Citrus Sinensis ID: 045414

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MSLISKLRHHLPNRLSRNPSVYPILALRSLSFNGVASRSFGQTVKKEEEEEEEVEIDQRRLPANYNPATFDYQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccccccccHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccHHEEEEHHcccccHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHcccEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccccccHHHHHHccccHHHHHHHHHHHHHccccccccccHcccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHccEEEEEEEcccHHHHHHHHHHHHHHHcccHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHHHccEEEEc
Coil and Loop (DISEMBL)
MSLISKlrhhlpnrlsrnpsvypILALRSlsfngvasrsfgqtvkkeeeeEEEVEIdqrrlpanynpatfdyqsIQVLRLHELVDevsgltlseSAELGLIMMKkqgmteppvvgvlkpgaagftgmamktggaaakeelkpektafdlklesyDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME
Flexible Loop (DISEMBL)
MSLISKLrhhlpnrlsrnpsVYPILALRSLSFNGVASRSfgqtvkkeeeeeeeveidqrrlpanynpATFDYQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTafdlklesydanakvKIIKELRTFTDLGlkeakdlvektpavlkkgvlkeeaeKIIEKmkavggkvime
Low Complexity Region (SEG)
MSLISKLRHHLPNRLSRNPSVYPILALRSLSFNGVASRSFGQTvkkeeeeeeeveIDQRRLPANYNPATFDYQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPgaagftgmamktggaaakEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLkeeaekiiekmkaVGGKVIME
Disordered region (IsUnstruct)
********************VYPILALRSLSFNG******************************YNPATFDYQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGM**PPVVGVLKPGAAGFTG*******************AFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLK*****II*************
Disordered Region (DISOPRED)
********HHLPNRLS***************************************************************LHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGV***************************KTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME
Disordered Region (DISEMBL)
MSLISKLRHHLPNRLSRNPSVYPILALRSLSFNGVASR*******************QRRLPANYNPATFDYQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME
Disordered Region (DISPRO)
*SLISKLRHHLPNRLSRNPSVYPILALRSLSFNGVASRSFGQTVKK****************************IQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKP**********************PEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLISKLRHHLPNRLSRNPSVYPILALRSLSFNGVASRSFGQTVKKEEEEEEEVEIDQRRLPANYNPATFDYQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
B3EER1	125	50S ribosomal protein L7/	yes	no	0.570	0.976	0.402	5e-13
A2C031	131	50S ribosomal protein L7/	yes	no	0.331	0.541	0.521	8e-13
P41189	125	50S ribosomal protein L7/	N/A	no	0.327	0.56	0.514	1e-12
A9BDG4	132	50S ribosomal protein L7/	yes	no	0.327	0.530	0.528	2e-12
Q7VDY8	130	50S ribosomal protein L7/	yes	no	0.327	0.538	0.514	2e-12
Q46HH2	131	50S ribosomal protein L7/	yes	no	0.331	0.541	0.507	4e-12
A6X0A8	124	50S ribosomal protein L7/	yes	no	0.551	0.951	0.409	6e-12
P53163	194	54S ribosomal protein L12	yes	no	0.387	0.427	0.476	7e-12
Q9USJ9	173	54S ribosomal protein L12	no	no	0.612	0.757	0.375	9e-12
A5VR16	124	50S ribosomal protein L7/	yes	no	0.551	0.951	0.409	1e-11

>sp|B3EER1|RL7_CHLL2 50S ribosomal protein L7/L12 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=rplL PE=3 SV=1

 Score = 74.3 bits (181), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 79/134 (58%), Gaps = 12/134 (8%)

Query: 78  LRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAK 137
           + +  LV+E+  LTL+E++EL   + +K G++  P +       AG    A   G A A+
Sbjct: 1   MSIETLVEEIGKLTLTEASELVKALEEKFGVSAAPAI------VAGIASAA-PAGDAPAQ 53

Query: 138 EELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEA 197
           EE    KT FD+ L S    +K+ +IK +R  T LGLKEAKDLV+  P  +K+ V K+EA
Sbjct: 54  EE----KTEFDVVLTSA-GESKINVIKVVRALTGLGLKEAKDLVDGAPKTVKEAVSKDEA 108

Query: 198 EKIIEKMKAVGGKV 211
           EKI +++K VG  V
Sbjct: 109 EKIAKELKDVGAGV 122

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.
Chlorobium limicola (strain DSM 245 / NBRC 103803) (taxid: 290315)

>sp|A2C031|RL7_PROM1 50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) GN=rplL PE=3 SV=1

 Score = 73.9 bits (180), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 54/71 (76%)

Query: 143 EKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIE 202
           EKT F++ LES+DA++K+K++KE+R  T LGL EAK LVE  P  +K+G  KE+AE + +
Sbjct: 60  EKTEFEVVLESFDASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIKEGATKEDAEALKK 119

Query: 203 KMKAVGGKVIM 213
            ++AVGGKV +
Sbjct: 120 AIEAVGGKVTL 130

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Prochlorococcus marinus (strain NATL1A) (taxid: 167555)

>sp|P41189|RL7_LIBAF 50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 51/70 (72%)

Query: 144 KTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEK 203
           KT F++ LE +DA  K+ +IKE+R  T+LGLKEAKD VE  P  LK GV K+EAE++ +K
Sbjct: 55  KTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKK 114

Query: 204 MKAVGGKVIM 213
           ++A G  +I+
Sbjct: 115 LEAAGATIIL 124

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Liberibacter africanus (taxid: 34020)

>sp|A9BDG4|RL7_PROM4 50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplL PE=3 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 52/70 (74%)

Query: 144 KTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEK 203
           KT FD+ LES+DA AK+K++KE+R  T LGL EAK +VE  P  +K+G  KE+AE + + 
Sbjct: 62  KTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASKEDAEALKKA 121

Query: 204 MKAVGGKVIM 213
           ++AVGGKV +
Sbjct: 122 IEAVGGKVTL 131

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Prochlorococcus marinus (strain MIT 9211) (taxid: 93059)

>sp|Q7VDY8|RL7_PROMA 50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=rplL PE=3 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 53/70 (75%)

Query: 144 KTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEK 203
           KT FD+ LES+DA+AK+K++KE+R  T LGL +AK +VE  P  +K+G  KE+AE + + 
Sbjct: 60  KTEFDVVLESFDASAKIKVLKEVRNATGLGLGDAKAMVEAAPKTIKEGASKEDAEALKKA 119

Query: 204 MKAVGGKVIM 213
           ++AVGGKV +
Sbjct: 120 IEAVGGKVTL 129

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

>sp|Q46HH2|RL7_PROMT 50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL2A) GN=rplL PE=3 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 54/71 (76%)

Query: 143 EKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIE 202
           EKT F++ LES++A++K+K++KE+R  T LGL EAK LVE  P  +K+G  KE+AE + +
Sbjct: 60  EKTEFEVVLESFEASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIKEGATKEDAEALKK 119

Query: 203 KMKAVGGKVIM 213
            ++AVGGKV +
Sbjct: 120 AIEAVGGKVTL 130

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Prochlorococcus marinus (strain NATL2A) (taxid: 59920)

>sp|A6X0A8|RL7_OCHA4 50S ribosomal protein L7/L12 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplL PE=3 SV=1

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 14/132 (10%)

Query: 80  LHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEE 139
           L ++VD++S LT+ E+AEL  ++ +K G++                 +A+   G AA   
Sbjct: 4   LAKIVDDLSALTVLEAAELSKLLEEKWGVSAAAP-------------VAVAAAGGAAPAA 50

Query: 140 LKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEK 199
              EKT FD+ L    AN K+ +IKE+R  T LGLKEAKDLVE  P  +K+G  K+EAEK
Sbjct: 51  AAEEKTEFDVVLADGGAN-KINVIKEVRAITGLGLKEAKDLVEGAPKAVKEGASKDEAEK 109

Query: 200 IIEKMKAVGGKV 211
           I  +++A G KV
Sbjct: 110 IKAQLEAAGAKV 121

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) (taxid: 439375)

>sp|P53163|MNP1_YEAST 54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MNP1 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 1/84 (1%)

Query: 132 GGAAAKEELKPE-KTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKK 190
            G+ A+EE KPE KT F +KL+S+D   K K+IKE++    L L EAK  VE  P VLK+
Sbjct: 111 AGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLLGLSLVEAKKFVEAAPKVLKE 170

Query: 191 GVLKEEAEKIIEKMKAVGGKVIME 214
            V K++AEKI + ++ +G KV +E
Sbjct: 171 NVAKDDAEKIKKTLEDLGAKVSLE 194

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9USJ9|MNP1_SCHPO 54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mnp1 PE=3 SV=2

 Score = 70.5 bits (171), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 80/136 (58%), Gaps = 5/136 (3%)

Query: 79  RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKE 138
           ++ E+VD++S L+L E++EL      KQ   +  +  +    A      +       A E
Sbjct: 43  QIGEMVDKISSLSLLETSELV-----KQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAPE 97

Query: 139 ELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAE 198
           E K EKT ++LKLES+DA +K K+IKE+++   L L +AK  VE  P VLK+ +LKE+AE
Sbjct: 98  EKKEEKTTWNLKLESFDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAE 157

Query: 199 KIIEKMKAVGGKVIME 214
            I  K++ +  KV++E
Sbjct: 158 AIKSKLEKLSCKVVLE 173

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A5VR16|RL7_BRUO2 50S ribosomal protein L7/L12 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplL PE=3 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 78/132 (59%), Gaps = 14/132 (10%)

Query: 80  LHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEE 139
           L ++V+++S LT+ E+AEL  ++ +K G++                 +A+   G AA   
Sbjct: 4   LAKIVEDLSALTVLEAAELSKLLEEKWGVSAAAP-------------VAVAAAGGAAPAA 50

Query: 140 LKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEK 199
              EKT FD+ L    AN K+ +IKE+R  T LGLKEAKDLVE  P  +K+GV K+EAEK
Sbjct: 51  AAEEKTEFDVVLADGGAN-KINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGVSKDEAEK 109

Query: 200 IIEKMKAVGGKV 211
           I  +++A G KV
Sbjct: 110 IKAQLEAAGAKV 121

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) (taxid: 444178)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
356557042	217	PREDICTED: 50S ribosomal protein L7/L12-	0.990	0.976	0.593	3e-56
449454776	214	PREDICTED: 54S ribosomal protein L12, mi	0.985	0.985	0.585	2e-53
388500396	216	unknown [Medicago truncatula]	0.990	0.981	0.559	5e-53
359806898	216	uncharacterized protein LOC100794355 [Gl	0.990	0.981	0.555	2e-52
359473073	206	PREDICTED: 50S ribosomal protein L7/L12-	0.929	0.966	0.552	6e-51
388512781	217	unknown [Medicago truncatula]	0.990	0.976	0.547	6e-51
359497812	206	PREDICTED: 50S ribosomal protein L7/L12-	0.934	0.970	0.540	6e-49
224074131	216	predicted protein [Populus trichocarpa]	0.985	0.976	0.598	6e-49
255585457	301	50S ribosomal protein L7/L12, putative [	0.869	0.617	0.7	9e-47
297737999	216	unnamed protein product [Vitis vinifera]	0.724	0.717	0.618	9e-46

