.....+.....++.++.......+..+     +.+....++..+.+++.++...-+...+.++.++|++.......
T Consensus       593 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~e~~~~~~k~~~~~  672 (970)
T KOG0401|consen  593 EAPSANRWSPKSLSKKTEGRLAEESDSGLLGKEVVERKGKSGLRKLTPEMFDKISDPILDIADQSMDEEDGEASKQKGEQ  672 (970)
T ss_pred             hhhhhcccCcccccccccccccccccccccCccccccccccccccCChhhcccccccccccchhhccccccchhhhcccc
Confidence            9988876555555445554411111111111     11122233344445555544433333445666677754332111


Q ss_pred             CCCCCCCCCCC-CCCCCCccCCCCC----CcccCCCCCCCCCCC---cccccC---CCCCCCCCCCCCCCCCCCCCCCCC
Q 045399          542 RGDGSGMQPGG-RVQSPMINKSSSL----NTRLLPQGTGGPMGA---RSALLQ---GSGTPPPRPSNFIPGPEPTSQLPI  610 (802)
Q Consensus       542 ~~~~~~~~~~~-~~~~~~~~k~~~~----n~~~~p~~s~~~~~g---~sa~~~---~~~~p~~r~~~~~~~~~~~~q~~~  610 (802)
                      .+.....+.+. ....+..++.-..    -....++|+.|....   .++...   ..+....+++.....+.  .+...
T Consensus       673 ~~~k~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~e~~~  750 (970)
T KOG0401|consen  673 GGRKASDEQHFSSMRAPALEKVVPSLSSDIDDKRNRGSNGELLSDSYLSARCHEEFENGWSRELPSGKDGERE--PEMMS  750 (970)
T ss_pred             cccccCccccccccCCccccccccccccccccccccCCccccccccccchhhhhhccccccccCCCCcccccc--hhhcC
Confidence            11100000000 1111111111111    113344554432211   111111   11111111111110000  00000


Q ss_pred             CCCCCCCCCCCCcccCCCCCCC--CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCCC
Q 045399          611 PTKPVTSSPVPAVVEKPLRPAG--KLNLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNP  688 (802)
Q Consensus       611 ~~k~~~~~~~p~~~~~~~~~~~--~~s~eel~kk~~siL~EY~~~~D~~EA~~cvkEL~~p~~~~e~V~~~I~~aLEk~~  688 (802)
                         +.- .+++  +.+..+...  .++.+.+..++++|++||++..+.+|++.|+++|++|.+|+.+|..+|+..|++++
T Consensus       751 ---~~~-~~~~--~~~~~~~~~v~~~~~~~l~~~sk~l~ee~~~~~~~~~~~~~ie~l~S~~~~~~~v~~~v~~~l~~~~  824 (970)
T KOG0401|consen  751 ---PEY-YAAK--AAKRAGLGLVIALSSELLELLSKSLLEEFLSLRLEKEALKCIEELESPSLLLKTVGENIEPTLEKSP  824 (970)
T ss_pred             ---ccc-chhh--hhhccCCcchhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhhHHHHHHhcCcccccCh
Confidence               000 0011  112223334  78999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhCCCcCHHHHHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHhCCCCH-HHHHHHHHhhHhHHH
Q 045399          689 PCVDPVTKLLEYLFTQKVITARDIGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDF-KVVQEILKKMEEEMY  767 (802)
Q Consensus       689 ~~re~vs~LL~~L~~~~lls~~q~~~Gf~~vle~LdDl~iDiP~A~~~La~~iar~I~d~~l~~-~~l~~~~~~~e~~~~  767 (802)
                      ..++++++||..|+..+.++.+++..||..++..++|+.||+|++|.|+++|++.++..+++++ ..+.++...+.+.++
T Consensus       825 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~d~pk~w~~~~e~~gp~~~~~~~~~~e~~~~~~~~~~~~~~  904 (970)
T KOG0401|consen  825 QAVEELLQLLDILVSKNPLSIETLEIGYREKFKLADDKELDLPKGWNYIKEFLGPLIHQKILDESELVREILKNMRPNGR  904 (970)
T ss_pred             hHHHHHHHHHHHHHhcCcccHHHHhhhHHHHHhhhHHHhcccccchhHHHHhhhhHhhhccccHHHHHHHHhhcCCcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999 677888888999999


Q ss_pred             HHHHHHHHHHHHHhC-CChhhhhhhhhcHHHHhhcC
Q 045399          768 RKSVLDAALRIISCS-PGQNILDSQASDIEACQSLL  802 (802)
Q Consensus       768 ~~~v~~a~l~~l~~~-~G~~v~~~~~~~~~~~~~~~  802 (802)
                      +..++.+++..+... .+.++.+.++....+|+.++
T Consensus       905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  940 (970)
T KOG0401|consen  905 RSNVLFSVLEIVEKELGRADLGDIQRESFLSTKTLL  940 (970)
T ss_pred             ccchHHHHHHHHHHhhhHHHHHHHHHHhcccchhcc
Confidence            999999999999988 78999999999998887653