>gi|356557042|ref|XP_003546827.1| PREDICTED: 50S ribosomal protein L7/L12-like [Glycine max]

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 130/219 (59%), Positives = 164/219 (74%), Gaps = 7/219 (3%)

Query: 1   MSLISKLRHHLPNRLSRNPSVYPILALRSLSFNGVASRSFGQTVKKEEEEEEEVE--IDQ 58
           MSL+S++RH+LPN L R P ++P +   + S   V SR FGQ  +KEEEEE+  E  I+Q
Sbjct: 1   MSLLSRIRHYLPNGLCRQP-LHPTVVRLNASNLNVFSRHFGQPARKEEEEEDVEEVEINQ 59

Query: 59  RRLPANYNPATFD---YQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVG 115
           R LPA+++PATFD   ++     R+  LVDEV+ LT++E+AELGL +MKK G+ E P VG
Sbjct: 60  RSLPADFDPATFDPNDHRGPPSERVFRLVDEVASLTVAEAAELGLTLMKKMGVKEMPNVG 119

Query: 116 VLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLK 175
            +K GA    GMA K    AAKEE KPEKT F+LKLESY+A +K+KIIKE+R FTDLGLK
Sbjct: 120 FMKAGAGNLAGMAAK-APTAAKEEQKPEKTVFELKLESYEAASKIKIIKEVRGFTDLGLK 178

Query: 176 EAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME 214
           EAKDLVEKTPAV+KKGV KEE E+IIEK+KA+G KV+ME
Sbjct: 179 EAKDLVEKTPAVIKKGVSKEEGEQIIEKLKALGAKVVME 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454776|ref|XP_004145130.1| PREDICTED: 54S ribosomal protein L12, mitochondrial-like isoform 1 [Cucumis sativus] gi|449454778|ref|XP_004145131.1| PREDICTED: 54S ribosomal protein L12, mitochondrial-like isoform 2 [Cucumis sativus] gi|449472279|ref|XP_004153545.1| PREDICTED: 54S ribosomal protein L12, mitochondrial-like isoform 1 [Cucumis sativus] gi|449472282|ref|XP_004153546.1| PREDICTED: 54S ribosomal protein L12, mitochondrial-like isoform 2 [Cucumis sativus] gi|449503353|ref|XP_004161960.1| PREDICTED: 54S ribosomal protein L12, mitochondrial-like isoform 1 [Cucumis sativus] gi|449503355|ref|XP_004161961.1| PREDICTED: 54S ribosomal protein L12, mitochondrial-like isoform 2 [Cucumis sativus]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/217 (58%), Positives = 160/217 (73%), Gaps = 6/217 (2%)

Query: 1   MSLISKLRHHLPNRLSRNPSVYPILALRSLSFNGVASRSFGQTVKKEEEEEEEVEIDQRR 60
           M L+S++ H LPN  + N      +AL  L+ NG+  R++ Q   + EEEEEEVEIDQRR
Sbjct: 1   MRLVSRISHLLPNVFA-NTIRSSTVALNPLNRNGL-HRNYAQP-SRIEEEEEEVEIDQRR 57

Query: 61  LPANYNPATFD---YQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVL 117
           LPA+Y+PA FD   ++S    R+  LVDE+SGLTL E AE+  I+MKK GMTE PV G +
Sbjct: 58  LPADYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYM 117

Query: 118 KPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEA 177
           KPGA G  GM  K   A AKEE K EKT ++LKLESY+A+AK+KIIKE+R+ TDLGLKEA
Sbjct: 118 KPGAVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEA 177

Query: 178 KDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME 214
           KDLV+K P+VLKKG+ KEE E+I+EKMKA+G KVI+E
Sbjct: 178 KDLVDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 214

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500396|gb|AFK38264.1| unknown [Medicago truncatula]

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 122/218 (55%), Positives = 159/218 (72%), Gaps = 6/218 (2%)

Query: 1   MSLISKLRHHLPNRLSRNPSVYPILALRSLSFNGVASRSFGQTVKKEEEEEEEVE-IDQR 59
           MSL+ ++RH L N   R P     + L +   N V SR+FGQ  +KEEEE+ E   IDQR
Sbjct: 1   MSLLLRIRHRLHNGFYRQPLYESTIGLNARKLN-VFSRNFGQAARKEEEEDVEEVEIDQR 59

Query: 60  RLPANYNPATFDYQSIQ---VLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGV 116
            LPA+++PATFD  + +     R+  LVDEV+ LTL+E AELGLI+MKK G+ E P VG 
Sbjct: 60  SLPADFDPATFDPTNNRGPPSERVFRLVDEVASLTLAEGAELGLILMKKMGIKEMPNVGY 119

Query: 117 LKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKE 176
           +K G+A   GMA KT   AA+EE+KPEKT F+LKL S++A +K+K+IKE+R FTDLGLKE
Sbjct: 120 MKAGSANLAGMATKTT-TAAQEEVKPEKTVFELKLLSFEATSKIKVIKEVRGFTDLGLKE 178

Query: 177 AKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME 214
           AKD+VEKTP+++KKGV KEE E+IIEKMKA+G  V++E
Sbjct: 179 AKDIVEKTPSIIKKGVSKEEGEQIIEKMKALGANVVLE 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806898|ref|NP_001241576.1| uncharacterized protein LOC100794355 [Glycine max] gi|255646953|gb|ACU23946.1| unknown [Glycine max]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/218 (55%), Positives = 160/218 (73%), Gaps = 6/218 (2%)

Query: 1   MSLISKLRHHLPNRLSRNPSVYPILALRSLSFNGVASRSFGQTVKKEEEEEEEVE-IDQR 59
           MSL+ ++RH+LP  L R P ++P +   + S   V SR FGQ  +KEEE++ E   IDQ+
Sbjct: 1   MSLLLRIRHYLPKGLCRQP-LHPTVVRLNASNLNVFSRHFGQPARKEEEDDVEEVEIDQK 59

Query: 60  RLPANYNPATFD---YQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGV 116
            LPA+++PATFD   ++     R+  L+DE++ LT++E+ ELGLI+MKK G+ E P VG 
Sbjct: 60  CLPADFDPATFDPNDHRGPPSERVFRLIDEIASLTVAEAGELGLILMKKMGVKEMPNVGF 119

Query: 117 LKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKE 176
           +K GA    GMA K    AAKEE K EKT F+LKLESY+A +K+KIIKE+R FTDLGLKE
Sbjct: 120 MKAGAGNLAGMAAKAP-TAAKEEQKLEKTVFELKLESYEAASKIKIIKEVRGFTDLGLKE 178

Query: 177 AKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME 214
           AKDLVEKTP+V+KKG+ KEE E+IIEK+KA+G KV+ME
Sbjct: 179 AKDLVEKTPSVIKKGISKEEGEQIIEKLKALGAKVVME 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473073|ref|XP_003631242.1| PREDICTED: 50S ribosomal protein L7/L12-like [Vitis vinifera]

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 122/221 (55%), Positives = 156/221 (70%), Gaps = 22/221 (9%)

Query: 1   MSLISKL-RHHLPNRLSRNPSVYPILALRSLSFNGVASRSFGQTV--KKEEEEEEEVEID 57
           MSLI++  RHH  +   RN +++              SR   Q    K ++E EEEVEID
Sbjct: 1   MSLITRSSRHHFLSTFCRNSAIF--------------SRKLSQAAANKVDDESEEEVEID 46

Query: 58  QRRLPANYNPATFD---YQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVV 114
           QRRLPA+Y+PA FD   ++S    R+  LVDE++GLTL E AEL  I+ KK GM EPPVV
Sbjct: 47  QRRLPADYDPANFDPTQHRSPPTARVFRLVDEIAGLTLVEVAELSSILRKKLGMKEPPVV 106

Query: 115 GVLKPGA-AGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLG 173
            ++KPGA A  +G  MK   +AAKEE KPEKT F+LKLESY+A +K+KIIKE+R+FTDLG
Sbjct: 107 AIMKPGAVAAVSGGGMK-AASAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLG 165

Query: 174 LKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME 214
           LKEAKDLVEK P+VLK GV KEE E+++EK+KA+G KV++E
Sbjct: 166 LKEAKDLVEKAPSVLKAGVSKEEGEQLVEKLKALGAKVVLE 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512781|gb|AFK44452.1| unknown [Medicago truncatula]

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/219 (54%), Positives = 157/219 (71%), Gaps = 7/219 (3%)

Query: 1   MSLISKLRHHLPNRL-SRNPSVYPILALRSLSFNGVASRSFGQTVKKEEEEEEEVE-IDQ 58
           MSL+ ++RH LPN L  R P     L L + + N V +R+ GQ  ++EEEE+ E   IDQ
Sbjct: 1   MSLLLRIRHCLPNSLLYRQPLTASTLGLNARTLN-VFTRNLGQAAREEEEEDVEEVEIDQ 59

Query: 59  RRLPANYNPATFD---YQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVG 115
           R LP +++PATFD   ++     R+ +LVDEV+ LTL+E AELGL +MKK G+ E P VG
Sbjct: 60  RSLPTDFDPATFDPTDHRGPPSERVFKLVDEVASLTLAEGAELGLTLMKKMGIKEMPNVG 119

Query: 116 VLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLK 175
            +KPG+    GMA K     AKEE KPEKT F+LKL SY+A +K+K+IKE+R FTDLGLK
Sbjct: 120 FMKPGSVNLAGMAAK-ASIEAKEEQKPEKTVFELKLTSYEAASKIKVIKEVRGFTDLGLK 178

Query: 176 EAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME 214
           EAKDLVEKTP+++KKGV KEE ++IIEK+KA+G  V+ME
Sbjct: 179 EAKDLVEKTPSIIKKGVSKEEGDQIIEKLKALGAVVVME 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497812|ref|XP_003635653.1| PREDICTED: 50S ribosomal protein L7/L12-like [Vitis vinifera]

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 119/220 (54%), Positives = 152/220 (69%), Gaps = 20/220 (9%)

Query: 1   MSLISKL-RHHLPNRLSRNPSVYPILALRSLSFNGVASRSFGQTV--KKEEEEEEEVEID 57
           MSLI++  RHH  +   RN +++              SR   Q    K ++E EEEVEID
Sbjct: 1   MSLITRSSRHHFLSTFCRNSAIF--------------SRKLSQAAANKVDDESEEEVEID 46

Query: 58  QRRLPANYNPATFD---YQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVV 114
           QRRLPA+Y+PA FD   ++S    R+  LVDE++GLTL E AEL  I+ KK GM EPPVV
Sbjct: 47  QRRLPADYDPANFDPTQHRSPPTARVFRLVDEIAGLTLVEVAELSSILRKKLGMKEPPVV 106

Query: 115 GVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGL 174
            ++KPGAA           +AAKEE KPEKT F+LKLESY+A +K+KIIKE+R+FTDLGL
Sbjct: 107 AIMKPGAAAAVSGGGMKAASAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGL 166

Query: 175 KEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME 214
           KEAKDLVEK P+VLK GV KEE E+++EK+KA+G KV++E
Sbjct: 167 KEAKDLVEKAPSVLKAGVSKEEGEQLVEKLKALGAKVVLE 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074131|ref|XP_002304265.1| predicted protein [Populus trichocarpa] gi|222841697|gb|EEE79244.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 131/219 (59%), Positives = 167/219 (76%), Gaps = 8/219 (3%)

Query: 1   MSLISKLRHHLPNRLSRNPSVYPILALRSLSFNGVASRSFGQTVKKEEEEEEEVE-IDQR 59
           MSLIS+LRH LPN  S  P++ P++ L   +FN V SR F +  +K E EEEE   IDQR
Sbjct: 1   MSLISRLRHCLPNGFSTKPTISPLMPL---NFNAVLSRGFAEAARKVEAEEEEEVEIDQR 57

Query: 60  RLPANYNPATFD---YQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGV 116
           RLP +Y+PATFD   ++S    R+ +LV+E++GLTL E +ELG I+MK+  MTEPP +GV
Sbjct: 58  RLPTDYDPATFDPTEHRSPPTERVFKLVEEIAGLTLMEISELGTIIMKRMKMTEPPTIGV 117

Query: 117 LKPGAAGFTGMAMKTGGAAAKEELKPEK-TAFDLKLESYDANAKVKIIKELRTFTDLGLK 175
           LK GAAG  GMAMK   AAA +E K  + T F+LKLES++A +K+K+IKE+R+FTDLGLK
Sbjct: 118 LKGGAAGLAGMAMKAPAAAAAKEEKKAEKTVFELKLESFEAASKIKVIKEVRSFTDLGLK 177

Query: 176 EAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME 214
           EAKDLVEKTP+VLKKGV KEE E+IIEKMKA+G KV++E
Sbjct: 178 EAKDLVEKTPSVLKKGVSKEEGEQIIEKMKAIGAKVVLE 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585457|ref|XP_002533422.1| 50S ribosomal protein L7/L12, putative [Ricinus communis] gi|223526735|gb|EEF28965.1| 50S ribosomal protein L7/L12, putative [Ricinus communis]

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 133/190 (70%), Positives = 157/190 (82%), Gaps = 4/190 (2%)

Query: 29  SLSFNGVA-SRSFGQTVKKEEEEEEEVEIDQRRLPANYNPATFD---YQSIQVLRLHELV 84
           S++ NGV  SR + Q  +K+EEEEEEVEIDQRRLPA+Y+PATFD   ++S    R+ +LV
Sbjct: 112 SMNVNGVLLSRGYAQAARKDEEEEEEVEIDQRRLPADYDPATFDPTEHRSPPTERVFKLV 171

Query: 85  DEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEK 144
           DEV+GLTL E AEL  I+MKK+GMTE P VGVLK GAAG  GMAMK   AAAKEE KPEK
Sbjct: 172 DEVAGLTLVEVAELSSIIMKKRGMTELPTVGVLKGGAAGLAGMAMKAPAAAAKEEKKPEK 231

Query: 145 TAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKM 204
           T F+LKLESY+A +K+KIIKE+R+FTDLGLKEAKDLVEKTP++LK GV KEEAE+IIEKM
Sbjct: 232 TVFELKLESYEAASKIKIIKEVRSFTDLGLKEAKDLVEKTPSILKAGVSKEEAEQIIEKM 291

Query: 205 KAVGGKVIME 214
           KAVG KV+ME
Sbjct: 292 KAVGAKVVME 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737999|emb|CBI27200.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (479), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 99/160 (61%), Positives = 125/160 (78%), Gaps = 5/160 (3%)

Query: 56  IDQRRLPANYNPATFD---YQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPP 112
           IDQRRLPA+Y+PA FD   ++S    R+  LVDE++GLTL E AEL  I+ KK GM EPP
Sbjct: 44  IDQRRLPADYDPANFDPTQHRSPPTARVFRLVDEIAGLTLVEVAELSSILRKKLGMKEPP 103

Query: 113 VVGVLKPGA-AGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANAKVKIIKELRTFTD 171
           VV ++KPGA A  +G  MK   +AAKEE KPEKT F+LKLESY+A +K+KIIKE+R+FTD
Sbjct: 104 VVAIMKPGAVAAVSGGGMK-AASAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTD 162

Query: 172 LGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKV 211
           LGLKEAKDLVEK P+VLK GV KEE E+++EK+KA+  ++
Sbjct: 163 LGLKEAKDLVEKAPSVLKAGVSKEEGEQLVEKLKALDNQI 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2020678	208	AT1G70190 [Arabidopsis thalian	0.943	0.971	0.445	4e-35
TAIR|locus:2115385	179	AT4G36420 [Arabidopsis thalian	0.682	0.815	0.397	2.6e-22
TAIR|locus:2080369	186	AT3G06040 [Arabidopsis thalian	0.355	0.408	0.565	2e-17
POMBASE|SPCC4B3.09c	173	SPCC4B3.09c "mitochondrial rib	0.612	0.757	0.323	3.8e-14
GENEDB_PFALCIPARUM|PFB0545c	255	PFB0545c "ribosomal protein L7	0.359	0.301	0.389	4.8e-14
UNIPROTKB|O96202	255	PFB0545c "Mitochondrial riboso	0.359	0.301	0.389	4.8e-14
TAIR|locus:2120116	167	AT4G37660 [Arabidopsis thalian	0.336	0.431	0.5	4.9e-14
ASPGD|ASPL0000042202	184	AN2057 [Emericella nidulans (t	0.630	0.733	0.321	3.4e-13
TAIR|locus:2056921	110	AT2G03130 [Arabidopsis thalian	0.359	0.7	0.428	2.2e-11
CGD|CAL0006345	174	orf19.2275 [Candida albicans (	0.607	0.747	0.318	5.8e-11

TAIR|locus:2020678 AT1G70190 [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 98/220 (44%), Positives = 125/220 (56%)

Query:     1 MSLISKLRHHLPNRLSRNPSVYPILALRSLSFNGVASRSFGQTXXXXXXXXXXXXIDQRR 60
             MSL+ + R HL    SR       L+L S    G   RS+ Q              DQR+
Sbjct:     1 MSLVLRFRQHLSQTSSR-------LSLLS-RIGGY--RSYTQPAKIEDEEEEE--FDQRK 48

Query:    61 LPANYNPATFD---YQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVL 117
             LP +Y+PATFD   ++S    R+  LVDE+S LTL E +ELG I+MKK+GMTE P V V+
Sbjct:    49 LPTDYDPATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVM 108

Query:   118 KPXXXXXXXXXXXX---XXXXXXEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGL 174
             KP                     EE K EKT F++KLES++A+AK+KIIKELR+FTDLGL
Sbjct:   109 KPGAGGGVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGL 168

Query:   175 KEAKDLVEKTPAVLKKGVLXXXXXXXXXXXXXVGGKVIME 214
             KEAK LVEKTPA+LK G+              +G KV++E
Sbjct:   169 KEAKALVEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2115385 AT4G36420 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 58/146 (39%), Positives = 83/146 (56%)

Query:    69 TFDYQSIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPXXXXXXXXX 128
             ++   + Q   + ++V+E+S LTL E+ +L  I+ +K  ++E PV+  + P         
Sbjct:    34 SYSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGA 93

Query:   129 XXXXXXXXXEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVL 188
                      E+ K  KTAFD+ L++YDA +K+K+IKE+RT T LGLKEAKDLVEK P +L
Sbjct:    94 SKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLL 153

Query:   189 KKGVLXXXXXXXXXXXXXVGGKVIME 214
             KKGV              VG KV ME
Sbjct:   154 KKGVSKEEAEKIIEKLKAVGAKVAME 179

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TAIR|locus:2080369 AT3G06040 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 43/76 (56%), Positives = 54/76 (71%)

Query:   139 ELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLXXXXX 198
             E K EKTAFD+KLE ++A+ K+K+IKE+RTFT LGLKEAK+LVEK PA+LK+GV      
Sbjct:   111 EEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEAN 170

Query:   199 XXXXXXXXVGGKVIME 214
                     VGG  +ME
Sbjct:   171 EIIAKIKAVGGIAVME 186

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

POMBASE|SPCC4B3.09c SPCC4B3.09c "mitochondrial ribosomal protein subunit L12 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 44/136 (32%), Positives = 71/136 (52%)

Query:    79 RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPXXXXXXXXXXXXXXXXXXE 138
             ++ E+VD++S L+L E++EL   + +K  + E   +  + P                  E
Sbjct:    43 QIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAP-----E 97

Query:   139 ELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLXXXXX 198
             E K EKT ++LKLES+DA +K K+IKE+++   L L +AK  VE  P VLK+ +L     
Sbjct:    98 EKKEEKTTWNLKLESFDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAE 157

Query:   199 XXXXXXXXVGGKVIME 214
                     +  KV++E
Sbjct:   158 AIKSKLEKLSCKVVLE 173

GO:0003735 "structural constituent of ribosome" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISM

GO:0006412 "translation" evidence=ISM

GO:0032543 "mitochondrial translation" evidence=NAS

GENEDB_PFALCIPARUM|PFB0545c PFB0545c "ribosomal protein L7/L12, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 148 (57.2 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
 Identities = 30/77 (38%), Positives = 44/77 (57%)

Query:   138 EELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLXXXX 197
             EE K  K+ F++KLE +D   K+  IKE+R  T++GLKEAKD+VE  P  ++K V     
Sbjct:   179 EEKKNTKSTFNVKLEKFDVKNKINTIKEIRKITNVGLKEAKDMVESAPFYIQKSVPSEKA 238

Query:   198 XXXXXXXXXVGGKVIME 214
                      +G  +I+E
Sbjct:   239 EEMKKSFEQLGATIILE 255

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|O96202 PFB0545c "Mitochondrial ribosomal protein L12, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 148 (57.2 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
 Identities = 30/77 (38%), Positives = 44/77 (57%)

Query:   138 EELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLXXXX 197
             EE K  K+ F++KLE +D   K+  IKE+R  T++GLKEAKD+VE  P  ++K V     
Sbjct:   179 EEKKNTKSTFNVKLEKFDVKNKINTIKEIRKITNVGLKEAKDMVESAPFYIQKSVPSEKA 238

Query:   198 XXXXXXXXXVGGKVIME 214
                      +G  +I+E
Sbjct:   239 EEMKKSFEQLGATIILE 255

GO:0005739 "mitochondrion" evidence=ISS

GO:0020011 "apicoplast" evidence=RCA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

TAIR|locus:2120116 AT4G37660 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 36/72 (50%), Positives = 47/72 (65%)

Query:   143 EKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLXXXXXXXXX 202
             EKT FD+KLE ++A +K+K+IKE+R FTDLGLKEAK LVEK P ++K G+          
Sbjct:    96 EKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEEAEKIME 155

Query:   203 XXXXVGGKVIME 214
                 VG  V +E
Sbjct:   156 KLKAVGAIVALE 167

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

ASPGD|ASPL0000042202 AN2057 [Emericella nidulans (taxid:162425)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 44/137 (32%), Positives = 66/137 (48%)

Query:    79 RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVG-VLKPXXXXXXXXXXXXXXXXXX 137
             ++ ++VD++S L L E+A+L   +  +  + + PV G  + P                  
Sbjct:    49 KITQIVDQISQLNLLETADLVASLKSRLNIPDLPVGGFAMAPGAGAPGAAAAPAEEEEAA 108