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms] Back     alignment and domain information
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification] Back     alignment and domain information
>KOG3942 consensus MIF4G domain-containing protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification] Back     alignment and domain information
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification] Back     alignment and domain information
>PF12152 eIF_4G1: Eukaryotic translation initiation factor 4G1; InterPro: IPR022745 The eukaryotic initiation factor 4G (eIF4G) is the core of a multicomponent switch controlling gene expression at the level of translation initiation Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query802
1hu3_A260 Middle Domain Of Human Eif4gii Length = 260 1e-37
2vso_E284 Crystal Structure Of A Translation Initiation Compl 4e-19
1ug3_A 339 C-Terminal Portion Of Human Eif4gi Length = 339 1e-06
2hm8_A136 Solution Structure Of The C-Terminal Ma-3 Domain Of 6e-05
3eij_A321 Crystal Structure Of Pdcd4 Length = 321 1e-04
2ion_A152 Crystal Structure Of The C-terminal Ma3 Domain Of P 3e-04
3eiq_C358 Crystal Structure Of Pdcd4-eif4a Length = 358 3e-04
2zu6_B307 Crystal Structure Of The Eif4a-Pdcd4 Complex Length 3e-04
3rk6_A234 Crystal Structure Of The Middle Domain Of Human Pai 5e-04
2kzt_B131 Structure Of The Tandem Ma-3 Region Of Pdcd4 Length 5e-04
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii Length = 260 Back     alignment and structure 
Iteration: 1

 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/266 (39%), Positives = 155/266 (58%), Gaps = 31/266 (11%)
Query: 220 ERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQ 279
           + + + V+ ILNKLTP+ F+ L  Q+    + + + LK VI L+F+KA+ EP+F   YA 
Sbjct: 9   QELFRKVRSILNKLTPQXFNQLXKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYAN 68
Query: 280 LCSDL-NEKLPPFPSDEPGGKEITFKRVLLNICQEAFEG--AD-----KLREEVRQMTAP 331
            C  L   K+P   +D+PG   + F+++LLN CQ+ FE   AD     K ++E+   +AP
Sbjct: 69  XCRCLVTLKVPX--ADKPGNT-VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAP 125
Query: 332 -------DQESERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELL-GHDSST 383
                  D+  E +DK R    R++GNI+ IGEL K K + E I H  V +LL  HD   
Sbjct: 126 EERTRLHDELEEAKDKARR---RSIGNIKFIGELFKLKXLTEAIXHDCVVKLLKNHD--- 179
Query: 384 CPAEENVEAICQFVNTIGKQLD-EGPKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDVL 442
              EE++E +C+ + TIGK LD E  K R   D YF++ +++    + + R+RF ++DV+
Sbjct: 180 ---EESLECLCRLLTTIGKDLDFEKAKPR--XDQYFNQXEKIVKERKTSSRIRFXLQDVI 234
Query: 443 DLRANNWVPRREEVTAKTITEIHSEA 468
           DLR  NWV RR +   KTI +IH EA
Sbjct: 235 DLRLCNWVSRRADQGPKTIEQIHKEA 260
>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex Length = 284 Back     alignment and structure
>pdb|1UG3|A Chain A, C-Terminal Portion Of Human Eif4gi Length = 339 Back     alignment and structure
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4 Length = 136 Back     alignment and structure
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4 Length = 321 Back     alignment and structure
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4 (mouse); Form2 Length = 152 Back     alignment and structure
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a Length = 358 Back     alignment and structure
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 307 Back     alignment and structure
>pdb|3RK6|A Chain A, Crystal Structure Of The Middle Domain Of Human Paip1 Length = 234 Back     alignment and structure
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4 Length = 131 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query802
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 100.0
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 100.0
3rk6_A234 Polyadenylate-binding protein-interacting protein; 100.0
2i2o_A224 EIF4G-like protein; protein structure initiative, 100.0
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 99.97
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 99.97
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 99.96
1ug3_A 339 EIF4GI, eukaryotic protein synthesis initiation fa 99.95
3eiq_C 358 Programmed cell death protein 4; PDCD4, anti-oncog 99.94
2zu6_B307 Programmed cell death protein 4; protein-protein c 99.93
3l6a_A 364 Eukaryotic translation initiation factor 4 gamma; 99.93
2zu6_B 307 Programmed cell death protein 4; protein-protein c 99.93
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 99.92
1uw4_B248 UPF2, regulator of nonsense transcripts 2; nonsens 99.71
1h2v_C 771 80 kDa nuclear CAP binding protein; CAP-binding-co 98.95
4b89_A249 General negative regulator of transcription subun; 95.21
4gmj_A229 CCR4-NOT transcription complex subunit 1; mRNA dec 93.66
1rf8_B100 Eukaryotic initiation factor 4F subunit P150; prot 89.76
3hxi_C21 Eukaryotic translation initiation factor 4E- bindi 86.13
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 83.09
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
Probab=100.00  E-value=1.3e-54  Score=459.09  Aligned_cols=242  Identities=38%  Similarity=0.693  Sum_probs=185.1

Q ss_pred             hHHHHHHHHHHHhhcCCHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh-hCCCCCCCCC
Q 045399          218 EKERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNE-KLPPFPSDEP  296 (802)
Q Consensus       218 e~e~l~r~Vk~ILNKLTpenfd~l~~qLl~l~I~s~e~Lk~VI~lIFeKAi~Ep~fs~~YA~LC~~L~~-~lp~~~~~e~  296 (802)
                      +++++.|+|++|||||||+||+.|+.||+++++.+.+.+++||++||+||+.||+|+.|||+||..|+. .+|.+   +.
T Consensus         7 ~~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~---~~   83 (260)
T 1hu3_A            7 KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMA---DK   83 (260)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC-------
T ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcc---cC
Confidence            457899999999999999999999999999999999999999999999999999999999999999997 46654   22


Q ss_pred             CCchhhHHHHHHHHHHHHHhhhhhhHH-------HHHhcCCchH--HH--HHHhHHHHHhhhhhhHHHHHHHHHhcCCCC
Q 045399          297 GGKEITFKRVLLNICQEAFEGADKLRE-------EVRQMTAPDQ--ES--ERRDKERLVKLRTLGNIRLIGELLKQKMVP  365 (802)
Q Consensus       297 ~~~~~~Frr~LL~rcQeeFe~~~~~~~-------e~~~~~~~e~--E~--E~~dke~~~Krr~lGnIrFIGELyk~~ml~  365 (802)
                      .+...+||++||++||++|++.++...       ++.....+++  ++  |.++.+.+.|+|++|+|+||||||+++||+
T Consensus        84 ~~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~  163 (260)
T 1hu3_A           84 PGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLT  163 (260)
T ss_dssp             -----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSC
T ss_pred             CccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCC
Confidence            335678999999999999999864321       1111111111  00  111222467899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCChhcHHHHHHHHHHHhhhhhcCCchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 045399          366 EKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLR  445 (802)
Q Consensus       366 e~Im~~cI~~LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~mD~~F~rL~~l~~~~~lssRIRFML~dvidLR  445 (802)
                      ++|||+||..||.+     |+|++|||+|.||+|||+.|+. ++++..||.||.+|+.++.+.++|+|+||||+||+|||
T Consensus       164 ~~i~~~~l~~Ll~~-----~~e~~iE~l~~lL~tvG~~L~~-~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dLR  237 (260)
T 1hu3_A          164 EAIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLR  237 (260)
T ss_dssp             HHHHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            99999999999986     7999999999999999999997 34557899999999999999999999999999999999


Q ss_pred             hCCCCccccccCcccHHHHHHHH
Q 045399          446 ANNWVPRREEVTAKTITEIHSEA  468 (802)
Q Consensus       446 ~n~W~~r~~~~~pkti~eI~~ea  468 (802)
                      +|||++++.+.+||||+|||+||
T Consensus       238 ~~~W~~~~~~~~pkti~~i~~ea  260 (260)
T 1hu3_A          238 LCNWVSRRADQGPKTIEQIHKEA  260 (260)
T ss_dssp             HTTTCC-----------------
T ss_pred             HcCCCCCccccCCCcHHHHHhhC
Confidence            99999999999999999999987
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Back     alignment and structure
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Back     alignment and structure
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Back     alignment and structure
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B Back     alignment and structure
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A Back     alignment and structure
>1rf8_B Eukaryotic initiation factor 4F subunit P150; protein biosynthesis, translation regulat biosynthetic protein, translation; HET: MTN M7G; NMR {Saccharomyces cerevisiae} SCOP: a.210.1.1 Back     alignment and structure
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C* Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 802
d1hu3a_243 a.118.1.14 (A:) Eukaryotic initiation factor eIF4G 2e-68
d1uw4b_248 a.118.1.14 (B:) Regulator of nonsense transcripts 2e-47
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 6e-36
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 6e-33
d1h2vc1262 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-bin 2e-05
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 243 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  224 bits (571), Expect = 2e-68
 Identities = 84/244 (34%), Positives = 141/244 (57%), Gaps = 19/244 (7%)

Query: 218 EKERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMY 277
           + + + + V+ ILNKLTP+ F+ L  Q+    + + + LK VI L+F+KA+ EP+F   Y
Sbjct: 7   KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAY 66