Query:   138 EELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLXXXX 197
                + EKT F+LKLES DA  K K+IKE++T   L L ++K  VE  P VLK+ V     
Sbjct:   109 PPAQ-EKTLFNLKLESVDAAQKAKVIKEVKTLLGLSLVDSKKFVESVPKVLKESVPKEEA 167

Query:   198 XXXXXXXXXVGGKVIME 214
                      VG K +ME
Sbjct:   168 EKLIETLKAVGAKAVME 184

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

TAIR|locus:2056921 AT2G03130 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/77 (42%), Positives = 46/77 (59%)

Query:   138 EELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLXXXX 197
             E  K EKT F++KLES++A AK+KIIKE+R    +GLKEA  LV K P VLK G+     
Sbjct:    15 EGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTGLSKEEG 74

Query:   198 XXXXXXXXXVGGKVIME 214
                      +G + +++
Sbjct:    75 EEVVEKLNALGAEAVLQ 91

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

CGD|CAL0006345 orf19.2275 [Candida albicans (taxid:5476)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 44/138 (31%), Positives = 69/138 (50%)

Query:    79 RLHELVDEVSGLTLSESAELGLIMMKKQGMTEP--PVVGVLKPXXXXXXXXXXXXXXXXX 136
             ++  +VD++S LTL E+++L   + ++  +++   PV G                     
Sbjct:    43 KITTIVDQISTLTLLETSQLINELKERLNISDISLPVGGA-----QAAPVAQAAPAEEEV 97

Query:   137 XEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLXXX 196
              EE++ EKT F +KLES+DA +K KIIKE++    L L E+K  VE  P VLK+ V    
Sbjct:    98 KEEVE-EKTIFSIKLESFDAKSKPKIIKEVKGMLGLSLVESKKFVESAPKVLKENVAKED 156

Query:   197 XXXXXXXXXXVGGKVIME 214
                       +G KV +E
Sbjct:   157 AEKIKATLEGLGAKVSLE 174

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
cd00387	127	cd00387, Ribosomal_L7_L12, Ribosomal protein L7/L1	1e-37
PRK00157	123	PRK00157, rplL, 50S ribosomal protein L7/L12; Revi	1e-24
CHL00083	131	CHL00083, rpl12, ribosomal protein L12	6e-22
TIGR00855	123	TIGR00855, L12, ribosomal protein L7/L12	2e-21
COG0222	124	COG0222, RplL, Ribosomal protein L7/L12 [Translati	3e-21
pfam00542	68	pfam00542, Ribosomal_L12, Ribosomal protein L7/L12	1e-20

>gnl|CDD|100102 cd00387, Ribosomal_L7_L12, Ribosomal protein L7/L12

 Score =  126 bits (320), Expect = 1e-37
 Identities = 58/136 (42%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 78  LRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAK 137
           L++ E+V+ +  LTL E+AEL   + +K G++           A            AAA 
Sbjct: 1   LKVEEIVEALKELTLLEAAELVKALEEKFGVSASAAAAAAAAAAPA---------AAAAA 51

Query: 138 EELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEA 197
                EKT FD+ LES+ A  K+ +IKE+R  T LGLKEAKDLVE  P VLK+GV KEEA
Sbjct: 52  AAEAEEKTEFDVVLESFGAAKKIAVIKEVREITGLGLKEAKDLVESAPKVLKEGVSKEEA 111

Query: 198 EKIIEKMKAVGGKVIM 213
           E+I +K++  G KV +
Sbjct: 112 EEIKKKLEEAGAKVEL 127

Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of the ribosome. The stalk base consists of a portion of the 23S rRNA and ribosomal proteins L11 and L10. An extended C-terminal helix of L10 provides the binding site for L7/L12. L7/L12 consists of two domains joined by a flexible hinge, with the helical N-terminal domain (NTD) forming pairs of homodimers that bind to the extended helix of L10. It is the only multimeric ribosomal component, with either four or six copies per ribosome that occur as two or three dimers bound to the L10 helix. L7/L12 is the only ribosomal protein that does not interact directly with rRNA, but instead has indirect interactions through L10. The globular C-terminal domains of L7/L12 are highly mobile. They are exposed to the cytoplasm and contain binding sites for other molecules. Initiation factors, elongation factors, and release factors are known to interact with the L7/L12 stalk during their GTP-dependent cycles. The binding site for the factors EF-Tu and EF-G comprises L7/L12, L10, L11, the L11-binding region of 23S rRNA, and the sarcin-ricin loop of 23S rRNA. Removal of L7/L12 has minimal effect on factor binding and it has been proposed that L7/L12 induces the catalytically active conformation of EF-Tu and EF-G, thereby stimulating the GTPase activity of both factors. In eukaryotes, the proteins that perform the equivalent function to L7/L12 are called P1 and P2, which do not share sequence similarity with L7/L12. However, a bacterial L7/L12 homolog is found in some eukaryotes, in mitochondria and chloroplasts. In archaea, the protein equivalent to L7/L12 is called aL12 or L12p, but it is closer in sequence to P1 and P2 than to L7/L12. Length = 127

>gnl|CDD|234671 PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed

 Score = 93.3 bits (233), Expect = 1e-24
 Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 16/130 (12%)

Query: 82  ELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELK 141
           ++++ +  +T+ E +EL   + +K G++           AA     A     AAA EE  
Sbjct: 7   QIIEALKEMTVLELSELVKALEEKFGVS-----------AAAPVAAAAAAAAAAAAEE-- 53

Query: 142 PEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKII 201
             KT FD+ L+S     K+ +IK +R  T LGLKEAKDLVE  P V+K+GV KEEAE+I 
Sbjct: 54  --KTEFDVVLKSAGDK-KIAVIKAVREITGLGLKEAKDLVEGAPKVVKEGVSKEEAEEIK 110

Query: 202 EKMKAVGGKV 211
           +K++  G KV
Sbjct: 111 KKLEEAGAKV 120

Length = 123

>gnl|CDD|214358 CHL00083, rpl12, ribosomal protein L12

 Score = 86.6 bits (215), Expect = 6e-22
 Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 8/131 (6%)

Query: 82  ELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELK 141
           E+++E+  LTL E+AEL    +K+   T     GV      G   M+     AA   E  
Sbjct: 7   EIIEELKSLTLLEAAEL----VKQIEET----FGVDASAPVGGGMMSAPAAAAAQAAEEV 58

Query: 142 PEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKII 201
            EKT FD+ LE   A+ ++ ++K +R+ T LGLKEAK+LVE  P  +K+G+ KEEAE+  
Sbjct: 59  EEKTEFDVILEEVPADKRIAVLKVVRSLTGLGLKEAKELVESLPKTIKEGISKEEAEEAK 118

Query: 202 EKMKAVGGKVI 212
           ++++  G KVI
Sbjct: 119 KQLEEAGAKVI 129

Length = 131

>gnl|CDD|233152 TIGR00855, L12, ribosomal protein L7/L12

 Score = 85.6 bits (212), Expect = 2e-21
 Identities = 53/134 (39%), Positives = 76/134 (56%), Gaps = 14/134 (10%)

Query: 78  LRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAK 137
           L   ++++ +  +T+ E +EL   + +K G++    V     GAA           AAA 
Sbjct: 1   LSKEQIIEALKEMTVLELSELVKALEEKFGVSAAAPVAAGAAGAAA---------AAAAA 51

Query: 138 EELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEA 197
           EE    KT FD+ L+    N K+ +IK +R  T LGLKEAKDLVE  P VLK+GV KEEA
Sbjct: 52  EE----KTEFDVILKGAGDN-KIAVIKVVREITGLGLKEAKDLVEGAPKVLKEGVSKEEA 106

Query: 198 EKIIEKMKAVGGKV 211
           E++ +K++  G KV
Sbjct: 107 EELKKKLEEAGAKV 120

Ribosomal proteins L7 and L12 are synonymous except for post-translational modification of the N-terminal amino acid. THis model resembles pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 123

>gnl|CDD|223300 COG0222, RplL, Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]

 Score = 84.7 bits (210), Expect = 3e-21
 Identities = 54/130 (41%), Positives = 74/130 (56%), Gaps = 15/130 (11%)

Query: 82  ELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELK 141
           ++++ +  LT+ E +EL   + +K G+T    V     GAA           A A EE  
Sbjct: 7   QIIEALKELTVLELSELVKALEEKFGVTAAAPVAAAAAGAAA----------AEAAEE-- 54

Query: 142 PEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKII 201
             KT FD+ L+S     K+ +IK +R  T LGLKEAKDLVE  P VLK+GV KEEAE+I 
Sbjct: 55  --KTEFDVVLKSAGGK-KIAVIKVVRELTGLGLKEAKDLVEGAPKVLKEGVSKEEAEEIK 111

Query: 202 EKMKAVGGKV 211
           +K++  G KV
Sbjct: 112 KKLEEAGAKV 121

Length = 124

>gnl|CDD|201294 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal domain

 Score = 81.4 bits (202), Expect = 1e-20
 Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 147 FDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKA 206
           FD+ L S     K+ +IK +R  T LGLKEAKDLVE  P  +K+GV KEEAE+I +K++ 
Sbjct: 2   FDVVLTSAGDK-KIAVIKVVREITGLGLKEAKDLVEGAPKTIKEGVSKEEAEEIKKKLEE 60

Query: 207 VGGKVIME 214
            G KV ++
Sbjct: 61  AGAKVELK 68

Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
KOG1715	187	consensus Mitochondrial/chloroplast ribosomal prot	100.0
CHL00083	131	rpl12 ribosomal protein L12	100.0
cd00387	127	Ribosomal_L7_L12 Ribosomal protein L7/L12. Ribosom	100.0
TIGR00855	126	L12 ribosomal protein L7/L12. THis model resembles	100.0
PRK00157	123	rplL 50S ribosomal protein L7/L12; Reviewed	100.0
COG0222	124	RplL Ribosomal protein L7/L12 [Translation, riboso	100.0
PF00542	68	Ribosomal_L12: Ribosomal protein L7/L12 C-terminal	99.9
PRK06771	93	hypothetical protein; Provisional	97.74
PF02617	82	ClpS: ATP-dependent Clp protease adaptor protein C	85.49

>KOG1715 consensus Mitochondrial/chloroplast ribosomal protein L12 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-44  Score=308.06  Aligned_cols=152  Identities=44%  Similarity=0.608  Sum_probs=131.6

Q ss_pred             hccccCCCCCCCCCCCCC---chhhhhHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccC
Q 045414           56 IDQRRLPANYNPATFDYQ---SIQVLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTG  132 (214)
Q Consensus        56 ~~~~~~p~d~~p~~~~p~---~~~S~KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~  132 (214)
                      ..+.+.+..+.+.+|+|.   +++++||.+|+|+|++|||+|+++|+++|+++|||+..+.++++++|+    |+   .+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~~iv~eIssLtLlE~s~L~~~Lk~kl~i~e~~~~~a~~~g~----~~---~~  105 (187)
T KOG1715|consen   33 FSSSKSSTLSHRATPLPPIAAVPPPPKISKIVDEISSLTLLETSDLVDLLKKKLNIPELPLAPAAAAGA----AA---PD  105 (187)
T ss_pred             cCcccccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCCcccchhhccccC----CC---CC
Confidence            667778888888888888   889999999999999999999999999999999999876443222111    11   11


Q ss_pred             cchhhhcccCccceeeEEEeecCCchhHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEE
Q 045414          133 GAAAKEELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVI  212 (214)
Q Consensus       133 ~aa~~ee~~~EKT~FdV~L~~~~a~kKI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~Ve  212 (214)
                      ++++.+++++|||+|||+|++||+.+||+|||+||.+|||||+|||+|||++|+++|+|++|||||+||++|+++||+|+
T Consensus       106 ~~~a~ee~k~ekt~FdVkL~~fda~~KIkVIKEVR~~tgL~LkeAKklVE~aP~ilKegvtKeEAEkik~kLea~GakV~  185 (187)
T KOG1715|consen  106 AGGAEEEAKKEKTTFDVKLEKFDASSKIKVIKEVRALTGLGLKEAKKLVEKAPKILKEGVTKEEAEEIKEKLEAAGAKVV  185 (187)
T ss_pred             cccccccchhhcceEEEEEeecCccchhHHHHHHHHhccccHHHHHHHHHhccHHHHcCCCHHHHHHHHHHHHHcCCeEe
Confidence            23334566778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eC
Q 045414          213 ME  214 (214)
Q Consensus       213 lE  214 (214)
                      ||
T Consensus       186 le  187 (187)
T KOG1715|consen  186 LE  187 (187)
T ss_pred             eC
Confidence            97

>CHL00083 rpl12 ribosomal protein L12

Probab=100.00  E-value=2.3e-41  Score=274.81  Aligned_cols=130  Identities=38%  Similarity=0.540  Sum_probs=110.1

Q ss_pred             hhhHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccCcchhhhcccCccceeeEEEeecCC
Q 045414           77 VLRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDA  156 (214)
Q Consensus        77 S~KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~~aa~~ee~~~EKT~FdV~L~~~~a  156 (214)
                      |+++++|+|+|++|||+|++||++.|+++|||++++++++++  +++  +++    +++.++++++|||+|||+|++|++
T Consensus         2 s~k~~~ivd~i~~LTllE~~eLv~~le~~fgv~~~~~~a~~~--~~~--~a~----~~~~~~~~~~EKT~F~V~L~~~~~   73 (131)
T CHL00083          2 STKINEIIEELKSLTLLEAAELVKQIEETFGVDASAPVGGGM--MSA--PAA----AAAQAAEEVEEKTEFDVILEEVPA   73 (131)
T ss_pred             CchHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCccchhhhhh--ccc--cCc----ccccccchhhhcceeeEEEeecCC
Confidence            579999999999999999999999999999999875432211  100  000    111122346799999999999988


Q ss_pred             chhHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEeC
Q 045414          157 NAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME  214 (214)
Q Consensus       157 ~kKI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~VelE  214 (214)
                      ++||+|||+||++|||||+|||+|||++|++||+|++|+|||+||++|+++||+|+|.
T Consensus        74 ~~Ki~vIK~vr~it~lgLkeaK~lVe~~P~~ike~v~KeeAe~ik~~le~~Ga~v~lk  131 (131)
T CHL00083         74 DKRIAVLKVVRSLTGLGLKEAKELVESLPKTIKEGISKEEAEEAKKQLEEAGAKVIIK  131 (131)
T ss_pred             cchHHHHHHHHHHcCCCHHHHHHHHHhCCHHHHhCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999973

>cd00387 Ribosomal_L7_L12 Ribosomal protein L7/L12

Probab=100.00  E-value=2.6e-41  Score=272.79  Aligned_cols=126  Identities=45%  Similarity=0.613  Sum_probs=106.6

Q ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccCcchhhhcccCccceeeEEEeecCCch
Q 045414           79 RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANA  158 (214)
Q Consensus        79 KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~~aa~~ee~~~EKT~FdV~L~~~~a~k  158 (214)
                      ++++|+|+|++|||+|++||++.|+++|||++.++.+++    +++++    + +++++++.++|||+|||+|++||+++
T Consensus         2 ~~~~i~d~i~~LtllE~~eLv~~le~~~gv~~~~~~~~~----~~~a~----~-~~~~~~~~~~EKt~F~V~L~~~~~~~   72 (127)
T cd00387           2 KVEEIVEALKELTLLEAAELVKALEEKFGVSASAAAAAA----AAAAP----A-AAAAAAAEAEEKTEFDVVLESFGAAK   72 (127)
T ss_pred             cHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCcccccccc----cccCc----c-cccccccchhhcceEEEEEeeCCchh
Confidence            789999999999999999999999999999986322111    10001    0 11111223579999999999999889


Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEe
Q 045414          159 KVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIM  213 (214)
Q Consensus       159 KI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~Vel  213 (214)
                      ||+|||+||++|||||+|||+|||++|++||+|+||+|||+||++|+++||+|+|
T Consensus        73 Ki~vIK~VR~it~LgLkEAK~lVe~~P~~iKe~vsKeeAE~ik~kLe~aGA~Vel  127 (127)
T cd00387          73 KIAVIKEVREITGLGLKEAKDLVESAPKVLKEGVSKEEAEEIKKKLEEAGAKVEL  127 (127)
T ss_pred             hHHHHHHHHHHhCCChHHHHHHHHhCcHHHHhCCCHHHHHHHHHHHHHcCCEEeC
Confidence            9999999999999999999999999999999999999999999999999999986

Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of the ribosome. The stalk base consists of a portion of the 23S rRNA and ribosomal proteins L11 and L10. An extended C-terminal helix of L10 provides the binding site for L7/L12. L7/L12 consists of two domains joined by a flexible hinge, with the helical N-terminal domain (NTD) forming pairs of homodimers that bind to the extended helix of L10. It is the only multimeric ribosomal component, with either four or six copies per ribosome that occur as two or three dimers bound to the L10 helix. L7/L12 is the only ribosomal protein that does not interact directly with rRNA, but instead has indirect interactions through L10. The globular C-terminal domains of L7/L12 are highly mobile. They are exposed to the cytoplasm and

>TIGR00855 L12 ribosomal protein L7/L12

Probab=100.00  E-value=5.1e-39  Score=259.67  Aligned_cols=123  Identities=39%  Similarity=0.537  Sum_probs=105.4

Q ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccCcchhhhcccCccceeeEEEeecCCc
Q 045414           78 LRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDAN  157 (214)
Q Consensus        78 ~KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~~aa~~ee~~~EKT~FdV~L~~~~a~  157 (214)
                      -..++|+|+|++|||+|++||++.|+++|||+++++++++   ++  ++ +    +   +.+.++|||+|||+|+.++ +
T Consensus         4 ~~~~~ive~i~~LTllE~~eLv~~lee~fgV~a~a~~a~~---~a--~~-~----~---~~~~~eEKt~f~V~L~~~~-~   69 (126)
T TIGR00855         4 LSKEQIIEALKEMTVLELSELVKALEEKFGVSAAAPVAAG---AA--GA-A----A---AAAAAEEKTEFDVILKGAG-D   69 (126)
T ss_pred             ccHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCccchhhhc---cc--cc-c----c---ccccccccceeeEEEecCC-c
Confidence            3569999999999999999999999999999987643211   10  01 0    1   1123479999999999986 5


Q ss_pred             hhHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEeC
Q 045414          158 AKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME  214 (214)
Q Consensus       158 kKI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~VelE  214 (214)
                      +||+|||+||++|||||+|||+|||++|++||+|++|+|||+||++|+++||+|+|.
T Consensus        70 ~Ki~vIK~vR~itgLgLkEAK~lVe~~P~~ike~vsKeeAe~ik~~Le~aGa~veik  126 (126)
T TIGR00855        70 NKIAVIKVVREITGLGLKEAKDLVEGAPKVLKEGVSKEEAEELKKKLEEAGAKVEVK  126 (126)
T ss_pred             chhHHHHHHHHHcCCcHHHHHHHHHhCcHHHHhCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            799999999999999999999999999999999999999999999999999999973

THis model resembles Pfam model pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus.

>PRK00157 rplL 50S ribosomal protein L7/L12; Reviewed

Probab=100.00  E-value=1.5e-38  Score=256.06  Aligned_cols=121  Identities=40%  Similarity=0.567  Sum_probs=105.5

Q ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccCcchhhhcccCccceeeEEEeecCCc
Q 045414           78 LRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDAN  157 (214)
Q Consensus        78 ~KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~~aa~~ee~~~EKT~FdV~L~~~~a~  157 (214)
                      -.+++|+|+|++|||+|++||++.|+++|||+++++++++   +   ++      ++   .+..+|||+|||+|++| ++
T Consensus         3 ~~~~~i~e~i~~LtllE~~eLv~~lee~fgv~a~~~~~~~---~---~~------~~---~~~~eEkt~f~V~L~~~-~~   66 (123)
T PRK00157          3 LTKEQIIEALKEMTVLELSELVKALEEKFGVSAAAPVAAA---A---AA------AA---AAAAEEKTEFDVVLKSA-GD   66 (123)
T ss_pred             ccHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCccchhccc---c---cc------cc---ccccccccceeEEEecc-ch
Confidence            4689999999999999999999999999999987543211   0   01      00   12347999999999999 57


Q ss_pred             hhHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEeC
Q 045414          158 AKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME  214 (214)
Q Consensus       158 kKI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~VelE  214 (214)
                      +||+|||+||++|||||+|||+|||++|++||+|++|+|||+||++|+++||+|+|.
T Consensus        67 kKi~vIK~vR~itgLgLkEAK~lVe~~P~~ike~v~keeAe~ik~~Le~aGa~velk  123 (123)
T PRK00157         67 KKIAVIKAVREITGLGLKEAKDLVEGAPKVVKEGVSKEEAEEIKKKLEEAGAKVELK  123 (123)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHhCCHHHHhCCCHHHHHHHHHHHHHcCCEEeeC
Confidence            999999999999999999999999999999999999999999999999999999984

>COG0222 RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.7e-38  Score=254.32  Aligned_cols=121  Identities=42%  Similarity=0.580  Sum_probs=105.8

Q ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccCcchhhhcccCccceeeEEEeecCCch
Q 045414           79 RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANA  158 (214)
Q Consensus        79 KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~~aa~~ee~~~EKT~FdV~L~~~~a~k  158 (214)
                      .+++|++.|++||++|+++|++.++++|||++++++++++++     + +  + +     +..+|||+|||+|++++ ++
T Consensus         4 ~~e~iie~i~~~svlel~eLvk~~eekfgVsaaa~va~a~~~-----a-~--a-~-----~aaeEktefdVvL~~~g-~k   68 (124)
T COG0222           4 TKEQIIEALKELTVLELSELVKALEEKFGVTAAAPVAAAAAG-----A-A--A-A-----EAAEEKTEFDVVLKSAG-GK   68 (124)
T ss_pred             cHHHHHHHHHHhhHHHHHHHHHHHHHHhCCccchhhhhcccc-----c-c--c-c-----ccccccceeEEEecccC-Cc
Confidence            578999999999999999999999999999998764422111     0 0  0 1     12469999999999995 79


Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEeC
Q 045414          159 KVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME  214 (214)
Q Consensus       159 KI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~VelE  214 (214)
                      ||+|||.||++|||||||||++||++|++||+|++|+|||+||++|+++||+|++.
T Consensus        69 KI~VIK~vR~itGLGLKEAKdlVe~aP~~~KE~v~k~eAe~~kkkleeaGa~V~~k  124 (124)
T COG0222          69 KIAVIKVVRELTGLGLKEAKDLVEGAPKVLKEGVSKEEAEEIKKKLEEAGAKVELK  124 (124)
T ss_pred             chhHHHHHHHHhcccHHHHHHHHHhCcHHHHccCCHHHHHHHHHHHHHcCCeEeeC
Confidence            99999999999999999999999999999999999999999999999999999984

>PF00542 Ribosomal_L12: Ribosomal protein L7/L12 C-terminal domain; InterPro: IPR013823 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.90  E-value=1.5e-24  Score=158.51  Aligned_cols=68  Identities=53%  Similarity=0.815  Sum_probs=60.2

Q ss_pred             eeeEEEeecCCchhHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEeC
Q 045414          146 AFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME  214 (214)
Q Consensus       146 ~FdV~L~~~~a~kKI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~VelE  214 (214)
                      +|||+|++| +++||++||.||++|||||+|||++||++|.+|+++++++|||+|+++|+++||+|+|+
T Consensus         1 ef~V~L~~~-~~~ki~vIK~vR~~tgl~L~eAK~~vd~~p~~ik~~v~keeAe~ik~~Le~aGa~v~l~   68 (68)
T PF00542_consen    1 EFDVVLKSF-GEKKIKVIKEVREITGLGLKEAKKLVDSLPKVIKEGVSKEEAEEIKKKLEAAGAKVELK   68 (68)
T ss_dssp             SEEEEEEE--TTGHHHHHHHHHHHC---HHHHHHHHCTTTEEEEEEE-HHHHHHHHHHHHCCT-EEEEE
T ss_pred             CeEEEEeec-ccchHHHHHHHHHHhCCcHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            599999999 78999999999999999999999999999999999999999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the C-terminal domain of the large subunit ribosomal proteins, known as the L7/L12 family. L7/L12 is present in each 50S subunit in four copies organised as two dimers. The L8 protein complex consisting of two dimers of L7/L12 and L10 in Escherichia coli ribosomes is assembled on the conserved region of 23 S rRNA termed the GTPase-associated domain []. The L7/L12 dimer probably interacts with EF-Tu. L7 and L12 only differ in a single post translational modification of the addition of an acetyl group to the N terminus of L7.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1DD4_B 1DD3_A 1RQU_B 2GYA_5 2GYC_5 1RQS_A 1RQV_A 1CTF_A 2XUX_L.

>PRK06771 hypothetical protein; Provisional

Probab=97.74  E-value=2.4e-05  Score=61.22  Aligned_cols=29  Identities=31%  Similarity=0.393  Sum_probs=27.0

Q ss_pred             CchhHHHHHHHHHhhcCChHHHHHHHhhc
Q 045414          156 ANAKVKIIKELRTFTDLGLKEAKDLVEKT  184 (214)
Q Consensus       156 a~kKI~vIK~VR~iT~LgLkEAK~lVE~~  184 (214)
                      ..+||+.||.+|+.||+||+|||++||++
T Consensus        65 ~Gkki~AIK~~Re~tG~~L~eAK~yVD~L   93 (93)
T PRK06771         65 EGQTVTAVKRVREAFGFSLLEAKQYVDKL   93 (93)
T ss_pred             cCCchHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            35899999999999999999999999975

>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP

Probab=85.49  E-value=2.5  Score=31.22  Aligned_cols=64  Identities=22%  Similarity=0.285  Sum_probs=47.9

Q ss_pred             cceeeEEEeecCCchhHHHHHHHHHhhcCChHHHHHHHhhcc----hhhhcCCCHHHHHHHHHHHHHCC
Q 045414          144 KTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTP----AVLKKGVLKEEAEKIIEKMKAVG  208 (214)
Q Consensus       144 KT~FdV~L~~~~a~kKI~vIK~VR~iT~LgLkEAK~lVE~~P----~vIKe~vsKEEAE~iKkkLEaaG  208 (214)
                      ...|.|+|=.=+-..--.||..++.+.|+...+|..+...+-    .+|.. -++++||....+|...|
T Consensus         4 ~~~~~vvL~NDe~ht~~~Vi~~L~~~~~~s~~~A~~~a~~v~~~G~avv~~-~~~e~ae~~~~~l~~~g   71 (82)
T PF02617_consen    4 PDMYRVVLWNDEVHTFEQVIDVLRRVFGCSEEQARQIAMEVHREGRAVVGT-GSREEAEEYAEKLQRAG   71 (82)
T ss_dssp             --EEEEEEE--SSSBHHHHHHHHHHHC---HHHHHHHHHHHHHHSEEEEEE-EEHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHhHcCCEeeee-CCHHHHHHHHHHHHHHh
Confidence            357999997655566779999999999999999999987552    45544 58999999999999998

ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	214
2xtg_L	121	Trna Tranlocation On The 70s Ribosome: The Pre- Tra		1e-08
1rqu_A	120	Nmr Structure Of L7 Dimer From E.Coli Length = 120		1e-08
2gya_3	119	Structure Of The 50s Subunit Of A Pre-Translocation		1e-08
1rqs_A	74	Nmr Structure Of C-Terminal Domain Of Ribosomal Pro		2e-08
2bcw_B	68	Coordinates Of The N-Terminal Domain Of Ribosomal P		4e-07
1dd3_A	128	Crystal Structure Of Ribosomal Protein L12 From The		5e-07
2zjq_5	122	Interaction Of L7 With L11 Induced By Microccocin B		6e-06
2j01_M	125	Structure Of The Thermus Thermophilus 70s Ribosome		3e-05

>pdb|2XTG|L Chain L, Trna Tranlocation On The 70s Ribosome: The Pre- Translocational Translocation Intermediate Ti(Pre) Length = 121

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 143 EKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGV 192
           EKT FD+ L++  AN KV +IK +R  T LGLKEAKDLVE  PA LK+GV
Sbjct: 51  EKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGV 99

>pdb|1RQU|A Chain A, Nmr Structure Of L7 Dimer From E.Coli Length = 120

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 143 EKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGV 192
           EKT FD+ L++  AN KV +IK +R  T LGLKEAKDLVE  PA LK+GV
Sbjct: 50  EKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGV 98

>pdb|2GYA|3 Chain 3, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 119

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 143 EKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGV 192
           EKT FD+ L++  AN KV +IK +R  T LGLKEAKDLVE  PA LK+GV
Sbjct: 49  EKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGV 97

>pdb|1RQS|A Chain A, Nmr Structure Of C-Terminal Domain Of Ribosomal Protein L7 From E.Coli Length = 74

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 143 EKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGV 192
           EKT FD+ L++  AN KV +IK +R  T LGLKEAKDLVE  PA LK+GV
Sbjct: 4   EKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGV 52

>pdb|2BCW|B Chain B, Coordinates Of The N-Terminal Domain Of Ribosomal Protein L11,C-Terminal Domain Of Ribosomal Protein L7L12 AND A Portion Of The G' Domain Of Elongation Factor G, As Fitted Into Cryo-Em Map Of An Escherichia Coli 70sEf- GGdpFusidic Acid Complex Length = 68

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 147 FDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGV 192
           FD+ L++  AN KV +IK +R  T LGLKEAKDLVE  PA LK+GV
Sbjct: 2   FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGV 46

>pdb|1DD3|A Chain A, Crystal Structure Of Ribosomal Protein L12 From Thermotoga Maritima Length = 128

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 4/55 (7%)
Query: 141 KPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKT---PAVLKKGV 192
           + EKT FD+ L+S+  N K+++IK +R  T LGLKEAKDLVEK     AV+K GV
Sbjct: 53  QEEKTEFDVVLKSFGQN-KIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGV 106

>pdb|2ZJQ|5 Chain 5, Interaction Of L7 With L11 Induced By Microccocin Binding To The Deinococcus Radiodurans 50s Subunit Length = 122

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 36/52 (69%), Gaps = 4/52 (7%)
Query: 142 PEKTAFDLKLESYDANA-KVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGV 192
            EKT FD+ L   DA A K+ +IKE+R  T LGLKEAKD+ EK   VLK+GV
Sbjct: 52  EEKTEFDVVL--IDAGASKINVIKEIRGITGLGLKEAKDMSEK-GGVLKEGV 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
2ftc_E	137	L12MT, MRP-L12, 39S ribosomal protein L12, mitocho	8e-32
2j01_L	125	50S ribosomal protein L7; ribosome, tRNA, paromomy	1e-21
1dd3_A	128	50S ribosomal protein L7/L12; dimer formation, fle	3e-21
3sgf_J	121	50S ribosomal protein L7/L12; typeii release facto	4e-21
2zjq_5	122	50S ribosomal protein L7/L12; ribosome, ribosomal	1e-19
1ctf_A	74	Ribosomal protein L7/L12; 1.70A {Escherichia coli}	7e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 137

 Score =  111 bits (280), Expect = 8e-32
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 79  RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKE 138
           ++ +LV +++ LTL E ++L  ++ K   + +  ++ +                 A    
Sbjct: 2   KIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGA-APAPTAPEAAEEDV 60

Query: 139 ELKPEKTAFDLKLESYDANAKVKIIKELRTF-TDLGLKEAKDLVEKTPAVLKKGVLKEEA 197
             + E+T F ++L       KVK+IKE++ +   + L +AK LVE  P  +K  V K EA
Sbjct: 61  PKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEA 120

Query: 198 EKIIEKMKAVGGKVIME 214
           EKI   ++AVGG V++E
Sbjct: 121 EKIKAALEAVGGTVVLE 137

>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I Length = 128

 Score = 84.1 bits (208), Expect = 3e-21
 Identities = 56/137 (40%), Positives = 79/137 (57%), Gaps = 15/137 (10%)

Query: 78  LRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAK 137
           + + E+++ +  LT+SE AEL   +  K G+T    V V     AG          A A 
Sbjct: 1   MTIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAG--------AAAGAA 52

Query: 138 EELKPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVE---KTPAVLKKGVLK 194
           +E   EKT FD+ L+S+  N K+++IK +R  T LGLKEAKDLVE      AV+K GV K
Sbjct: 53  QE---EKTEFDVVLKSFGQN-KIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSK 108

Query: 195 EEAEKIIEKMKAVGGKV 211
           EEAE+I +K++  G +V
Sbjct: 109 EEAEEIKKKLEEAGAEV 125

>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A Length = 121

 Score = 83.6 bits (207), Expect = 4e-21
 Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 18/130 (13%)

Query: 82  ELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELK 141
           ++++ V+ +++ +  EL   M +K G++    V V                         
Sbjct: 7   QIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPVEA-----------------A 49

Query: 142 PEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKII 201
            EKT FD+ L++  AN KV +IK +R  T LGLKEAKDLVE  PA LK+GV K++AE + 
Sbjct: 50  EEKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALK 108

Query: 202 EKMKAVGGKV 211
           + ++  G +V
Sbjct: 109 KALEEAGAEV 118

>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1 Length = 122

 Score = 79.8 bits (197), Expect = 1e-19
 Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 17/130 (13%)

Query: 82  ELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELK 141
            L+D++  LT+ E A+L   + +  G+T           AA           + A EE  
Sbjct: 7   ALIDQLGQLTIMELADLIDGLKETWGVT-----------AAVAVSGGGAGAASPAAEE-- 53

Query: 142 PEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKII 201
             KT FD+ L    A+ K+ +IKE+R  T LGLKEAKD+ E    VLK+GV K+EAEK+ 
Sbjct: 54  --KTEFDVVLIDAGAS-KINVIKEIRGITGLGLKEAKDMSE-KGGVLKEGVAKDEAEKMK 109

Query: 202 EKMKAVGGKV 211
            +++A G +V
Sbjct: 110 AQLEAAGARV 119

>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B Length = 74

 Score = 74.0 bits (182), Expect = 7e-18
 Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 143 EKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIE 202
           EKT FD+ L++  AN KV +IK +R  T LGLKEAKDLVE  PA LK+GV K++AE + +
Sbjct: 4   EKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKK 62

Query: 203 KMKAVGGKV 211
            ++  G +V
Sbjct: 63  ALEEAGAEV 71

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 43/293 (14%), Positives = 77/293 (26%), Gaps = 108/293 (36%)

Query: 3   LISKLRHHLPNRLSRNPSVY---------PILALRSLSFNGVASRSFGQ----TVKKEEE 49
              KLR  L   L    +V            +AL       V  +   +     +K    
Sbjct: 136 PYLKLRQAL-LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 50  EEEEVEIDQ-------------------------------RRLPAN-------------Y 65
            E  +E+ Q                               RRL  +              
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 66  NPAT---FDYQSIQVL---RLHELVDEVS--------------GLTLSESAELGL--IMM 103
           N      F+    ++L   R  ++ D +S               LT  E   L L  +  
Sbjct: 255 NAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 104 KKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANAKVKII 163
           + Q +  P  V    P                  E ++     +D   +  + +    II
Sbjct: 314 RPQDL--PREVLTTNPRRLSIIA-----------ESIRDGLATWD-NWKHVNCDKLTTII 359

Query: 164 K---------ELRT-FTDLGL--KEAKDLVEKTPAVLKKGVLKEEAEKIIEKM 204
           +         E R  F  L +    A  +     +++   V+K +   ++ K+
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKL 411

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
2ftc_E	137	L12MT, MRP-L12, 39S ribosomal protein L12, mitocho	100.0
2j01_L	125	50S ribosomal protein L7; ribosome, tRNA, paromomy	100.0
2zjq_5	122	50S ribosomal protein L7/L12; ribosome, ribosomal	100.0
1dd3_A	128	50S ribosomal protein L7/L12; dimer formation, fle	100.0
3sgf_J	121	50S ribosomal protein L7/L12; typeii release facto	100.0
1ctf_A	74	Ribosomal protein L7/L12; 1.70A {Escherichia coli}	99.96
1dd4_C	40	50S ribosomal protein L7/L12; dimer formation, fle	99.06
1zav_U	30	50S ribosomal protein L7/L12; ribosome structure a	98.47
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	82.17

>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=1.8e-44  Score=293.62  Aligned_cols=135  Identities=31%  Similarity=0.455  Sum_probs=109.7

Q ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccCc-chhhhcccCccceeeEEEeecCC
Q 045414           78 LRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGG-AAAKEELKPEKTAFDLKLESYDA  156 (214)
Q Consensus        78 ~KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~~-aa~~ee~~~EKT~FdV~L~~~~a  156 (214)
                      +||++|+|+|++|||+|++||++.|+++|||+++++++++++++ + +++++++++ +.++.++++|||+|||+|++|++
T Consensus         1 ~kv~~ive~i~~LtllE~~eLv~~leekfgv~aaa~~~~~~~~~-~-~~~~a~a~~~~~~~a~~~eEKteFdV~L~~~~a   78 (137)
T 2ftc_E            1 PKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVP-G-AAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKP   78 (137)
T ss_pred             CcHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcccccccccccc-c-CCCCccccccccccccccccCCeeEEEeeccCc
Confidence            48999999999999999999999999999999875433211100 1 100000101 01112235799999999999998


Q ss_pred             chhHHHHHHHHHh-hcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEeC
Q 045414          157 NAKVKIIKELRTF-TDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME  214 (214)
Q Consensus       157 ~kKI~vIK~VR~i-T~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~VelE  214 (214)
                      ++||+|||+||++ |||||||||+|||++|++||+|+||+|||+||++|+++||+|+||
T Consensus        79 ~~KI~VIK~VR~i~TgLgLkEAK~lVe~aP~~iKe~vsKeeAE~iK~kLe~aGA~Vele  137 (137)
T 2ftc_E           79 VDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE  137 (137)
T ss_pred             cchhHHHHHHHHhccCCChHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            8999999999997 999999999999999999999999999999999999999999997

>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1

Probab=100.00  E-value=5.4e-40  Score=262.97  Aligned_cols=118  Identities=41%  Similarity=0.543  Sum_probs=103.1

Q ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccCcchhhhcccCccceeeEEEeecCCch
Q 045414           79 RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANA  158 (214)
Q Consensus        79 KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~~aa~~ee~~~EKT~FdV~L~~~~a~k  158 (214)
                      .+++|+|+|++|||+|++||++.|+++|||+++++++++  +  +  + +   ++     +..+|||+|||+|++|+ ++
T Consensus         4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaap~a~a--~--~--~-a---~a-----~a~eEKteFdV~L~~~~-~~   67 (122)
T 2zjq_5            4 DKQALIDQLGQLTIMELADLIDGLKETWGVTAAVAVSGG--G--A--G-A---AS-----PAAEEKTEFDVVLIDAG-AS   67 (122)
T ss_pred             cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCccccccc--C--C--C-c---cc-----ccccccceeEEEEecCC-cc
Confidence            468999999999999999999999999999986543211  1  0  0 0   01     12369999999999997 79


Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEe
Q 045414          159 KVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIM  213 (214)
Q Consensus       159 KI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~Vel  213 (214)
                      ||+|||+||++|||||||||+|||++ ++||+|+||+|||+||++|+++||+|+|
T Consensus        68 KI~VIK~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel  121 (122)
T 2zjq_5           68 KINVIKEIRGITGLGLKEAKDMSEKG-GVLKEGVAKDEAEKMKAQLEAAGARVEL  121 (122)
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence            99999999999999999999999999 9999999999999999999999999997

>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I

Probab=100.00  E-value=6.5e-41  Score=270.14  Aligned_cols=123  Identities=43%  Similarity=0.599  Sum_probs=104.0

Q ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccCcchhhhcccCccceeeEEEeecCCch
Q 045414           79 RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANA  158 (214)
Q Consensus        79 KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~~aa~~ee~~~EKT~FdV~L~~~~a~k  158 (214)
                      .+++|+|+|++|||+|++||++.|+++|||+++++++++   +++ ++ +  + +++   +..+|||+|||+|++|+ ++
T Consensus         2 ~~~~ive~i~~ltllE~~eLv~~lee~fgv~aaapva~~---~~~-~~-~--~-a~~---~a~eEKteFdV~L~~~~-~~   69 (128)
T 1dd3_A            2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVA---AAP-VA-G--A-AAG---AAQEEKTEFDVVLKSFG-QN   69 (128)
T ss_dssp             CHHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHHHHHH---HHH-HH-H--H-HHH---HHHHTTSSEEEEEEECT-TC
T ss_pred             CHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCcchhhcc---ccc-cc-c--c-ccc---ccccccceeeEEEecCC-cc
Confidence            368999999999999999999999999999976433221   000 00 0  0 010   12368999999999997 79


Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHhhcch---hhhcCCCHHHHHHHHHHHHHCCcEEEe
Q 045414          159 KVKIIKELRTFTDLGLKEAKDLVEKTPA---VLKKGVLKEEAEKIIEKMKAVGGKVIM  213 (214)
Q Consensus       159 KI~vIK~VR~iT~LgLkEAK~lVE~~P~---vIKe~vsKEEAE~iKkkLEaaGA~Vel  213 (214)
                      ||+|||+||++|||||||||+|||++|+   +||+|+||+|||+||++|+++||+|+|
T Consensus        70 KI~VIK~VR~itgLgLKEAK~lVe~aP~~~~~iKe~vsKeeAE~iK~kLe~aGA~Vel  127 (128)
T 1dd3_A           70 KIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL  127 (128)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHhCCccchHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            9999999999999999999999999999   999999999999999999999999997

>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A

Probab=100.00  E-value=1.9e-40  Score=265.31  Aligned_cols=117  Identities=37%  Similarity=0.541  Sum_probs=27.0

Q ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccCcchhhhcccCccceeeEEEeecCCch
Q 045414           79 RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANA  158 (214)
Q Consensus        79 KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~~aa~~ee~~~EKT~FdV~L~~~~a~k  158 (214)
                      .+++|+|+|++||++|++||++.|+++|||+++++++    +  + ++      ++    +..+|||+|||+|++|+ ++
T Consensus         4 ~~~~ive~i~~ltllE~~eLv~~lee~fgVsaaa~~a----~--~-a~------~a----~a~eEKteFdV~L~~~g-~~   65 (121)
T 3sgf_J            4 TKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVA----V--A-AG------PV----EAAEEKTEFDVILKAAG-AN   65 (121)
T ss_dssp             CHHHHHHGGGGCHHHHHHHHHTTTCSCC----------------------------------------------------
T ss_pred             cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCcccccc----c--c-cc------cc----ccccccceeEEEEecCc-hh
Confidence            5789999999999999999999999999999765321    1  0 00      00    12368999999999996 69


Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEe
Q 045414          159 KVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIM  213 (214)
Q Consensus       159 KI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~Vel  213 (214)
                      ||+|||+||++|||||||||+|||++|++||+|+||+|||+||++|+++||+|+|
T Consensus        66 Ki~VIK~VR~itgLgLkEAK~lVe~aP~~iKe~vsKeeAE~ik~kLe~aGA~Vel  120 (121)
T 3sgf_J           66 KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV  120 (121)
T ss_dssp             -------------------------------------------------------
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEee
Confidence            9999999999999999999999999999999999999999999999999999987

>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B

Probab=99.96  E-value=4.6e-30  Score=190.26  Aligned_cols=71  Identities=48%  Similarity=0.687  Sum_probs=65.9

Q ss_pred             CccceeeEEEeecCCchhHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEe
Q 045414          142 PEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIM  213 (214)
Q Consensus       142 ~EKT~FdV~L~~~~a~kKI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~Vel  213 (214)
                      +|||+|||+|++|+ ++||+|||+||++|||||||||+|||++|++||+|+||+|||+||++|+++||+|+|
T Consensus         3 eEkteFdV~L~~~~-~~Ki~vIK~VR~itgLgLkEAK~lVe~~P~~iKe~vsKeeAe~ik~~Le~aGA~Vel   73 (74)
T 1ctf_A            3 EEKTEFDVILKAAG-ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV   73 (74)
T ss_dssp             ----CEEEEEEECG-GGHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred             cccceeEEEEeeCC-cchhHHHHHHHHHcCCCHHHHHHHHHhCcHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            58999999999996 799999999999999999999999999999999999999999999999999999997

>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1

Probab=99.06  E-value=1.8e-10  Score=76.31  Aligned_cols=34  Identities=32%  Similarity=0.443  Sum_probs=31.4

Q ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCC
Q 045414           79 RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPP  112 (214)
Q Consensus        79 KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~  112 (214)
                      ++++|+|+|++||++|++||++.||++|||++++
T Consensus         2 ~~~~iie~i~~lTvlE~~eLvk~leekfGVsaaa   35 (40)
T 1dd4_C            2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAA   35 (40)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHTCCCSCC
T ss_pred             CHHHHHHHHHhCcHHHHHHHHHHHHHHHCCCccc
Confidence            4789999999999999999999999999998753

>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C

Probab=98.47  E-value=9.7e-08  Score=59.64  Aligned_cols=28  Identities=36%  Similarity=0.484  Sum_probs=27.0

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhhC
Q 045414           80 LHELVDEVSGLTLSESAELGLIMMKKQG  107 (214)
Q Consensus        80 V~~Ivd~I~~LTLlE~sELv~~leekfG  107 (214)
                      +++|+|+|++||++|++||++.|+++||
T Consensus         3 ~~~iie~i~~lTvlEl~eLvk~lEe~fG   30 (30)
T 1zav_U            3 IDEIIEAIEKLTVSELAELVKKLEDKFG   30 (30)
T ss_dssp             HHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHhC
Confidence            5799999999999999999999999998

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=82.17  E-value=0.96  Score=32.19  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=22.3

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHhhcc
Q 045414          160 VKIIKELRTFTDLGLKEAKDLVEKTP  185 (214)
Q Consensus       160 I~vIK~VR~iT~LgLkEAK~lVE~~P  185 (214)
                      ...||+||+.||.|.+|+|+.++.+-
T Consensus        10 ~~~Vk~LRe~TGag~~dcKkAL~e~~   35 (64)
T 2cp9_A           10 KELLMKLRRKTGYSFVNCKKALETCG   35 (64)
T ss_dssp             CHHHHHHHHHHCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            36799999999999999999776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d1dd3a2	71	d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-ter	3e-17
d1ctfa_	68	d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal	7e-17

>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 71

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 70.8 bits (174), Expect = 3e-17
 Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 4/70 (5%)

Query: 147 FDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTP---AVLKKGVLKEEAEKIIEK 203
           FD+ L+S+  N K+++IK +R  T LGLKEAKDLVEK     AV+K GV KEEAE+I +K
Sbjct: 2   FDVVLKSFGQN-KIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKK 60

Query: 204 MKAVGGKVIM 213
           ++  G +V +
Sbjct: 61  LEEAGAEVEL 70

>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 68

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 69.7 bits (171), Expect = 7e-17
 Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 1/67 (1%)

Query: 147 FDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKA 206
           FD+ L++  AN KV +IK +R  T LGLKEAKDLVE  PA LK+GV K++AE + + ++ 
Sbjct: 2   FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEE 60

Query: 207 VGGKVIM 213
            G +V +
Sbjct: 61  AGAEVEV 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d2zjq51	71	Ribosomal protein L7/12, C-terminal domain {Deinoc	99.95
d1ctfa_	68	Ribosomal protein L7/12, C-terminal domain {Escher	99.94
d1dd3a2	71	Ribosomal protein L7/12, C-terminal domain {Thermo	99.93
d1dd3a1	57	Ribosomal protein L7/12, oligomerisation (N-termin	98.99
d2gyc31	47	Ribosomal protein L7/12, oligomerisation (N-termin	98.36
d1zavu1	30	Ribosomal protein L7/12, oligomerisation (N-termin	97.91
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	92.47
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	89.61
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	88.26

>d2zjq51 d.45.1.1 (5:52-122) Ribosomal protein L7/12, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.95  E-value=9.7e-29  Score=180.20  Aligned_cols=70  Identities=50%  Similarity=0.725  Sum_probs=67.0

Q ss_pred             CccceeeEEEeecCCchhHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEe
Q 045414          142 PEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIM  213 (214)
Q Consensus       142 ~EKT~FdV~L~~~~a~kKI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~Vel  213 (214)
                      +|||+|||+|++|| ++||+|||+||++|||||+|||+|||+ |.+||+|+||+|||++|++|+++||+|+|
T Consensus         1 EEKt~F~V~L~~~~-~~Ki~vIK~VR~it~LgLkeAK~lVe~-p~~ike~vsKeeAE~~k~~Le~aGA~Vel   70 (71)
T d2zjq51           1 EEKTEFDVVLIDAG-ASKINVIKEIRGITGLGLKEAKDMSEK-GGVLKEGVAKDEAEKMKAQLEAAGARVEL   70 (71)
T ss_pred             CCCcEEEEEEeeCC-cchhhHHHHHHHhcCCCHHHHHhhccC-chHhhcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            48999999999998 479999999999999999999999998 77999999999999999999999999987

>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=6.6e-28  Score=174.48  Aligned_cols=67  Identities=48%  Similarity=0.697  Sum_probs=65.1

Q ss_pred             eeeEEEeecCCchhHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEe
Q 045414          146 AFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIM  213 (214)
Q Consensus       146 ~FdV~L~~~~a~kKI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~Vel  213 (214)
                      +|||+|++|++ +||+|||+||++|||||+|||+|||++|++||+|+||+|||++|++|+++||+|+|
T Consensus         1 EF~V~L~~~~~-~Ki~vIK~VR~it~lgLkEAK~lVe~~P~~ike~vskeeAE~ik~~Le~aGA~Vel   67 (68)
T d1ctfa_           1 EFDVILKAAGA-NKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV   67 (68)
T ss_dssp             CEEEEEEECGG-GHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred             CeEEEEccCCc-chhHHHHHHHHhcCCCHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            59999999985 79999999999999999999999999999999999999999999999999999987

>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=6.5e-27  Score=170.48  Aligned_cols=67  Identities=51%  Similarity=0.767  Sum_probs=64.0

Q ss_pred             eeeEEEeecCCchhHHHHHHHHHhhcCChHHHHHHHhhcch---hhhcCCCHHHHHHHHHHHHHCCcEEEe
Q 045414          146 AFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPA---VLKKGVLKEEAEKIIEKMKAVGGKVIM  213 (214)
Q Consensus       146 ~FdV~L~~~~a~kKI~vIK~VR~iT~LgLkEAK~lVE~~P~---vIKe~vsKEEAE~iKkkLEaaGA~Vel  213 (214)
                      +|||+|++|+ ++||+|||+||++|||||+|||+|||++|+   +||+|+||+|||++|++||++||+|+|
T Consensus         1 EF~V~L~~~~-~~KI~vIK~VR~it~lgLkEAK~lVe~~p~~~~vike~v~KeeAE~~K~~Le~aGA~V~l   70 (71)
T d1dd3a2           1 EFDVVLKSFG-QNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL   70 (71)
T ss_dssp             SEEEEEEECT-TCHHHHHHHHHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred             CeEEEEcccC-ccchhHHHHHHHhcCCCHHHHHHHHHhcCCchHHHhcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            5999999996 579999999999999999999999998875   899999999999999999999999987

>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=5.7e-12  Score=87.17  Aligned_cols=37  Identities=35%  Similarity=0.459  Sum_probs=33.8

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccc
Q 045414           80 LHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGV  116 (214)
Q Consensus        80 V~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~  116 (214)
                      +++|++.|.+||++|++||++.|+++||||+++++.+
T Consensus         3 ~e~iie~I~~~tv~El~ELvKalEekfGVsAaaPV~~   39 (57)
T d1dd3a1           3 IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAV   39 (57)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHhCcccchhHHh
Confidence            6899999999999999999999999999998876643

>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=8.6e-08  Score=63.65  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=31.3

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcc
Q 045414           81 HELVDEVSGLTLSESAELGLIMMKKQGMTEPPVV  114 (214)
Q Consensus        81 ~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~  114 (214)
                      ++|++.|++||++|+.||++.+|+||||++++++
T Consensus         4 e~Ileaia~MSVmdvveLi~amEEKFGVsaaa~v   37 (47)
T d2gyc31           4 DQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAV   37 (47)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHTCTTTTHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhCcchhccc
Confidence            6899999999999999999999999999987544

>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.91  E-value=4.4e-06  Score=50.28  Aligned_cols=29  Identities=34%  Similarity=0.465  Sum_probs=27.7

Q ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHHhhC
Q 045414           79 RLHELVDEVSGLTLSESAELGLIMMKKQG  107 (214)
Q Consensus        79 KV~~Ivd~I~~LTLlE~sELv~~leekfG  107 (214)
                      .+++|++.|..||+-|++|||+.|+++||
T Consensus         2 ~~eeiv~aiekltvaelaelvk~ledkfg   30 (30)
T d1zavu1           2 TIDEIIEAIEKLTVSELAELVKKLEDKFG   30 (30)
T ss_dssp             CHHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhhHHHHHHHHHHHHhhcC
Confidence            47899999999999999999999999998

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.47  E-value=0.051  Score=35.87  Aligned_cols=37  Identities=30%  Similarity=0.504  Sum_probs=29.6

Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHH
Q 045414          159 KVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKII  201 (214)
Q Consensus       159 KI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iK  201 (214)
                      ++..||.+|+.||.|+.++|+.++.+      |-..|.|.++-
T Consensus         2 ~~elvK~LR~~Tga~~~dcKkAL~e~------~gD~ekA~e~L   38 (52)
T d1aipc1           2 QMELIKKLREATGAGMMDVKRALEDA------GWDEEKAVQLL   38 (52)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHT------TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHc------CCCHHHHHHHH
Confidence            68899999999999999999987754      44556665554

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.61  E-value=0.14  Score=33.92  Aligned_cols=36  Identities=25%  Similarity=0.273  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHH
Q 045414          160 VKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKII  201 (214)
Q Consensus       160 I~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iK  201 (214)
                      ...||.+|+.||.|+++.|+.++.+      +-..|.|.++-
T Consensus         5 ~~~iK~LR~~Tgag~~dCKkAL~e~------~gD~ekA~e~L   40 (54)
T d1efub3           5 ASLVKELRERTGAGMMDCKKALTEA------NGDIELAIENM   40 (54)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHT------TTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHc------CCCHHHHHHHH
Confidence            4789999999999999999987754      34455555543

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=88.26  E-value=0.19  Score=33.43  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=23.0

Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHhhc
Q 045414          159 KVKIIKELRTFTDLGLKEAKDLVEKT  184 (214)
Q Consensus       159 KI~vIK~VR~iT~LgLkEAK~lVE~~  184 (214)
                      -..+||++|+.||.|+.++|+.++.+
T Consensus         4 s~~lvk~LRe~Tga~~~dcKkAL~e~   29 (56)
T d1xb2b1           4 SKELLMKLRRKTGYSFINCKKALETC   29 (56)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence            35799999999999999999988755