Query: 278 AQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGA-------DKLREEVRQMTA 330
           A +C  L     P    +  G  + F+++LLN CQ+ FE         +K ++E+   +A
Sbjct: 67  ANMCRCLVTLKVPM--ADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASA 124

Query: 331 PDQE----SERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPA 386
           P++      E  + +   + R++GNI+ IGEL K KM+ E I+H  V +LL         
Sbjct: 125 PEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLL-----KNHD 179

Query: 387 EENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLRA 446
           EE++E +C+ + TIGK LD   K++   D YF++++++    + + R+RFM++DV+DLR 
Sbjct: 180 EESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRL 238

Query: 447 NNWV 450
            NWV
Sbjct: 239 CNWV 242
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 248 Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 262 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query802
d1hu3a_243 Eukaryotic initiation factor eIF4G {Human (Homo sa 100.0
d1uw4b_248 Regulator of nonsense transcripts 2, UPF2 {Human ( 100.0
d1ug3a1193 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.96
d2nsza1129 Programmed cell death 4, PDCD4 {Mouse (Mus musculu 99.96
d1h2vc1262 CBP80, 80KDa nuclear cap-binding protein {Human (H 99.22
d1rf8b_100 Eukaryotic initiation factor 4f subunit eIF4g, eIF 89.74
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-43  Score=365.77  Aligned_cols=226  Identities=36%  Similarity=0.673  Sum_probs=184.3

Q ss_pred             hHHHHHHHHHHHhhcCCHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhhCCCCCCCCCC
Q 045399          218 EKERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPG  297 (802)
Q Consensus       218 e~e~l~r~Vk~ILNKLTpenfd~l~~qLl~l~I~s~e~Lk~VI~lIFeKAi~Ep~fs~~YA~LC~~L~~~lp~~~~~e~~  297 (802)
                      +.+++.|+|+++|||||++||+.++++|+++++++.+.++.+|+.||+||+.||+|+.+||+||..|....+.+.  +..
T Consensus         7 ~~~~l~r~v~~lLNKLt~~n~~~i~~ei~~l~~~~~~~l~~~v~~I~~kai~e~~f~~~YA~Lc~~l~~~~~~~~--~~~   84 (243)
T d1hu3a_           7 KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMA--DKP   84 (243)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC-------
T ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHhcCccc--ccc
Confidence            356899999999999999999999999999999999999999999999999999999999999999999877653  233


Q ss_pred             CchhhHHHHHHHHHHHHHhhhhhhHHHH-------HhcCCchHH----HHHHhHHHHHhhhhhhHHHHHHHHHhcCCCCH
Q 045399          298 GKEITFKRVLLNICQEAFEGADKLREEV-------RQMTAPDQE----SERRDKERLVKLRTLGNIRLIGELLKQKMVPE  366 (802)
Q Consensus       298 ~~~~~Frr~LL~rcQeeFe~~~~~~~e~-------~~~~~~e~E----~E~~dke~~~Krr~lGnIrFIGELyk~~ml~e  366 (802)
                      ++...|++.||++||++|++........       .....++++    .+..+.+.+.|++++|+++||||||++++++.
T Consensus        85 ~~~~~F~~~Ll~~~q~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeLy~~~~v~~  164 (243)
T d1hu3a_          85 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTE  164 (243)
T ss_dssp             ----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCH
T ss_pred             ccchHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHccccchH
Confidence            4567899999999999999874322111       111111110    11122234578899999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCChhcHHHHHHHHHHHhhhhhcCCchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHh
Q 045399          367 KIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLRA  446 (802)
Q Consensus       367 ~Im~~cI~~LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~mD~~F~rL~~l~~~~~lssRIRFML~dvidLR~  446 (802)
                      ++|++||..|+.+     |+|++|||||.||++||+.|+.. ..+..||.||++|+.+.++.++|+||||||+||+|||+
T Consensus       165 ~~i~~~l~~Ll~~-----~~e~~ie~l~~lL~~~G~~L~~~-~~~~~~~~~~~~l~~~~~~~~~s~Rirfml~~l~elR~  238 (243)
T d1hu3a_         165 AIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDFE-KAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRL  238 (243)
T ss_dssp             HHHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCCT-TTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999986     78999999999999999999863 44578999999999999999999999999999999999


Q ss_pred             CCCCc
Q 045399          447 NNWVP  451 (802)
Q Consensus       447 n~W~~  451 (802)
                      +||+.
T Consensus       239 ~~W~s  243 (243)
T d1hu3a_         239 CNWVS  243 (243)
T ss_dssp             TTTCC
T ss_pred             cCCCC
Confidence            99984
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rf8b_ a.210.1.1 (B:) Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure